Diff of the two buildlogs:

--
--- b1/build.log	2024-11-29 07:55:08.444340244 +0000
+++ b2/build.log	2024-11-29 12:25:09.487241616 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Thu Nov 28 13:01:15 -12 2024
-I: pbuilder-time-stamp: 1732842075
+I: Current time: Fri Nov 29 22:02:47 +14 2024
+I: pbuilder-time-stamp: 1732867367
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -36,52 +36,84 @@
 dpkg-source: info: applying disable_inchi_test.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/7487/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/3587/tmp/hooks/D01_modify_environment starting
+debug: Running on virt32b.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Nov 29 08:03 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/3587/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/3587/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='armhf'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='armhf'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
+  BASH_VERSION='5.2.32(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=armhf
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=arm
+  HOST_ARCH=armhf
   IFS=' 	
   '
-  INVOCATION_ID='a880e65306524b13bb3bbd76914cd409'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='7487'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=8034a53591cf416399940fe63b59503b
+  LANG=C
+  LANGUAGE=it_CH:it
+  LC_ALL=C
+  MACHTYPE=arm-unknown-linux-gnueabihf
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnueabihf
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=3587
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2kliCcr3/pbuilderrc_ZTTc --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2kliCcr3/b1 --logfile b1/build.log rdkit_202409.2-2.dsc'
-  SUDO_GID='114'
-  SUDO_UID='109'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://10.0.0.15:3142/'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2kliCcr3/pbuilderrc_WRQb --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2kliCcr3/b2 --logfile b2/build.log rdkit_202409.2-2.dsc'
+  SUDO_GID=112
+  SUDO_UID=106
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://10.0.0.15:3142/
 I: uname -a
-  Linux ff64a 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux
 I: ls -l /bin
   lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/7487/tmp/hooks/D02_print_environment finished
+I: user script /srv/workspace/pbuilder/3587/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -569,7 +601,7 @@
 Get: 367 http://deb.debian.org/debian unstable/main armhf texlive-latex-recommended all 2024.20241115-1 [8757 kB]
 Get: 368 http://deb.debian.org/debian unstable/main armhf texlive-pictures all 2024.20241115-1 [17.0 MB]
 Get: 369 http://deb.debian.org/debian unstable/main armhf texlive-latex-extra all 2024.20241115-1 [24.6 MB]
-Fetched 395 MB in 26s (15.4 MB/s)
+Fetched 395 MB in 22s (18.4 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package m4.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19684 files and directories currently installed.)
@@ -1757,8 +1789,8 @@
 Setting up tzdata (2024b-3) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Fri Nov 29 01:12:11 UTC 2024.
-Universal Time is now:  Fri Nov 29 01:12:11 UTC 2024.
+Local time is now:      Fri Nov 29 08:10:05 UTC 2024.
+Universal Time is now:  Fri Nov 29 08:10:05 UTC 2024.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up libboost-atomic1.83.0:armhf (1.83.0-3.2+b1) ...
@@ -2147,7 +2179,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/rdkit-202409.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../rdkit_202409.2-2_source.changes
+I: user script /srv/workspace/pbuilder/3587/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/3587/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/rdkit-202409.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../rdkit_202409.2-2_source.changes
 dpkg-buildpackage: info: source package rdkit
 dpkg-buildpackage: info: source version 202409.2-2
 dpkg-buildpackage: info: source distribution unstable
@@ -2253,8 +2289,8 @@
 -- Found Cairo: /usr/include/cairo
 -- Found Freetype: /usr/lib/arm-linux-gnueabihf/libfreetype.so (found version "2.13.3")
 postgres: /usr/include/postgresql;/usr/include/postgresql/17/server
--- Configuring done (50.3s)
--- Generating done (20.0s)
+-- Configuring done (10.5s)
+-- Generating done (5.7s)
 CMake Warning:
   Manually-specified variables were not used by the project:
 
@@ -2288,86 +2324,101 @@
 -- Detecting CXX compile features - done
 -- Found PostgreSQL: /usr/lib/arm-linux-gnueabihf/libpq.so (found version "17.2")
 postgres: /usr/include/postgresql;/usr/include/postgresql/17/server
--- Configuring done (10.9s)
+-- Configuring done (2.7s)
 -- Generating done (0.1s)
 -- Build files have been written to: /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/build-17
 make[1]: Leaving directory '/build/reproducible-path/rdkit-202409.2'
    debian/rules override_dh_auto_build
 make[1]: Entering directory '/build/reproducible-path/rdkit-202409.2'
 dh_auto_build
-	cd obj-arm-linux-gnueabihf && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1
+	cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
 make[2]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 /usr/bin/cmake -S/build/reproducible-path/rdkit-202409.2 -B/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
 make  -f CMakeFiles/Makefile2 all
 make[3]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build.make Code/RDGeneral/CMakeFiles/rdkitCatch.dir/depend
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/External/GA /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/GA /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/GA/CMakeFiles/ga.dir/DependInfo.cmake "--color="
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/RDGeneral /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/CMakeFiles/rdkitCatch.dir/DependInfo.cmake "--color="
+[  0%] Built target inchi_support
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  0%] Building CXX object Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDStreams && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RDSTREAMS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDStreams_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o -MF CMakeFiles/RDStreams.dir/streams.cpp.o.d -o CMakeFiles/RDStreams.dir/streams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDStreams/streams.cpp
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/GA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o -MF CMakeFiles/ga.dir/ga/StringChromosome.cpp.o.d -o CMakeFiles/ga.dir/ga/StringChromosome.cpp.o -c /build/reproducible-path/rdkit-202409.2/External/GA/ga/StringChromosome.cpp
+[  0%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o
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+[  0%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o
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+[  0%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o
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+[  0%] Linking CXX static library librdkitCatch.a
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/GA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/util/Util.cpp.o -MF CMakeFiles/ga.dir/util/Util.cpp.o.d -o CMakeFiles/ga.dir/util/Util.cpp.o -c /build/reproducible-path/rdkit-202409.2/External/GA/util/Util.cpp
+[  0%] Linking CXX shared library ../../lib/libRDKitRDStreams.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDStreams && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDStreams.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/RDStreams.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitRDStreams.so.1 -o ../../lib/libRDKitRDStreams.so.1.2024.09.2 CMakeFiles/RDStreams.dir/streams.cpp.o  /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDStreams && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDStreams.so.1.2024.09.2 ../../lib/libRDKitRDStreams.so.1 ../../lib/libRDKitRDStreams.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  0%] Built target RDStreams
 [  0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -MF CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDGeneralExceptions.cpp
 [  0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o -MF CMakeFiles/RDGeneral.dir/RDLog.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.cpp
 [  1%] Linking CXX shared library ../../lib/libRDKitga.so
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-[  1%] Linking CXX shared library ../../lib/libRDKitRDStreams.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDStreams && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDStreams.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ga.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitga.so.1 -o ../../lib/libRDKitga.so.1.2024.09.2 CMakeFiles/ga.dir/ga/StringChromosome.cpp.o CMakeFiles/ga.dir/ga/Chromosome.cpp.o CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/util/RandomUtil.cpp.o CMakeFiles/ga.dir/util/Util.cpp.o  /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/GA && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitga.so.1.2024.09.2 ../../lib/libRDKitga.so.1 ../../lib/libRDKitga.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/RDStreams.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitRDStreams.so.1 -o ../../lib/libRDKitRDStreams.so.1.2024.09.2 CMakeFiles/RDStreams.dir/streams.cpp.o  /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDStreams && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDStreams.so.1.2024.09.2 ../../lib/libRDKitRDStreams.so.1 ../../lib/libRDKitRDStreams.so
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ga.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitga.so.1 -o ../../lib/libRDKitga.so.1.2024.09.2 CMakeFiles/ga.dir/ga/StringChromosome.cpp.o CMakeFiles/ga.dir/ga/Chromosome.cpp.o CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/util/RandomUtil.cpp.o CMakeFiles/ga.dir/util/Util.cpp.o  /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/GA && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitga.so.1.2024.09.2 ../../lib/libRDKitga.so.1 ../../lib/libRDKitga.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  2%] Built target RDStreams
+[  2%] Built target ga
 [  2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o -MF CMakeFiles/RDGeneral.dir/versions.cpp.o.d -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/versions.cpp
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@@ -2425,44 +2461,36 @@
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-make  -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
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+make  -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
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+make  -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o -MF CMakeFiles/testDict.dir/testDict.cpp.o.d -o CMakeFiles/testDict.dir/testDict.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/testDict.cpp
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/EigenSolvers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -MF CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o.d -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
+make  -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
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+[  3%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/EigenSolvers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -MF CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o.d -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDBoost && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o -MF CMakeFiles/RDBoost.dir/Wrap.cpp.o.d -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDBoost/Wrap.cpp
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@@ -2471,14 +2499,14 @@
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -MF CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o.d -o CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/testConcurrentQueue.cpp
+[  3%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o -MF CMakeFiles/testRDValue.dir/testRDValue.cpp.o.d -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/testRDValue.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -2488,21 +2516,6 @@
 /usr/include/c++/14/bits/vector.tcc:181:5: note: parameter passing for argument of type 'std::vector<RDKit::Dict::Pair>::iterator' changed in GCC 7.1
   181 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-[  3%] Linking CXX executable testConcurrentQueue
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testConcurrentQueue.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testConcurrentQueue.dir/link.d CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -o testConcurrentQueue  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  3%] Built target testConcurrentQueue
-make  -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/RDGeneral /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  3%] Building CXX object Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -MF CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o.d -o CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/catch_dict.cpp
-[  3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -MF CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/ExplicitBitVect.cpp
 In file included from /build/reproducible-path/rdkit-202409.2/Code/RDBoost/Wrap.cpp:17:
 /build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h: In member function 'T PySequenceHolder<T>::operator[](unsigned int) const [with T = double]':
 /build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:9: warning: '*(const double*)((char*)&<unnamed> + offsetof(boost::python::extract<double>,boost::python::extract<double>::<unnamed>.boost::python::converter::extract_rvalue<double>::m_data.boost::python::converter::rvalue_from_python_data<double>::<unnamed>.boost::python::converter::rvalue_from_python_storage<double>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
@@ -2511,6 +2524,22 @@
 /build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:23: note: '<anonymous>' declared here
    68 |       T res = python::extract<T>(d_seq[which]);
       |                       ^~~~~~~~~~~~~~~~~~~~~~~~
+[  3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -MF CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/ExplicitBitVect.cpp
+[  3%] Linking CXX shared library ../../lib/libRDKitRDBoost.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/RDBoost.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2024.09.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  3%] Built target RDBoost
+make  -f Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/build.make Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/RDGeneral /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/build.make Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  3%] Building CXX object Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -MF CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o.d -o CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/testConcurrentQueue.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = RDKit::Dict::Pair; _Alloc = std::allocator<RDKit::Dict::Pair>]',
     inlined from 'void RDKit::Dict::clearVal(const std::string&)' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:320:20,
@@ -2561,12 +2590,26 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-[  3%] Linking CXX shared library ../../lib/libRDKitRDBoost.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/RDBoost.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2024.09.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so
+[  3%] Linking CXX executable testConcurrentQueue
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testConcurrentQueue.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testConcurrentQueue.dir/link.d CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -o testConcurrentQueue  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  3%] Built target RDBoost
+[  3%] Built target testConcurrentQueue
+make  -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/RDGeneral /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  3%] Building CXX object Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -MF CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o.d -o CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/catch_dict.cpp
+[  3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o -MF CMakeFiles/DataStructs.dir/Utils.cpp.o.d -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Utils.cpp
+[  3%] Linking CXX executable testDict
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testDict.dir/link.d CMakeFiles/testDict.dir/testDict.cpp.o -o testDict  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  3%] Built target testDict
 make  -f Code/RDGeneral/CMakeFiles/logTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/logTestsCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/RDGeneral /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/CMakeFiles/logTestsCatch.dir/DependInfo.cmake "--color="
@@ -2575,8 +2618,10 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [  4%] Building CXX object Code/RDGeneral/CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o -MF CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o.d -o CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/catch_logs.cpp
-[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o -MF CMakeFiles/DataStructs.dir/Utils.cpp.o.d -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Utils.cpp
+[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o -MF CMakeFiles/DataStructs.dir/base64.cpp.o.d -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/base64.cpp
+[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o -MF CMakeFiles/DataStructs.dir/BitOps.cpp.o.d -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/BitOps.cpp
 [  4%] Linking CXX executable testRDValue
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testRDValue.dir/link.d CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -2590,11 +2635,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-[  4%] Linking CXX executable testDict
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testDict.dir/link.d CMakeFiles/testDict.dir/testDict.cpp.o -o testDict  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[  4%] Linking CXX executable dictTestsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/dictTestsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/dictTestsCatch.dir/link.d CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -o dictTestsCatch  librdkitCatch.a ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  4%] Built target testDict
+[  4%] Built target dictTestsCatch
 make  -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/Numerics /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake "--color="
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Catalogs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o -MF CMakeFiles/Catalogs.dir/Catalog.cpp.o.d -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Catalogs/Catalog.cpp
-[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o -MF CMakeFiles/DataStructs.dir/base64.cpp.o.d -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/base64.cpp
-[  5%] Linking CXX executable dictTestsCatch
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+[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/DiscreteDistMat.cpp
+[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/DiscreteValueVect.cpp
+[  5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Catalogs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogParams.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Catalogs/CatalogParams.cpp
+[  5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Catalogs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Catalogs/CatalogEntry.cpp
+[  5%] Linking CXX executable testMatrices
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
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 [  5%] Linking CXX shared library ../../lib/libRDKitCatalogs.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/Catalogs.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2024.09.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -2651,11 +2696,13 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [  5%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -MF CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o.d -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp
-[  5%] Linking CXX executable testMatrices
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMatrices.dir/link.d CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/FPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/FPBReader.cpp
+[  5%] Linking CXX executable testMatCalc
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMatCalc.dir/link.d CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc  ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  5%] Built target testMatrices
+[  5%] Built target testMatCalc
 make  -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake "--color="
@@ -2664,16 +2711,16 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [  5%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/DistPicker.cpp
-[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/DiscreteDistMat.cpp
-[  5%] Linking CXX executable testMatCalc
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMatCalc.dir/link.d CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc  ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[  5%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/MaxMinPicker.cpp
+[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/MultiFPBReader.cpp
+[  5%] Linking CXX executable testQuery
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testQuery.dir/link.d CMakeFiles/testQuery.dir/test.cpp.o -o testQuery  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  5%] Built target testMatCalc
+[  5%] Built target testQuery
 make  -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
-[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/DiscreteValueVect.cpp
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ML/Cluster/Murtagh /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/Cluster/Murtagh /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake "--color="
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@@ -2681,38 +2728,8 @@
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o -MF CMakeFiles/Clustering.dir/Clustering.cpp.o.d -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ML/Cluster/Murtagh/Clustering.cpp
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 [  5%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/HierarchicalClusterPicker.cpp
-[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/FPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/FPBReader.cpp
-[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/MultiFPBReader.cpp
-[  5%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so
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-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/SimDivPickers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2024.09.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o  ../../lib/libRDKithc.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2024.09.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so
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-[  5%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
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-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/Clustering.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o  ../../../../lib/libRDKithc.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  5%] Built target Clustering
 In file included from /usr/include/c++/14/algorithm:61,
                  from /usr/include/boost/iterator/iterator_concepts.hpp:26,
                  from /usr/include/boost/range/concepts.hpp:20,
@@ -2750,11 +2767,8 @@
 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<double, unsigned int, unsigned int>*, std::vector<std::tuple<double, unsigned int, unsigned int> > >' changed in GCC 7.1
  1890 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[  5%] Linking CXX executable testSimDivPickers
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testSimDivPickers.dir/link.d CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers  ../../lib/libRDKitSimDivPickers.so.1.2024.09.2 ../../lib/libRDKithc.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  5%] Built target testSimDivPickers
+[  5%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1
 In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<double, unsigned int, unsigned int>*, vector<tuple<double, unsigned int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::{anonymous}::<lambda(const RDKit::MultiFPBReader::ResultTuple&, const RDKit::MultiFPBReader::ResultTuple&)> >]',
     inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<tuple<double, unsigned int, unsigned int>*, vector<tuple<double, unsigned int, unsigned int> > >; _Compare = RDKit::{anonymous}::<lambda(const RDKit::MultiFPBReader::ResultTuple&, const RDKit::MultiFPBReader::ResultTuple&)>]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
     inlined from 'void RDKit::{anonymous}::generic_nbr_helper(std::vector<std::tuple<double, unsigned int, unsigned int> >&, T, const sim_args&, unsigned int) [with T = void (*)(unsigned int, unsigned int, const sim_args*)]' at /build/reproducible-path/rdkit-202409.2/Code/DataStructs/MultiFPBReader.cpp:125:12:
@@ -2775,6 +2789,18 @@
 /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<double, unsigned int, unsigned int>*, std::vector<std::tuple<double, unsigned int, unsigned int> > >' changed in GCC 7.1
  1822 |         std::__insertion_sort(__first, __last, __comp);
       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/SimDivPickers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2024.09.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o  ../../lib/libRDKithc.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2024.09.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  5%] Built target SimDivPickers
+make  -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  5%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -MF CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o.d -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/testPickers.cpp
 [  6%] Linking CXX shared library ../../lib/libRDKitDataStructs.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/DataStructs.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2024.09.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o  ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -2782,37 +2808,20 @@
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [  6%] Built target DataStructs
 make  -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
-make  -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
-make  -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
-make  -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/Geometry /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake "--color="
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake "--color="
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake "--color="
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-make  -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [  6%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o
-[  6%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o -MF CMakeFiles/RDGeometryLib.dir/point.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/point.cpp
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -MF CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o.d -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/testDatastructs.cpp
-[  7%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o -MF CMakeFiles/testFPB.dir/testFPB.cpp.o.d -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/testFPB.cpp
-[  7%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -MF CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o.d -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/testMultiFPB.cpp
+[  6%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/Clustering.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o  ../../../../lib/libRDKithc.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  6%] Built target Clustering
+[  6%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/Transform2D.cpp
 In file included from /usr/include/c++/14/bits/specfun.h:43,
                  from /usr/include/c++/14/cmath:3898,
                  from /usr/include/c++/14/math.h:36,
@@ -2851,18 +2860,309 @@
 /usr/include/c++/14/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
 /usr/include/c++/14/bits/vector.tcc:195:5: note: parameter passing for argument of type 'std::vector<long long unsigned int, std::allocator<long long unsigned int> >::iterator' changed in GCC 7.1
 /usr/include/c++/14/bits/vector.tcc:195:5: note: parameter passing for argument of type 'std::vector<long long unsigned int, std::allocator<long long unsigned int> >::iterator' changed in GCC 7.1
+[  6%] Linking CXX executable testSimDivPickers
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testSimDivPickers.dir/link.d CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers  ../../lib/libRDKitSimDivPickers.so.1.2024.09.2 ../../lib/libRDKithc.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  6%] Built target testSimDivPickers
+make  -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  6%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -MF CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o.d -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/testDatastructs.cpp
 /usr/include/c++/14/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type 'std::vector<long long unsigned int, std::allocator<long long unsigned int> >::iterator' changed in GCC 7.1
   954 |       vector<_Tp, _Alloc>::
       |       ^~~~~~~~~~~~~~~~~~~
 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-[  7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/Transform2D.cpp
+[  6%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/Transform3D.cpp
 /usr/include/c++/14/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+[  6%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/UniformGrid3D.cpp
+[  6%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -MF CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/GridUtils.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/RDBoost/Wrap/RDBase.cpp:14:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+make  -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  7%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o -MF CMakeFiles/testFPB.dir/testFPB.cpp.o.d -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/testFPB.cpp
+[  7%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/RDGeometryLib.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o  ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  7%] Built target RDGeometryLib
+make  -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  7%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -MF CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o.d -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/testMultiFPB.cpp
+In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const long long unsigned int>]',
+    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Tp = long long unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
+    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
+    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; bool NoProxy = true; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:279:49:
+/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 2142 |       return __find_if(__first, __last, __pred,
+      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+ 2143 |                        std::__iterator_category(__first));
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const long long unsigned int>]',
+    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Tp = long long unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
+    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
+    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; bool NoProxy = true; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:286:53:
+/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 2142 |       return __find_if(__first, __last, __pred,
+      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+ 2143 |                        std::__iterator_category(__first));
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const long long unsigned int>]',
+    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Tp = long long unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
+    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
+    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; bool NoProxy = false; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:279:49:
+/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 2142 |       return __find_if(__first, __last, __pred,
+      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+ 2143 |                        std::__iterator_category(__first));
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const long long unsigned int>]',
+    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Tp = long long unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
+    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
+    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; bool NoProxy = false; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:286:53:
+/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 2142 |       return __find_if(__first, __last, __pred,
+      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+ 2143 |                        std::__iterator_category(__first));
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/14/vector:66:
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:134:28,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:128:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_delete_slice(Container&, PySliceObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:697:42,
+    inlined from 'static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_delete_item(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; bool NoProxy = true; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:256:49:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:134:28,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:128:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_delete_slice(Container&, PySliceObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:697:42,
+    inlined from 'static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_delete_item(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; bool NoProxy = false; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:256:49:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const double>]',
+    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
+    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
+    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; bool NoProxy = true; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:279:49:
+/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 2142 |       return __find_if(__first, __last, __pred,
+      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+ 2143 |                        std::__iterator_category(__first));
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const double>]',
+    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
+    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
+    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; bool NoProxy = true; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:286:53:
+/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 2142 |       return __find_if(__first, __last, __pred,
+      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+ 2143 |                        std::__iterator_category(__first));
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const double>]',
+    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
+    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
+    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; bool NoProxy = false; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:279:49:
+/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 2142 |       return __find_if(__first, __last, __pred,
+      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+ 2143 |                        std::__iterator_category(__first));
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const double>]',
+    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
+    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
+    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; bool NoProxy = false; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:286:53:
+/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 2142 |       return __find_if(__first, __last, __pred,
+      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+ 2143 |                        std::__iterator_category(__first));
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::extend(Container&, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:200:29,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::base_extend(Container&, boost::python::api::object) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:236:36:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::extend(Container&, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:200:29,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::base_extend(Container&, boost::python::api::object) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:236:36:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:134:28,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:128:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_delete_slice(Container&, PySliceObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:697:42,
+    inlined from 'static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_delete_item(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; bool NoProxy = true; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:256:49:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:134:28,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:128:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_delete_slice(Container&, PySliceObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:697:42,
+    inlined from 'static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_delete_item(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; bool NoProxy = false; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:256:49:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
+/usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type 'std::vector<long long unsigned int, std::allocator<long long unsigned int> >::iterator' changed in GCC 7.1
+  452 |       vector<_Tp, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
+/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
+      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
+/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
+      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:113:33,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:116:32,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:117:33,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
+/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
+      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
+/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
+      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:113:33,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:116:32,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:117:33,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
 [  7%] Linking CXX executable testFPB
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testFPB.dir/link.d CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB  ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -2876,8 +3176,24 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [  7%] Building CXX object Code/DataStructs/CMakeFiles/catchDataStructs.dir/catch_tests.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/DataStructs/CMakeFiles/catchDataStructs.dir/catch_tests.cpp.o -MF CMakeFiles/catchDataStructs.dir/catch_tests.cpp.o.d -o CMakeFiles/catchDataStructs.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/catch_tests.cpp
-[  7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/Transform3D.cpp
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::extend(Container&, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:200:29,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::base_extend(Container&, boost::python::api::object) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:236:36:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::extend(Container&, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:200:29,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::base_extend(Container&, boost::python::api::object) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:236:36:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 [  7%] Linking CXX executable testMultiFPB
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMultiFPB.dir/link.d CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -o testMultiFPB  ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -2891,161 +3207,232 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [  7%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -MF CMakeFiles/cDataStructs.dir/DataStructs.cpp.o.d -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/DataStructs.cpp
-[  8%] Linking CXX executable catchDataStructs
+[  8%] Linking CXX executable testDataStructs
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testDataStructs.dir/link.d CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs  ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  8%] Built target testDataStructs
+make  -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/Geometry /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[  8%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o -MF CMakeFiles/testTransforms.dir/testTransforms.cpp.o.d -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/testTransforms.cpp
+/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
+/usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
+  452 |       vector<_Tp, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
+/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
+      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
+/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
+      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:113:33,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:116:32,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:117:33,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
+/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
+      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
+/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
+      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:113:33,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:116:32,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
+      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:117:33,
+    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1488 |           _M_range_insert(begin() + __offset, __first, __last,
+      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1489 |                           std::__iterator_category(__first));
+      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+[  9%] Linking CXX executable catchDataStructs
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/catchDataStructs.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -MF CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o.d -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
-[  8%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o
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-[  8%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -MF CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/GridUtils.cpp
-[  8%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/DiscreteValueVect.cpp
-In file included from /build/reproducible-path/rdkit-202409.2/Code/RDBoost/Wrap/RDBase.cpp:14:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-In file included from /build/reproducible-path/rdkit-202409.2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:15:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h: In member function 'T PySequenceHolder<T>::operator[](unsigned int) const [with T = double]':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:9: warning: '*(const double*)((char*)&<unnamed> + offsetof(boost::python::extract<double>,boost::python::extract<double>::<unnamed>.boost::python::converter::extract_rvalue<double>::m_data.boost::python::converter::rvalue_from_python_data<double>::<unnamed>.boost::python::converter::rvalue_from_python_storage<double>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-   68 |       T res = python::extract<T>(d_seq[which]);
-      |         ^~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:23: note: '<anonymous>' declared here
-   68 |       T res = python::extract<T>(d_seq[which]);
-      |                       ^~~~~~~~~~~~~~~~~~~~~~~~
-[  8%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
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+[  9%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o -MF CMakeFiles/testGrid.dir/testGrid.cpp.o.d -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/testGrid.cpp
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so
+[  9%] Building CXX object Code/Geometry/CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/Geometry/CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/catch_tests.cpp
+[  9%] Linking CXX executable testGrid
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testGrid.dir/link.d CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid  ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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-[  8%] Built target RDGeometryLib
-make  -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
+[  9%] Built target testGrid
+make  -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/Geometry/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
+make  -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  8%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
-[  9%] Linking CXX executable testDataStructs
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testDataStructs.dir/link.d CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs  ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[  9%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o -MF CMakeFiles/rdGeometry.dir/Point.cpp.o.d -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/Wrap/Point.cpp
+[  9%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/DiscreteValueVect.cpp
+[  9%] Linking CXX executable geometryTestsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/geometryTestsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/geometryTestsCatch.dir/link.d CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o -o geometryTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  9%] Built target testDataStructs
-make  -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
+[  9%] Built target geometryTestsCatch
+make  -f Code/Numerics/CMakeFiles/testConrec.dir/build.make Code/Numerics/CMakeFiles/testConrec.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/Numerics /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/CMakeFiles/testConrec.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
+make  -f Code/Numerics/CMakeFiles/testConrec.dir/build.make Code/Numerics/CMakeFiles/testConrec.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  9%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -MF CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o.d -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory/InfoBitRanker.cpp
-In file included from /usr/include/c++/14/bits/stl_algo.h:61,
-                 from /usr/include/c++/14/algorithm:61,
-                 from /usr/include/boost/iterator/iterator_concepts.hpp:26,
-                 from /usr/include/boost/range/concepts.hpp:20,
-                 from /usr/include/boost/range/size_type.hpp:20,
-                 from /usr/include/boost/range/size.hpp:21,
-                 from /usr/include/boost/range/functions.hpp:20,
-                 from /usr/include/boost/range/iterator_range_core.hpp:38,
-                 from /usr/include/boost/range/iterator_range.hpp:13,
-                 from /usr/include/boost/iostreams/traits.hpp:38,
-                 from /usr/include/boost/iostreams/detail/call_traits.hpp:15,
-                 from /usr/include/boost/iostreams/detail/adapter/device_adapter.hpp:22,
-                 from /usr/include/boost/iostreams/tee.hpp:18,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:17,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:27,
-                 from /build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory/InfoBitRanker.h:15,
-                 from /build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory/InfoBitRanker.cpp:11:
-/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, int>*, vector<pair<double, int> > >; _Distance = int; _Tp = pair<double, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDInfoTheory::gtDIPair>]':
-/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
-  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
-      |     ^~~~~~~~~~~~~
-[  9%] Linking CXX executable pickersTestsCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/pickersTestsCatch.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/pickersTestsCatch.dir/link.d CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -o pickersTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSimDivPickers.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKithc.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 10%] Building CXX object Code/Numerics/CMakeFiles/testConrec.dir/testConrec.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/Numerics/CMakeFiles/testConrec.dir/testConrec.cpp.o -MF CMakeFiles/testConrec.dir/testConrec.cpp.o.d -o CMakeFiles/testConrec.dir/testConrec.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Numerics/testConrec.cpp
+[ 10%] Linking CXX shared module ../../../rdkit/rdBase.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdBase.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o  ../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  9%] Built target pickersTestsCatch
-make  -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
+[ 10%] Built target rdBase
+make  -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DataManip/MetricMatrixCalc/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
+make  -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  9%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ChemicalFeatures/FreeChemicalFeature.cpp
-[  9%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
+[ 10%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -MF CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o.d -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
+[ 10%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -MF CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/SparseIntVect.cpp
-[  9%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/InfoTheory.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2024.09.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o  ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2024.09.2 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so
+[ 10%] Linking CXX executable testConrec
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testConrec.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testConrec.dir/link.d CMakeFiles/testConrec.dir/testConrec.cpp.o -o testConrec  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  9%] Built target InfoTheory
-[  9%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/LeaderPicker.cpp
-In file included from /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:19:
-/build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/PickerHelpers.h: In member function 'double pyobjFunctor::operator()(unsigned int, unsigned int)':
-/build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/PickerHelpers.h:52:48: warning: '*(const double*)((char*)&<unnamed> + offsetof(boost::python::extract<double>,boost::python::extract<double>::<unnamed>.boost::python::converter::extract_rvalue<double>::m_data.boost::python::converter::rvalue_from_python_data<double>::<unnamed>.boost::python::converter::rvalue_from_python_storage<double>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-   52 |     return python::extract<double>(dp_obj(i, j));
-      |                                                ^
-/build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/PickerHelpers.h:52:48: note: '<anonymous>' declared here
-   52 |     return python::extract<double>(dp_obj(i, j));
-      |                                                ^
-[  9%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2024.09.2 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so
+[ 10%] Built target testConrec
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  9%] Built target ChemicalFeatures
-make  -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
+make  -f Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/build.make Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake "--color="
+[ 10%] Building CXX object Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/catch_tests.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:15:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h: In member function 'T PySequenceHolder<T>::operator[](unsigned int) const [with T = double]':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:9: warning: '*(const double*)((char*)&<unnamed> + offsetof(boost::python::extract<double>,boost::python::extract<double>::<unnamed>.boost::python::converter::extract_rvalue<double>::m_data.boost::python::converter::rvalue_from_python_data<double>::<unnamed>.boost::python::converter::rvalue_from_python_storage<double>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+   68 |       T res = python::extract<T>(d_seq[which]);
+      |         ^~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:23: note: '<anonymous>' declared here
+   68 |       T res = python::extract<T>(d_seq[which]);
+      |                       ^~~~~~~~~~~~~~~~~~~~~~~~
+[ 10%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
+[ 10%] Built target rdMetricMatrixCalc
+make  -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[  9%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o -MF CMakeFiles/GraphMol.dir/Atom.cpp.o.d -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.cpp
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 10%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
+[ 10%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -MF CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/Wrap/UniformGrid3D.cpp
 /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect<int>]':
 /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/SparseIntVect.cpp:193:16:   required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = int]'
   193 |     python::def("BulkDiceSimilarity", &BulkDice<SparseIntVect<IndexType>>,
@@ -3306,44 +3693,109 @@
 /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract<RDKit::SparseIntVect<long long unsigned int> >(boost::python::api::proxy<Policies>::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract<RDKit::SparseIntVect<long long unsigned int> >::boost::python::converter::extract_rvalue<RDKit::SparseIntVect<long long unsigned int> >.boost::python::converter::extract_rvalue<RDKit::SparseIntVect<long long unsigned int> >::operator()()'
   104 |     const T &siv2 = python::extract<T>(sivs[i])();
       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
-In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const long long unsigned int>]',
-    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Tp = long long unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
-    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
-    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; bool NoProxy = true; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:279:49:
-/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 2142 |       return __find_if(__first, __last, __pred,
-      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
- 2143 |                        std::__iterator_category(__first));
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const long long unsigned int>]',
-    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Tp = long long unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
-    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
-    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; bool NoProxy = true; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:286:53:
-/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 2142 |       return __find_if(__first, __last, __pred,
-      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
- 2143 |                        std::__iterator_category(__first));
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const long long unsigned int>]',
-    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Tp = long long unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
-    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
-    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; bool NoProxy = false; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:279:49:
-/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 2142 |       return __find_if(__first, __last, __pred,
-      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
- 2143 |                        std::__iterator_category(__first));
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const long long unsigned int>]',
-    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int, allocator<long long unsigned int> > >; _Tp = long long unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
-    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
-    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; bool NoProxy = false; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:286:53:
-/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 2142 |       return __find_if(__first, __last, __pred,
-      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
- 2143 |                        std::__iterator_category(__first));
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[  9%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -MF CMakeFiles/GraphMol.dir/QueryAtom.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/QueryAtom.cpp
+[ 10%] Linking CXX executable pickersTestsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/pickersTestsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/pickersTestsCatch.dir/link.d CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -o pickersTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSimDivPickers.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKithc.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 10%] Built target pickersTestsCatch
+make  -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 10%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -MF CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o.d -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory/InfoBitRanker.cpp
+In file included from /usr/include/c++/14/bits/stl_algo.h:61,
+                 from /usr/include/c++/14/algorithm:61,
+                 from /usr/include/boost/iterator/iterator_concepts.hpp:26,
+                 from /usr/include/boost/range/concepts.hpp:20,
+                 from /usr/include/boost/range/size_type.hpp:20,
+                 from /usr/include/boost/range/size.hpp:21,
+                 from /usr/include/boost/range/functions.hpp:20,
+                 from /usr/include/boost/range/iterator_range_core.hpp:38,
+                 from /usr/include/boost/range/iterator_range.hpp:13,
+                 from /usr/include/boost/iostreams/traits.hpp:38,
+                 from /usr/include/boost/iostreams/detail/call_traits.hpp:15,
+                 from /usr/include/boost/iostreams/detail/adapter/device_adapter.hpp:22,
+                 from /usr/include/boost/iostreams/tee.hpp:18,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:17,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:27,
+                 from /build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory/InfoBitRanker.h:15,
+                 from /build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory/InfoBitRanker.cpp:11:
+/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, int>*, vector<pair<double, int> > >; _Distance = int; _Tp = pair<double, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDInfoTheory::gtDIPair>]':
+/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
+  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
+      |     ^~~~~~~~~~~~~
+[ 10%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/InfoTheory.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2024.09.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o  ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2024.09.2 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 10%] Built target InfoTheory
+make  -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 10%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ChemicalFeatures/FreeChemicalFeature.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:19:
+/build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/PickerHelpers.h: In member function 'double pyobjFunctor::operator()(unsigned int, unsigned int)':
+/build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/PickerHelpers.h:52:48: warning: '*(const double*)((char*)&<unnamed> + offsetof(boost::python::extract<double>,boost::python::extract<double>::<unnamed>.boost::python::converter::extract_rvalue<double>::m_data.boost::python::converter::rvalue_from_python_data<double>::<unnamed>.boost::python::converter::rvalue_from_python_storage<double>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+   52 |     return python::extract<double>(dp_obj(i, j));
+      |                                                ^
+/build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/PickerHelpers.h:52:48: note: '<anonymous>' declared here
+   52 |     return python::extract<double>(dp_obj(i, j));
+      |                                                ^
+[ 10%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ChemicalFeatures.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2024.09.2 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o  ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2024.09.2 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 10%] Built target ChemicalFeatures
+make  -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o -MF CMakeFiles/GraphMol.dir/Atom.cpp.o.d -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.cpp
+[ 10%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/LeaderPicker.cpp
+[ 10%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -MF CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o.d -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/Wrap/rdGeometry.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/SparseIntVect.cpp:18:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h: In member function 'T PySequenceHolder<T>::operator[](unsigned int) const [with T = long long int]':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:9: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+   68 |       T res = python::extract<T>(d_seq[which]);
+      |         ^~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:23: note: '<anonymous>' declared here
+   68 |       T res = python::extract<T>(d_seq[which]);
+      |                       ^~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h: In member function 'T PySequenceHolder<T>::operator[](unsigned int) const [with T = long long unsigned int]':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:9: warning: '*(const long long unsigned int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long unsigned int>,boost::python::extract<long long unsigned int>::<unnamed>.boost::python::converter::extract_rvalue<long long unsigned int>::m_data.boost::python::converter::rvalue_from_python_data<long long unsigned int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long unsigned int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+   68 |       T res = python::extract<T>(d_seq[which]);
+      |         ^~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:23: note: '<anonymous>' declared here
+   68 |       T res = python::extract<T>(d_seq[which]);
+      |                       ^~~~~~~~~~~~~~~~~~~~~~~~
+[ 10%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 10%] Built target rdGeometry
+make  -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/Numerics/Alignment /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Alignment /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 10%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o -MF CMakeFiles/Alignment.dir/AlignPoints.cpp.o.d -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Numerics/Alignment/AlignPoints.cpp
 In file included from /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/LeaderPicker.cpp:19:
 In member function 'double pyobjFunctor::operator()(unsigned int, unsigned int)',
     inlined from 'unsigned int RDPickers::LeaderPickerState<T>::compact(int*, int*, unsigned int) [with T = pyobjFunctor]' at /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/LeaderPicker.h:263:18:
@@ -3354,94 +3806,64 @@
 /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/PickerHelpers.h:52:48: note: '<anonymous>' declared here
    52 |     return python::extract<double>(dp_obj(i, j));
       |                                                ^
-[  9%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
+[ 10%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp
-In file included from /usr/include/c++/14/vector:66:
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:134:28,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:128:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_delete_slice(Container&, PySliceObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:697:42,
-    inlined from 'static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_delete_item(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; bool NoProxy = true; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:256:49:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:134:28,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:128:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_delete_slice(Container&, PySliceObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:697:42,
-    inlined from 'static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_delete_item(Container&, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; bool NoProxy = false; bool NoSlice = false; Data = long long unsigned int; Index = unsigned int; Key = long long unsigned int]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:256:49:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const double>]',
-    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
-    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
-    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; bool NoProxy = true; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:279:49:
-/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 2142 |       return __find_if(__first, __last, __pred,
-      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
- 2143 |                        std::__iterator_category(__first));
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const double>]',
-    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
-    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
-    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; bool NoProxy = true; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:286:53:
-/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 2142 |       return __find_if(__first, __last, __pred,
-      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
- 2143 |                        std::__iterator_category(__first));
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const double>]',
-    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
-    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
-    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; bool NoProxy = false; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:279:49:
-/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 2142 |       return __find_if(__first, __last, __pred,
-      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
- 2143 |                        std::__iterator_category(__first));
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const double>]',
-    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
-    inlined from 'static bool boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::contains(Container&, const key_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:146:29,
-    inlined from 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; bool NoProxy = false; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:286:53:
-/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 2142 |       return __find_if(__first, __last, __pred,
-      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
- 2143 |                        std::__iterator_category(__first));
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[  9%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o -MF CMakeFiles/GraphMol.dir/QueryBond.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/QueryBond.cpp
-[  9%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
+[ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o
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+[ 10%] Linking CXX shared library ../../../lib/libRDKitAlignment.so
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+[ 10%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+[ 10%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp
-[ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o
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+[ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o
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+[ 10%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -MF CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o.d -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp
+[ 10%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
 [ 10%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdSimDivPickers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o  ../../../lib/libRDKitSimDivPickers.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../lib/libRDKithc.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 10%] Built target rdSimDivPickers
-[ 10%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/wrap_SparseBV.cpp
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::extend(Container&, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:200:29,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::base_extend(Container&, boost::python::api::object) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:236:36:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::extend(Container&, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:200:29,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::base_extend(Container&, boost::python::api::object) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:236:36:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-[ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o -MF CMakeFiles/GraphMol.dir/MolOps.cpp.o.d -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolOps.cpp
+make  -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+[ 10%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o
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+[ 11%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o
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+[ 11%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+make  -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 11%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -MF CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o.d -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ChemicalFeatures/testChemicalFeatures.cpp
 In file included from /usr/include/c++/14/memory:69,
                  from /usr/include/boost/iostreams/stream_buffer.hpp:15,
                  from /usr/include/boost/iostreams/stream.hpp:21,
@@ -3464,14 +3886,6 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:134:28,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:128:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_delete_slice(Container&, PySliceObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:697:42,
-    inlined from 'static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_delete_item(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; bool NoProxy = true; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:256:49:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*; bool _TrivialValueTypes = false]',
     inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
     inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*; _Tp = RDKit::Dict::Pair]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
@@ -3480,145 +3894,58 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:134:28,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::delete_slice(Container&, index_type, index_type) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:128:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_delete_slice(Container&, PySliceObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:697:42,
-    inlined from 'static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_delete_item(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; bool NoProxy = false; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]' at /usr/include/boost/python/suite/indexing/indexing_suite.hpp:256:49:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o -MF CMakeFiles/GraphMol.dir/FindRings.cpp.o.d -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FindRings.cpp
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/FindRings.cpp: In function 'void RDKit::MolOps::findRingFamilies(const RDKit::ROMol&)':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/FindRings.cpp:1342:36: warning: unused parameter 'mol' [-Wunused-parameter]
- 1342 | void findRingFamilies(const ROMol &mol) {
-      |                       ~~~~~~~~~~~~~^~~
-In file included from /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/SparseIntVect.cpp:18:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h: In member function 'T PySequenceHolder<T>::operator[](unsigned int) const [with T = long long int]':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:9: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-   68 |       T res = python::extract<T>(d_seq[which]);
-      |         ^~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:23: note: '<anonymous>' declared here
-   68 |       T res = python::extract<T>(d_seq[which]);
-      |                       ^~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
-/usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type 'std::vector<long long unsigned int, std::allocator<long long unsigned int> >::iterator' changed in GCC 7.1
-  452 |       vector<_Tp, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h: In member function 'T PySequenceHolder<T>::operator[](unsigned int) const [with T = long long unsigned int]':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:9: warning: '*(const long long unsigned int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long unsigned int>,boost::python::extract<long long unsigned int>::<unnamed>.boost::python::converter::extract_rvalue<long long unsigned int>::m_data.boost::python::converter::rvalue_from_python_data<long long unsigned int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long unsigned int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+[ 11%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o -MF CMakeFiles/GraphMol.dir/MolOps.cpp.o.d -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolOps.cpp
+[ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
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+[ 12%] Linking CXX executable testChemicalFeatures
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 12%] Built target testChemicalFeatures
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 12%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o
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+[ 12%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 12%] Built target rdInfoTheory
+make  -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/Numerics/Alignment/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 13%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o
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+[ 13%] Linking CXX executable testAlignment
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 13%] Built target testAlignment
+[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/wrap_FPB.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:16:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h: In member function 'T PySequenceHolder<T>::operator[](unsigned int) const [with T = double]':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:9: warning: '*(const double*)((char*)&<unnamed> + offsetof(boost::python::extract<double>,boost::python::extract<double>::<unnamed>.boost::python::converter::extract_rvalue<double>::m_data.boost::python::converter::rvalue_from_python_data<double>::<unnamed>.boost::python::converter::rvalue_from_python_storage<double>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
    68 |       T res = python::extract<T>(d_seq[which]);
       |         ^~~
 /build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:23: note: '<anonymous>' declared here
    68 |       T res = python::extract<T>(d_seq[which]);
       |                       ^~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
-/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
-      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
-/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
-      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:113:33,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:116:32,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:117:33,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, false> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
-/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
-      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
-/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
-      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:113:33,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:116:32,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; <template-parameter-2-2> = void; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:117:33,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<long long unsigned int, std::allocator<long long unsigned int> >; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true>, boost::python::detail::container_element<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<long long unsigned int, std::allocator<long long unsigned int> >, true> >, unsigned int>; Data = long long unsigned int; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >' changed in GCC 7.1
-[ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o -MF CMakeFiles/GraphMol.dir/ROMol.cpp.o.d -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ROMol.cpp
+[ 13%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdAlignment.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o  ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 13%] Built target rdAlignment
+[ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o -MF CMakeFiles/GraphMol.dir/FindRings.cpp.o.d -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FindRings.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/boost/graph/adjacency_list.hpp:16,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ROMol.h:29,
@@ -3636,8 +3963,6 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o -MF CMakeFiles/GraphMol.dir/RWMol.cpp.o.d -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.cpp
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
     inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
@@ -3659,16 +3984,43 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/FindRings.cpp: In function 'void RDKit::MolOps::findRingFamilies(const RDKit::ROMol&)':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/FindRings.cpp:1342:36: warning: unused parameter 'mol' [-Wunused-parameter]
+ 1342 | void findRingFamilies(const ROMol &mol) {
+      |                       ~~~~~~~~~~~~~^~~
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
     inlined from 'std::vector<std::unique_ptr<RDKit::ROMol> > RDKit::MolOps::{anonymous}::getTheFrags(const RDKit::ROMol&, bool, RDKit::INT_VECT*, RDKit::VECT_INT_VECT*, bool)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolOps.cpp:768:31:
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 10%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
-[ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o
+[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/wrap_Utils.cpp
+[ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o -MF CMakeFiles/GraphMol.dir/ROMol.cpp.o.d -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ROMol.cpp
+[ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o -MF CMakeFiles/GraphMol.dir/RWMol.cpp.o.d -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.cpp
+[ 13%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/cDataStructs.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o  ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 13%] Built target cDataStructs
+[ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -MF CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o.d -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PeriodicTable.cpp
+[ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o -MF CMakeFiles/GraphMol.dir/atomic_data.cpp.o.d -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/atomic_data.cpp
+In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
+                 from /usr/include/c++/14/bits/stl_tree.h:63,
+                 from /usr/include/c++/14/map:62,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PeriodicTable.h:14,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PeriodicTable.cpp:11:
+/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/PeriodicTable.cpp:96:57:   required from here
+   96 |         adata.d_isotopeInfoMap[isotope] = std::make_pair(mass, abundance);
+      |                                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+ 1132 |     make_pair(_T1&& __x, _T2&& __y)
+      |     ^~~~~~~~~
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -3677,6 +4029,15 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/14/vector:72,
+                 from /usr/include/boost/token_functions.hpp:34,
+                 from /usr/include/boost/token_iterator.hpp:24,
+                 from /usr/include/boost/tokenizer.hpp:20,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.cpp:11:
+/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
+/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
+  700 |     vector<_Tp, _Alloc>::
+      |     ^~~~~~~~~~~~~~~~~~~
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -3701,15 +4062,15 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/vector:72,
-                 from /usr/include/boost/token_functions.hpp:34,
-                 from /usr/include/boost/token_iterator.hpp:24,
-                 from /usr/include/boost/tokenizer.hpp:20,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.cpp:11:
-/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
-/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
-  700 |     vector<_Tp, _Alloc>::
-      |     ^~~~~~~~~~~~~~~~~~~
+[ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o -MF CMakeFiles/GraphMol.dir/QueryOps.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/QueryOps.cpp
+In file included from /usr/include/c++/14/vector:66:
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'unsigned int RDKit::RWMol::addAtom(bool)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.cpp:223:21:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*; bool _TrivialValueTypes = false]',
     inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
     inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*; _Tp = RDKit::Dict::Pair]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
@@ -3720,27 +4081,6 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
-                 from /usr/include/c++/14/bits/stl_tree.h:63,
-                 from /usr/include/c++/14/map:62,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PeriodicTable.h:14,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PeriodicTable.cpp:11:
-/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/PeriodicTable.cpp:96:57:   required from here
-   96 |         adata.d_isotopeInfoMap[isotope] = std::make_pair(mass, abundance);
-      |                                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
- 1132 |     make_pair(_T1&& __x, _T2&& __y)
-      |     ^~~~~~~~~
-[ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o -MF CMakeFiles/GraphMol.dir/atomic_data.cpp.o.d -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/atomic_data.cpp
-In file included from /usr/include/c++/14/vector:66:
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'unsigned int RDKit::RWMol::addAtom(bool)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.cpp:223:21:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 In file included from /usr/include/c++/14/vector:65:
 /usr/include/c++/14/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*]':
 /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
@@ -3764,6 +4104,8 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -MF CMakeFiles/GraphMol.dir/MolPickler.cpp.o.d -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolPickler.cpp
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
     inlined from 'void RDKit::RWMol::insertMol(const RDKit::ROMol&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.cpp:186:26:
@@ -3776,146 +4118,22 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 11%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/wrap_BitOps.cpp
-[ 11%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o -MF CMakeFiles/GraphMol.dir/QueryOps.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/QueryOps.cpp
-[ 11%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -MF CMakeFiles/GraphMol.dir/MolPickler.cpp.o.d -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolPickler.cpp
-[ 11%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/wrap_FPB.cpp
+[ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -MF CMakeFiles/GraphMol.dir/Canon.cpp.o.d -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Canon.cpp
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolPickler.cpp: In function 'void RDKit::streamReadPositiveChar(std::istream&, char&, int)':
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolPickler.cpp:72:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
    72 |   if (res < 0) {
       |       ~~~~^~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::extend(Container&, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:200:29,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::base_extend(Container&, boost::python::api::object) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:236:36:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::extend(Container&, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:200:29,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::base_extend(Container&, boost::python::api::object) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:236:36:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
-/usr/include/c++/14/bits/vector.tcc:452:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
-  452 |       vector<_Tp, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
-/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
-      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
-/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
-      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:113:33,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:116:32,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:117:33,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:639:43:
-/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
-      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:102:32,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:103:33,
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:95:9,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:648:47:
-/usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-  170 |         _M_realloc_insert(begin() + (__position - cbegin()), __x);
-      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:113:33,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:116:32,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1568:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1568 |         return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
-      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, index_type, index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]' at /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:117:33,
-    inlined from 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, true>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, true> >, unsigned int>; Data = double; Index = unsigned int]' at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47:
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1488 |           _M_range_insert(begin() + __offset, __first, __last,
-      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1489 |                           std::__iterator_category(__first));
-      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-[ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o
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+[ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o
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+[ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o
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+[ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o
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+[ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o -MF CMakeFiles/GraphMol.dir/Kekulize.cpp.o.d -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Kekulize.cpp
+[ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -MF CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o.d -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ConjugHybrid.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -3925,8 +4143,6 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-[ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/wrap_Utils.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -3934,113 +4150,18 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -MF CMakeFiles/GraphMol.dir/AtomIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/AtomIterators.cpp
-[ 12%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
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-[ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o
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-[ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -MF CMakeFiles/GraphMol.dir/Aromaticity.cpp.o.d -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Aromaticity.cpp
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   147 |         numNonCandRings < numAtomRings) {
       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/Numerics/CMakeFiles/testConrec.dir/testConrec.cpp.o -MF CMakeFiles/testConrec.dir/testConrec.cpp.o.d -o CMakeFiles/testConrec.dir/testConrec.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Numerics/testConrec.cpp
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 13%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Alignment && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o -MF CMakeFiles/testAlignment.dir/testAlignment.cpp.o.d -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Numerics/Alignment/testAlignment.cpp
-[ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o
+[ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o -MF CMakeFiles/GraphMol.dir/Chirality.cpp.o.d -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Chirality.cpp
+[ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o -MF CMakeFiles/GraphMol.dir/RingInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RingInfo.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -4050,32 +4171,8 @@
 /usr/include/c++/14/bits/vector.tcc:181:5: note: parameter passing for argument of type 'std::vector<RDKit::Dict::Pair>::iterator' changed in GCC 7.1
   181 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
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+[ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o -MF CMakeFiles/GraphMol.dir/Conformer.cpp.o.d -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.cpp
 /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
@@ -4086,6 +4183,8 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o -MF CMakeFiles/GraphMol.dir/Renumber.cpp.o.d -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Renumber.cpp
 In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = RDKit::Dict::Pair; _Alloc = std::allocator<RDKit::Dict::Pair>]',
     inlined from 'void RDKit::Dict::clearVal(const std::string&)' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:320:20,
     inlined from 'void RDKit::RDProps::clearProp(const std::string&) const' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDProps.h:145:21:
@@ -4141,77 +4240,10 @@
 /usr/include/c++/14/bits/stl_vector.h:1537:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
  1537 |       { return _M_erase(begin() + (__position - cbegin())); }
       |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -MF CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Geometry/Wrap/UniformGrid3D.cpp
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-In file included from /build/reproducible-path/rdkit-202409.2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:16:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h: In member function 'T PySequenceHolder<T>::operator[](unsigned int) const [with T = double]':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:9: warning: '*(const double*)((char*)&<unnamed> + offsetof(boost::python::extract<double>,boost::python::extract<double>::<unnamed>.boost::python::converter::extract_rvalue<double>::m_data.boost::python::converter::rvalue_from_python_data<double>::<unnamed>.boost::python::converter::rvalue_from_python_storage<double>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-   68 |       T res = python::extract<T>(d_seq[which]);
-      |         ^~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/PySequenceHolder.h:68:23: note: '<anonymous>' declared here
-   68 |       T res = python::extract<T>(d_seq[which]);
-      |                       ^~~~~~~~~~~~~~~~~~~~~~~~
-[ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o -MF CMakeFiles/GraphMol.dir/Conformer.cpp.o.d -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.cpp
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 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/boost/graph/adjacency_list.hpp:16,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ROMol.h:29,
@@ -4228,6 +4260,10 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -MF CMakeFiles/GraphMol.dir/StereoGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/StereoGroup.cpp
+[ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o -MF CMakeFiles/GraphMol.dir/new_canon.cpp.o.d -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/new_canon.cpp
 [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o
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@@ -4250,44 +4286,36 @@
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/GenericGroups /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GenericGroups /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/DependInfo.cmake "--color="
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+[ 16%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -MF CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o.d -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/MolTransforms.cpp
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Trajectory /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake "--color="
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o -MF CMakeFiles/Trajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Trajectory/Trajectory.cpp
-[ 16%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/CIPMol.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -4324,23 +4352,36 @@
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 16%] Built target Trajectory
+make  -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 16%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/CIPMol.cpp
+[ 16%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
+[ 16%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolTransforms.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 16%] Built target MolTransforms
 make  -f Code/GraphMol/CMakeFiles/tableTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/tableTestsCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/tableTestsCatch.dir/DependInfo.cmake "--color="
-[ 16%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/CIPLabeler.cpp
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 make  -f Code/GraphMol/CMakeFiles/tableTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/tableTestsCatch.dir/build
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 [ 16%] Building CXX object Code/GraphMol/CMakeFiles/tableTestsCatch.dir/catch_periodictable.cpp.o
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-[ 16%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
-[ 16%] Linking CXX executable tableTestsCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/tableTestsCatch.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/tableTestsCatch.dir/link.d CMakeFiles/tableTestsCatch.dir/catch_periodictable.cpp.o -o tableTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitGraphMol.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 16%] Linking CXX shared library ../../../lib/libRDKitGenericGroups.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/GenericGroups.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/GenericGroups.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitGenericGroups.so.1 -o ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1 ../../../lib/libRDKitGenericGroups.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 16%] Built target tableTestsCatch
+[ 16%] Built target GenericGroups
 make  -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake "--color="
@@ -4349,12 +4390,13 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 16%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -MF CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o.d -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Subgraphs/Subgraphs.cpp
-[ 16%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolTransforms.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
+[ 16%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/CIPLabeler.cpp
+[ 16%] Linking CXX executable tableTestsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/tableTestsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/tableTestsCatch.dir/link.d CMakeFiles/tableTestsCatch.dir/catch_periodictable.cpp.o -o tableTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitGraphMol.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 16%] Built target MolTransforms
+[ 16%] Built target tableTestsCatch
 make  -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake "--color="
@@ -4363,21 +4405,9 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp
-[ 17%] Linking CXX shared library ../../../lib/libRDKitGenericGroups.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/GenericGroups.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/GenericGroups.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitGenericGroups.so.1 -o ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1 ../../../lib/libRDKitGenericGroups.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 17%] Built target GenericGroups
-make  -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake "--color="
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-make  -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 17%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -MF CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o.d -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp
-[ 17%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o
+[ 18%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -MF CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o.d -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp
+[ 18%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -MF CMakeFiles/CIPLabeler.dir/Mancude.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Mancude.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges/GasteigerCharges.h:14,
@@ -4402,14 +4432,12 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 18%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -MF CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o.d -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp
-[ 18%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges/GasteigerParams.cpp
-[ 18%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -MF CMakeFiles/CIPLabeler.dir/Digraph.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Digraph.cpp
 [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/SmilesWrite.cpp
+[ 19%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges/GasteigerParams.cpp
+[ 19%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -MF CMakeFiles/CIPLabeler.dir/Digraph.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Digraph.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Subgraphs/Subgraphs.h:32,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Subgraphs/SubgraphUtils.h:14,
@@ -4418,10 +4446,6 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-[ 19%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
-[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o -MF CMakeFiles/CIPLabeler.dir/Node.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Node.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Node.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -4430,26 +4454,50 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 19%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/Subgraphs.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 19%] Built target Subgraphs
+make  -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 19%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -MF CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o.d -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp
+[ 19%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/PartialCharges.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 20%] Built target PartialCharges
+[ 19%] Built target PartialCharges
 make  -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-[ 20%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o
+[ 19%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
-[ 20%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so
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+[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o -MF CMakeFiles/CIPLabeler.dir/Node.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Node.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Node.cpp
+[ 20%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
+[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o -MF CMakeFiles/CIPLabeler.dir/Edge.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Edge.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Edge.cpp
+[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o -MF CMakeFiles/CIPLabeler.dir/Sort.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Sort.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Sort.cpp
+[ 20%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/SmartsWrite.cpp
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+[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/configs/Configuration.cpp
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
-[ 20%] Built target Subgraphs
-[ 20%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
+[ 20%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ShapeHelpers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2024.09.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o  ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2024.09.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 20%] Built target ShapeHelpers
 make  -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake "--color="
@@ -4471,12 +4521,10 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 20%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/External/rapidjson-1.1.0/include -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o -MF CMakeFiles/MolInterchange.dir/Parser.cpp.o.d -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange/Parser.cpp
-[ 20%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
-[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o -MF CMakeFiles/CIPLabeler.dir/Edge.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Edge.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Edge.cpp
-[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o -MF CMakeFiles/CIPLabeler.dir/Sort.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Sort.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Sort.cpp
+[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp
+[ 20%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
 [ 20%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolCatalog.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2024.09.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -4491,26 +4539,10 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 20%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o -MF CMakeFiles/SLNParse.dir/SLNParse.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse/SLNParse.cpp
-[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/configs/Configuration.cpp
-[ 20%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ShapeHelpers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2024.09.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o  ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2024.09.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
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-[ 20%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
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-[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o
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+[ 20%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -MF CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp
+[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -4526,26 +4558,10 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 20%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
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-[ 20%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -MF CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp
 [ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/AtropisomerBond.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/AtropisomerBond.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/AtropisomerBond.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/AtropisomerBond.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/configs/AtropisomerBond.cpp
 [ 20%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/External/rapidjson-1.1.0/include -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o -MF CMakeFiles/MolInterchange.dir/Writer.cpp.o.d -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange/Writer.cpp
-[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp
-[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp
-[ 20%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o -MF CMakeFiles/SLNParse.dir/sln.tab.cpp.o.d -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse/sln.tab.cpp
-[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/c++/14/functional:64,
                  from /usr/include/boost/algorithm/string/detail/classification.hpp:17,
@@ -4557,13 +4573,67 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
+[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp
+[ 20%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -MF CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse/SLNAttribs.cpp
+[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp
+[ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp
 [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule3.cpp
-[ 21%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdqueries.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp
+In file included from /usr/include/c++/14/vector:66:
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'bool SmilesParseOps::parser::parse_coords(Iterator&, Iterator, RDKit::RWMol&, unsigned int, unsigned int) [with Iterator = __gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> >]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp:451:23:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 21%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o -MF CMakeFiles/SLNParse.dir/sln.tab.cpp.o.d -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse/sln.tab.cpp
+[ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp
+[ 21%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o -MF CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o.d -o CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/CanonicalizeStereoGroups.cpp
+[ 21%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolInterchange.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolInterchange.so.1 -o ../../../lib/libRDKitMolInterchange.so.1.2024.09.2 CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.so.1.2024.09.2 ../../../lib/libRDKitMolInterchange.so.1 ../../../lib/libRDKitMolInterchange.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 21%] Built target rdqueries
+[ 21%] Built target MolInterchange
+make  -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 21%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o -MF CMakeFiles/rdqueries.dir/rdqueries.cpp.o.d -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/rdqueries.cpp
+[ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp
+[ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o
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+[ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o
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+[ 21%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
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+[ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule6.cpp
+[ 21%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
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+[ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o
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+[ 21%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
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+[ 21%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2024.09.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 make  -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake "--color="
@@ -4572,16 +4642,12 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 22%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o
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-[ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp
-[ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp
-[ 22%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.so.1.2024.09.2 ../../../lib/libRDKitMolInterchange.so.1 ../../../lib/libRDKitMolInterchange.so
+[ 22%] Linking CXX shared library ../../../lib/libRDKitCIPLabeler.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_link_script CMakeFiles/CIPLabeler.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/CIPLabeler.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitCIPLabeler.so.1 -o ../../../lib/libRDKitCIPLabeler.so.1.2024.09.2 CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o CMakeFiles/CIPLabeler.dir/Node.cpp.o CMakeFiles/CIPLabeler.dir/Edge.cpp.o CMakeFiles/CIPLabeler.dir/Sort.cpp.o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/CIPLabeler.dir/configs/AtropisomerBond.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitCIPLabeler.so.1.2024.09.2 ../../../lib/libRDKitCIPLabeler.so.1 ../../../lib/libRDKitCIPLabeler.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 22%] Built target MolInterchange
+[ 22%] Built target CIPLabeler
 make  -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ChemicalFeatures/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake "--color="
@@ -4590,27 +4656,17 @@
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -MF CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o.d -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp
-[ 22%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -MF CMakeFiles/SLNParse.dir/lex.yysln.cpp.o.d -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse/lex.yysln.cpp
-[ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp
 [ 23%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o
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-[ 23%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule5.cpp
-In file included from /usr/include/c++/14/vector:66:
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'bool SmilesParseOps::parser::parse_coords(Iterator&, Iterator, RDKit::RWMol&, unsigned int, unsigned int) [with Iterator = __gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> >]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp:451:23:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 23%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2024.09.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
+[ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/smiles.tab.cpp
+[ 23%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -MF CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o.d -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/rdTrajectory.cpp
+[ 23%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 23%] Built target SLNParse
+[ 23%] Built target rdqueries
 make  -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake "--color="
@@ -4619,23 +4675,13 @@
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-[ 23%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o
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-[ 23%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o
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-[ 23%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule6.cpp
-[ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o -MF CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o.d -o CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/CanonicalizeStereoGroups.cpp
-[ 23%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o
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-[ 23%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so
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+[ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1
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+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdChemicalFeatures.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o  ../../../lib/libRDKitChemicalFeatures.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 23%] Built target rdtrajectory
+[ 23%] Built target rdChemicalFeatures
 make  -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/Numerics/Optimizer /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake "--color="
@@ -4644,9 +4690,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 23%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -MF CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o.d -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Numerics/Optimizer/BFGSOpt.cpp
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdChemicalFeatures.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o  ../../../lib/libRDKitChemicalFeatures.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 23%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdtrajectory.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o  ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 23%] Built target rdChemicalFeatures
+[ 23%] Built target rdtrajectory
 make  -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake "--color="
@@ -4657,12 +4705,14 @@
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -MF CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o.d -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
 [ 24%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -MF CMakeFiles/Optimizer.dir/LinearSearch.cpp.o.d -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Numerics/Optimizer/LinearSearch.cpp
-[ 24%] Linking CXX shared library ../../../lib/libRDKitCIPLabeler.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_link_script CMakeFiles/CIPLabeler.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitCIPLabeler.so.1.2024.09.2 ../../../lib/libRDKitCIPLabeler.so.1 ../../../lib/libRDKitCIPLabeler.so
+[ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -MF CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o.d -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
+[ 24%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/Optimizer.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2024.09.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o  ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 24%] Built target CIPLabeler
+[ 24%] Built target Optimizer
 make  -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake "--color="
@@ -4671,14 +4721,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 24%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -MF CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o.d -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
-[ 24%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
-[ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/smarts.tab.cpp
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/Optimizer.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2024.09.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o  ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so
+[ 24%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdPartialCharges.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o  ../../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 24%] Built target Optimizer
+[ 24%] Built target rdPartialCharges
 make  -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake "--color="
@@ -4689,11 +4736,12 @@
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -MF CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o.d -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
 [ 24%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct/SubstructUtils.cpp
-[ 24%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdPartialCharges.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o  ../../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 24%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/SmilesParse.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o  ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 24%] Built target rdPartialCharges
+[ 24%] Built target SmilesParse
 make  -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/DependInfo.cmake "--color="
@@ -4702,8 +4750,6 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 24%] Building CXX object Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdCIPLabeler_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -MF CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o.d -o CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Wrap/rdCIPLabeler.cpp
-[ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/smiles.tab.cpp
 [ 24%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdShapeHelpers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o  ../../../../lib/libRDKitShapeHelpers.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -4730,25 +4776,25 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 24%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -MF CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o.d -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
-[ 24%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/SubstructMatch.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o  ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
+[ 25%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolCatalog.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o  ../../../../lib/libRDKitMolCatalog.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitCatalogs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 24%] Built target SubstructMatch
+[ 25%] Built target rdMolCatalog
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 25%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o
+[ 26%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -MF CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o.d -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/Numerics/Optimizer/testOptimizer.cpp
-[ 26%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolCatalog.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o  ../../../../lib/libRDKitMolCatalog.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitCatalogs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 26%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/SubstructMatch.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o  ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 26%] Built target rdMolCatalog
+[ 26%] Built target SubstructMatch
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ForceField /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake "--color="
@@ -4757,233 +4803,207 @@
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o -MF CMakeFiles/ForceField.dir/ForceField.cpp.o.d -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/ForceField.cpp
-[ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
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-[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o
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-[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o
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-[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Utils.cpp.o
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-[ 27%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
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-[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/BondStretch.cpp
-[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o
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-[ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o
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-/build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/StretchBend.cpp: In function 'std::pair<double, double> ForceFields::MMFF::Utils::calcStbnForceConstants(const ForceFields::MMFF::MMFFStbn*)':
-/build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/StretchBend.cpp:27:35: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
-   27 |     const MMFFStbn *mmffStbnParams) {
-      |                                   ^
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-[ 28%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
+[ 26%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -MF CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o.d -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/querytest.cpp
+[ 26%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdSLNParse.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o  ../../../../lib/libRDKitSLNParse.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 26%] Built target rdSLNParse
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-[ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
+[ 27%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -MF CMakeFiles/graphmolIterTest.dir/itertest.cpp.o.d -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/itertest.cpp
-[ 29%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
+[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/AngleConstraints.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/AngleConstraints.cpp.o -MF CMakeFiles/ForceField.dir/AngleConstraints.cpp.o.d -o CMakeFiles/ForceField.dir/AngleConstraints.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/AngleConstraints.cpp
+[ 27%] Linking CXX executable graphmolcpTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmolcpTest.dir/link.d CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest  ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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-[ 29%] Built target MolAlign
+[ 27%] Built target graphmolcpTest
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-[ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
+[ 27%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -MF CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o.d -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/memtest1.cpp
-[ 29%] Linking CXX executable graphmolcpTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
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+[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/DistanceConstraint.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/DistanceConstraint.cpp.o -MF CMakeFiles/ForceField.dir/DistanceConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/DistanceConstraint.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/DistanceConstraint.cpp
+[ 27%] Linking CXX executable graphmolIterTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmolIterTest.dir/link.d CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest  ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 29%] Built target graphmolcpTest
+[ 27%] Built target graphmolIterTest
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-[ 29%] Building CXX object Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o
+[ 27%] Building CXX object Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -MF CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o.d -o CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_moliterators.cpp
-[ 29%] Linking CXX shared library ../../lib/libRDKitForceField.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2024.09.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so
+[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/DistanceConstraints.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/DistanceConstraints.cpp.o -MF CMakeFiles/ForceField.dir/DistanceConstraints.cpp.o.d -o CMakeFiles/ForceField.dir/DistanceConstraints.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/DistanceConstraints.cpp
+[ 27%] Linking CXX executable graphmolMemTest1
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmolMemTest1.dir/link.d CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1  ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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-[ 29%] Building CXX object Code/GraphMol/CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o
+[ 27%] Building CXX object Code/GraphMol/CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -MF CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o.d -o CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_queries.cpp
-[ 29%] Linking CXX executable graphmolMemTest1
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+[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/PositionConstraint.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/PositionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/PositionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/PositionConstraint.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/PositionConstraint.cpp
+[ 27%] Linking CXX executable moliteratorTestsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/moliteratorTestsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/moliteratorTestsCatch.dir/link.d CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -o moliteratorTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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+[ 27%] Built target moliteratorTestsCatch
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-[ 29%] Building CXX object Code/GraphMol/CMakeFiles/molbundleTestsCatch.dir/catch_molbundle.cpp.o
+[ 27%] Building CXX object Code/GraphMol/CMakeFiles/molbundleTestsCatch.dir/catch_molbundle.cpp.o
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-[ 29%] Linking CXX executable graphmolIterTest
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+[ 27%] Linking CXX executable graphmolqueryTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
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+[ 27%] Built target graphmolqueryTest
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-[ 29%] Building CXX object Code/GraphMol/CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o
+[ 27%] Building CXX object Code/GraphMol/CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o -MF CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o.d -o CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_molops.cpp
-[ 29%] Linking CXX executable moliteratorTestsCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/moliteratorTestsCatch.dir/link.txt --verbose=1
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+[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/TorsionConstraint.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/TorsionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/TorsionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/TorsionConstraint.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/TorsionConstraint.cpp
+[ 27%] Linking CXX executable queryTestsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/queryTestsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/queryTestsCatch.dir/link.d CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -o queryTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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+[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o
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+[ 27%] Linking CXX executable molbundleTestsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molbundleTestsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molbundleTestsCatch.dir/link.d CMakeFiles/molbundleTestsCatch.dir/catch_molbundle.cpp.o -o molbundleTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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-[ 29%] Built target queryTestsCatch
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-[ 29%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o
+[ 27%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o
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-[ 29%] Linking CXX executable graphmolqueryTest
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+[ 27%] Linking CXX executable smiTest2
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest2.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 29%] Built target graphmolqueryTest
+[ 27%] Built target smiTest2
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-[ 29%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
+[ 27%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -MF CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o.d -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Fingerprints.cpp
-[ 29%] Linking CXX executable smiTest2
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest2.dir/link.txt --verbose=1
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+[ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/UFF/BondStretch.cpp
+[ 28%] Linking CXX executable molopsTestsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molopsTestsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molopsTestsCatch.dir/link.d CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o -o molopsTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 29%] Built target smiTest2
+[ 28%] Built target molopsTestsCatch
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-[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o
+[ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o -MF CMakeFiles/smaTest1.dir/smatest.cpp.o.d -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/smatest.cpp
-[ 30%] Linking CXX executable molopsTestsCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molopsTestsCatch.dir/link.txt --verbose=1
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+[ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o
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+[ 29%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
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+[ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o
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+[ 29%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -MF CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o.d -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
+[ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversions.cpp.o
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+[ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o
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+[ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o
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+[ 30%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
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+[ 30%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
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+[ 30%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Utils.cpp.o
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+[ 30%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
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+[ 30%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o
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+[ 30%] Linking CXX executable smaTest1
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 30%] Built target molopsTestsCatch
+[ 30%] Built target smaTest1
 make  -f Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/DependInfo.cmake "--color="
@@ -4992,71 +5012,101 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/v2catch_tests.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/v2catch_tests.cpp.o -MF CMakeFiles/v2smiTestCatch.dir/v2catch_tests.cpp.o.d -o CMakeFiles/v2smiTestCatch.dir/v2catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/v2catch_tests.cpp
-[ 30%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
-[ 30%] Linking CXX executable molbundleTestsCatch
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+[ 30%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o
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+[ 30%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
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+[ 30%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o
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+[ 31%] Linking CXX executable v2smiTestCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/v2smiTestCatch.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 30%] Built target molbundleTestsCatch
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-[ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o
+[ 31%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o
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+/build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/StretchBend.cpp: In function 'std::pair<double, double> ForceFields::MMFF::Utils::calcStbnForceConstants(const ForceFields::MMFF::MMFFStbn*)':
+/build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/StretchBend.cpp:27:35: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+   27 |     const MMFFStbn *mmffStbnParams) {
+      |                                   ^
+[ 32%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o
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+[ 32%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o
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+[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o
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+[ 32%] Linking CXX executable testSubgraphs1
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake "--color="
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-[ 31%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o
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-[ 31%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
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-[ 31%] Linking CXX executable testSubgraphs1
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+[ 32%] Linking CXX executable testSubgraphs2
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+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testSubgraphs2.dir/link.d CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2  ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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-[ 31%] Built target testSubgraphs1
+[ 32%] Built target testSubgraphs2
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-[ 31%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o
+[ 32%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Subgraphs/catch_tests.cpp
-[ 31%] Linking CXX executable testSubgraphs2
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testSubgraphs2.dir/link.d CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2  ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -MF CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
+In file included from /usr/include/c++/14/map:62,
+                 from /build/reproducible-path/rdkit-202409.2/Code/DataStructs/SparseIntVect.h:14,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:11:
+/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::vector<std::vector<int> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >]':
+/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::vector<int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > > >::const_iterator' changed in GCC 7.1
+ 2206 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
+      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]':
+/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
+[ 32%] Linking CXX executable subgraphsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/subgraphsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/subgraphsCatch.dir/link.d CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o -o subgraphsCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 31%] Built target testSubgraphs2
+[ 32%] Built target subgraphsCatch
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+[ 32%] Linking CXX shared library ../../lib/libRDKitForceField.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
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-[ 31%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o
+[ 32%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
-[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -MF CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o.d -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
-[ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
-[ 32%] Linking CXX executable subgraphsCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/subgraphsCatch.dir/link.txt --verbose=1
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+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ForceField.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2024.09.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/AngleConstraints.cpp.o CMakeFiles/ForceField.dir/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/DistanceConstraints.cpp.o CMakeFiles/ForceField.dir/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/Inversions.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/UFF/Utils.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o  ../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2024.09.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 32%] Built target subgraphsCatch
+[ 32%] Built target ForceField
 make  -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake "--color="
@@ -5065,17 +5115,14 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 32%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o -MF CMakeFiles/testPartialCharges.dir/test1.cpp.o.d -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges/test1.cpp
-[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/AtomPairs.cpp
-[ 32%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
-[ 32%] Linking CXX executable testPartialCharges
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
-[ 32%] Linking CXX executable smaTest1
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testPartialCharges.dir/link.d CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges  ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp
+[ 32%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/FilterCatalog.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o  ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 32%] Built target testPartialCharges
+[ 32%] Built target FilterCatalog
 make  -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake "--color="
@@ -5084,9 +5131,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 32%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/smaTest1.dir/link.d CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1  ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 32%] Linking CXX executable testPartialCharges
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testPartialCharges.dir/link.d CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges  ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 32%] Built target smaTest1
+[ 32%] Built target testPartialCharges
 make  -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ReducedGraphs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake "--color="
@@ -5096,6 +5145,48 @@
 [ 32%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -MF CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o.d -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
 In file included from /usr/include/c++/14/set:62,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Query/SetQuery.h:13,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Query/QueryObjects.h:29,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:24,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:23,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:11:
+/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long unsigned int&&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]':
+/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
+ 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 32%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
+[ 32%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
+In file included from /usr/include/c++/14/map:63,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:25:
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::pair<unsigned int, unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]',
+    inlined from 'void RDKit::AtomPair::AtomPairAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:82:56:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::pair<unsigned int, unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]',
+    inlined from 'void RDKit::AtomPair::AtomPairAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:82:56:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MorganGenerator.cpp
+[ 33%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
+[ 33%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
+In file included from /usr/include/c++/14/set:62,
                  from /usr/include/boost/graph/adjacency_list.hpp:18,
                  from /build/reproducible-path/rdkit-202409.2/Code/Catalogs/Catalog.h:18,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp:10:
@@ -5103,6 +5194,8 @@
 /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator' changed in GCC 7.1
  2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ReducedGraphs.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2024.09.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o  ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2024.09.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
 In file included from /usr/include/c++/14/map:63,
                  from /usr/include/boost/pending/container_traits.hpp:21,
                  from /usr/include/boost/graph/named_graph.hpp:23,
@@ -5125,6 +5218,16 @@
       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   515 |                                             std::tuple<>());
       |                                             ~~~~~~~~~~~~~~~
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 33%] Built target ReducedGraphs
+make  -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 33%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o -MF CMakeFiles/testSLNParse.dir/test.cpp.o.d -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse/test.cpp
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = int; _Compare = RDKit::ltDouble; _Alloc = std::allocator<std::pair<const double, int> >]',
     inlined from 'unsigned int RDKit::addHigherOrderPaths(const INT_PATH_LIST_MAP&, const ROMol&, FragCatalog*, DOUBLE_INT_MAP&, const MatchVectType&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp:161:30:
 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator' changed in GCC 7.1
@@ -5161,40 +5264,44 @@
       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   515 |                                             std::tuple<>());
       |                                             ~~~~~~~~~~~~~~~
-[ 32%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
-[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o -MF CMakeFiles/Fingerprints.dir/MACCS.cpp.o.d -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MACCS.cpp
-[ 32%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
+In file included from /usr/include/c++/14/set:62,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Query/SetQuery.h:13,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Query/QueryObjects.h:29,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:24,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:23,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MorganGenerator.cpp:11:
+/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long unsigned int&&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]':
+/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
+ 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 33%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
-[ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/FilterCatalogRunner.cpp
-[ 32%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ReducedGraphs.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2024.09.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o  ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2024.09.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 32%] Built target ReducedGraphs
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake "--color="
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-[ 32%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o -MF CMakeFiles/testSLNParse.dir/test.cpp.o.d -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse/test.cpp
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-[ 33%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragCatParams.cpp
-[ 33%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o -MF CMakeFiles/Fingerprints.dir/MHFP.cpp.o.d -o CMakeFiles/Fingerprints.dir/MHFP.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MHFP.cpp
-[ 33%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
 [ 33%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
-[ 34%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
+In file included from /usr/include/c++/14/map:63,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:25:
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::pair<unsigned int, unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]',
+    inlined from 'void RDKit::MorganFingerprint::MorganAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MorganGenerator.cpp:128:56:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::pair<unsigned int, unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]',
+    inlined from 'void RDKit::MorganFingerprint::MorganAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MorganGenerator.cpp:128:56:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+[ 33%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h:15,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/FeatureParser.h:18,
@@ -5205,10 +5312,23 @@
       |       ^~~~~~~~~~~~~~~~~~~
 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
 /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
-[ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp
-[ 34%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -MF CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
+[ 33%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragCatParams.cpp
+In file included from /usr/include/c++/14/bits/stl_tree.h:63,
+                 from /usr/include/c++/14/map:62,
+                 from /build/reproducible-path/rdkit-202409.2/Code/DataStructs/SparseIntVect.h:14,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:15,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:11:
+/usr/include/c++/14/bits/stl_algobase.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const unsigned int>]':
+/usr/include/c++/14/bits/stl_algobase.h:2089:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 2089 |     __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
+      |     ^~~~~~~~~
+/usr/include/c++/14/bits/stl_algobase.h:2089:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long unsigned int&&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::vector<std::vector<int> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >]':
+/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::vector<int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > > >::const_iterator' changed in GCC 7.1
+ 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 In file included from /usr/include/c++/14/vector:66:
 In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
     inlined from 'void RDKit::MolChemicalFeatureDef::setWeights(const std::vector<double>&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h:45:21,
@@ -5219,28 +5339,82 @@
  1489 |                           std::__iterator_category(__first));
       |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 /usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
-[ 34%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so
+In file included from /usr/include/c++/14/map:63:
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::vector<int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >]',
+    inlined from 'void RDKit::RDKitFP::RDKitFPAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:95:51:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::vector<int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const unsigned int>]',
+    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Tp = unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
+    inlined from 'void RDKit::RDKitFP::RDKitFPAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:102:24:
+/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 2142 |       return __find_if(__first, __last, __pred,
+      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+ 2143 |                        std::__iterator_category(__first));
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::vector<int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >]',
+    inlined from 'void RDKit::RDKitFP::RDKitFPAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:95:51:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::vector<int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const unsigned int>]',
+    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Tp = unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
+    inlined from 'void RDKit::RDKitFP::RDKitFPAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:102:24:
+/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 2142 |       return __find_if(__first, __last, __pred,
+      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+ 2143 |                        std::__iterator_category(__first));
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 33%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/FingerprintUtil.cpp
+[ 33%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
-In file included from /usr/include/c++/14/set:62,
-                 from /usr/include/boost/graph/adjacency_list.hpp:18,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Catalogs/Catalog.h:18,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp:10:
-/usr/include/c++/14/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const double&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, int>; _KeyOfValue = std::_Select1st<std::pair<const double, int> >; _Compare = RDKit::ltDouble; _Alloc = std::allocator<std::pair<const double, int> >]':
-/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator' changed in GCC 7.1
- 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolChemicalFeatures.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2024.09.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o  ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2024.09.2 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 34%] Built target MolChemicalFeatures
+[ 33%] Built target MolChemicalFeatures
 make  -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Abbreviations /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 make  -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 34%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o
+[ 33%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations && /usr/bin/c++ -DAbbreviations_EXPORTS -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o -MF CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o.d -o CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Abbreviations/Abbreviations.cpp
+[ 34%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
+[ 34%] Linking CXX executable testSLNParse
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testSLNParse.dir/link.d CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse  ../../../lib/libRDKitSLNParse.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 34%] Built target testSLNParse
+make  -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 34%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -MF CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o.d -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/AlignMolecules.cpp
+[ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp
+In file included from /usr/include/c++/14/set:62,
+                 from /usr/include/boost/graph/adjacency_list.hpp:18,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Catalogs/Catalog.h:18,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp:10:
+/usr/include/c++/14/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const double&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, int>; _KeyOfValue = std::_Select1st<std::pair<const double, int> >; _Compare = RDKit::ltDouble; _Alloc = std::allocator<std::pair<const double, int> >]':
+/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator' changed in GCC 7.1
+ 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 In file included from /usr/include/c++/14/map:63,
                  from /usr/include/boost/pending/container_traits.hpp:21,
                  from /usr/include/boost/graph/named_graph.hpp:23,
@@ -5305,54 +5479,183 @@
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2024.09.2 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 34%] Built target FragCatalog
+make  -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 34%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
+[ 34%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations && /usr/bin/c++ -DAbbreviations_EXPORTS -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -MF CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o.d -o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Abbreviations/AbbreviationsUtils.cpp
+[ 35%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/Fingerprints.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2024.09.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/MHFP.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o  ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 35%] Built target Fingerprints
+make  -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 36%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -MF CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o.d -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
+[ 36%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
+[ 36%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
+[ 36%] Linking CXX shared library ../../../lib/libRDKitAbbreviations.so
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolAlign.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2024.09.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o  ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations && /usr/bin/cmake -E cmake_link_script CMakeFiles/Abbreviations.dir/link.txt --verbose=1
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 36%] Built target MolAlign
+make  -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 36%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -MF CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o.d -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/Abbreviations.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitAbbreviations.so.1 -o ../../../lib/libRDKitAbbreviations.so.1.2024.09.2 CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o  ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAbbreviations.so.1.2024.09.2 ../../../lib/libRDKitAbbreviations.so.1 ../../../lib/libRDKitAbbreviations.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 36%] Built target Abbreviations
+make  -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 37%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMHFPFingerprint_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -MF CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o.d -o CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp
+[ 37%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -MF CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o.d -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
+[ 37%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
+In file included from /usr/include/boost/python/override.hpp:13,
+                 from /usr/include/boost/python/wrapper.hpp:8,
+                 from /usr/include/boost/python/object/value_holder.hpp:15,
+                 from /usr/include/boost/python/object/class_metadata.hpp:14,
+                 from /usr/include/boost/python/class.hpp:23,
+                 from /usr/include/boost/python.hpp:18,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp:11:
+In member function 'boost::python::converter::extract_rvalue<T>::result_type boost::python::converter::extract_rvalue<T>::operator()() const [with T = unsigned int]',
+    inlined from 'ValueT boost::python::stl_input_iterator<ValueT>::dereference() const [with ValueT = unsigned int]' at /usr/include/boost/python/stl_iterator.hpp:48:60,
+    inlined from 'static typename Facade::reference boost::iterators::iterator_core_access::dereference(const Facade&) [with Facade = boost::python::stl_input_iterator<unsigned int>]' at /usr/include/boost/iterator/iterator_facade.hpp:631:31,
+    inlined from 'boost::iterators::detail::iterator_facade_base<Derived, Value, CategoryOrTraversal, Reference, Difference, false, false>::reference boost::iterators::detail::iterator_facade_base<Derived, Value, CategoryOrTraversal, Reference, Difference, false, false>::operator*() const [with Derived = boost::python::stl_input_iterator<unsigned int>; Value = unsigned int; CategoryOrTraversal = std::input_iterator_tag; Reference = unsigned int; Difference = int]' at /usr/include/boost/iterator/iterator_facade.hpp:737:53,
+    inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::python::stl_input_iterator<unsigned int>; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:1675:21,
+    inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::python::stl_input_iterator<unsigned int>; <template-parameter-2-2> = void; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:711:23,
+    inlined from 'std::vector<T> RDKit::MHFPWrapper::ListToVector(const boost::python::api::object&) [with T = unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp:28:56:
+/usr/include/boost/python/extract.hpp:185:11: warning: '*(unsigned int*)((char*)&<unnamed> + offsetof(boost::python::extract<unsigned int>,boost::python::extract<unsigned int>::<unnamed>.boost::python::converter::extract_rvalue<unsigned int>::m_data.boost::python::converter::rvalue_from_python_data<unsigned int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<unsigned int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |           );
+      |           ^
+In file included from /usr/include/boost/python.hpp:66:
+/usr/include/boost/python/stl_iterator.hpp: In function 'std::vector<T> RDKit::MHFPWrapper::ListToVector(const boost::python::api::object&) [with T = unsigned int]':
+/usr/include/boost/python/stl_iterator.hpp:48:16: note: '<anonymous>' declared here
+   48 |         return extract<ValueT>(this->impl_.current().get())();
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 37%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
+[ 37%] Linking CXX shared module ../../../../rdkit/Chem/rdMHFPFingerprint.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMHFPFingerprint.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMHFPFingerprint.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMHFPFingerprint.so CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o  ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 37%] Built target rdMHFPFingerprint
+make  -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp: In function 'void RDKit::MMFF::Tools::addStretchBend(const RDKit::ROMol&, RDKit::MMFF::MMFFMolProperties*, ForceFields::ForceField*)':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp:419:68: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+  419 |                 MMFF::Utils::calcStbnForceConstants(&mmffStbnParams);
+      |                                                                    ^
+[ 37%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdFingerprintGenerator.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o  ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 37%] Built target rdFingerprintGenerator
+make  -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ReducedGraphs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 37%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o -MF CMakeFiles/testReducedGraphs.dir/test1.cpp.o.d -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ReducedGraphs/test1.cpp
+[ 37%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
+[ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
+[ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
+[ 39%] Linking CXX executable testReducedGraphs
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testReducedGraphs.dir/link.d CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs  ../../../lib/libRDKitReducedGraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Built target testReducedGraphs
+make  -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ReducedGraphs/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
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+[ 39%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
+[ 39%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleContribs.cpp
+[ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Built target rdReducedGraphs
+make  -f Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build.make Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Abbreviations/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Building CXX object Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAbbreviations_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -MF CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o.d -o CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Abbreviations/Wrap/rdAbbreviations.cpp
+[ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Built target rdfiltercatalog
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-[ 34%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o
+[ 39%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o -MF CMakeFiles/Depictor.dir/RDDepictor.cpp.o.d -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/RDDepictor.cpp
-[ 34%] Linking CXX executable testSLNParse
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+[ 39%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ForceFieldHelpers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o  ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
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-[ 34%] Building CXX object External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o
+[ 39%] Building CXX object External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o
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-In file included from /usr/include/c++/14/map:62,
-                 from /build/reproducible-path/rdkit-202409.2/Code/DataStructs/SparseIntVect.h:14,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:11:
-/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::vector<std::vector<int> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >]':
-/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::vector<int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > > >::const_iterator' changed in GCC 7.1
- 2206 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
-      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]':
-/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
-[ 34%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/FilterCatalog.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o  ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 34%] Built target FilterCatalog
-make  -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 34%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
-[ 34%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations && /usr/bin/c++ -DAbbreviations_EXPORTS -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -MF CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o.d -o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Abbreviations/AbbreviationsUtils.cpp
-[ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp
+[ 39%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct/SubstructMatch.h:15,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/RDDepictor.h:15,
@@ -5374,6 +5677,25 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'unsigned int RDDepict::compute2DCoords(RDKit::ROMol&, const Compute2DCoordParameters&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/RDDepictor.cpp:650:22:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolChemicalFeatures.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o  ../../../../lib/libRDKitMolChemicalFeatures.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Built target rdMolChemicalFeatures
+make  -f Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/build.make Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ForceField /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/build.make Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Building CXX object Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/catch_tests.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/c++/14/functional:64,
                  from /usr/include/boost/config/no_tr1/functional.hpp:21,
@@ -5399,79 +5721,47 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'unsigned int RDDepict::compute2DCoords(RDKit::ROMol&, const Compute2DCoordParameters&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/RDDepictor.cpp:650:22:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 34%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
-[ 34%] Linking CXX shared module ../../../rdkit/Chem/rdCoordGen.so
+[ 39%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -MF CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o.d -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/EmbeddedFrag.cpp
+[ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdAbbreviations.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAbbreviations.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdAbbreviations.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdAbbreviations.so CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o  ../../../../lib/libRDKitAbbreviations.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Built target rdAbbreviations
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DistGeom /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -MF CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/DistGeomUtils.cpp
+[ 39%] Linking CXX shared module ../../../rdkit/Chem/rdCoordGen.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/CoordGen/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdCoordGen.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdCoordGen.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/Chem/rdCoordGen.so CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o  /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 34%] Built target rdCoordGen
-make  -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
+[ 39%] Built target rdCoordGen
+make  -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ForceField/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
+make  -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 35%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -MF CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o.d -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
-[ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -MF CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o.d -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/EmbeddedFrag.cpp
-In file included from /usr/include/c++/14/set:62,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Query/SetQuery.h:13,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Query/QueryObjects.h:29,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:24,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:23,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:11:
-/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long unsigned int&&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]':
-/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
- 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 35%] Linking CXX shared library ../../../lib/libRDKitAbbreviations.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations && /usr/bin/cmake -E cmake_link_script CMakeFiles/Abbreviations.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/Abbreviations.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitAbbreviations.so.1 -o ../../../lib/libRDKitAbbreviations.so.1.2024.09.2 CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o  ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAbbreviations.so.1.2024.09.2 ../../../lib/libRDKitAbbreviations.so.1 ../../../lib/libRDKitAbbreviations.so
+[ 39%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o -MF CMakeFiles/rdForceField.dir/ForceField.cpp.o.d -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/Wrap/ForceField.cpp
+[ 39%] Linking CXX executable ForceFieldsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/ForceFieldsCatch.dir/link.d CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o -o ForceFieldsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitForceField.so.1.2024.09.2 ../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 35%] Built target Abbreviations
-make  -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
+[ 39%] Built target ForceFieldsCatch
+make  -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
+make  -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 35%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
-In file included from /usr/include/c++/14/map:63,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:25:
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::pair<unsigned int, unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]',
-    inlined from 'void RDKit::AtomPair::AtomPairAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:82:56:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::pair<unsigned int, unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]',
-    inlined from 'void RDKit::AtomPair::AtomPairAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:82:56:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
-[ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MorganGenerator.cpp
-[ 35%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -MF CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o.d -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
+[ 39%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o -MF CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/catch_tests.cpp
 In file included from /usr/include/c++/14/map:62,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
@@ -5480,8 +5770,6 @@
 /usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator' changed in GCC 7.1
  2206 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 35%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
 /usr/include/c++/14/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const unsigned int&>, std::tuple<>}; _Key = unsigned int; _Val = std::pair<const unsigned int, RDDepict::EmbeddedAtom>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]':
 /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator' changed in GCC 7.1
  2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
@@ -5522,6 +5810,8 @@
       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   515 |                                             std::tuple<>());
       |                                             ~~~~~~~~~~~~~~~
+[ 39%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -MF CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o.d -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/TriangleSmooth.cpp
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = RDDepict::EmbeddedAtom; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]',
     inlined from 'void RDDepict::EmbeddedFrag::reflectIfNecessaryDensity(RDDepict::EmbeddedFrag&, unsigned int, unsigned int)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/EmbeddedFrag.cpp:793:35:
 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator' changed in GCC 7.1
@@ -6029,16 +6319,6 @@
       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   515 |                                             std::tuple<>());
       |                                             ~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/set:62,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Query/SetQuery.h:13,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Query/QueryObjects.h:29,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:24,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:23,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MorganGenerator.cpp:11:
-/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long unsigned int&&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]':
-/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
- 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = RDDepict::EmbeddedAtom; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]',
     inlined from 'std::vector<std::pair<int, int> > RDDepict::EmbeddedFrag::findCollisions(const double*, bool)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/EmbeddedFrag.cpp:1680:32:
 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator' changed in GCC 7.1
@@ -6273,8 +6553,6 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
-[ 35%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = RDDepict::EmbeddedAtom; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]',
     inlined from 'void RDDepict::EmbeddedFrag::updateNewNeighs(unsigned int)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/EmbeddedFrag.cpp:255:15:
 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator' changed in GCC 7.1
@@ -6356,6 +6634,8 @@
       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   515 |                                             std::tuple<>());
       |                                             ~~~~~~~~~~~~~~~
+[ 39%] Linking CXX executable forceFieldHelpersCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceFieldHelpersCatch.dir/link.txt --verbose=1
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = RDDepict::EmbeddedAtom; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]',
     inlined from 'RDDepict::EmbeddedFrag::EmbeddedFrag(const RDKit::ROMol*, const RDGeom::INT_POINT2D_MAP&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/EmbeddedFrag.cpp:96:17:
 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator' changed in GCC 7.1
@@ -6365,28 +6645,19 @@
       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   515 |                                             std::tuple<>());
       |                                             ~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/map:63,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:25:
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::pair<unsigned int, unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]',
-    inlined from 'void RDKit::MorganFingerprint::MorganAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MorganGenerator.cpp:128:56:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::pair<unsigned int, unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]',
-    inlined from 'void RDKit::MorganFingerprint::MorganAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/MorganGenerator.cpp:128:56:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/forceFieldHelpersCatch.dir/link.d CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o -o forceFieldHelpersCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Built target forceFieldHelpersCatch
+make  -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -MF CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o.d -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
+[ 39%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -MF CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/DistViolationContrib.cpp
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = RDDepict::EmbeddedAtom; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]',
     inlined from 'RDDepict::EmbeddedFrag::EmbeddedFrag(unsigned int, const RDKit::ROMol*)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/EmbeddedFrag.cpp:55:15:
 /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator' changed in GCC 7.1
@@ -6576,203 +6847,112 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
-[ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp
-[ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o
+[ 39%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o -MF CMakeFiles/Depictor.dir/DepictUtils.cpp.o.d -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/DepictUtils.cpp
-[ 35%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
-In file included from /usr/include/c++/14/bits/stl_tree.h:63,
-                 from /usr/include/c++/14/map:62,
-                 from /build/reproducible-path/rdkit-202409.2/Code/DataStructs/SparseIntVect.h:14,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:15,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:11:
-/usr/include/c++/14/bits/stl_algobase.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const unsigned int>]':
-/usr/include/c++/14/bits/stl_algobase.h:2089:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 2089 |     __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
-      |     ^~~~~~~~~
-/usr/include/c++/14/bits/stl_algobase.h:2089:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
-/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long unsigned int&&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::vector<std::vector<int> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >]':
-/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::vector<int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > > >::const_iterator' changed in GCC 7.1
- 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 35%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
-In file included from /usr/include/c++/14/map:63:
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::vector<int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >]',
-    inlined from 'void RDKit::RDKitFP::RDKitFPAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:95:51:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::vector<int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
-In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const unsigned int>]',
-    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Tp = unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
-    inlined from 'void RDKit::RDKitFP::RDKitFPAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:102:24:
-/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 2142 |       return __find_if(__first, __last, __pred,
-      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
- 2143 |                        std::__iterator_category(__first));
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long long unsigned int; _Tp = std::vector<std::vector<int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >]',
-    inlined from 'void RDKit::RDKitFP::RDKitFPAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:95:51:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::vector<std::vector<int> > >, std::_Select1st<std::pair<const long long unsigned int, std::vector<std::vector<int> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::vector<std::vector<int> > > > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
-In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const unsigned int>]',
-    inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Tp = unsigned int]' at /usr/include/c++/14/bits/stl_algo.h:3849:28,
-    inlined from 'void RDKit::RDKitFP::RDKitFPAtomEnv<OutputType>::updateAdditionalOutput(RDKit::AdditionalOutput*, size_t) const [with OutputType = unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:102:24:
-/usr/include/c++/14/bits/stl_algobase.h:2142:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 2142 |       return __find_if(__first, __last, __pred,
-      |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
- 2143 |                        std::__iterator_category(__first));
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/FingerprintUtil.cpp
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp: In function 'void RDKit::MMFF::Tools::addStretchBend(const RDKit::ROMol&, RDKit::MMFF::MMFFMolProperties*, ForceFields::ForceField*)':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp:419:68: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
-  419 |                 MMFF::Utils::calcStbnForceConstants(&mmffStbnParams);
-      |                                                                    ^
-[ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o
+[ 39%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o -MF CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/DistViolationContribs.cpp
+[ 39%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -MF CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o.d -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/ChiralViolationContrib.cpp
+[ 39%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 39%] Built target rdForceField
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o -MF CMakeFiles/Depictor.dir/Templates.cpp.o.d -o CMakeFiles/Depictor.dir/Templates.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/Templates.cpp
-[ 35%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
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-[ 35%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
-[ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp
-[ 35%] Linking CXX shared library ../../../lib/libRDKitDepictor.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
-[ 36%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
+[ 39%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o -MF CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o.d -o CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/ChiralViolationContribs.cpp
+[ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 36%] Built target Depictor
-make  -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ReducedGraphs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake "--color="
+[ 39%] Built target rdForceFieldHelpers
+[ 39%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
+[ 39%] Built target DistGeometry
+make  -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
+make  -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
+make  -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 36%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o -MF CMakeFiles/testReducedGraphs.dir/test1.cpp.o.d -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ReducedGraphs/test1.cpp
-[ 36%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolChemicalFeatures.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o  ../../../../lib/libRDKitMolChemicalFeatures.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 36%] Built target rdMolChemicalFeatures
-make  -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake "--color="
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DistGeom /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake "--color="
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DistGeom/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake "--color="
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+make  -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 36%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -MF CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o.d -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
-[ 37%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/Fingerprints.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2024.09.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/MHFP.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o  ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 37%] Built target Fingerprints
-make  -f Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build.make Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/depend
+make  -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build.make Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build
+make  -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 37%] Building CXX object Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAbbreviations_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -MF CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o.d -o CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Abbreviations/Wrap/rdAbbreviations.cpp
-[ 38%] Linking CXX executable testReducedGraphs
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+[ 39%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
+[ 39%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o -MF CMakeFiles/DistGeom.dir/DistGeom.cpp.o.d -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/Wrap/DistGeom.cpp
+[ 39%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -MF CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o.d -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/testDistGeom.cpp
+[ 39%] Linking CXX shared library ../../../lib/libRDKitDepictor.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/Depictor.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2024.09.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o CMakeFiles/Depictor.dir/Templates.cpp.o  /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
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-[ 38%] Built target testReducedGraphs
+[ 39%] Built target Depictor
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-[ 39%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o
+[ 40%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/INCHI-API && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDInchiLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDINCHILIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o -MF CMakeFiles/RDInchiLib.dir/inchi.cpp.o.d -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /build/reproducible-path/rdkit-202409.2/External/INCHI-API/inchi.cpp
-[ 39%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleContribs.cpp
-[ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
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+[ 40%] Linking CXX executable testDistGeom
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testDistGeom.dir/link.d CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom  ../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../lib/libRDKitForceField.so.1.2024.09.2 ../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 39%] Built target rdReducedGraphs
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-[ 39%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
+[ 40%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -MF CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o.d -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
-[ 39%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
+[ 40%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/DistGeom.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o  ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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-[ 39%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
+[ 40%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DIN_COORDGEN -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -MF CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o.d -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
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-[ 39%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -MF CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o.d -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp
-[ 39%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.so
+[ 40%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Embedder.cpp
+[ 40%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/RDInchiLib.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitRDInchiLib.so.1 -o ../../lib/libRDKitRDInchiLib.so.1.2024.09.2 CMakeFiles/RDInchiLib.dir/inchi.cpp.o  /usr/lib/arm-linux-gnueabihf/libinchi.so ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2024.09.2 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so
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-[ 40%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMHFPFingerprint_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -MF CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o.d -o CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp
-[ 40%] Linking CXX shared module ../../../../rdkit/Chem/rdAbbreviations.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAbbreviations.dir/link.txt --verbose=1
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+[ 40%] Built target RDInchiLib
+make  -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolHash /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake "--color="
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+make  -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 40%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o -MF CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/catch_tests.cpp
+[ 40%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o -MF CMakeFiles/MolHash.dir/hashfunctions.cpp.o.d -o CMakeFiles/MolHash.dir/hashfunctions.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolHash/hashfunctions.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -6803,60 +6983,59 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 40%] Linking CXX executable forceFieldHelpersCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceFieldHelpersCatch.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/forceFieldHelpersCatch.dir/link.d CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o -o forceFieldHelpersCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 40%] Built target forceFieldHelpersCatch
-make  -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake "--color="
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-[ 40%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -MF CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o.d -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
+In file included from /usr/include/c++/14/vector:72,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Geometry/point.h:16,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Embedder.h:17,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Embedder.cpp:11:
+/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
+/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
+  700 |     vector<_Tp, _Alloc>::
+      |     ^~~~~~~~~~~~~~~~~~~
+[ 40%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -MF CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o.d -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
 [ 40%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1
+In file included from /usr/include/c++/14/vector:66:
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'void RDKit::DGeomHelpers::detail::embedHelper_(int, int, EmbedArgs*, RDKit::DGeomHelpers::EmbedParameters*)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Embedder.cpp:1360:27:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 40%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o -MF CMakeFiles/MolHash.dir/normalize.cpp.o.d -o CMakeFiles/MolHash.dir/normalize.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolHash/normalize.cpp
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdDepictor.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o  ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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 [ 40%] Built target rdDepictor
-make  -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
+make  -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/External/INCHI-API/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/INCHI-API/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake "--color="
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 40%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o -MF CMakeFiles/MolHash.dir/hashfunctions.cpp.o.d -o CMakeFiles/MolHash.dir/hashfunctions.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolHash/hashfunctions.cpp
-[ 40%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -MF CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o.d -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
-In file included from /usr/include/boost/python/override.hpp:13,
-                 from /usr/include/boost/python/wrapper.hpp:8,
-                 from /usr/include/boost/python/object/value_holder.hpp:15,
-                 from /usr/include/boost/python/object/class_metadata.hpp:14,
-                 from /usr/include/boost/python/class.hpp:23,
-                 from /usr/include/boost/python.hpp:18,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp:11:
-In member function 'boost::python::converter::extract_rvalue<T>::result_type boost::python::converter::extract_rvalue<T>::operator()() const [with T = unsigned int]',
-    inlined from 'ValueT boost::python::stl_input_iterator<ValueT>::dereference() const [with ValueT = unsigned int]' at /usr/include/boost/python/stl_iterator.hpp:48:60,
-    inlined from 'static typename Facade::reference boost::iterators::iterator_core_access::dereference(const Facade&) [with Facade = boost::python::stl_input_iterator<unsigned int>]' at /usr/include/boost/iterator/iterator_facade.hpp:631:31,
-    inlined from 'boost::iterators::detail::iterator_facade_base<Derived, Value, CategoryOrTraversal, Reference, Difference, false, false>::reference boost::iterators::detail::iterator_facade_base<Derived, Value, CategoryOrTraversal, Reference, Difference, false, false>::operator*() const [with Derived = boost::python::stl_input_iterator<unsigned int>; Value = unsigned int; CategoryOrTraversal = std::input_iterator_tag; Reference = unsigned int; Difference = int]' at /usr/include/boost/iterator/iterator_facade.hpp:737:53,
-    inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::python::stl_input_iterator<unsigned int>; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:1675:21,
-    inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::python::stl_input_iterator<unsigned int>; <template-parameter-2-2> = void; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:711:23,
-    inlined from 'std::vector<T> RDKit::MHFPWrapper::ListToVector(const boost::python::api::object&) [with T = unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp:28:56:
-/usr/include/boost/python/extract.hpp:185:11: warning: '*(unsigned int*)((char*)&<unnamed> + offsetof(boost::python::extract<unsigned int>,boost::python::extract<unsigned int>::<unnamed>.boost::python::converter::extract_rvalue<unsigned int>::m_data.boost::python::converter::rvalue_from_python_data<unsigned int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<unsigned int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |           );
-      |           ^
-In file included from /usr/include/boost/python.hpp:66:
-/usr/include/boost/python/stl_iterator.hpp: In function 'std::vector<T> RDKit::MHFPWrapper::ListToVector(const boost::python::api::object&) [with T = unsigned int]':
-/usr/include/boost/python/stl_iterator.hpp:48:16: note: '<anonymous>' declared here
-   48 |         return extract<ValueT>(this->impl_.current().get())();
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 40%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o -MF CMakeFiles/MolHash.dir/normalize.cpp.o.d -o CMakeFiles/MolHash.dir/normalize.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolHash/normalize.cpp
-[ 40%] Linking CXX shared module ../../../../rdkit/Chem/rdMHFPFingerprint.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMHFPFingerprint.dir/link.txt --verbose=1
+[ 41%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/INCHI-API/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o -MF CMakeFiles/rdinchi.dir/pyInchi.cpp.o.d -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /build/reproducible-path/rdkit-202409.2/External/INCHI-API/Wrap/pyInchi.cpp
+[ 41%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/EmbedderUtils.cpp
+[ 41%] Linking CXX shared library ../../../lib/libRDKitMolHash.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolHash.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2024.09.2 CMakeFiles/MolHash.dir/hashfunctions.cpp.o CMakeFiles/MolHash.dir/normalize.cpp.o  ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2024.09.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 41%] Built target MolHash
+make  -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolHash/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 41%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -MF CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o.d -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
+[ 41%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdinchi.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o  ../../../lib/libRDKitRDInchiLib.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libinchi.so ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 41%] Built target rdinchi
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/boost/graph/adjacency_list.hpp:16,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ROMol.h:29,
@@ -6866,17 +7045,6 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMHFPFingerprint.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMHFPFingerprint.so CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o  ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 40%] Built target rdMHFPFingerprint
-make  -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/External/INCHI-API/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/INCHI-API/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 41%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/INCHI-API/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o -MF CMakeFiles/rdinchi.dir/pyInchi.cpp.o.d -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /build/reproducible-path/rdkit-202409.2/External/INCHI-API/Wrap/pyInchi.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -6890,97 +7058,43 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdForceFieldHelpers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o  ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 41%] Built target rdForceFieldHelpers
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ForceField /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/build.make Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 41%] Building CXX object Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/catch_tests.cpp
-[ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdFingerprintGenerator.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o  ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 42%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/DistGeomHelpers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o  ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 41%] Built target rdFingerprintGenerator
-make  -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DistGeom /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake "--color="
+[ 42%] Built target DistGeomHelpers
+[ 42%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolHash.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o  ../../../../lib/libRDKitMolHash.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 41%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -MF CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/DistGeomUtils.cpp
+[ 42%] Built target rdMolHash
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
     inlined from 'std::unique_ptr<RDKit::ROMol> RDKit::molzip(std::vector<boost::shared_ptr<ROMol> >&, const MolzipParams&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:1145:28:
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 41%] Linking CXX shared library ../../../lib/libRDKitMolHash.so
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2024.09.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
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-[ 41%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so
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-[ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o
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-[ 41%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -MF CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o.d -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/TriangleSmooth.cpp
-[ 41%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -MF CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/DistViolationContrib.cpp
-[ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
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-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 41%] Built target rdMolHash
-[ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
+[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
+[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MolFileParser.cpp
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -MF CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MolSGroupParsing.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -7001,8 +7115,6 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-[ 41%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o -MF CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/DistViolationContribs.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -7010,10 +7122,10 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -MF CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MolSGroupParsing.cpp
-[ 42%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -MF CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o.d -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/ChiralViolationContrib.cpp
+[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o
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+[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MolFileStereochem.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -7021,25 +7133,6 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 42%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdForceField.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o  ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 42%] Built target rdForceField
-[ 42%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o -MF CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o.d -o CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/ChiralViolationContribs.cpp
-[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -MF CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MolSGroupWriting.cpp
-[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MolFileStereochem.cpp
-[ 42%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/DistGeometry.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2024.09.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o  ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../lib/libRDKitForceField.so.1.2024.09.2 ../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 42%] Built target DistGeometry
-[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MolFileWriter.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/c++/14/functional:64,
                  from /usr/include/boost/numeric/conversion/converter_policies.hpp:13,
@@ -7053,12 +7146,10 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o
+[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MolFileWriter.cpp
+[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
-[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SDMolSupplier.cpp
-[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o -MF CMakeFiles/FileParsers.dir/SDWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SDWriter.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -7066,8 +7157,8 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
+[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SDMolSupplier.cpp
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
     inlined from 'void RDKit::{anonymous}::ParseMolBlockAtoms(std::istream*, unsigned int&, unsigned int, RDKit::RWMol*, RDKit::Conformer*, bool)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MolFileParser.cpp:1832:21,
@@ -7075,14 +7166,20 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
+[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o -MF CMakeFiles/FileParsers.dir/SDWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SDWriter.cpp
+[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
+[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -MF CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SmilesWriter.cpp
-[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
+[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
-[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
+[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -MF CMakeFiles/FileParsers.dir/TDTWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/TDTWriter.cpp
-[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
+[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/TplFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/TplFileParser.cpp
+[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/TplFileWriter.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/boost/token_functions.hpp:34,
                  from /usr/include/boost/token_iterator.hpp:24,
@@ -7092,8 +7189,6 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/TplFileWriter.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -7107,11 +7202,11 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o
+[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o -MF CMakeFiles/FileParsers.dir/PDBParser.cpp.o.d -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/PDBParser.cpp
-[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o
+[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -MF CMakeFiles/FileParsers.dir/PDBWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/PDBWriter.cpp
-[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o
+[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o -MF CMakeFiles/FileParsers.dir/CMLWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/CMLWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/CMLWriter.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/c++/14/functional:64,
@@ -7139,14 +7234,6 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-make  -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 43%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/c++/14/functional:64,
                  from /usr/include/boost/numeric/conversion/converter_policies.hpp:13,
@@ -7168,37 +7255,18 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-make  -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/DistGeom /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 43%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -MF CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o.d -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/DistGeom/testDistGeom.cpp
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
     inlined from 'void RDKit::{anonymous}::PDBAtomLine(RDKit::RWMol*, const char*, unsigned int, unsigned int, std::map<int, RDKit::Atom*>&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/PDBParser.cpp:200:21:
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o
+[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/XYZFileWriter.cpp
-[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o
+[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/XYZFileParser.cpp
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+[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MaeMolSupplier.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/c++/14/functional:64,
                  from /usr/include/boost/numeric/conversion/converter_policies.hpp:13,
@@ -7212,12 +7280,6 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
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-[ 43%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/EmbedderUtils.cpp
-[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MaeMolSupplier.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -7225,15 +7287,14 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -MF CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o.d -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/ProximityBonds.cpp
+[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -MF CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o.d -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SequenceParsers.cpp
+[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -MF CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o.d -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SequenceWriters.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/c++/14/functional:64,
                  from /usr/include/boost/unordered/unordered_set_fwd.hpp:16,
@@ -7245,10 +7306,8 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -MF CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o.d -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SequenceParsers.cpp
-[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -MF CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o.d -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SequenceWriters.cpp
+[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o -MF CMakeFiles/FileParsers.dir/SVGParser.cpp.o.d -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SVGParser.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -7258,14 +7317,8 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/vector:72,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Geometry/point.h:16,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Embedder.h:17,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Embedder.cpp:11:
-/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
-/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
-  700 |     vector<_Tp, _Alloc>::
-      |     ^~~~~~~~~~~~~~~~~~~
+[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o -MF CMakeFiles/FileParsers.dir/PNGParser.cpp.o.d -o CMakeFiles/FileParsers.dir/PNGParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/PNGParser.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -7276,25 +7329,18 @@
 /usr/include/c++/14/bits/vector.tcc:181:5: note: parameter passing for argument of type 'std::vector<RDKit::Dict::Pair>::iterator' changed in GCC 7.1
   181 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o -MF CMakeFiles/FileParsers.dir/SVGParser.cpp.o.d -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SVGParser.cpp
-In file included from /usr/include/c++/14/vector:66:
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'void RDKit::DGeomHelpers::detail::embedHelper_(int, int, EmbedArgs*, RDKit::DGeomHelpers::EmbedParameters*)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Embedder.cpp:1360:27:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 45%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/DistGeomHelpers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o  ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 45%] Built target DistGeomHelpers
-[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o -MF CMakeFiles/FileParsers.dir/PNGParser.cpp.o.d -o CMakeFiles/FileParsers.dir/PNGParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/PNGParser.cpp
 [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MultithreadedMolSupplier.cpp
+In file included from /usr/include/c++/14/vector:72,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:27,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/utils.h:15,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SVGParser.cpp:10:
+/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
+/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
+  700 |     vector<_Tp, _Alloc>::
+      |     ^~~~~~~~~~~~~~~~~~~
 In file included from /usr/include/c++/14/vector:66:
 In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = RDKit::Dict::Pair; _Alloc = std::allocator<RDKit::Dict::Pair>]',
     inlined from 'void RDKit::Dict::clearVal(const std::string&)' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:320:20,
@@ -7302,8 +7348,6 @@
 /usr/include/c++/14/bits/stl_vector.h:1537:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
  1537 |       { return _M_erase(begin() + (__position - cbegin())); }
       |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.cpp
 In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = RDKit::Dict::Pair; _Alloc = std::allocator<RDKit::Dict::Pair>]',
     inlined from 'void RDKit::Dict::clearVal(const std::string&)' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:320:20,
     inlined from 'void RDKit::RDProps::clearComputedProps() const' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDProps.h:154:25,
@@ -7311,18 +7355,6 @@
 /usr/include/c++/14/bits/stl_vector.h:1537:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
  1537 |       { return _M_erase(begin() + (__position - cbegin())); }
       |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/vector:72,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:27,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/utils.h:15,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/SVGParser.cpp:10:
-/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
-/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
-  700 |     vector<_Tp, _Alloc>::
-      |     ^~~~~~~~~~~~~~~~~~~
-[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MultithreadedSDMolSupplier.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -7331,6 +7363,10 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.cpp
+[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/MultithreadedSDMolSupplier.cpp
 [ 46%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/FileParsers.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2024.09.2 CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/CMLWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeWriter.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o CMakeFiles/FileParsers.dir/PNGParser.cpp.o CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o  ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -7341,41 +7377,33 @@
 make  -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
 make  -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
 make  -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
-make  -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/External/CoordGen /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/CoordGen /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/CoordGen/CMakeFiles/testCoordGen.dir/DependInfo.cmake "--color="
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ForceField/UFF /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/UFF /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake "--color="
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/MMFF /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake "--color="
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/ForceField/UFF /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/UFF /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake "--color="
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-make  -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 46%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
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-[ 47%] Building CXX object External/CoordGen/CMakeFiles/testCoordGen.dir/test.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -MF CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o.d -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/molopstest.cpp
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/MMFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -MF CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o.d -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/testMMFFForceField.cpp
+[ 47%] Building CXX object External/CoordGen/CMakeFiles/testCoordGen.dir/test.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/CoordGen && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT External/CoordGen/CMakeFiles/testCoordGen.dir/test.cpp.o -MF CMakeFiles/testCoordGen.dir/test.cpp.o.d -o CMakeFiles/testCoordGen.dir/test.cpp.o -c /build/reproducible-path/rdkit-202409.2/External/CoordGen/test.cpp
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
+make  -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 47%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/UFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -MF CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o.d -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/UFF/testUFFForceField.cpp
 [ 48%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/UFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -MF CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o.d -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/ForceField/UFF/testUFFForceField.cpp
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o -MF CMakeFiles/graphmolTest1.dir/test1.cpp.o.d -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/test1.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
@@ -7393,6 +7421,12 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'unsigned int RDKit::CoordGen::addCoords(T&, const CoordGenParams*) [with T = RDKit::RWMol]' at /build/reproducible-path/rdkit-202409.2/External/CoordGen/CoordGen.h:178:21:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -7402,12 +7436,19 @@
 /usr/include/c++/14/bits/vector.tcc:181:5: note: parameter passing for argument of type 'std::vector<RDKit::Dict::Pair>::iterator' changed in GCC 7.1
   181 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'unsigned int RDKit::CoordGen::addCoords(T&, const CoordGenParams*) [with T = RDKit::RWMol]' at /build/reproducible-path/rdkit-202409.2/External/CoordGen/CoordGen.h:178:21:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 48%] Linking CXX executable testUFFForceField
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testUFFForceField.dir/link.d CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField  ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 48%] Built target testUFFForceField
+make  -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 48%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -MF CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o.d -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/molopstest.cpp
 /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
@@ -7420,30 +7461,17 @@
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 [ 48%] Linking CXX executable testCoordGen
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/External/CoordGen && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCoordGen.dir/link.txt --verbose=1
-[ 48%] Linking CXX executable testUFFForceField
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testUFFForceField.dir/link.d CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField  ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testCoordGen.dir/link.d CMakeFiles/testCoordGen.dir/test.cpp.o -o testCoordGen  /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 48%] Built target testUFFForceField
+[ 48%] Built target testCoordGen
 make  -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake "--color="
-[ 48%] Built target testCoordGen
-make  -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 48%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -MF CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o.d -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/testChirality.cpp
-[ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -MF CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o.d -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/testPickler.cpp
 In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = RDKit::Dict::Pair; _Alloc = std::allocator<RDKit::Dict::Pair>]',
     inlined from 'void RDKit::Dict::clearVal(const std::string&)' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:320:20,
     inlined from 'void RDKit::RDProps::clearComputedProps() const' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDProps.h:154:25:
@@ -7456,11 +7484,24 @@
 /usr/include/c++/14/bits/stl_vector.h:1537:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
  1537 |       { return _M_erase(begin() + (__position - cbegin())); }
       |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 49%] Linking CXX executable graphmolTest1
+[ 48%] Linking CXX executable graphmolTest1
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmolTest1.dir/link.d CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../lib/libRDKitForceField.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target graphmolTest1
+[ 48%] Built target graphmolTest1
+make  -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake "--color="
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -MF CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o.d -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/testPickler.cpp
+[ 49%] Linking CXX executable testMMFFForceField
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMMFFForceField.dir/link.d CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField  ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 49%] Built target testMMFFForceField
 make  -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake "--color="
@@ -7469,8 +7510,6 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -MF CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o.d -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/testPicklerGlobalSettings.cpp
-[ 49%] Linking CXX executable testMMFFForceField
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -7481,9 +7520,11 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMMFFForceField.dir/link.d CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField  ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 49%] Linking CXX executable graphmoltestPicklerGlobalSetting
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.d CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target testMMFFForceField
+[ 49%] Built target graphmoltestPicklerGlobalSetting
 make  -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake "--color="
@@ -7513,11 +7554,11 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 49%] Linking CXX executable graphmoltestPicklerGlobalSetting
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.d CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 49%] Linking CXX executable graphmoltestChirality
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmoltestChirality.dir/link.d CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target graphmoltestPicklerGlobalSetting
+[ 49%] Built target graphmoltestChirality
 make  -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake "--color="
@@ -7552,11 +7593,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Building CXX object Code/GraphMol/CMakeFiles/testSGroup.dir/testSGroup.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/testSGroup.dir/testSGroup.cpp.o -MF CMakeFiles/testSGroup.dir/testSGroup.cpp.o.d -o CMakeFiles/testSGroup.dir/testSGroup.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/testSGroup.cpp
-[ 49%] Linking CXX executable graphmoltestChirality
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmoltestChirality.dir/link.d CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 49%] Linking CXX executable resMolSupplierTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/resMolSupplierTest.dir/link.d CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target graphmoltestChirality
+[ 49%] Built target resMolSupplierTest
 make  -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake "--color="
@@ -7565,11 +7606,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -MF CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o.d -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/test-valgrind.cpp
-[ 49%] Linking CXX executable resMolSupplierTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/resMolSupplierTest.dir/link.d CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 49%] Linking CXX executable molBundleTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molBundleTest.dir/link.d CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target resMolSupplierTest
+[ 49%] Built target molBundleTest
 make  -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake "--color="
@@ -7578,11 +7619,18 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o -MF CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o.d -o CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_graphmol.cpp
-[ 49%] Linking CXX executable molBundleTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molBundleTest.dir/link.d CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
+    inlined from 'void testAddHsCoords()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/molopstest.cpp:2052:19:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 49%] Linking CXX executable test-valgrind
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/test-valgrind.dir/link.d "CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o" -o test-valgrind  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target molBundleTest
+[ 49%] Built target test-valgrind
 make  -f Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/DependInfo.cmake "--color="
@@ -7591,11 +7639,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -MF CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o.d -o CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_organometallics.cpp
-[ 49%] Linking CXX executable test-valgrind
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/test-valgrind.dir/link.d "CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o" -o test-valgrind  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 49%] Linking CXX executable graphmolOrganometallicsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolOrganometallicsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmolOrganometallicsCatch.dir/link.d CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -o graphmolOrganometallicsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target test-valgrind
+[ 49%] Built target graphmolOrganometallicsCatch
 make  -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/DependInfo.cmake "--color="
@@ -7604,18 +7652,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -MF CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o.d -o CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_sgroups.cpp
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
-    inlined from 'void testAddHsCoords()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/molopstest.cpp:2052:19:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 49%] Linking CXX executable graphmolOrganometallicsCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolOrganometallicsCatch.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmolOrganometallicsCatch.dir/link.d CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -o graphmolOrganometallicsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 49%] Linking CXX executable testSGroup
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSGroup.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testSGroup.dir/link.d CMakeFiles/testSGroup.dir/testSGroup.cpp.o -o testSGroup  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target graphmolOrganometallicsCatch
+[ 49%] Built target testSGroup
 make  -f Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/DependInfo.cmake "--color="
@@ -7624,11 +7665,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -MF CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o.d -o CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_adjustquery.cpp
-[ 49%] Linking CXX executable graphmolSGroupCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolSGroupCatch.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmolSGroupCatch.dir/link.d CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -o graphmolSGroupCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 49%] Linking CXX executable graphmolMolOpsTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmolMolOpsTest.dir/link.d CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target graphmolSGroupCatch
+[ 49%] Built target graphmolMolOpsTest
 make  -f Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/DependInfo.cmake "--color="
@@ -7637,11 +7678,21 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Building CXX object Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o -MF CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o.d -o CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_chirality.cpp
-[ 49%] Linking CXX executable testSGroup
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSGroup.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testSGroup.dir/link.d CMakeFiles/testSGroup.dir/testSGroup.cpp.o -o testSGroup  ../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+In file included from /usr/include/c++/14/vector:72,
+                 from /usr/include/catch2/interfaces/catch_interfaces_config.hpp:17,
+                 from /usr/include/catch2/benchmark/catch_benchmark.hpp:20,
+                 from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24,
+                 from /usr/include/catch2/catch_all.hpp:25,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_graphmol.cpp:11:
+/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
+/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
+  700 |     vector<_Tp, _Alloc>::
+      |     ^~~~~~~~~~~~~~~~~~~
+[ 49%] Linking CXX executable graphmolSGroupCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolSGroupCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/graphmolSGroupCatch.dir/link.d CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -o graphmolSGroupCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target testSGroup
+[ 49%] Built target graphmolSGroupCatch
 make  -f Code/GraphMol/CMakeFiles/canonTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/canonTestsCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/canonTestsCatch.dir/DependInfo.cmake "--color="
@@ -7663,29 +7714,6 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Building CXX object Code/GraphMol/CMakeFiles/pickleTestsCatch.dir/catch_pickles.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/pickleTestsCatch.dir/catch_pickles.cpp.o -MF CMakeFiles/pickleTestsCatch.dir/catch_pickles.cpp.o.d -o CMakeFiles/pickleTestsCatch.dir/catch_pickles.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_pickles.cpp
-In file included from /usr/include/c++/14/vector:72,
-                 from /usr/include/catch2/interfaces/catch_interfaces_config.hpp:17,
-                 from /usr/include/catch2/benchmark/catch_benchmark.hpp:20,
-                 from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24,
-                 from /usr/include/catch2/catch_all.hpp:25,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/catch_graphmol.cpp:11:
-/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
-/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
-  700 |     vector<_Tp, _Alloc>::
-      |     ^~~~~~~~~~~~~~~~~~~
-[ 49%] Linking CXX executable canonTestsCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/canonTestsCatch.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/canonTestsCatch.dir/link.d CMakeFiles/canonTestsCatch.dir/catch_canon.cpp.o -o canonTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Built target canonTestsCatch
-make  -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 49%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o -MF CMakeFiles/smiTest1.dir/test.cpp.o.d -o CMakeFiles/smiTest1.dir/test.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/test.cpp
 In file included from /usr/include/c++/14/vector:65:
 /usr/include/c++/14/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*]':
 /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
@@ -7705,6 +7733,19 @@
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/pickleTestsCatch.dir/link.d CMakeFiles/pickleTestsCatch.dir/catch_pickles.cpp.o -o pickleTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Built target pickleTestsCatch
+make  -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 49%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o -MF CMakeFiles/smiTest1.dir/test.cpp.o.d -o CMakeFiles/smiTest1.dir/test.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/test.cpp
+[ 49%] Linking CXX executable canonTestsCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/canonTestsCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/canonTestsCatch.dir/link.d CMakeFiles/canonTestsCatch.dir/catch_canon.cpp.o -o canonTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 49%] Built target canonTestsCatch
 make  -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake "--color="
@@ -7713,108 +7754,55 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 49%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o -MF CMakeFiles/ChemReactions.dir/Reaction.cpp.o.d -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Reaction.cpp
-[ 49%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -MF CMakeFiles/ChemReactions.dir/MDLParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/MDLParser.cpp
-[ 49%] Linking CXX executable graphmolMolOpsTest
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/ReactionRunner.cpp
-[ 50%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -MF CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o.d -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/PreprocessRxn.cpp
+[ 49%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -MF CMakeFiles/ChemReactions.dir/MDLParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/MDLParser.cpp
+[ 49%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -MF CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/DaylightParser.cpp
+[ 49%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/ReactionPickler.cpp
+[ 49%] Linking CXX executable chiralityTestsCatch
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+[ 49%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o
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+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/chiralityTestsCatch.dir/link.d CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o -o chiralityTestsCatch  ../RDGeneral/librdkitCatch.a ../../lib/libRDKitCIPLabeler.so.1.2024.09.2 ../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../lib/libRDKitAlignment.so.1.2024.09.2 ../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 49%] Built target chiralityTestsCatch
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-[ 51%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/nontetrahedralCatch.dir/nontetrahedral_tests.cpp.o
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-[ 51%] Linking CXX executable smiTest1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -MF CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o.d -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
-In file included from /usr/include/c++/14/vector:72,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:21,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Reaction.h:39,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/ReactionRunner.cpp:35:
-/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
-/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
-  700 |     vector<_Tp, _Alloc>::
-      |     ^~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/vector:66:
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'void RDKit::ReactionRunnerUtils::generateProductConformers(RDKit::Conformer*, const RDKit::ROMol&, ReactantProductAtomMapping*)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/ReactionRunner.cpp:1317:30:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 50%] Built target smiTest1
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-[ 51%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
+[ 50%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
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-[ 51%] Linking CXX executable chiralityTestsCatch
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-[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o
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-[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o
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+[ 50%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/ReactionDepict.cpp
 In file included from /usr/include/c++/14/set:62,
                  from /build/reproducible-path/rdkit-202409.2/Code/Query/SetQuery.h:13,
                  from /build/reproducible-path/rdkit-202409.2/Code/Query/QueryObjects.h:29,
@@ -7825,8 +7813,8 @@
 /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator' changed in GCC 7.1
  2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
+[ 50%] Linking CXX executable nontetrahedralCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/nontetrahedralCatch.dir/link.txt --verbose=1
 In file included from /usr/include/c++/14/map:63,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
@@ -8029,6 +8017,17 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/nontetrahedralCatch.dir/link.d CMakeFiles/nontetrahedralCatch.dir/nontetrahedral_tests.cpp.o -o nontetrahedralCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 50%] Built target nontetrahedralCatch
+make  -f Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/build.make Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/build.make Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 50%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DIN_COORDGEN -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/catch_tests.cpp.o -MF CMakeFiles/depictorCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/depictorCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/catch_tests.cpp
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point2D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point2D> >]',
     inlined from 'void testIssue2091304()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/testDepictor.cpp:459:11:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator' changed in GCC 7.1
@@ -8209,178 +8208,98 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
+[ 50%] Linking CXX executable smiTestCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTestCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/smiTestCatch.dir/link.d CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -o smiTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 50%] Built target smiTestCatch
 make  -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 make  -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
+[ 50%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o -MF CMakeFiles/fileParsersTest1.dir/test1.cpp.o.d -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/test1.cpp
+[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
 [ 51%] Linking CXX executable testDepictor
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testDepictor.dir/link.d CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
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 [ 51%] Built target testDepictor
-[ 52%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
 make  -f Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/DependInfo.cmake "--color="
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o
+[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o -MF CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o.d -o CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testAtropisomers.cpp
-[ 52%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ChemReactions.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2024.09.2 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o  ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
+[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/ReactionUtils.cpp
+[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -MF CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/MoleculeParser.cpp
+[ 51%] Linking CXX executable testAtropisomers
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAtropisomers.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testAtropisomers.dir/link.d CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o -o testAtropisomers  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Built target ChemReactions
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-[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSquiggleDoubleBonds.dir/testSquiggleDoubleBonds.cpp.o
+[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSquiggleDoubleBonds.dir/testSquiggleDoubleBonds.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testSquiggleDoubleBonds.dir/testSquiggleDoubleBonds.cpp.o -MF CMakeFiles/testSquiggleDoubleBonds.dir/testSquiggleDoubleBonds.cpp.o.d -o CMakeFiles/testSquiggleDoubleBonds.dir/testSquiggleDoubleBonds.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testSquiggleDoubleBonds.cpp
-[ 52%] Linking CXX executable testSquiggleDoubleBonds
+[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/ReactionRunner.cpp
+[ 51%] Linking CXX executable testSquiggleDoubleBonds
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Built target testSquiggleDoubleBonds
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -MF CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o.d -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolSupplier.cpp
-[ 52%] Linking CXX executable testAtropisomers
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAtropisomers.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testAtropisomers.dir/link.d CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o -o testAtropisomers  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/DependInfo.cmake "--color="
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-[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -MF CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o.d -o CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testGeneralFileReader.cpp
-[ 52%] Linking CXX executable testGeneralFileReader
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGeneralFileReader.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testGeneralFileReader.dir/link.d CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -o testGeneralFileReader  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitRDStreams.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Built target testGeneralFileReader
-make  -f Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -MF CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o.d -o CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMultithreadedMolSupplier.cpp
-[ 52%] Linking CXX executable testMultithreadedMolSupplier
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultithreadedMolSupplier.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMultithreadedMolSupplier.dir/link.d CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -o testMultithreadedMolSupplier  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitRDStreams.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Built target testMultithreadedMolSupplier
-make  -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake "--color="
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -MF CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o.d -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolWriter.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/test1.cpp:11:
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:21,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Reaction.h:39,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/ReactionRunner.cpp:35:
 /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25:
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'void RDKit::ReactionRunnerUtils::generateProductConformers(RDKit::Conformer*, const RDKit::ROMol&, ReactantProductAtomMapping*)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/ReactionRunner.cpp:1317:30:
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 52%] Linking CXX executable smiTestCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTestCatch.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/smiTestCatch.dir/link.d CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -o smiTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake "--color="
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o -MF CMakeFiles/testTplParser.dir/testTpls.cpp.o.d -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testTpls.cpp
-[ 52%] Linking CXX executable testMolSupplier
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMolSupplier.dir/link.d CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitRDStreams.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Built target testMolSupplier
-make  -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake "--color="
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-[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -MF CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o.d -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMol2ToMol.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:21,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolWriter.cpp:11:
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/test1.cpp:11:
 /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-[ 52%] Linking CXX executable testTplParser
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testTplParser.dir/link.d CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Built target testTplParser
-make  -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake "--color="
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-[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o -MF CMakeFiles/testSequence.dir/testSequence.cpp.o.d -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testSequence.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
-    inlined from 'void testIssue265()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolWriter.cpp:677:21:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
-    inlined from 'void testIssue265()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolWriter.cpp:678:21:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
-    inlined from 'void testIssue265()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolWriter.cpp:679:21:
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25:
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -MF CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o.d -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/PreprocessRxn.cpp
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
     inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
@@ -8437,76 +8356,197 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 52%] Linking CXX executable testMol2ToMol
+[ 51%] Linking CXX executable depictorCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/depictorCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/depictorCatch.dir/link.d CMakeFiles/depictorCatch.dir/catch_tests.cpp.o -o depictorCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Built target depictorCatch
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -MF CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o.d -o CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testGeneralFileReader.cpp
+[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -MF CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o.d -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
+[ 51%] Linking CXX executable testGeneralFileReader
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGeneralFileReader.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testGeneralFileReader.dir/link.d CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -o testGeneralFileReader  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitRDStreams.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Built target testGeneralFileReader
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -MF CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o.d -o CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMultithreadedMolSupplier.cpp
+[ 51%] Linking CXX executable testMolSupplier
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMolSupplier.dir/link.d CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitRDStreams.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Built target testMolSupplier
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -MF CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o.d -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolWriter.cpp
+[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o -MF CMakeFiles/ChemReactions.dir/PNGParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/PNGParser.cpp
+[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o -MF CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/CDXMLParser.cpp
+[ 51%] Linking CXX executable fileParsersTest1
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/fileParsersTest1.dir/link.d CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Built target fileParsersTest1
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o -MF CMakeFiles/testTplParser.dir/testTpls.cpp.o.d -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testTpls.cpp
+[ 51%] Linking CXX executable testMultithreadedMolSupplier
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultithreadedMolSupplier.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMultithreadedMolSupplier.dir/link.d CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -o testMultithreadedMolSupplier  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitRDStreams.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Built target testMultithreadedMolSupplier
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -MF CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o.d -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMol2ToMol.cpp
+In file included from /usr/include/c++/14/vector:72,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:21,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolWriter.cpp:11:
+/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
+/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
+  700 |     vector<_Tp, _Alloc>::
+      |     ^~~~~~~~~~~~~~~~~~~
+[ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC  -fpermissive  -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp
+[ 51%] Linking CXX executable testMol2ToMol
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMol2ToMol.dir/link.d CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Built target testMol2ToMol
+[ 51%] Built target testMol2ToMol
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o -MF CMakeFiles/testSequence.dir/testSequence.cpp.o.d -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testSequence.cpp
+[ 51%] Linking CXX executable testTplParser
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testTplParser.dir/link.d CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 51%] Built target testTplParser
 make  -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o
+[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -MF CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o.d -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp
-[ 53%] Linking CXX executable testMolWriter
+In file included from /usr/include/c++/14/vector:66:
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
+    inlined from 'void testIssue265()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolWriter.cpp:677:21:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
+    inlined from 'void testIssue265()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolWriter.cpp:678:21:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
+    inlined from 'void testIssue265()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/testMolWriter.cpp:679:21:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 52%] Linking CXX executable testMolWriter
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMolWriter.dir/link.d CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 53%] Built target testMolWriter
+[ 52%] Built target testMolWriter
 make  -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o
+[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o -MF CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o.d -o CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/file_parsers_catch.cpp
-[ 53%] Linking CXX executable testSequence
+[ 52%] Linking CXX executable testSequence
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+[ 52%] Built target testSequence
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-[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o
+[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o
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-[ 53%] Linking CXX executable depictorCatch
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-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/depictorCatch.dir/link.d CMakeFiles/depictorCatch.dir/catch_tests.cpp.o -o depictorCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 52%] Linking CXX executable testExtendedStereoParsing
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testExtendedStereoParsing.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testExtendedStereoParsing.dir/link.d CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -o testExtendedStereoParsing  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 53%] Built target depictorCatch
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-[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o
+[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o -MF CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o.d -o CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/XYZFileParserCatchTest.cpp
-[ 53%] Linking CXX executable testExtendedStereoParsing
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+[ 52%] Linking CXX executable XYZFileParserCatchTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/XYZFileParserCatchTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/XYZFileParserCatchTest.dir/link.d CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o -o XYZFileParserCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 53%] Built target testExtendedStereoParsing
+[ 52%] Built target XYZFileParserCatchTest
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-[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o
+[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o -MF CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o.d -o CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/cdxml_parser_catch.cpp
-[ 53%] Linking CXX executable XYZFileParserCatchTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/XYZFileParserCatchTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/XYZFileParserCatchTest.dir/link.d CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o -o XYZFileParserCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 52%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
+[ 53%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
+[ 53%] Linking CXX executable testPropertyLists
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPropertyLists.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testPropertyLists.dir/link.d CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -o testPropertyLists  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 53%] Built target XYZFileParserCatchTest
+[ 53%] Built target testPropertyLists
 make  -f Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/DependInfo.cmake "--color="
@@ -8517,25 +8557,42 @@
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o -MF CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o.d -o CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/molfile_stereo_catch.cpp
 [ 53%] Linking CXX executable cdxmlParserCatchTest
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlParserCatchTest.dir/link.txt --verbose=1
-[ 53%] Linking CXX executable testPropertyLists
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPropertyLists.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/cdxmlParserCatchTest.dir/link.d CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o -o cdxmlParserCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 53%] Built target cdxmlParserCatchTest
 make  -f Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/DependInfo.cmake "--color="
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testPropertyLists.dir/link.d CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -o testPropertyLists  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 53%] Built target testPropertyLists
-make  -f Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/depend
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 make  -f Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/DependInfo.cmake "--color="
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/connectTheDots_catch.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/connectTheDots_catch.cpp.o -MF CMakeFiles/connectTheDotsTest.dir/connectTheDots_catch.cpp.o.d -o CMakeFiles/connectTheDotsTest.dir/connectTheDots_catch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/connectTheDots_catch.cpp
+In file included from /usr/include/c++/14/vector:72,
+                 from /usr/include/catch2/interfaces/catch_interfaces_config.hpp:17,
+                 from /usr/include/catch2/benchmark/catch_benchmark.hpp:20,
+                 from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24,
+                 from /usr/include/catch2/catch_all.hpp:25,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/file_parsers_catch.cpp:17:
+/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
+/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
+  700 |     vector<_Tp, _Alloc>::
+      |     ^~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/14/vector:66:
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 53%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ChemReactions.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2024.09.2 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o  ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 53%] Built target ChemReactions
+make  -f Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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@@ -8567,11 +8624,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o -MF CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o.d -o CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/multithreaded_supplier_catch.cpp
-[ 53%] Linking CXX executable v2MolSuppliers
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/v2MolSuppliers.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/v2MolSuppliers.dir/link.d CMakeFiles/v2MolSuppliers.dir/v2_suppliers_catch.cpp.o -o v2MolSuppliers  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 53%] Linking CXX executable v2FileParsersCatchTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/v2FileParsersCatchTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/v2FileParsersCatchTest.dir/link.d CMakeFiles/v2FileParsersCatchTest.dir/v2_file_parsers_catch.cpp.o -o v2FileParsersCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 53%] Built target v2MolSuppliers
+[ 53%] Built target v2FileParsersCatchTest
 make  -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake "--color="
@@ -8580,27 +8637,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 54%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o -MF CMakeFiles/testSubstructMatch.dir/test1.cpp.o.d -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct/test1.cpp
-In file included from /usr/include/c++/14/vector:72,
-                 from /usr/include/catch2/interfaces/catch_interfaces_config.hpp:17,
-                 from /usr/include/catch2/benchmark/catch_benchmark.hpp:20,
-                 from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24,
-                 from /usr/include/catch2/catch_all.hpp:25,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers/file_parsers_catch.cpp:17:
-/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
-/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
-  700 |     vector<_Tp, _Alloc>::
-      |     ^~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/vector:66:
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 54%] Linking CXX executable v2FileParsersCatchTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/v2FileParsersCatchTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/v2FileParsersCatchTest.dir/link.d CMakeFiles/v2FileParsersCatchTest.dir/v2_file_parsers_catch.cpp.o -o v2FileParsersCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 54%] Linking CXX executable v2MolSuppliers
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/v2MolSuppliers.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/v2MolSuppliers.dir/link.d CMakeFiles/v2MolSuppliers.dir/v2_suppliers_catch.cpp.o -o v2MolSuppliers  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Built target v2FileParsersCatchTest
+[ 54%] Built target v2MolSuppliers
 make  -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/DependInfo.cmake "--color="
@@ -8609,6 +8650,19 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 54%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct/catch_tests.cpp
+[ 54%] Linking CXX executable multithreadedSupplierCatchTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/multithreadedSupplierCatchTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/multithreadedSupplierCatchTest.dir/link.d CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o -o multithreadedSupplierCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 54%] Built target multithreadedSupplierCatchTest
+make  -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o -MF CMakeFiles/testReaction.dir/testReaction.cpp.o.d -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/testReaction.cpp
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct/test1.cpp: In function 'void testMostSubstitutedCoreMatch()':
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct/test1.cpp:1903:41: warning: possibly dangling reference to a temporary [-Wdangling-reference]
  1903 |         std::make_pair(phenyl.get(), 3u)}) {
@@ -8640,45 +8694,58 @@
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct/test1.cpp:1903:23: note: the temporary was destroyed at the end of the full expression 'std::make_pair<RDKit::RWMol*, unsigned int>(phenyl.std::unique_ptr<RDKit::RWMol>::get(), 3)'
  1903 |         std::make_pair(phenyl.get(), 3u)}) {
       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
-[ 54%] Linking CXX executable multithreadedSupplierCatchTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/multithreadedSupplierCatchTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/multithreadedSupplierCatchTest.dir/link.d CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o -o multithreadedSupplierCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 54%] Linking CXX executable fileParsersCatchTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/fileParsersCatchTest.dir/link.d CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o -o fileParsersCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Built target multithreadedSupplierCatchTest
-make  -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
+[ 54%] Built target fileParsersCatchTest
+make  -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
+make  -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o -MF CMakeFiles/testReaction.dir/testReaction.cpp.o.d -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/testReaction.cpp
+[ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -MF CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o.d -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
 [ 54%] Linking CXX executable substructTestCatch
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructTestCatch.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/substructTestCatch.dir/link.d CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o -o substructTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 54%] Built target substructTestCatch
-make  -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
+make  -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake "--color="
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+make  -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -MF CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o.d -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
+[ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -MF CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o.d -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
 [ 54%] Linking CXX executable testSubstructMatch
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 54%] Built target testSubstructMatch
-make  -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
+make  -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
+make  -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -MF CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o.d -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
+[ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/catch_tests.cpp
+[ 54%] Linking CXX executable testReactionFingerprints
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testReactionFingerprints.dir/link.d CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 54%] Built target testReactionFingerprints
+make  -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemTransforms /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 54%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -MF CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o.d -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/testReaction.cpp:33:
@@ -8692,37 +8759,11 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 54%] Linking CXX executable testReactionFingerprints
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testReactionFingerprints.dir/link.d CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-make  -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake "--color="
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/catch_tests.cpp
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -MF CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o.d -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
-[ 54%] Linking CXX executable fileParsersTest1
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/fileParsersTest1.dir/link.d CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Built target fileParsersTest1
 make  -f Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemTransforms /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/DependInfo.cmake "--color="
@@ -8731,19 +8772,6 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 54%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemTransforms/catch_tests.cpp
-[ 54%] Linking CXX executable fileParsersCatchTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/fileParsersCatchTest.dir/link.d CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o -o fileParsersCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Built target fileParsersCatchTest
-make  -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Pipeline.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Pipeline.cpp.o -MF CMakeFiles/MolStandardize.dir/Pipeline.cpp.o.d -o CMakeFiles/MolStandardize.dir/Pipeline.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Pipeline.cpp
 In file included from /usr/include/c++/14/vector:65,
                  from /usr/include/catch2/interfaces/catch_interfaces_config.hpp:17,
                  from /usr/include/catch2/benchmark/catch_benchmark.hpp:20,
@@ -8766,13 +8794,6 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 54%] Linking CXX executable testChemTransforms
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testChemTransforms.dir/link.d CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Built target testChemTransforms
-[ 54%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -MF CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o.d -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/MolStandardize.cpp
 In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*; bool _TrivialValueTypes = false]',
     inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
     inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*; _Tp = RDKit::Dict::Pair]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
@@ -8781,6 +8802,32 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 54%] Linking CXX executable testChemTransforms
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testChemTransforms.dir/link.d CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 54%] Built target testChemTransforms
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 54%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Pipeline.cpp.o
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+[ 54%] Linking CXX executable chemTransformsTestCatch
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 54%] Built target chemTransformsTestCatch
+make  -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 54%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -MF CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o.d -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
 In file included from /usr/include/c++/14/regex:59,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Pipeline.cpp:12:
 /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
@@ -8794,38 +8841,82 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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-[ 54%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o -MF CMakeFiles/MolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Metal.cpp
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/chemTransformsTestCatch.dir/link.d CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o -o chemTransformsTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 54%] Linking CXX executable rxnTestCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnTestCatch.dir/link.txt --verbose=1
+[ 54%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -MF CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o.d -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/MolStandardize.cpp
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+[ 54%] Built target rxnTestCatch
+make  -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -MF CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o.d -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
-[ 54%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o -MF CMakeFiles/MolStandardize.dir/Normalize.cpp.o.d -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Normalize.cpp
-[ 54%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o -MF CMakeFiles/MolStandardize.dir/Validate.cpp.o.d -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Validate.cpp
+[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o -MF CMakeFiles/testFragCatalog.dir/test1.cpp.o.d -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/test1.cpp
 [ 54%] Linking CXX executable filterCatalogTest
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/filterCatalogTest.dir/link.d CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest  ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 54%] Built target filterCatalogTest
-make  -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
+make  -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake "--color="
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+make  -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o -MF CMakeFiles/testFragCatalog.dir/test1.cpp.o.d -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/test1.cpp
+[ 54%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -MF CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
+[ 54%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
+[ 54%] Linking CXX executable testFragCatalog
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testFragCatalog.dir/link.d CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog  ../../../lib/libRDKitFragCatalog.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 54%] Built target testFragCatalog
+make  -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 54%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o -MF CMakeFiles/Descriptors.dir/Crippen.cpp.o.d -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/Crippen.cpp
+[ 54%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o
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+[ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o
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+[ 55%] Linking CXX executable testReaction
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+[ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
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+[ 55%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o
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+[ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o -MF CMakeFiles/MolStandardize.dir/Normalize.cpp.o.d -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Normalize.cpp
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/BCUT.cpp: In function 'std::pair<double, double> RDKit::Descriptors::{anonymous}::BCUT2D(std::unique_ptr<Eigen::Matrix<double, -1, -1> >&, const std::vector<double>&)':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/BCUT.cpp:70:71: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+   70 |                                  const std::vector<double> &atom_props) {
+      |                                                                       ^
+[ 55%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
+[ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o
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+[ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/MolDescriptors.cpp
+[ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o -MF CMakeFiles/Descriptors.dir/MolSurf.cpp.o.d -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/MolSurf.cpp
 In file included from /usr/include/c++/14/bits/stl_algo.h:61,
                  from /usr/include/c++/14/algorithm:61,
                  from /usr/include/boost/iterator/iterator_concepts.hpp:26,
@@ -8854,8 +8945,6 @@
 /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::MolStandardize::{anonymous}::BondInfo*, std::vector<RDKit::MolStandardize::{anonymous}::BondInfo> >' changed in GCC 7.1
  1750 |     __unguarded_linear_insert(_RandomAccessIterator __last,
       |     ^~~~~~~~~~~~~~~~~~~~~~~~~
-[ 54%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o -MF CMakeFiles/MolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Charge.cpp
 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::MolStandardize::{anonymous}::BondInfo*, vector<RDKit::MolStandardize::{anonymous}::BondInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::MolStandardize::{anonymous}::NeighborsInfo::NeighborsInfo(const RDKit::ROMol&, const RDKit::Atom*)::<lambda(const RDKit::MolStandardize::{anonymous}::BondInfo&, const RDKit::MolStandardize::{anonymous}::BondInfo&)> >]':
 /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::MolStandardize::{anonymous}::BondInfo*, std::vector<RDKit::MolStandardize::{anonymous}::BondInfo> >' changed in GCC 7.1
  1770 |     __insertion_sort(_RandomAccessIterator __first,
@@ -8874,6 +8963,8 @@
  1770 |     __insertion_sort(_RandomAccessIterator __first,
       |     ^~~~~~~~~~~~~~~~
 /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+[ 55%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp
 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::MolStandardize::{anonymous}::BondInfo*, vector<RDKit::MolStandardize::{anonymous}::BondInfo> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::MolStandardize::{anonymous}::NeighborsInfo::NeighborsInfo(const RDKit::ROMol&, const RDKit::Atom*)::<lambda(const RDKit::MolStandardize::{anonymous}::BondInfo&, const RDKit::MolStandardize::{anonymous}::BondInfo&)> >]':
 /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::MolStandardize::{anonymous}::BondInfo*, std::vector<RDKit::MolStandardize::{anonymous}::BondInfo> >' changed in GCC 7.1
  1876 |     __introsort_loop(_RandomAccessIterator __first,
@@ -8924,249 +9015,55 @@
 /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::MolStandardize::{anonymous}::BondInfo*, std::vector<RDKit::MolStandardize::{anonymous}::BondInfo> >' changed in GCC 7.1
  1822 |         std::__insertion_sort(__first, __last, __comp);
       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-[ 54%] Linking CXX executable testFragCatalog
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testFragCatalog.dir/link.d CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog  ../../../lib/libRDKitFragCatalog.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -MF CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
-[ 54%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/MolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Tautomer.cpp
-[ 54%] Linking CXX executable rxnTestCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnTestCatch.dir/link.txt --verbose=1
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-[ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp
-[ 55%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
-[ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp
-[ 56%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o -MF CMakeFiles/Descriptors.dir/BCUT.cpp.o.d -o CMakeFiles/Descriptors.dir/BCUT.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/BCUT.cpp
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/BCUT.cpp: In function 'std::pair<double, double> RDKit::Descriptors::{anonymous}::BCUT2D(std::unique_ptr<Eigen::Matrix<double, -1, -1> >&, const std::vector<double>&)':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/BCUT.cpp:70:71: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
-   70 |                                  const std::vector<double> &atom_props) {
-      |                                                                       ^
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-[ 56%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/MolDescriptors.cpp
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-[ 57%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o
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-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/DCLV.cpp: In member function 'void RDKit::Descriptors::State::generateElemPoints(RDKit::Descriptors::ElemStruct*, double, double, int)':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/DCLV.cpp:298:35: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare]
-  298 |       for (unsigned int j = 0; (i < count) && (j < vert); j++) {
-      |                                 ~~^~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/DCLV.cpp:307:37: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare]
-  307 |         for (unsigned int k = 0; (i < count) && (k < horz); k++) {
-      |                                   ~~^~~~~~~
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-[ 58%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o
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-[ 58%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o
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-[ 59%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -MF CMakeFiles/Descriptors.dir/GETAWAY.cpp.o.d -o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp
-[ 59%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o
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-[ 59%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -MF CMakeFiles/Descriptors.dir/CoulombMat.cpp.o.d -o CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/CoulombMat.cpp
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o -MF CMakeFiles/MolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Charge.cpp
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+[ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o -MF CMakeFiles/Descriptors.dir/Lipinski.cpp.o.d -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/Lipinski.cpp
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-[ 59%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o
+[ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -MF CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o.d -o CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/testMHFPFingerprint.cpp
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp: In function 'Eigen::MatrixXd RDKit::Descriptors::{anonymous}::GetPinv(const Eigen::MatrixXd&)':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp:280:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
-  280 |   for (unsigned int i = 0; i < A.cols(); ++i) {
-      |                            ~~^~~~~~~~~~
+[ 55%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdfragcatalog.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o  ../../../../lib/libRDKitFragCatalog.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 55%] Built target rdfragcatalog
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake "--color="
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-[ 59%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o
+[ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -MF CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o.d -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp
+[ 55%] Linking CXX executable testMHFPFingerprint
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMHFPFingerprint.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMHFPFingerprint.dir/link.d CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -o testMHFPFingerprint  ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-[ 59%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o
+[ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/catch_tests.cpp
-[ 59%] Linking CXX executable testMHFPFingerprint
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMHFPFingerprint.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMHFPFingerprint.dir/link.d CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -o testMHFPFingerprint  ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
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-[ 60%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -MF CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o.d -o CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/fpgen_catch_tests.cpp
-In file included from /usr/include/c++/14/bits/stl_algo.h:61,
-                 from /usr/include/c++/14/algorithm:61,
-                 from /usr/include/boost/iterator/iterator_concepts.hpp:26,
-                 from /usr/include/boost/range/concepts.hpp:20,
-                 from /usr/include/boost/range/size_type.hpp:20,
-                 from /usr/include/boost/range/size.hpp:21,
-                 from /usr/include/boost/range/functions.hpp:20,
-                 from /usr/include/boost/range/iterator_range_core.hpp:38,
-                 from /usr/include/boost/range/iterator_range.hpp:13,
-                 from /usr/include/boost/iostreams/traits.hpp:38,
-                 from /usr/include/boost/iostreams/detail/call_traits.hpp:15,
-                 from /usr/include/boost/iostreams/detail/adapter/device_adapter.hpp:22,
-                 from /usr/include/boost/iostreams/tee.hpp:18,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:17,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:21,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp:35:
-/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]':
-/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
-      |     ^~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]':
-/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1770 |     __insertion_sort(_RandomAccessIterator __first,
-      |     ^~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]':
-/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1876 |     __introsort_loop(_RandomAccessIterator __first,
-      |     ^~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1890 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
-      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]',
-    inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = greater<double>]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
-    inlined from 'std::vector<double> RDKit::Descriptors::{anonymous}::clusterArray2(std::vector<double>, unsigned int)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp:221:12:
-/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1905 |           std::__introsort_loop(__first, __last,
-      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
- 1906 |                                 std::__lg(__last - __first) * 2,
-      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1907 |                                 __comp);
-      |                                 ~~~~~~~
-In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]',
-    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
-    inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = greater<double>]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
-    inlined from 'std::vector<double> RDKit::Descriptors::{anonymous}::clusterArray2(std::vector<double>, unsigned int)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp:221:12:
-/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1817 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
-      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1822 |         std::__insertion_sort(__first, __last, __comp);
-      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+[ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp
+[ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/MolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Tautomer.cpp
+[ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o -MF CMakeFiles/Descriptors.dir/MQN.cpp.o.d -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/MQN.cpp
 In file included from /usr/include/c++/14/map:62,
                  from /usr/include/catch2/internal/catch_reporter_spec_parser.hpp:15,
                  from /usr/include/catch2/catch_config.hpp:17,
@@ -9283,6 +9180,8 @@
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/catch_tests.cpp:666:1: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
   666 | }
       | ^
+[ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o -MF CMakeFiles/Descriptors.dir/Property.cpp.o.d -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/Property.cpp
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/catch_tests.cpp: In function 'void CATCH2_INTERNAL_TEST_23()':
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/catch_tests.cpp:402:1: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
   402 | }
@@ -9351,6 +9250,40 @@
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/catch_tests.cpp:262:1: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
   262 | }
       | ^
+In file included from /usr/include/c++/14/set:62,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Query/SetQuery.h:13,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Query/QueryObjects.h:29,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:24,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:23,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:13:
+/usr/include/c++/14/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, int> >]':
+/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, int>, std::_Select1st<std::pair<const long long unsigned int, int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, int> > >::const_iterator' changed in GCC 7.1
+ 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/14/map:63,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:25:
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, int> >]',
+    inlined from 'void RDKit::SparseIntVect<IndexType>::setVal(IndexType, int) [with IndexType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/DataStructs/SparseIntVect.h:95:13,
+    inlined from 'void testRDKitFP()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:1461:20:
+/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, int>, std::_Select1st<std::pair<const long long unsigned int, int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, int> > >::const_iterator' changed in GCC 7.1
+  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  514 |                                             std::tuple<const key_type&>(__k),
+      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  515 |                                             std::tuple<>());
+      |                                             ~~~~~~~~~~~~~~~
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, int> >]',
+    inlined from 'void RDKit::SparseIntVect<IndexType>::setVal(IndexType, int) [with IndexType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/DataStructs/SparseIntVect.h:95:13,
+    inlined from 'void testTopologicalTorsionFPOld()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:1593:20:
+/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, int>, std::_Select1st<std::pair<const long long unsigned int, int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, int> > >::const_iterator' changed in GCC 7.1
+  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  514 |                                             std::tuple<const key_type&>(__k),
+      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  515 |                                             std::tuple<>());
+      |                                             ~~~~~~~~~~~~~~~
 In file included from /usr/include/catch2/catch_approx.hpp:11,
                  from /usr/include/catch2/catch_all.hpp:26:
 /usr/include/catch2/catch_tostring.hpp: In function 'std::string Catch::Detail::rangeToString(InputIterator, Sentinel) [with InputIterator = std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >; Sentinel = std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::vector<std::pair<unsigned int, unsigned int> > > >]':
@@ -9410,6 +9343,85 @@
 /usr/include/catch2/catch_tostring.hpp:505:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
   505 |         return ::Catch::Detail::rangeToString( begin( range ), end( range ) );
       |                                                                             ^
+[ 55%] Linking CXX executable testFingerprintGenerators
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1
+[ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/MolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Fragment.cpp
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testFingerprintGenerators.dir/link.d CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators  ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 55%] Built target testFingerprintGenerators
+make  -f Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 56%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -MF CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o.d -o CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/fpgen_catch_tests.cpp
+[ 56%] Linking CXX executable fpTestCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpTestCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/fpTestCatch.dir/link.d CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -o fpTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 56%] Built target fpTestCatch
+make  -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 56%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o -MF CMakeFiles/testMolTransforms.dir/test1.cpp.o.d -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/test1.cpp
+[ 56%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -MF CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o.d -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp
+In file included from /usr/include/c++/14/vector:72,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/test1.cpp:11:
+/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
+/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
+  700 |     vector<_Tp, _Alloc>::
+      |     ^~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/14/vector:66:
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
+    inlined from 'void test1Canonicalization()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/test1.cpp:47:19:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
+    inlined from 'void test1Canonicalization()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/test1.cpp:68:19:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
+    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
+    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
+    inlined from 'void test1Canonicalization()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/test1.cpp:69:19:
+/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
+ 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
+      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 56%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp
+[ 56%] Linking CXX executable testMolTransforms
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMolTransforms.dir/link.d CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 56%] Built target testMolTransforms
+make  -f Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/DependInfo.cmake "--color="
+[ 56%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 56%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/molTransformsTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/molTransformsTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/catch_tests.cpp
+[ 56%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp
 In file included from /usr/include/catch2/catch_approx.hpp:11,
                  from /usr/include/catch2/catch_all.hpp:26,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/fpgen_catch_tests.cpp:11:
@@ -9432,209 +9444,98 @@
 /usr/include/catch2/catch_tostring.hpp:505:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
   505 |         return ::Catch::Detail::rangeToString( begin( range ), end( range ) );
       |                                                                             ^
-[ 60%] Linking CXX executable fpGenTestCatch
+[ 56%] Linking CXX executable fpGenTestCatch
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpGenTestCatch.dir/link.txt --verbose=1
-In file included from /usr/include/c++/14/set:62,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Query/SetQuery.h:13,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Query/QueryObjects.h:29,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:24,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:23,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:13:
-/usr/include/c++/14/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, int> >]':
-/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, int>, std::_Select1st<std::pair<const long long unsigned int, int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, int> > >::const_iterator' changed in GCC 7.1
- 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/map:63,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Atom.h:25:
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, int> >]',
-    inlined from 'void RDKit::SparseIntVect<IndexType>::setVal(IndexType, int) [with IndexType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/DataStructs/SparseIntVect.h:95:13,
-    inlined from 'void testRDKitFP()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:1461:20:
-/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, int>, std::_Select1st<std::pair<const long long unsigned int, int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, int> > >::const_iterator' changed in GCC 7.1
-  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  514 |                                             std::tuple<const key_type&>(__k),
-      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  515 |                                             std::tuple<>());
-      |                                             ~~~~~~~~~~~~~~~
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, int> >]',
-    inlined from 'void RDKit::SparseIntVect<IndexType>::setVal(IndexType, int) [with IndexType = long long unsigned int]' at /build/reproducible-path/rdkit-202409.2/Code/DataStructs/SparseIntVect.h:95:13,
-    inlined from 'void testTopologicalTorsionFPOld()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:1593:20:
-/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, int>, std::_Select1st<std::pair<const long long unsigned int, int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, int> > >::const_iterator' changed in GCC 7.1
-  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  514 |                                             std::tuple<const key_type&>(__k),
-      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  515 |                                             std::tuple<>());
-      |                                             ~~~~~~~~~~~~~~~
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/fpGenTestCatch.dir/link.d CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -o fpGenTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpTestCatch.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o -MF CMakeFiles/testMolTransforms.dir/test1.cpp.o.d -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/test1.cpp
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/fpTestCatch.dir/link.d CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -o fpTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
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-[ 60%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -MF CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o.d -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
-[ 60%] Linking CXX executable testFingerprintGenerators
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testFingerprintGenerators.dir/link.d CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators  ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 57%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -MF CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o.d -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/USRDescriptor.cpp
+[ 58%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp
+[ 59%] Linking CXX executable molTransformsTestCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTransformsTestCatch.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 60%] Built target testFingerprintGenerators
+[ 59%] Built target molTransformsTestCatch
 make  -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/depend
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 60%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o
+[ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -MF CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o.d -o CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF/testMultiThread.cpp
-[ 60%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
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+[ 59%] Linking CXX executable testMMFFForceFieldHelpersMultiThread
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/link.d CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -o testMMFFForceFieldHelpersMultiThread  ../../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 60%] Built target Descriptors
+[ 59%] Built target testMMFFForceFieldHelpersMultiThread
 make  -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 60%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
+[ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -MF CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o.d -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
-[ 61%] Linking CXX executable molTransformsTestCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTransformsTestCatch.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molTransformsTestCatch.dir/link.d CMakeFiles/molTransformsTestCatch.dir/catch_tests.cpp.o -o molTransformsTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 59%] Linking CXX executable testMMFFForceFieldHelpers
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMMFFForceFieldHelpers.dir/link.d CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers  ../../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 61%] Built target molTransformsTestCatch
+[ 59%] Built target testMMFFForceFieldHelpers
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 61%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
+[ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -MF CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o.d -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
-In file included from /usr/include/c++/14/vector:72,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/test1.cpp:11:
-/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
-/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
-  700 |     vector<_Tp, _Alloc>::
-      |     ^~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/vector:66:
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
-    inlined from 'void test1Canonicalization()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/test1.cpp:47:19:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
-    inlined from 'void test1Canonicalization()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/test1.cpp:68:19:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
-    inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
-    inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
-    inlined from 'void test1Canonicalization()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/test1.cpp:69:19:
-/usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
- 1037 |           _M_fill_insert(end(), __new_size - size(), __x);
-      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 61%] Linking CXX executable testMolTransforms
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMolTransforms.dir/link.d CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 59%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o -MF CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o.d -o CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/OxidationNumbers.cpp
+[ 59%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp
+[ 59%] Linking CXX executable testCrystalForceField
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testCrystalForceField.dir/link.d CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField  ../../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 61%] Built target testMolTransforms
+[ 59%] Built target testCrystalForceField
 make  -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
+[ 59%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -MF CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o.d -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
-[ 61%] Linking CXX executable testMMFFForceFieldHelpersMultiThread
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/link.d CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -o testMMFFForceFieldHelpersMultiThread  ../../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
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-[ 61%] Built target testMMFFForceFieldHelpersMultiThread
-make  -f Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/depend
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -MF CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp
-[ 61%] Linking CXX executable testCrystalForceField
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
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-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 61%] Built target testCrystalForceField
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-[ 62%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_MAX_ARITY=32 -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -MF CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o.d -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
-[ 62%] Linking CXX executable testMMFFForceFieldHelpers
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMMFFForceFieldHelpers.dir/link.d CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers  ../../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 62%] Built target testMMFFForceFieldHelpers
-make  -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 62%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DO3AAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -MF CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o.d -o CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
-In file included from /usr/include/c++/14/map:62,
-                 from /usr/include/catch2/internal/catch_reporter_spec_parser.hpp:15,
-                 from /usr/include/catch2/catch_config.hpp:17,
-                 from /usr/include/catch2/catch_all.hpp:30,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp:11:
-/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, RDGeom::Point3D>; _KeyOfValue = std::_Select1st<std::pair<const int, RDGeom::Point3D> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]':
-/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
- 2206 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
-      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, RDGeom::Point3D>; _KeyOfValue = std::_Select1st<std::pair<const int, RDGeom::Point3D> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]':
-/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
- 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 59%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DCLV.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DCLV.cpp.o -MF CMakeFiles/Descriptors.dir/DCLV.cpp.o.d -o CMakeFiles/Descriptors.dir/DCLV.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/DCLV.cpp
+[ 59%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/DCLV.cpp: In member function 'void RDKit::Descriptors::State::generateElemPoints(RDKit::Descriptors::ElemStruct*, double, double, int)':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/DCLV.cpp:298:35: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare]
+  298 |       for (unsigned int j = 0; (i < count) && (j < vert); j++) {
+      |                                 ~~^~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/DCLV.cpp:307:37: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare]
+  307 |         for (unsigned int k = 0; (i < count) && (k < horz); k++) {
+      |                                   ~~^~~~~~~
+[ 59%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o -MF CMakeFiles/Descriptors.dir/EEM.cpp.o.d -o CMakeFiles/Descriptors.dir/EEM.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/EEM.cpp
+[ 59%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp
 In file included from /usr/include/c++/14/set:62,
                  from /build/reproducible-path/rdkit-202409.2/Code/Query/SetQuery.h:13,
                  from /build/reproducible-path/rdkit-202409.2/Code/Query/QueryObjects.h:29,
@@ -9645,34 +9546,19 @@
 /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
  2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/map:63:
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void CATCH2_INTERNAL_TEST_64()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp:928:14:
-/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
-  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  514 |                                             std::tuple<const key_type&>(__k),
-      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  515 |                                             std::tuple<>());
-      |                                             ~~~~~~~~~~~~~~~
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void CATCH2_INTERNAL_TEST_18()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp:462:23:
-/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
-  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  514 |                                             std::tuple<const key_type&>(__k),
-      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  515 |                                             std::tuple<>());
-      |                                             ~~~~~~~~~~~~~~~
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void CATCH2_INTERNAL_TEST_18()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp:493:23:
-/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
-  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  514 |                                             std::tuple<const key_type&>(__k),
-      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  515 |                                             std::tuple<>());
-      |                                             ~~~~~~~~~~~~~~~
+[ 59%] Linking CXX executable testUFFForceFieldHelpers
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testUFFForceFieldHelpers.dir/link.d CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers  ../../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 59%] Built target testUFFForceFieldHelpers
+make  -f Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 59%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -MF CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp
 In file included from /usr/include/c++/14/map:63,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
@@ -9695,46 +9581,7 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
-[ 62%] Linking CXX executable testUFFForceFieldHelpers
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testUFFForceFieldHelpers.dir/link.d CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers  ../../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 62%] Built target testUFFForceFieldHelpers
-make  -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 62%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -MF CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o.d -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/testMolAlign.cpp
-[ 62%] Linking CXX shared library ../../../lib/libRDKitO3AAlign.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/O3AAlign.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/O3AAlign.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitO3AAlign.so.1 -o ../../../lib/libRDKitO3AAlign.so.1.2024.09.2 CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o  ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitO3AAlign.so.1.2024.09.2 ../../../lib/libRDKitO3AAlign.so.1 ../../../lib/libRDKitO3AAlign.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 62%] Built target O3AAlign
-make  -f Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 62%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/catch_tests.cpp
-In file included from /usr/include/c++/14/map:62,
-                 from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:16,
-                 from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
-                 from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDBoost/python.h:5,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:10:
-/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, RDGeom::Point3D>; _KeyOfValue = std::_Select1st<std::pair<const int, RDGeom::Point3D> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]':
-/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
- 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/map:63:
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'int RDKit::EmbedMolecule(ROMol&, unsigned int, int, bool, bool, double, bool, unsigned int, boost::python::dict&, double, bool, bool, bool, bool, bool, bool, bool, unsigned int, bool)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:120:12:
+/usr/include/c++/14/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]':
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9742,8 +9589,10 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
+[ 59%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'RDKit::INT_VECT RDKit::EmbedMultipleConfs(ROMol&, unsigned int, unsigned int, int, bool, bool, double, bool, unsigned int, double, boost::python::dict&, double, bool, bool, int, bool, bool, bool, bool, bool, unsigned int, bool)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:170:12:
+    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:995:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9752,7 +9601,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void {anonymous}::PyEmbedParameters::setCoordMap(const boost::python::dict&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:41:57:
+    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:996:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9760,7 +9609,8 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]':
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
+    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:997:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9768,10 +9618,8 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
-[ 63%] Linking CXX executable distGeomHelpersCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/distGeomHelpersCatch.dir/link.txt --verbose=1
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:995:13:
+    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:998:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9780,7 +9628,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:996:13:
+    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:999:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9789,7 +9637,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:997:13:
+    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1023:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9798,7 +9646,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:998:13:
+    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1024:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9807,7 +9655,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:999:13:
+    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1025:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9816,7 +9664,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1023:13:
+    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1026:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9825,7 +9673,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1024:13:
+    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1027:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9833,8 +9681,23 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/14/map:62,
+                 from /usr/include/catch2/internal/catch_reporter_spec_parser.hpp:15,
+                 from /usr/include/catch2/catch_config.hpp:17,
+                 from /usr/include/catch2/catch_all.hpp:30,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp:11:
+/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, RDGeom::Point3D>; _KeyOfValue = std::_Select1st<std::pair<const int, RDGeom::Point3D> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]':
+/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
+ 2206 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
+      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, RDGeom::Point3D>; _KeyOfValue = std::_Select1st<std::pair<const int, RDGeom::Point3D> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]':
+/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
+ 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 59%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o -MF CMakeFiles/Descriptors.dir/PBF.cpp.o.d -o CMakeFiles/Descriptors.dir/PBF.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/PBF.cpp
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1025:13:
+    inlined from 'void testGithub55()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1385:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9843,7 +9706,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1026:13:
+    inlined from 'void testGithub55()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1386:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9852,7 +9715,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testConstrainedEmbedding()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1027:13:
+    inlined from 'void testGithub55()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1387:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9860,58 +9723,83 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/distGeomHelpersCatch.dir/link.d CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -o distGeomHelpersCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 63%] Built target distGeomHelpersCatch
-make  -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 63%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -MF CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o.d -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
-[ 63%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdDistGeom.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o  ../../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 63%] Built target rdDistGeom
-make  -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 63%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o -MF CMakeFiles/testFeatures.dir/testFeatures.cpp.o.d -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
-[ 63%] Linking CXX executable molAlignCatchTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/molAlignCatchTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molAlignCatchTest.dir/link.d CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -o molAlignCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 59%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp
+In file included from /usr/include/c++/14/map:63:
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
+    inlined from 'void CATCH2_INTERNAL_TEST_64()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp:928:14:
+/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
+  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  514 |                                             std::tuple<const key_type&>(__k),
+      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  515 |                                             std::tuple<>());
+      |                                             ~~~~~~~~~~~~~~~
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
+    inlined from 'void CATCH2_INTERNAL_TEST_18()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp:462:23:
+/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
+  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  514 |                                             std::tuple<const key_type&>(__k),
+      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  515 |                                             std::tuple<>());
+      |                                             ~~~~~~~~~~~~~~~
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
+    inlined from 'void CATCH2_INTERNAL_TEST_18()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp:493:23:
+/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
+  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  514 |                                             std::tuple<const key_type&>(__k),
+      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  515 |                                             std::tuple<>());
+      |                                             ~~~~~~~~~~~~~~~
+[ 60%] Linking CXX executable testDistGeomHelpers
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testDistGeomHelpers.dir/link.d CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers  ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 63%] Built target molAlignCatchTest
-make  -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
+[ 60%] Built target testDistGeomHelpers
+make  -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake "--color="
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-make  -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
+make  -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 63%] Linking CXX executable testMolAlign
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
-[ 63%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -MF CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o.d -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMolAlign.dir/link.d CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_MAX_ARITY=32 -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -MF CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o.d -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
+[ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o -MF CMakeFiles/Descriptors.dir/PMI.cpp.o.d -o CMakeFiles/Descriptors.dir/PMI.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/PMI.cpp
+[ 61%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.cpp
+[ 62%] Linking CXX executable distGeomHelpersCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/distGeomHelpersCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/distGeomHelpersCatch.dir/link.d CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -o distGeomHelpersCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 63%] Built target testMolAlign
-make  -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
+[ 62%] Built target distGeomHelpersCatch
+make  -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake "--color="
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-make  -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
+make  -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 63%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o -MF CMakeFiles/testMolCatalog.dir/test1.cpp.o.d -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog/test1.cpp
+[ 62%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -MF CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o.d -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/testMolAlign.cpp
+[ 62%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -MF CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o.d -o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp
+In file included from /usr/include/c++/14/map:62,
+                 from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:16,
+                 from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
+                 from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDBoost/python.h:5,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:10:
+/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, RDGeom::Point3D>; _KeyOfValue = std::_Select1st<std::pair<const int, RDGeom::Point3D> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]':
+/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
+ 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 62%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp
+In file included from /usr/include/c++/14/map:63:
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testGithub55()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1385:13:
+    inlined from 'int RDKit::EmbedMolecule(ROMol&, unsigned int, int, bool, bool, double, bool, unsigned int, boost::python::dict&, double, bool, bool, bool, bool, bool, bool, bool, unsigned int, bool)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:120:12:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9920,7 +9808,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testGithub55()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1386:13:
+    inlined from 'RDKit::INT_VECT RDKit::EmbedMultipleConfs(ROMol&, unsigned int, unsigned int, int, bool, bool, double, bool, unsigned int, double, boost::python::dict&, double, bool, bool, int, bool, bool, bool, bool, bool, unsigned int, bool)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:170:12:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9929,7 +9817,7 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDGeom::Point3D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]',
-    inlined from 'void testGithub55()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1387:13:
+    inlined from 'void {anonymous}::PyEmbedParameters::setCoordMap(const boost::python::dict&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:41:57:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -9937,20 +9825,40 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function 'RDKit::MolAlign::PyO3A* RDKit::MolAlign::getCrippenO3A(RDKit::ROMol&, RDKit::ROMol&, boost::python::list, boost::python::list, int, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:460:40: warning: comparison of integer expressions of different signedness: 'boost::python::ssize_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
-  460 |       (python::len(prbCrippenContribs) == prbNAtoms)) {
-      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:475:40: warning: comparison of integer expressions of different signedness: 'boost::python::ssize_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
-  475 |       (python::len(refCrippenContribs) == refNAtoms)) {
-      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function 'boost::python::tuple RDKit::MolAlign::getCrippenO3AForConfs(RDKit::ROMol&, RDKit::ROMol&, int, boost::python::list, boost::python::list, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:536:40: warning: comparison of integer expressions of different signedness: 'boost::python::ssize_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
-  536 |       (python::len(prbCrippenContribs) == prbNAtoms)) {
-      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:551:40: warning: comparison of integer expressions of different signedness: 'boost::python::ssize_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
-  551 |       (python::len(refCrippenContribs) == refNAtoms)) {
-      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+[ 62%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o -MF CMakeFiles/Descriptors.dir/RDF.cpp.o.d -o CMakeFiles/Descriptors.dir/RDF.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/RDF.cpp
+[ 62%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.cpp
+[ 62%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
+[ 62%] Linking CXX executable testMolAlign
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdDistGeom.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o  ../../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 62%] Built target rdDistGeom
+make  -f Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 62%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/catch_tests.cpp
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 62%] Built target testMolAlign
+make  -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 62%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o -MF CMakeFiles/testFeatures.dir/testFeatures.cpp.o.d -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
+[ 62%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o -MF CMakeFiles/Descriptors.dir/MORSE.cpp.o.d -o CMakeFiles/Descriptors.dir/MORSE.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/MORSE.cpp
+[ 63%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -9959,6 +9867,21 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
+[ 63%] Linking CXX executable molAlignCatchTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/molAlignCatchTest.dir/link.txt --verbose=1
+[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -MF CMakeFiles/Descriptors.dir/GETAWAY.cpp.o.d -o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molAlignCatchTest.dir/link.d CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -o molAlignCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 64%] Built target molAlignCatchTest
+make  -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 64%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -MF CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o.d -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -9981,8 +9904,6 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 64%] Linking CXX executable testShapeHelpers
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
     inlined from 'void RDKit::Conformer::setAtomPos(U, const RDGeom::Point3D&) [with U = int]' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:131:22,
@@ -10025,29 +9946,42 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 64%] Linking CXX executable testFeatures
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testFeatures.dir/link.d CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures  ../../../lib/libRDKitMolChemicalFeatures.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 64%] Built target testFeatures
+make  -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 64%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o -MF CMakeFiles/testMolCatalog.dir/test1.cpp.o.d -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog/test1.cpp
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp: In function 'Eigen::MatrixXd RDKit::Descriptors::{anonymous}::GetPinv(const Eigen::MatrixXd&)':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp:280:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
+  280 |   for (unsigned int i = 0; i < A.cols(); ++i) {
+      |                            ~~^~~~~~~~~~
+[ 65%] Linking CXX executable testShapeHelpers
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testShapeHelpers.dir/link.d CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers  ../../../lib/libRDKitShapeHelpers.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 64%] Built target testShapeHelpers
+[ 65%] Built target testShapeHelpers
 make  -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 make  -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 64%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
+[ 65%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
-[ 65%] Linking CXX executable testMolCatalog
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
-[ 65%] Linking CXX executable testFeatures
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMolCatalog.dir/link.d CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog  ../../../lib/libRDKitMolCatalog.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 65%] Built target testMolCatalog
-[ 65%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testFeatures.dir/link.d CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures  ../../../lib/libRDKitMolChemicalFeatures.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 65%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolStandardize.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 CMakeFiles/MolStandardize.dir/Pipeline.cpp.o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 65%] Built target testFeatures
+[ 65%] Built target MolStandardize
 make  -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake "--color="
@@ -10056,11 +9990,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 66%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o -MF CMakeFiles/FMCS.dir/FMCS.cpp.o.d -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/FMCS.cpp
-[ 67%] Linking CXX executable testDistGeomHelpers
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testDistGeomHelpers.dir/link.d CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers  ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 67%] Linking CXX executable testMolCatalog
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMolCatalog.dir/link.d CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog  ../../../lib/libRDKitMolCatalog.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 67%] Built target testDistGeomHelpers
+[ 67%] Built target testMolCatalog
 make  -f Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build.make Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolHash /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/DependInfo.cmake "--color="
@@ -10082,19 +10016,32 @@
 /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
  1132 |     make_pair(_T1&& __x, _T2&& __y)
       |     ^~~~~~~~~
-[ 68%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolAlign.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o  ../../../../lib/libRDKitO3AAlign.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 68%] Built target rdMolAlign
-make  -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MMPA /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 68%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o -MF CMakeFiles/MMPA.dir/MMPA.cpp.o.d -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MMPA/MMPA.cpp
+In file included from /usr/include/c++/14/bits/stl_algo.h:61,
+                 from /usr/include/c++/14/algorithm:61,
+                 from /usr/include/boost/iterator/iterator_concepts.hpp:26,
+                 from /usr/include/boost/range/concepts.hpp:20,
+                 from /usr/include/boost/range/size_type.hpp:20,
+                 from /usr/include/boost/range/size.hpp:21,
+                 from /usr/include/boost/range/functions.hpp:20,
+                 from /usr/include/boost/range/iterator_range_core.hpp:38,
+                 from /usr/include/boost/range/iterator_range.hpp:13,
+                 from /usr/include/boost/iostreams/traits.hpp:38,
+                 from /usr/include/boost/iostreams/detail/call_traits.hpp:15,
+                 from /usr/include/boost/iostreams/detail/adapter/device_adapter.hpp:22,
+                 from /usr/include/boost/iostreams/tee.hpp:18,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:17,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RDKitBase.h:21,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp:35:
+/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]':
+/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
+      |     ^~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]':
+/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1770 |     __insertion_sort(_RandomAccessIterator __first,
+      |     ^~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 /usr/include/c++/14/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, RDKit::DrawColour>; _KeyOfValue = std::_Select1st<std::pair<const int, RDKit::DrawColour> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]':
 /usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
  2206 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
@@ -10221,6 +10168,34 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]':
+/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1876 |     __introsort_loop(_RandomAccessIterator __first,
+      |     ^~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1890 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
+      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]',
+    inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = greater<double>]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
+    inlined from 'std::vector<double> RDKit::Descriptors::{anonymous}::clusterArray2(std::vector<double>, unsigned int)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp:221:12:
+/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1905 |           std::__introsort_loop(__first, __last,
+      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
+ 1906 |                                 std::__lg(__last - __first) * 2,
+      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1907 |                                 __comp);
+      |                                 ~~~~~~~
+In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]',
+    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<double> >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
+    inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = greater<double>]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
+    inlined from 'std::vector<double> RDKit::Descriptors::{anonymous}::clusterArray2(std::vector<double>, unsigned int)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/GETAWAY.cpp:221:12:
+/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1817 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
+      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1822 |         std::__insertion_sort(__first, __last, __comp);
+      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
 In file included from /usr/include/c++/14/vector:66,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:21:
 /usr/include/c++/14/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
@@ -10231,6 +10206,8 @@
 /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
  2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 68%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o -MF CMakeFiles/FMCS.dir/Seed.cpp.o.d -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Seed.cpp
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::pair<unsigned int, RDKit::DrawColour>}; _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
     inlined from 'std::__enable_if_t<((bool)std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value), std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<std::pair<const _Key, _Tp> >::other>::iterator, bool> > std::map<_Key, _Tp, _Compare, _Alloc>::insert(_Pair&&) [with _Pair = std::pair<unsigned int, RDKit::DrawColour>; _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]' at /usr/include/c++/14/bits/stl_map.h:859:27,
     inlined from 'void RDKit::MolDraw2D::makeReactionComponents(const std::vector<boost::shared_ptr<RDKit::ROMol> >&, const std::vector<int>*, int, std::map<int, RDKit::DrawColour>&, std::vector<std::shared_ptr<RDKit::MolDraw2D_detail::DrawMol> >&, double&, double&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp:904:36:
@@ -10260,43 +10237,67 @@
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:29:39: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
    29 | const DashPattern shortDashes{2.0, 2.0};
       |                                       ^
-[ 68%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o -MF CMakeFiles/FMCS.dir/Seed.cpp.o.d -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Seed.cpp
+[ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
 [ 68%] Linking CXX executable molHashCatchTest
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/molHashCatchTest.dir/link.txt --verbose=1
-[ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MMPA /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake "--color="
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalMCES.cpp
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+[ 68%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o -MF CMakeFiles/MMPA.dir/MMPA.cpp.o.d -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MMPA/MMPA.cpp
+[ 68%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -MF CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o.d -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
+[ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o -MF CMakeFiles/Descriptors.dir/WHIM.cpp.o.d -o CMakeFiles/Descriptors.dir/WHIM.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/WHIM.cpp
+[ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
 [ 68%] Linking CXX shared library ../../../lib/libRDKitMMPA.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MMPA.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2024.09.2 CMakeFiles/MMPA.dir/MMPA.cpp.o  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2024.09.2 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 68%] Built target MMPA
-make  -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/depend
+make  -f Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/build.make Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build
+make  -f Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/build.make Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 68%] Building CXX object Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDeprotect_EXPORTS -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o -MF CMakeFiles/Deprotect.dir/Deprotect.cpp.o.d -o CMakeFiles/Deprotect.dir/Deprotect.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect/Deprotect.cpp
-[ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -MF CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/AtomSymbol.cpp
-[ 68%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -MF CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o.d -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
+[ 68%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalMCES.cpp
+In file included from /usr/include/c++/14/set:62,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Query/SetQuery.h:13,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Query/QueryObjects.h:29,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/../Atom.h:24,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/../QueryAtom.h:15,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:13:
+/usr/include/c++/14/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, unsigned int>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, unsigned int> >]':
+/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, unsigned int>, std::_Select1st<std::pair<const long long unsigned int, unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, unsigned int> > >::const_iterator' changed in GCC 7.1
+ 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp
+In file included from /usr/include/c++/14/map:63,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/../Atom.h:25:
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, unsigned int>}; _Key = long long unsigned int; _Tp = unsigned int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, unsigned int> >]',
+    inlined from 'std::__enable_if_t<((bool)std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value), std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator, bool> > std::map<_Key, _Tp, _Compare, _Alloc>::insert(_Pair&&) [with _Pair = std::pair<long long unsigned int, unsigned int>; _Key = long long unsigned int; _Tp = unsigned int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, unsigned int> >]' at /usr/include/c++/14/bits/stl_map.h:859:27,
+    inlined from 'void RDKit::FMCS::SubstructureCache::add(const RDKit::FMCS::Seed&, TKey&, TIndexEntry*)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/SubstructureCache.h:153:21:
+/usr/include/c++/14/bits/stl_map.h:640:45: note: parameter passing for argument of type 'std::map<long long unsigned int, unsigned int>::const_iterator' {aka 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, unsigned int>, std::_Select1st<std::pair<const long long unsigned int, unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, unsigned int> > >::const_iterator'} changed in GCC 7.1
+  640 |           return _M_t._M_emplace_hint_unique(__pos,
+      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
+  641 |                                              std::forward<_Args>(__args)...);
+      |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 68%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -MF CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o.d -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
 In file included from /usr/include/c++/14/map:62,
                  from /build/reproducible-path/rdkit-202409.2/Code/Geometry/point.h:17,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2D.h:30,
@@ -10319,6 +10320,17 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/14/regex:52,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalMCES.cpp:21:
+/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, vector<RDKit::RascalMCES::RascalResult> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const RDKit::RascalMCES::RascalResult&, const RDKit::RascalMCES::RascalResult&)>]':
+/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, std::vector<RDKit::RascalMCES::RascalResult> >' changed in GCC 7.1
+ 1750 |     __unguarded_linear_insert(_RandomAccessIterator __last,
+      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, vector<RDKit::RascalMCES::RascalResult> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const RDKit::RascalMCES::RascalResult&, const RDKit::RascalMCES::RascalResult&)>]':
+/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, std::vector<RDKit::RascalMCES::RascalResult> >' changed in GCC 7.1
+ 1770 |     __insertion_sort(_RandomAccessIterator __first,
+      |     ^~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, std::vector<RDKit::RascalMCES::RascalResult> >' changed in GCC 7.1
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
     inlined from 'void RDKit::setMonochromeMode(MolDrawOptions&, const DrawColour&, const DrawColour&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2D.h:559:28,
     inlined from 'void RDKit::MolDraw2DUtils::setACS1996Options(RDKit::MolDrawOptions&, double)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp:544:20:
@@ -10337,38 +10349,11 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
-[ 68%] Linking CXX shared library ../../../lib/libRDKitDeprotect.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect && /usr/bin/cmake -E cmake_link_script CMakeFiles/Deprotect.dir/link.txt --verbose=1
-In file included from /usr/include/c++/14/regex:52,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalMCES.cpp:21:
-/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, vector<RDKit::RascalMCES::RascalResult> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const RDKit::RascalMCES::RascalResult&, const RDKit::RascalMCES::RascalResult&)>]':
-/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, std::vector<RDKit::RascalMCES::RascalResult> >' changed in GCC 7.1
- 1750 |     __unguarded_linear_insert(_RandomAccessIterator __last,
-      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/Deprotect.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitDeprotect.so.1 -o ../../../lib/libRDKitDeprotect.so.1.2024.09.2 CMakeFiles/Deprotect.dir/Deprotect.cpp.o  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDeprotect.so.1.2024.09.2 ../../../lib/libRDKitDeprotect.so.1 ../../../lib/libRDKitDeprotect.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 68%] Built target Deprotect
-make  -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Trajectory /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 68%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -MF CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o.d -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Trajectory/trajectoryTest.cpp
-/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, vector<RDKit::RascalMCES::RascalResult> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const RDKit::RascalMCES::RascalResult&, const RDKit::RascalMCES::RascalResult&)>]':
-/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, std::vector<RDKit::RascalMCES::RascalResult> >' changed in GCC 7.1
- 1770 |     __insertion_sort(_RandomAccessIterator __first,
-      |     ^~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, std::vector<RDKit::RascalMCES::RascalResult> >' changed in GCC 7.1
 In file included from /usr/include/c++/14/bits/stl_algo.h:61:
 /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, vector<RDKit::RascalMCES::RascalResult> >; _Distance = int; _Tp = RDKit::RascalMCES::RascalResult; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const RDKit::RascalMCES::RascalResult&, const RDKit::RascalMCES::RascalResult&)>]':
 /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, std::vector<RDKit::RascalMCES::RascalResult> >' changed in GCC 7.1
   224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
       |     ^~~~~~~~~~~~~
-[ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp
 /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, vector<RDKit::RascalMCES::RascalResult> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const RDKit::RascalMCES::RascalResult&, const RDKit::RascalMCES::RascalResult&)>]':
 /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, std::vector<RDKit::RascalMCES::RascalResult> >' changed in GCC 7.1
   340 |     __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
@@ -10421,16 +10406,46 @@
 /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::RascalResult*, std::vector<RDKit::RascalMCES::RascalResult> >' changed in GCC 7.1
  1822 |         std::__insertion_sort(__first, __last, __comp);
       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/set:62,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Query/SetQuery.h:13,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Query/QueryObjects.h:29,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/../Atom.h:24,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/../QueryAtom.h:15,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:13:
-/usr/include/c++/14/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, unsigned int>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, unsigned int> >]':
-/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, unsigned int>, std::_Select1st<std::pair<const long long unsigned int, unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, unsigned int> > >::const_iterator' changed in GCC 7.1
- 2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 68%] Linking CXX shared library ../../../lib/libRDKitFMCS.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 68%] Built target FMCS
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 68%] Building CXX object Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDeprotect_EXPORTS -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o -MF CMakeFiles/Deprotect.dir/Deprotect.cpp.o.d -o CMakeFiles/Deprotect.dir/Deprotect.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect/Deprotect.cpp
+[ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o
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+[ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o
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+[ 68%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalCluster.cpp
+[ 68%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+[ 68%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
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+[ 68%] Linking CXX shared library ../../../lib/libRDKitDeprotect.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect && /usr/bin/cmake -E cmake_link_script CMakeFiles/Deprotect.dir/link.txt --verbose=1
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 make  -f Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/DependInfo.cmake "--color="
@@ -10439,37 +10454,6 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 68%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o -MF CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o.d -o CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/MolEnumerator.cpp
-In file included from /usr/include/c++/14/map:63,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/../Atom.h:25:
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, unsigned int>}; _Key = long long unsigned int; _Tp = unsigned int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, unsigned int> >]',
-    inlined from 'std::__enable_if_t<((bool)std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value), std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator, bool> > std::map<_Key, _Tp, _Compare, _Alloc>::insert(_Pair&&) [with _Pair = std::pair<long long unsigned int, unsigned int>; _Key = long long unsigned int; _Tp = unsigned int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, unsigned int> >]' at /usr/include/c++/14/bits/stl_map.h:859:27,
-    inlined from 'void RDKit::FMCS::SubstructureCache::add(const RDKit::FMCS::Seed&, TKey&, TIndexEntry*)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/SubstructureCache.h:153:21:
-/usr/include/c++/14/bits/stl_map.h:640:45: note: parameter passing for argument of type 'std::map<long long unsigned int, unsigned int>::const_iterator' {aka 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, unsigned int>, std::_Select1st<std::pair<const long long unsigned int, unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, unsigned int> > >::const_iterator'} changed in GCC 7.1
-  640 |           return _M_t._M_emplace_hint_unique(__pos,
-      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
-  641 |                                              std::forward<_Args>(__args)...);
-      |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 68%] Linking CXX executable trajectoryTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/trajectoryTest.dir/link.d CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 68%] Built target trajectoryTest
-make  -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 68%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/External/rapidjson-1.1.0/include -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -MF CMakeFiles/molInterchangeTest1.dir/test1.cpp.o.d -o CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange/test1.cpp
-[ 68%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalCluster.cpp
-[ 69%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp
-[ 69%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -MF CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o.d -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
 In file included from /usr/include/c++/14/bits/stl_algo.h:61,
                  from /usr/include/c++/14/algorithm:61,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalCluster.cpp:19:
@@ -10527,8 +10511,8 @@
 /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
  1822 |         std::__insertion_sort(__first, __last, __comp);
       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-[ 69%] Linking CXX shared library ../../../lib/libRDKitFMCS.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
+[ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp
 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::RascalMCES::details::ClusNode*, vector<RDKit::RascalMCES::details::ClusNode> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::RascalMCES::details::formInitialClusters(const std::vector<unsigned int>&, const std::vector<std::vector<ClusNode> >&, const RDKit::RascalMCES::RascalClusterOptions&)::<lambda(const RDKit::RascalMCES::details::ClusNode&, const RDKit::RascalMCES::details::ClusNode&)> >]':
 /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::details::ClusNode*, std::vector<RDKit::RascalMCES::details::ClusNode> >' changed in GCC 7.1
  1876 |     __introsort_loop(_RandomAccessIterator __first,
@@ -10537,8 +10521,6 @@
 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::details::ClusNode*, std::vector<RDKit::RascalMCES::details::ClusNode> >' changed in GCC 7.1
  1890 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 69%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o -MF CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o.d -o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/PositionVariation.cpp
 In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::RascalMCES::details::ClusNode*, vector<RDKit::RascalMCES::details::ClusNode> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::RascalMCES::details::formInitialClusters(const std::vector<unsigned int>&, const std::vector<std::vector<ClusNode> >&, const RDKit::RascalMCES::RascalClusterOptions&)::<lambda(const RDKit::RascalMCES::details::ClusNode&, const RDKit::RascalMCES::details::ClusNode&)> >]',
     inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<RDKit::RascalMCES::details::ClusNode*, vector<RDKit::RascalMCES::details::ClusNode> >; _Compare = RDKit::RascalMCES::details::formInitialClusters(const std::vector<unsigned int>&, const std::vector<std::vector<ClusNode> >&, const RDKit::RascalMCES::RascalClusterOptions&)::<lambda(const RDKit::RascalMCES::details::ClusNode&, const RDKit::RascalMCES::details::ClusNode&)>]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
     inlined from 'std::vector<std::vector<unsigned int> > RDKit::RascalMCES::details::formInitialClusters(const std::vector<unsigned int>&, const std::vector<std::vector<ClusNode> >&, const RDKit::RascalMCES::RascalClusterOptions&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalCluster.cpp:243:14:
@@ -10559,52 +10541,25 @@
 /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::RascalMCES::details::ClusNode*, std::vector<RDKit::RascalMCES::details::ClusNode> >' changed in GCC 7.1
  1822 |         std::__insertion_sort(__first, __last, __comp);
       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/FMCS.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2024.09.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 69%] Built target FMCS
-[ 69%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp
-[ 69%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o
+[ 68%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalButinaCluster.cpp
-[ 69%] Linking CXX executable molInterchangeTest1
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/molInterchangeTest1.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molInterchangeTest1.dir/link.d CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -o molInterchangeTest1  ../../../lib/libRDKitMolInterchange.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+[ 68%] Linking CXX executable trajectoryTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/trajectoryTest.dir/link.d CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 69%] Built target molInterchangeTest1
-make  -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/depend
+[ 68%] Built target trajectoryTest
+make  -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake "--color="
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-make  -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/build
+make  -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 69%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/External/rapidjson-1.1.0/include -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o -MF CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o.d -o CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange/molinterchange_catch.cpp
-In file included from /usr/include/c++/14/vector:66,
-                 from /usr/include/boost/graph/adjacency_list.hpp:16,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ROMol.h:29,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp:13:
-/usr/include/c++/14/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
-/usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-  678 |       vector(initializer_list<value_type> __l,
-      |       ^~~~~~
-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.h:26,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.h:20,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp:15:
-In function 'void __static_initialization_and_destruction_0()',
-    inlined from '(static initializers for /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp:51:1:
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:27:32: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-   27 | const DashPattern dots{2.0, 6.0};
-      |                                ^
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:28:34: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-   28 | const DashPattern dashes{6.0, 4.0};
-      |                                  ^
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:29:39: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-   29 | const DashPattern shortDashes{2.0, 2.0};
-      |                                       ^
-[ 69%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp
+[ 68%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/External/rapidjson-1.1.0/include -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -MF CMakeFiles/molInterchangeTest1.dir/test1.cpp.o.d -o CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange/test1.cpp
+[ 69%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp
+[ 69%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o -MF CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o.d -o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/PositionVariation.cpp
 In file included from /usr/include/c++/14/bits/stl_algo.h:61,
                  from /usr/include/c++/14/algorithm:61,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalButinaCluster.cpp:15:
@@ -10629,6 +10584,47 @@
 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
  1890 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)::<lambda(const pair<unsigned int, double>&, const pair<unsigned int, double>&)> >]',
+    inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)::<lambda(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
+    inlined from 'std::vector<std::vector<unsigned int> > RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalButinaCluster.cpp:43:14:
+/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
+ 1905 |           std::__introsort_loop(__first, __last,
+      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
+ 1906 |                                 std::__lg(__last - __first) * 2,
+      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1907 |                                 __comp);
+      |                                 ~~~~~~~
+In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)::<lambda(const pair<unsigned int, double>&, const pair<unsigned int, double>&)> >]',
+    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)::<lambda(const pair<unsigned int, double>&, const pair<unsigned int, double>&)> >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
+    inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)::<lambda(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
+    inlined from 'std::vector<std::vector<unsigned int> > RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalButinaCluster.cpp:43:14:
+/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
+ 1817 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
+      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
+ 1822 |         std::__insertion_sort(__first, __last, __comp);
+      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+[ 69%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o -MF CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o.d -o CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/lap_a_la_scipy.cpp
+[ 69%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o -MF CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o.d -o CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/PartitionSet.cpp
+[ 69%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalResult.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalResult.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalResult.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalResult.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalResult.cpp
+[ 69%] Linking CXX executable molInterchangeTest1
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/molInterchangeTest1.dir/link.txt --verbose=1
+[ 69%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o -MF CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o.d -o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/LinkNode.cpp
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molInterchangeTest1.dir/link.d CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -o molInterchangeTest1  ../../../lib/libRDKitMolInterchange.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 69%] Built target molInterchangeTest1
+make  -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 69%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/External/rapidjson-1.1.0/include -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o -MF CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o.d -o CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange/molinterchange_catch.cpp
 In file included from /usr/include/c++/14/bits/stl_algo.h:61,
                  from /usr/include/c++/14/algorithm:61,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp:13:
@@ -10658,32 +10654,10 @@
 /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point2D*, std::vector<RDGeom::Point2D> >' changed in GCC 7.1
   224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
       |     ^~~~~~~~~~~~~
-In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)::<lambda(const pair<unsigned int, double>&, const pair<unsigned int, double>&)> >]',
-    inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)::<lambda(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
-    inlined from 'std::vector<std::vector<unsigned int> > RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalButinaCluster.cpp:43:14:
-/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
- 1905 |           std::__introsort_loop(__first, __last,
-      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
- 1906 |                                 std::__lg(__last - __first) * 2,
-      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1907 |                                 __comp);
-      |                                 ~~~~~~~
-In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)::<lambda(const pair<unsigned int, double>&, const pair<unsigned int, double>&)> >]',
-    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)::<lambda(const pair<unsigned int, double>&, const pair<unsigned int, double>&)> >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
-    inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)::<lambda(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
-    inlined from 'std::vector<std::vector<unsigned int> > RDKit::RascalMCES::details::buildNborLists(const std::vector<std::vector<ClusNode> >&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalButinaCluster.cpp:43:14:
-/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
- 1817 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
-      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
- 1822 |         std::__insertion_sort(__first, __last, __comp);
-      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDGeom::Point2D*, vector<RDGeom::Point2D> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<RDKit::MolDraw2D_detail::DrawMol::makeBondHighlightLines(double, double)::<lambda(RDGeom::Point2D&, RDGeom::Point2D&)> >]':
 /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point2D*, std::vector<RDGeom::Point2D> >' changed in GCC 7.1
  1750 |     __unguarded_linear_insert(_RandomAccessIterator __last,
       |     ^~~~~~~~~~~~~~~~~~~~~~~~~
-[ 69%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o -MF CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o.d -o CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/lap_a_la_scipy.cpp
 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDGeom::Point2D*, vector<RDGeom::Point2D> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RDKit::MolDraw2D_detail::DrawMol::makeBondHighlightLines(double, double)::<lambda(RDGeom::Point2D&, RDGeom::Point2D&)> >]':
 /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point2D*, std::vector<RDGeom::Point2D> >' changed in GCC 7.1
  1770 |     __insertion_sort(_RandomAccessIterator __first,
@@ -10717,10 +10691,6 @@
 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point2D*, std::vector<RDGeom::Point2D> >' changed in GCC 7.1
  1890 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 69%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o -MF CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o.d -o CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/PartitionSet.cpp
-[ 69%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o -MF CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o.d -o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/LinkNode.cpp
 In file included from /usr/include/c++/14/vector:66,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDLog.h:22,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:22,
@@ -10732,36 +10702,8 @@
 /usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
   678 |       vector(initializer_list<value_type> __l,
       |       ^~~~~~
-[ 69%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalResult.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalResult.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalResult.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalResult.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/RascalResult.cpp
 /usr/include/c++/14/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = RDGeom::Point2D; _Alloc = std::allocator<RDGeom::Point2D>]':
 /usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type 'std::initializer_list<RDGeom::Point2D>' changed in GCC 7.1
-In file included from /usr/include/c++/14/vector:66,
-                 from /usr/include/boost/graph/adjacency_list.hpp:16,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ROMol.h:29,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.h:22,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp:15:
-/usr/include/c++/14/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
-/usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-  678 |       vector(initializer_list<value_type> __l,
-      |       ^~~~~~
-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.h:26,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.h:20,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.h:16,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp:17:
-In function 'void __static_initialization_and_destruction_0()',
-    inlined from '(static initializers for /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp:302:1:
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:27:32: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-   27 | const DashPattern dots{2.0, 6.0};
-      |                                ^
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:28:34: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-   28 | const DashPattern dashes{6.0, 4.0};
-      |                                  ^
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:29:39: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-   29 | const DashPattern shortDashes{2.0, 2.0};
-      |                                       ^
-[ 69%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHLasso.cpp
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp: In member function 'void RDKit::MolDraw2D_detail::DrawMol::makeQueryBond(RDKit::Bond*, double)':
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp:1823:48: note: parameter passing for argument of type 'std::initializer_list<RDGeom::Point2D>' changed in GCC 7.1
  1823 |                                  midp + segment};
@@ -10845,6 +10787,130 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 69%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o -MF CMakeFiles/rdmolops.dir/rdmolops.cpp.o.d -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/rdmolops.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.h:26,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp:28:
+In function 'void __static_initialization_and_destruction_0()',
+    inlined from '(static initializers for /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp:3841:1:
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:27:32: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+   27 | const DashPattern dots{2.0, 6.0};
+      |                                ^
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:28:34: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+   28 | const DashPattern dashes{6.0, 4.0};
+      |                                  ^
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:29:39: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+   29 | const DashPattern shortDashes{2.0, 2.0};
+      |                                       ^
+[ 70%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -MF CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o.d -o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/RepeatUnit.cpp
+[ 71%] Linking CXX shared library ../../../lib/libRDKitRascalMCES.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_link_script CMakeFiles/RascalMCES.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/RascalMCES.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitRascalMCES.so.1 -o ../../../lib/libRDKitRascalMCES.so.1.2024.09.2 CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o CMakeFiles/RascalMCES.dir/RascalResult.cpp.o  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRascalMCES.so.1.2024.09.2 ../../../lib/libRDKitRascalMCES.so.1 ../../../lib/libRDKitRascalMCES.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Built target RascalMCES
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o -MF CMakeFiles/molStandardizeTest.dir/test1.cpp.o.d -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/test1.cpp
+[ 71%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp
+[ 71%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o -MF CMakeFiles/rdmolops.dir/MolOps.cpp.o.d -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MolOps.cpp
+In file included from /usr/include/c++/14/vector:66,
+                 from /usr/include/boost/graph/adjacency_list.hpp:16,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ROMol.h:29,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp:13:
+/usr/include/c++/14/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
+/usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+  678 |       vector(initializer_list<value_type> __l,
+      |       ^~~~~~
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.h:26,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.h:20,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp:15:
+In function 'void __static_initialization_and_destruction_0()',
+    inlined from '(static initializers for /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp:51:1:
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:27:32: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+   27 | const DashPattern dots{2.0, 6.0};
+      |                                ^
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:28:34: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+   28 | const DashPattern dashes{6.0, 4.0};
+      |                                  ^
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:29:39: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+   29 | const DashPattern shortDashes{2.0, 2.0};
+      |                                       ^
+[ 71%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp
+[ 71%] Linking CXX shared library ../../../lib/libRDKitMolEnumerator.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolEnumerator.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolEnumerator.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolEnumerator.so.1 -o ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1 ../../../lib/libRDKitMolEnumerator.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Built target MolEnumerator
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -MF CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o.d -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/testNormalize.cpp
+In file included from /usr/include/c++/14/vector:66,
+                 from /usr/include/boost/graph/adjacency_list.hpp:16,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ROMol.h:29,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RWMol.h:22,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp:15:
+/usr/include/c++/14/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
+/usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+  678 |       vector(initializer_list<value_type> __l,
+      |       ^~~~~~
+[ 71%] Linking CXX executable molStandardizeTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.h:26,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.h:20,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.h:16,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp:17:
+In function 'void __static_initialization_and_destruction_0()',
+    inlined from '(static initializers for /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp:302:1:
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:27:32: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+   27 | const DashPattern dots{2.0, 6.0};
+      |                                ^
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:28:34: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+   28 | const DashPattern dashes{6.0, 4.0};
+      |                                  ^
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:29:39: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
+   29 | const DashPattern shortDashes{2.0, 2.0};
+      |                                       ^
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molStandardizeTest.dir/link.d CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Built target molStandardizeTest
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o -MF CMakeFiles/molValidateTest.dir/testValidate.cpp.o.d -o CMakeFiles/molValidateTest.dir/testValidate.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/testValidate.cpp
+[ 71%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHLasso.cpp
+[ 71%] Linking CXX executable molNormalizeTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molNormalizeTest.dir/link.d CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -o molNormalizeTest  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Built target molNormalizeTest
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o -MF CMakeFiles/molChargeTest.dir/testCharge.cpp.o.d -o CMakeFiles/molChargeTest.dir/testCharge.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/testCharge.cpp
 In file included from /usr/include/c++/14/algorithm:61,
                  from /usr/include/boost/move/algorithm.hpp:31,
                  from /usr/include/boost/move/move.hpp:32,
@@ -10869,19 +10935,6 @@
 /usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
   678 |       vector(initializer_list<value_type> __l,
       |       ^~~~~~
-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.h:26,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp:28:
-In function 'void __static_initialization_and_destruction_0()',
-    inlined from '(static initializers for /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.cpp:3841:1:
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:27:32: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-   27 | const DashPattern dots{2.0, 6.0};
-      |                                ^
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:28:34: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-   28 | const DashPattern dashes{6.0, 4.0};
-      |                                  ^
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:29:39: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
-   29 | const DashPattern shortDashes{2.0, 2.0};
-      |                                       ^
 In file included from /usr/include/c++/14/vector:62:
 In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = int; _Up = int; bool _IsMove = false]',
     inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = int*; _OI = int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
@@ -10975,8 +11028,6 @@
 /usr/include/c++/14/bits/stl_algo.h:1908:38: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
  1908 |           std::__final_insertion_sort(__first, __last, __comp);
       |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-[ 70%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -MF CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o.d -o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/RepeatUnit.cpp
 In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMol.h:26,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCH.h:20,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawMolMCHLasso.h:13,
@@ -10992,12 +11043,47 @@
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:29:39: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
    29 | const DashPattern shortDashes{2.0, 2.0};
       |                                       ^
-[ 70%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o
+[ 71%] Linking CXX executable molValidateTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molValidateTest.dir/link.txt --verbose=1
+[ 71%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.cpp
-[ 70%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o -MF CMakeFiles/rdmolops.dir/MolOps.cpp.o.d -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MolOps.cpp
-[ 70%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -MF CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o.d -o CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/ChiralityOps.cpp
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molValidateTest.dir/link.d CMakeFiles/molValidateTest.dir/testValidate.cpp.o -o molValidateTest  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Built target molValidateTest
+[ 71%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawText.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawText.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawText.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MolOps.cpp:36:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
+                 from /usr/include/c++/14/string:51,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawText.h:19,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawText.cpp:13:
+/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawText.cpp:165:47:   required from here
+  165 |     tl = mol_draw.getAtomCoords(std::make_pair(tl.x, tl.y));
+      |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+ 1132 |     make_pair(_T1&& __x, _T2&& __y)
+      |     ^~~~~~~~~
 In file included from /usr/include/c++/14/vector:66,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h:15,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.cpp:15:
@@ -11005,6 +11091,19 @@
 /usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
   678 |       vector(initializer_list<value_type> __l,
       |       ^~~~~~
+[ 71%] Linking CXX executable molChargeTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molChargeTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molChargeTest.dir/link.d CMakeFiles/molChargeTest.dir/testCharge.cpp.o -o molChargeTest  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Built target molChargeTest
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 71%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -MF CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o.d -o CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/testTautomer.cpp
 In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.cpp:16:
 In function 'void __static_initialization_and_destruction_0()',
     inlined from '(static initializers for /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.cpp)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.cpp:730:1:
@@ -11017,47 +11116,6 @@
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawShape.h:29:39: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
    29 | const DashPattern shortDashes{2.0, 2.0};
       |                                       ^
-[ 70%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawText.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawText.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawText.cpp
-[ 71%] Linking CXX shared library ../../../lib/libRDKitRascalMCES.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_link_script CMakeFiles/RascalMCES.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/RascalMCES.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitRascalMCES.so.1 -o ../../../lib/libRDKitRascalMCES.so.1.2024.09.2 CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o CMakeFiles/RascalMCES.dir/RascalResult.cpp.o  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRascalMCES.so.1.2024.09.2 ../../../lib/libRDKitRascalMCES.so.1 ../../../lib/libRDKitRascalMCES.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 71%] Built target RascalMCES
-make  -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 71%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o -MF CMakeFiles/molStandardizeTest.dir/test1.cpp.o.d -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/test1.cpp
-In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
-                 from /usr/include/c++/14/string:51,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawText.h:19,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawText.cpp:13:
-/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/DrawText.cpp:165:47:   required from here
-  165 |     tl = mol_draw.getAtomCoords(std::make_pair(tl.x, tl.y));
-      |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
- 1132 |     make_pair(_T1&& __x, _T2&& __y)
-      |     ^~~~~~~~~
-[ 71%] Linking CXX shared library ../../../lib/libRDKitMolEnumerator.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolEnumerator.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolEnumerator.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolEnumerator.so.1 -o ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1 ../../../lib/libRDKitMolEnumerator.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 71%] Built target MolEnumerator
-make  -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake "--color="
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 71%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -MF CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o.d -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/testNormalize.cpp
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@@ -11068,47 +11126,10 @@
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 [ 72%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o
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-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MolOps.cpp:36:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-[ 72%] Linking CXX executable molNormalizeTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1
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+[ 72%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -MF CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o.d -o CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/ChiralityOps.cpp
 [ 72%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o
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 [ 72%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o
@@ -11117,27 +11138,11 @@
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 [ 72%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o
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+[ 72%] Linking CXX executable molTautomerTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molTautomerTest.dir/link.d CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -o molTautomerTest  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake "--color="
@@ -11146,12 +11151,6 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 72%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -MF CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o.d -o CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/test2.cpp
-[ 72%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolDraw2D.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o CMakeFiles/MolDraw2D.dir/DrawText.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextCairo.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libfreetype.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcairo.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 72%] Built target MolDraw2D
 make  -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake "--color="
@@ -11160,37 +11159,38 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -MF CMakeFiles/molFragmentTest.dir/testFragment.cpp.o.d -o CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/testFragment.cpp
-[ 72%] Linking CXX executable molStandardizeSmallTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1
-[ 72%] Linking CXX executable molChargeTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molChargeTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molChargeTest.dir/link.d CMakeFiles/molChargeTest.dir/testCharge.cpp.o -o molChargeTest  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 72%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolDraw2D.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o CMakeFiles/MolDraw2D.dir/DrawText.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextCairo.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libfreetype.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcairo.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
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-[ 72%] Built target molChargeTest
+[ 72%] Built target MolDraw2D
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-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molStandardizeSmallTest.dir/link.d CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -o molStandardizeSmallTest  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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-[ 72%] Built target molStandardizeSmallTest
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/DependInfo.cmake "--color="
 [ 72%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/catch_tests.cpp
+[ 72%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdmolops.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 72%] Built target rdmolops
+make  -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 make  -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 73%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o -MF CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o.d -o CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/testPipeline.cpp
-[ 73%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdmolops.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 73%] Linking CXX executable molStandardizeSmallTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molStandardizeSmallTest.dir/link.d CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -o molStandardizeSmallTest  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 73%] Built target rdmolops
+[ 73%] Built target molStandardizeSmallTest
 make  -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake "--color="
@@ -11212,50 +11212,39 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 73%] Building CXX object Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SCAFFOLDNETWORK_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DScaffoldNetwork_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -MF CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o.d -o CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ScaffoldNetwork/ScaffoldNetwork.cpp
-[ 73%] Linking CXX executable molTautomerTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molTautomerTest.dir/link.d CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -o molTautomerTest  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 74%] Linking CXX shared library ../../../lib/libRDKitScaffoldNetwork.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScaffoldNetwork.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ScaffoldNetwork.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitScaffoldNetwork.so.1 -o ../../../lib/libRDKitScaffoldNetwork.so.1.2024.09.2 CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitScaffoldNetwork.so.1.2024.09.2 ../../../lib/libRDKitScaffoldNetwork.so.1 ../../../lib/libRDKitScaffoldNetwork.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 73%] Built target molTautomerTest
+[ 74%] Built target ScaffoldNetwork
 make  -f Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/DependInfo.cmake "--color="
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 73%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o
+[ 74%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o -MF CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o.d -o CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/enumerator_catch.cpp
-[ 74%] Linking CXX shared library ../../../lib/libRDKitScaffoldNetwork.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScaffoldNetwork.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/ScaffoldNetwork.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitScaffoldNetwork.so.1 -o ../../../lib/libRDKitScaffoldNetwork.so.1.2024.09.2 CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o  ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitScaffoldNetwork.so.1.2024.09.2 ../../../lib/libRDKitScaffoldNetwork.so.1 ../../../lib/libRDKitScaffoldNetwork.so
+[ 75%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Validate.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Validate.cpp
+[ 75%] Linking CXX executable molStandardizePipelineTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizePipelineTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molStandardizePipelineTest.dir/link.d CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o -o molStandardizePipelineTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 74%] Built target ScaffoldNetwork
+[ 75%] Built target molStandardizePipelineTest
 make  -f Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/DependInfo.cmake "--color="
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 75%] Building CXX object Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o
+[ 76%] Building CXX object Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolEnumerator_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -MF CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o.d -o CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/Wrap/rdMolEnumerator.cpp
-[ 76%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Validate.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Validate.cpp
-[ 76%] Linking CXX executable molStandardizePipelineTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizePipelineTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/molStandardizePipelineTest.dir/link.d CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o -o molStandardizePipelineTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 76%] Built target molStandardizePipelineTest
-[ 76%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Charge.cpp
-[ 76%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdMolEnumerator.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolEnumerator.dir/link.txt --verbose=1
 [ 76%] Built target molStandardizeCatchTest
 make  -f Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/catch_tests.cpp.o -MF CMakeFiles/testAbbreviations.dir/catch_tests.cpp.o.d -o CMakeFiles/testAbbreviations.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Abbreviations/catch_tests.cpp
+[ 76%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Charge.cpp
+[ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdMolEnumerator.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolEnumerator.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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@@ -11276,46 +11269,40 @@
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolProcessing_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLPROCESSING_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolProcessing/CMakeFiles/MolProcessing.dir/MolProcessing.cpp.o -MF CMakeFiles/MolProcessing.dir/MolProcessing.cpp.o.d -o CMakeFiles/MolProcessing.dir/MolProcessing.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolProcessing/MolProcessing.cpp
-[ 76%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp
-[ 77%] Linking CXX shared library ../../../lib/libRDKitMolProcessing.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolProcessing.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolProcessing.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolProcessing.so.1 -o ../../../lib/libRDKitMolProcessing.so.1.2024.09.2 CMakeFiles/MolProcessing.dir/MolProcessing.cpp.o  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitRDStreams.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolProcessing.so.1.2024.09.2 ../../../lib/libRDKitMolProcessing.so.1 ../../../lib/libRDKitMolProcessing.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 77%] Built target MolProcessing
-[ 77%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Metal.cpp
-[ 77%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp
-[ 77%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Pipeline.cpp
-[ 77%] Linking CXX executable testMolEnumerator
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+[ 76%] Linking CXX executable testAbbreviations
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAbbreviations.dir/link.txt --verbose=1
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-[ 77%] Linking CXX executable testAbbreviations
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+[ 76%] Linking CXX executable testMolEnumerator
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolEnumerator.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMolEnumerator.dir/link.d CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o -o testMolEnumerator  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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-[ 77%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o
+[ 76%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_TAUTOMERQUERY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DTautomerQuery_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -MF CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o.d -o CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/TautomerQuery/TautomerQuery.cpp
+[ 76%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp
+[ 77%] Linking CXX shared library ../../../lib/libRDKitMolProcessing.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolProcessing.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MolProcessing.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMolProcessing.so.1 -o ../../../lib/libRDKitMolProcessing.so.1.2024.09.2 CMakeFiles/MolProcessing.dir/MolProcessing.cpp.o  ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitRDStreams.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolProcessing.so.1.2024.09.2 ../../../lib/libRDKitMolProcessing.so.1 ../../../lib/libRDKitMolProcessing.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 77%] Built target MolProcessing
 make  -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake "--color="
@@ -11324,25 +11311,6 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o -MF CMakeFiles/testDescriptors.dir/test.cpp.o.d -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/test.cpp
-In file included from /usr/include/boost/python/override.hpp:13,
-                 from /usr/include/boost/python/wrapper.hpp:8,
-                 from /usr/include/boost/python/object/value_holder.hpp:15,
-                 from /usr/include/boost/python/object/class_metadata.hpp:14,
-                 from /usr/include/boost/python/class.hpp:23,
-                 from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:9,
-                 from /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:9,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp:11:
-In member function 'boost::python::converter::extract_rvalue<T>::result_type boost::python::converter::extract_rvalue<T>::operator()() const [with T = int]',
-    inlined from 'boost::python::extract<T>::operator result_type() const [with T = int]' at /usr/include/boost/python/extract.hpp:136:23,
-    inlined from 'int {anonymous}::pyobjFunctor::operator()(const RDKit::ROMol&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp:218:20,
-    inlined from 'static R boost::detail::function::function_obj_invoker1<FunctionObj, R, T0>::invoke(boost::detail::function::function_buffer&, T0) [with FunctionObj = {anonymous}::pyobjFunctor; R = int; T0 = const RDKit::ROMol&]' at /usr/include/boost/function/function_template.hpp:137:22:
-/usr/include/boost/python/extract.hpp:185:11: warning: '*(int*)((char*)&<unnamed> + offsetof(boost::python::extract<int>,boost::python::extract<int>::<unnamed>.boost::python::converter::extract_rvalue<int>::m_data.boost::python::converter::rvalue_from_python_data<int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |           );
-      |           ^
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp: In static member function 'static R boost::detail::function::function_obj_invoker1<FunctionObj, R, T0>::invoke(boost::detail::function::function_buffer&, T0) [with FunctionObj = {anonymous}::pyobjFunctor; R = int; T0 = const RDKit::ROMol&]':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp:218:54: note: '<anonymous>' declared here
-  218 |     return python::extract<int>(dp_obj(boost::ref(m)));
-      |                                                      ^
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MarvinParse/MarvinParser.cpp:17:
 /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
@@ -11362,108 +11330,39 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-make  -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake "--color="
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -MF CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o.d -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp
 [ 78%] Linking CXX shared library ../../../lib/libRDKitTautomerQuery.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_link_script CMakeFiles/TautomerQuery.dir/link.txt --verbose=1
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1 ../../../lib/libRDKitTautomerQuery.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 78%] Built target TautomerQuery
-make  -f Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/depend
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake "--color="
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/testATF.cpp.o -MF CMakeFiles/testATF.dir/testATF.cpp.o.d -o CMakeFiles/testATF.dir/testATF.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testATF.cpp
+[ 79%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Metal.cpp
 In file included from /usr/include/c++/14/algorithm:61,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MarvinParse/MarvinWriter.cpp:18:
 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::MarvinRectangle*, vector<RDKit::MarvinRectangle> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(RDKit::MarvinRectangle&, RDKit::MarvinRectangle&)>]':
@@ -11486,13 +11385,24 @@
 /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::MarvinRectangle*, std::vector<RDKit::MarvinRectangle> >' changed in GCC 7.1
  1822 |         std::__insertion_sort(__first, __last, __comp);
       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+[ 79%] Linking CXX executable testATF
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testATF.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testATF.dir/link.d CMakeFiles/testATF.dir/testATF.cpp.o -o testATF  ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 79%] Built target testATF
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 79%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/testBCUT.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/testBCUT.cpp.o -MF CMakeFiles/testBCUT.dir/testBCUT.cpp.o.d -o CMakeFiles/testBCUT.dir/testBCUT.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testBCUT.cpp
 In file included from /usr/include/c++/14/bits/stl_algo.h:61:
 /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::MarvinRectangle*, vector<RDKit::MarvinRectangle> >; _Distance = int; _Tp = RDKit::MarvinRectangle; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(RDKit::MarvinRectangle&, RDKit::MarvinRectangle&)>]':
 /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::MarvinRectangle*, std::vector<RDKit::MarvinRectangle> >' changed in GCC 7.1
   224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
       |     ^~~~~~~~~~~~~
-[ 80%] Linking CXX executable testPBF
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPBF.dir/link.txt --verbose=1
 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::MarvinRectangle*, vector<RDKit::MarvinRectangle> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(RDKit::MarvinRectangle&, RDKit::MarvinRectangle&)>]':
 /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::MarvinRectangle*, std::vector<RDKit::MarvinRectangle> >' changed in GCC 7.1
  1876 |     __introsort_loop(_RandomAccessIterator __first,
@@ -11501,17 +11411,6 @@
 /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::MarvinRectangle*, std::vector<RDKit::MarvinRectangle> >' changed in GCC 7.1
  1890 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testPBF.dir/link.d CMakeFiles/testPBF.dir/testPBF.cpp.o -o testPBF  ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 80%] Built target testPBF
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/DependInfo.cmake "--color="
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/test3D.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/test3D.cpp.o -MF CMakeFiles/test3D.dir/test3D.cpp.o.d -o CMakeFiles/test3D.dir/test3D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/test3D.cpp
 In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<RDKit::MarvinRectangle*, vector<RDKit::MarvinRectangle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(RDKit::MarvinRectangle&, RDKit::MarvinRectangle&)>]',
     inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<RDKit::MarvinRectangle*, vector<RDKit::MarvinRectangle> >; _Compare = bool (*)(RDKit::MarvinRectangle&, RDKit::MarvinRectangle&)]' at /usr/include/c++/14/bits/stl_algo.h:4804:18,
     inlined from 'double RDKit::MarvinCMLWriter::GetArrowPerdendicularPosition(std::vector<std::unique_ptr<RDKit::MarvinMol> >&, bool)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MarvinParse/MarvinWriter.cpp:855:16:
@@ -11551,47 +11450,122 @@
 /usr/include/c++/14/bits/stl_algo.h:1908:38: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::MarvinRectangle*, std::vector<RDKit::MarvinRectangle> >' changed in GCC 7.1
  1908 |           std::__final_insertion_sort(__first, __last, __comp);
       |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-[ 80%] Building CXX object Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o
+[ 79%] Linking CXX executable testDescriptors
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testDescriptors.dir/link.d CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors  ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 79%] Built target testDescriptors
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 79%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/testEEM.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/testEEM.cpp.o -MF CMakeFiles/testEEM.dir/testEEM.cpp.o.d -o CMakeFiles/testEEM.dir/testEEM.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testEEM.cpp
+[ 79%] Building CXX object Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMarvinParser_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MARVINPARSER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o -MF CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o.d -o CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MarvinParse/MarvinDefs.cpp
+[ 79%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o
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+[ 79%] Linking CXX executable testBCUT
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 79%] Built target testBCUT
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+[ 79%] Linking CXX executable testEEM
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 79%] Built target testEEM
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+[ 79%] Linking CXX executable testPBF
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/testRDF.cpp.o -MF CMakeFiles/testRDF.dir/testRDF.cpp.o.d -o CMakeFiles/testRDF.dir/testRDF.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testRDF.cpp
+[ 80%] Linking CXX executable testRDFcustom
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDFcustom.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testRDFcustom.dir/link.d CMakeFiles/testRDFcustom.dir/testRDFcustom.cpp.o -o testRDFcustom  ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 80%] Built target testRDFcustom
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/testMORSE.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/testMORSE.cpp.o -MF CMakeFiles/testMORSE.dir/testMORSE.cpp.o.d -o CMakeFiles/testMORSE.dir/testMORSE.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testMORSE.cpp
+In file included from /usr/include/boost/python/override.hpp:13,
+                 from /usr/include/boost/python/wrapper.hpp:8,
+                 from /usr/include/boost/python/object/value_holder.hpp:15,
+                 from /usr/include/boost/python/object/class_metadata.hpp:14,
+                 from /usr/include/boost/python/class.hpp:23,
+                 from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:9,
+                 from /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:9,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp:11:
+In member function 'boost::python::converter::extract_rvalue<T>::result_type boost::python::converter::extract_rvalue<T>::operator()() const [with T = int]',
+    inlined from 'boost::python::extract<T>::operator result_type() const [with T = int]' at /usr/include/boost/python/extract.hpp:136:23,
+    inlined from 'int {anonymous}::pyobjFunctor::operator()(const RDKit::ROMol&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp:218:20,
+    inlined from 'static R boost::detail::function::function_obj_invoker1<FunctionObj, R, T0>::invoke(boost::detail::function::function_buffer&, T0) [with FunctionObj = {anonymous}::pyobjFunctor; R = int; T0 = const RDKit::ROMol&]' at /usr/include/boost/function/function_template.hpp:137:22:
+/usr/include/boost/python/extract.hpp:185:11: warning: '*(int*)((char*)&<unnamed> + offsetof(boost::python::extract<int>,boost::python::extract<int>::<unnamed>.boost::python::converter::extract_rvalue<int>::m_data.boost::python::converter::rvalue_from_python_data<int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |           );
+      |           ^
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp: In static member function 'static R boost::detail::function::function_obj_invoker1<FunctionObj, R, T0>::invoke(boost::detail::function::function_buffer&, T0) [with FunctionObj = {anonymous}::pyobjFunctor; R = int; T0 = const RDKit::ROMol&]':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp:218:54: note: '<anonymous>' declared here
+  218 |     return python::extract<int>(dp_obj(boost::ref(m)));
+      |                                                      ^
 [ 80%] Linking CXX executable testRDF
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 80%] Built target testRDF
-make  -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/depend
+make  -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build
+make  -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/testWHIM.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/testWHIM.cpp.o -MF CMakeFiles/testWHIM.dir/testWHIM.cpp.o.d -o CMakeFiles/testWHIM.dir/testWHIM.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testWHIM.cpp
-[ 82%] Linking CXX executable testMORSE
+[ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/test3D.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/test3D.cpp.o -MF CMakeFiles/test3D.dir/test3D.cpp.o.d -o CMakeFiles/test3D.dir/test3D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/test3D.cpp
+[ 80%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/Pipeline.cpp
+[ 81%] Linking CXX executable testMORSE
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMORSE.dir/link.txt --verbose=1
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-[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -MF CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o.d -o CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testGETAWAY.cpp
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testRDFcustom.dir/link.d CMakeFiles/testRDFcustom.dir/testRDFcustom.cpp.o -o testRDFcustom  ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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+[ 81%] Built target testMORSE
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/DependInfo.cmake "--color="
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+make  -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -MF CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o.d -o CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp
+[ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/testWHIM.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/testWHIM.cpp.o -MF CMakeFiles/testWHIM.dir/testWHIM.cpp.o.d -o CMakeFiles/testWHIM.dir/testWHIM.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testWHIM.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/c++/14/functional:64,
                  from /usr/include/boost/algorithm/string/detail/classification.hpp:17,
@@ -11603,6 +11577,20 @@
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
+[ 82%] Linking CXX shared library ../../../lib/libRDKitMarvinParser.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/MarvinParser.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MarvinParser.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMarvinParser.so.1 -o ../../../lib/libRDKitMarvinParser.so.1.2024.09.2 CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMarvinParser.so.1.2024.09.2 ../../../lib/libRDKitMarvinParser.so.1 ../../../lib/libRDKitMarvinParser.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 82%] Built target MarvinParser
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -MF CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o.d -o CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testGETAWAY.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]',
     inlined from 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Conformer.h:124:25,
@@ -11651,6 +11639,19 @@
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/test3D.dir/link.d CMakeFiles/test3D.dir/test3D.cpp.o -o test3D  ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 83%] Built target test3D
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -MF CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o.d -o CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp
+[ 83%] Linking CXX executable testWHIM
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testWHIM.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testWHIM.dir/link.d CMakeFiles/testWHIM.dir/testWHIM.cpp.o -o testWHIM  ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 83%] Built target testWHIM
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@@ -11672,32 +11673,32 @@
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/catch_tests.cpp
-[ 84%] Linking CXX executable testAUTOCORR3D
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR3D.dir/link.txt --verbose=1
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+[ 83%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 make  -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
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+[ 83%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
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+[ 84%] Linking CXX executable testAUTOCORR3D
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR3D.dir/link.txt --verbose=1
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+[ 84%] Built target testAUTOCORR3D
+make  -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build
+make  -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -MF CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o.d -o CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/testO3AAlign.cpp
+[ 84%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DO3AAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -MF CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o.d -o CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
 [ 84%] Linking CXX executable testCoulombMat
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCoulombMat.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testCoulombMat.dir/link.d CMakeFiles/testCoulombMat.dir/testCoulombMat.cpp.o -o testCoulombMat  ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -11711,21 +11712,6 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -MF CMakeFiles/moldraw2DTest1.dir/test1.cpp.o.d -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/test1.cpp
-In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
-                 from /usr/include/c++/14/string:51,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:17,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Numerics/Matrix.h:14,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Numerics/SquareMatrix.h:14,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Geometry/Transform3D.h:16,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/AlignMolecules.h:14,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/testO3AAlign.cpp:11:
-/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/testO3AAlign.cpp:643:37:   required from here
-  643 |     oscores.push_back(std::make_pair(rmsd, score));
-      |                       ~~~~~~~~~~~~~~^~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
- 1132 |     make_pair(_T1&& __x, _T2&& __y)
-      |     ^~~~~~~~~
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function 'std::pair<double, double> {anonymous}::{anonymous}::BCUT2D_list(const RDKit::ROMol&, boost::python::list)':
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:444:61: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
   444 |                                       python::list atomprops) {
@@ -11778,19 +11764,6 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp
-[ 84%] Linking CXX executable testO3AAlign
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testO3AAlign.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testO3AAlign.dir/link.d CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -o testO3AAlign  ../../../lib/libRDKitO3AAlign.so.1.2024.09.2 ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitDistGeomHelpers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitDistGeometry.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target testO3AAlign
-make  -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -MF CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o.d -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/rxn_test1.cpp
 In file included from /usr/include/c++/14/map:62,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:19,
                  from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/types.h:28:
@@ -11800,6 +11773,8 @@
       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, RDKit::DrawColour>; _KeyOfValue = std::_Select1st<std::pair<const int, RDKit::DrawColour> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]':
 /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
+[ 84%] Linking CXX shared library ../../../lib/libRDKitO3AAlign.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/O3AAlign.dir/link.txt --verbose=1
 In file included from /usr/include/c++/14/map:63:
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
     inlined from 'void RDKit::assignDefaultPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:69:13:
@@ -11926,6 +11901,18 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/O3AAlign.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitO3AAlign.so.1 -o ../../../lib/libRDKitO3AAlign.so.1.2024.09.2 CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o  ../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitO3AAlign.so.1.2024.09.2 ../../../lib/libRDKitO3AAlign.so.1 ../../../lib/libRDKitO3AAlign.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 84%] Built target O3AAlign
+make  -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -MF CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o.d -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/rxn_test1.cpp
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
     inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
     inlined from 'void test14BWPalette()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/test1.cpp:2975:22:
@@ -11938,19 +11925,6 @@
       |                                         ~~~~~~~~~~~~~~~
 [ 84%] Linking CXX executable moldraw2DRxnTest1
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/moldraw2DRxnTest1.dir/link.d CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1  ../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcairo.so /usr/lib/arm-linux-gnueabihf/libfreetype.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target moldraw2DRxnTest1
-make  -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -MF CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o.d -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
-[ 84%] Linking CXX shared library ../../../lib/libRDKitMarvinParser.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/MarvinParser.dir/link.txt --verbose=1
 In file included from /usr/include/c++/14/map:62,
                  from /usr/include/catch2/internal/catch_reporter_spec_parser.hpp:15,
                  from /usr/include/catch2/catch_config.hpp:17,
@@ -11960,26 +11934,43 @@
 /usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
  2206 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/moldraw2DRxnTest1.dir/link.d CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1  ../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcairo.so /usr/lib/arm-linux-gnueabihf/libfreetype.so
 /usr/include/c++/14/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, RDKit::DrawColour>; _KeyOfValue = std::_Select1st<std::pair<const int, RDKit::DrawColour> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]':
 /usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 84%] Built target moldraw2DRxnTest1
+make  -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
 /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, RDKit::DrawColour>; _KeyOfValue = std::_Select1st<std::pair<const int, RDKit::DrawColour> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]':
 /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
  2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/MarvinParser.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitMarvinParser.so.1 -o ../../../lib/libRDKitMarvinParser.so.1.2024.09.2 CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o  ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMarvinParser.so.1.2024.09.2 ../../../lib/libRDKitMarvinParser.so.1 ../../../lib/libRDKitMarvinParser.so
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target MarvinParser
-make  -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
+make  -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 84%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/freetype2 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -MF CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o.d -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
 /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
 /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
-[ 84%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -MF CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o.d -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/testFMCS_Unit.cpp
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
+    inlined from 'void test3()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/test1.cpp:867:23:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
+    inlined from 'void test3()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/test1.cpp:868:23:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
 In file included from /usr/include/c++/14/map:63:
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
     inlined from 'void RDKit::assignDefaultPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:69:13:
@@ -12458,24 +12449,6 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
-    inlined from 'void test3()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/test1.cpp:867:23:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
-    inlined from 'void test3()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/test1.cpp:868:23:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
 /usr/include/c++/14/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]':
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
@@ -12515,6 +12488,8 @@
  3841 |     find(_InputIterator __first, _InputIterator __last,
       |     ^~~~
 /usr/include/c++/14/bits/stl_algo.h:3841:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::DrawColour*, std::vector<RDKit::DrawColour> >' changed in GCC 7.1
+[ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
     inlined from 'void RDKit::setMonochromeMode(MolDrawOptions&, const DrawColour&, const DrawColour&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2D.h:559:28,
     inlined from 'void RDKit::setMonochromeMode(MolDraw2D&, const DrawColour&, const DrawColour&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2D.h:568:20,
@@ -12537,6 +12512,17 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolDescriptors.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o  ../../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 84%] Built target rdMolDescriptors
+make  -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 84%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -MF CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o.d -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/testFMCS_Unit.cpp
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
     inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
     inlined from 'void CATCH2_INTERNAL_TEST_203()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:4604:20:
@@ -12547,6 +12533,19 @@
       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
+[ 84%] Linking CXX executable moldraw2DTest1
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/moldraw2DTest1.dir/link.d CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1  ../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcairo.so /usr/lib/arm-linux-gnueabihf/libfreetype.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 84%] Built target moldraw2DTest1
+make  -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 84%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -MF CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o.d -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
 In file included from /usr/include/c++/14/map:62,
                  from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:16,
                  from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
@@ -12557,6 +12556,10 @@
 /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
  2454 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp: In function 'CATCH2_INTERNAL_TEST_323()::<lambda(const std::vector<int>&, RDKit::DrawColour, std::map<int, std::vector<RDKit::DrawColour> >&)>':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8178:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::DrawColour*, std::vector<RDKit::DrawColour> >' changed in GCC 7.1
+ 8178 |             find(ex->second.begin(), ex->second.end(), col)) {
+      |             ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 In file included from /usr/include/c++/14/map:63:
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
     inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
@@ -12686,6 +12689,26 @@
   534 |                                         std::tuple<>());
       |                                         ~~~~~~~~~~~~~~~
 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
+    inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
+    inlined from 'void CATCH2_INTERNAL_TEST_27()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:932:22:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
+    inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
+    inlined from 'void CATCH2_INTERNAL_TEST_27()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:948:22:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
     inlined from 'void RDKit::assignAvalonPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:87:13:
 /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
   532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
@@ -13082,30 +13105,44 @@
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp:77:57: note: '<anonymous>' declared here
    77 |     double r = python::extract<double>(tDict.values()[i]);
       |                                                         ^
-[ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolDescriptors.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o  ../../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target rdMolDescriptors
-make  -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -MF CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o.d -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
-[ 84%] Linking CXX executable moldraw2DTest1
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp: In function 'CATCH2_INTERNAL_TEST_323()::<lambda(const std::vector<int>&, RDKit::DrawColour, std::map<int, std::vector<RDKit::DrawColour> >&)>':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8178:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::DrawColour*, std::vector<RDKit::DrawColour> >' changed in GCC 7.1
- 8178 |             find(ex->second.begin(), ex->second.end(), col)) {
-      |             ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 84%] Linking CXX executable testFMCS
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/moldraw2DTest1.dir/link.d CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1  ../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libcairo.so /usr/lib/arm-linux-gnueabihf/libfreetype.so
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp: In function 'void CATCH2_INTERNAL_TEST_323()':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8293:62: note: parameter passing for argument of type 'std::initializer_list<RDKit::DrawColour>' changed in GCC 7.1
+ 8293 |         DrawColour(0.0, 0.0, 1.0), DrawColour(1.0, 0.55, 0.0)};
+      |                                                              ^
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8510:62: note: parameter passing for argument of type 'std::initializer_list<RDKit::DrawColour>' changed in GCC 7.1
+ 8510 |         DrawColour(0.0, 0.0, 1.0), DrawColour(1.0, 0.55, 0.0)};
+      |                                                              ^
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
+    inlined from 'void CATCH2_INTERNAL_TEST_323()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8519:17:
+/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
+  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  514 |                                             std::tuple<const key_type&>(__k),
+      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  515 |                                             std::tuple<>());
+      |                                             ~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp: In function 'void CATCH2_INTERNAL_TEST_323()':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8613:62: note: parameter passing for argument of type 'std::initializer_list<RDKit::DrawColour>' changed in GCC 7.1
+ 8613 |         DrawColour(0.0, 0.0, 1.0), DrawColour(1.0, 0.55, 0.0)};
+      |                                                              ^
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
+    inlined from 'void CATCH2_INTERNAL_TEST_323()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8622:17:
+/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
+  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  514 |                                             std::tuple<const key_type&>(__k),
+      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  515 |                                             std::tuple<>());
+      |                                             ~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp: In function 'void CATCH2_INTERNAL_TEST_323()':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8690:62: note: parameter passing for argument of type 'std::initializer_list<RDKit::DrawColour>' changed in GCC 7.1
+ 8690 |         DrawColour(0.0, 0.0, 1.0), DrawColour(1.0, 0.55, 0.0)};
+      |                                                              ^
+[ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdFMCS.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o  ../../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target moldraw2DTest1
+[ 84%] Built target rdFMCS
 make  -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Test /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake "--color="
@@ -13114,6 +13151,8 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 84%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o -MF CMakeFiles/FMCStest.dir/testFMCS.cpp.o.d -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Test/testFMCS.cpp
+[ 84%] Linking CXX executable testFMCS
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testFMCS.dir/link.d CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS  ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 84%] Built target testFMCS
@@ -13125,26 +13164,22 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 84%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -MF CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o.d -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
-    inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
-    inlined from 'void CATCH2_INTERNAL_TEST_27()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:932:22:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
-    inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
-    inlined from 'void CATCH2_INTERNAL_TEST_27()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:948:22:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
+    inlined from 'void CATCH2_INTERNAL_TEST_305()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:7530:33:
+/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
+  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
+  514 |                                             std::tuple<const key_type&>(__k),
+      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  515 |                                             std::tuple<>());
+      |                                             ~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp: In function 'void CATCH2_INTERNAL_TEST_305()':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:7545:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::DrawColour*, std::vector<RDKit::DrawColour> >' changed in GCC 7.1
+ 7545 |               find(ex->second.begin(), ex->second.end(), colours[i])) {
+      |               ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:7526:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::DrawColour*, std::vector<RDKit::DrawColour> >' changed in GCC 7.1
+ 7526 |               find(ex->second.begin(), ex->second.end(), colours[i])) {
+      |               ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'std::string testChEMBL_Txt(const char*, double, const char*)':
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Test/testFMCS.cpp:550:23: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::vector<boost::shared_ptr<RDKit::ROMol> >::size_type' {aka 'unsigned int'} [-Wformat=]
   550 |   fprintf(fres, "%s;%lu;%.1f;%.4f;%u;%u;%s;", test, mols.size(), th, sec,
@@ -13184,11 +13219,11 @@
       |                             |                                 |
       |                             long unsigned int                 std::vector<boost::shared_ptr<RDKit::ROMol> >::size_type {aka unsigned int}
       |                           %u
-[ 84%] Linking CXX executable testMMPA
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMMPA.dir/link.d CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA  ../../../lib/libRDKitMMPA.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 84%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolDraw2D.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o  ../../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcairo.so /usr/lib/arm-linux-gnueabihf/libfreetype.so /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target testMMPA
+[ 84%] Built target rdMolDraw2D
 make  -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MMPA/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake "--color="
@@ -13197,11 +13232,11 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 84%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -MF CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o.d -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
-[ 84%] Linking CXX executable FMCStest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/FMCStest.dir/link.d CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest  ../../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 84%] Linking CXX executable testMMPA
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMMPA.dir/link.d CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA  ../../../lib/libRDKitMMPA.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target FMCStest
+[ 84%] Built target testMMPA
 make  -f Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/build.make Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/DependInfo.cmake "--color="
@@ -13210,13 +13245,31 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 84%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o -MF CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o.d -o CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/mces_catch.cpp
-[ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
-[ 84%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdFMCS.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o  ../../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
+    inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
+    inlined from 'void CATCH2_INTERNAL_TEST_296()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:7330:20:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
+    inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
+    inlined from 'void CATCH2_INTERNAL_TEST_298()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:7411:20:
+/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
+  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
+      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  533 |                                         std::forward_as_tuple(std::move(__k)),
+      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  534 |                                         std::tuple<>());
+      |                                         ~~~~~~~~~~~~~~~
+[ 84%] Linking CXX executable FMCStest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/FMCStest.dir/link.d CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest  ../../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target rdFMCS
+[ 84%] Built target FMCStest
 make  -f Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/build.make Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/DependInfo.cmake "--color="
@@ -13225,17 +13278,6 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 84%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o -MF CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o.d -o CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/mces_cluster_catch.cpp
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolDraw2D.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o  ../../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcairo.so /usr/lib/arm-linux-gnueabihf/libfreetype.so /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target rdMolDraw2D
-make  -f Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/build.make Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Building CXX object Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o -MF CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o.d -o CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/Wrap/rdRascalMCES.cpp
 In file included from /usr/include/boost/python/override.hpp:13,
                  from /usr/include/boost/python/wrapper.hpp:8,
                  from /usr/include/boost/python/object/value_holder.hpp:15,
@@ -13263,6 +13305,19 @@
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMMPA.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o  ../../../../lib/libRDKitMMPA.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 84%] Built target rdMMPA
+make  -f Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/build.make Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/build.make Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 84%] Building CXX object Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o -MF CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o.d -o CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/Wrap/rdRascalMCES.cpp
+[ 84%] Linking CXX executable testRascalCluster
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRascalCluster.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testRascalCluster.dir/link.d CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o -o testRascalCluster  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitRascalMCES.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 84%] Built target testRascalCluster
 make  -f Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/DependInfo.cmake "--color="
@@ -13271,80 +13326,45 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 84%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o -MF CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/catch_tests.cpp
-[ 84%] Linking CXX executable testRascalCluster
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRascalCluster.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testRascalCluster.dir/link.d CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o -o testRascalCluster  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitRascalMCES.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 85%] Linking CXX executable moldraw2DTestCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTestCatch.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/moldraw2DTestCatch.dir/link.d CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -o moldraw2DTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 ../../../lib/libRDKitCIPLabeler.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcairo.so /usr/lib/arm-linux-gnueabihf/libfreetype.so ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target testRascalCluster
+[ 85%] Built target moldraw2DTestCatch
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/DependInfo.cmake "--color="
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-[ 84%] Building CXX object Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o
+[ 85%] Building CXX object Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o -MF CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o.d -o CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect/deprotectTest.cpp
-[ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdRascalMCES.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRascalMCES.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdRascalMCES.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdRascalMCES.so CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o  ../../../../lib/libRDKitRascalMCES.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 85%] Linking CXX executable testRascalMCES
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRascalMCES.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testRascalMCES.dir/link.d CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o -o testRascalMCES  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitRascalMCES.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target rdRascalMCES
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Building CXX object Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o
+[ 85%] Building CXX object Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDeprotect_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o -MF CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o.d -o CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect/Wrap/rdDeprotect.cpp
-[ 84%] Linking CXX executable testRascalMCES
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRascalMCES.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testRascalMCES.dir/link.d CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o -o testRascalMCES  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitRascalMCES.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 85%] Linking CXX shared module ../../../../rdkit/Chem/rdRascalMCES.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRascalMCES.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdRascalMCES.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdRascalMCES.so CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o  ../../../../lib/libRDKitRascalMCES.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Built target testRascalMCES
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 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 84%] Building CXX object Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o
+[ 85%] Building CXX object Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGeneralizedSubstruct_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERALIZEDSUBSTRUCT_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o -MF CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o.d -o CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/GeneralizedSubstruct/XQMol.cpp
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp: In function 'void CATCH2_INTERNAL_TEST_323()':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8293:62: note: parameter passing for argument of type 'std::initializer_list<RDKit::DrawColour>' changed in GCC 7.1
- 8293 |         DrawColour(0.0, 0.0, 1.0), DrawColour(1.0, 0.55, 0.0)};
-      |                                                              ^
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8510:62: note: parameter passing for argument of type 'std::initializer_list<RDKit::DrawColour>' changed in GCC 7.1
- 8510 |         DrawColour(0.0, 0.0, 1.0), DrawColour(1.0, 0.55, 0.0)};
-      |                                                              ^
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
-    inlined from 'void CATCH2_INTERNAL_TEST_323()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8519:17:
-/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
-  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  514 |                                             std::tuple<const key_type&>(__k),
-      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  515 |                                             std::tuple<>());
-      |                                             ~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp: In function 'void CATCH2_INTERNAL_TEST_323()':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8613:62: note: parameter passing for argument of type 'std::initializer_list<RDKit::DrawColour>' changed in GCC 7.1
- 8613 |         DrawColour(0.0, 0.0, 1.0), DrawColour(1.0, 0.55, 0.0)};
-      |                                                              ^
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
-    inlined from 'void CATCH2_INTERNAL_TEST_323()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8622:17:
-/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
-  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  514 |                                             std::tuple<const key_type&>(__k),
-      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  515 |                                             std::tuple<>());
-      |                                             ~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp: In function 'void CATCH2_INTERNAL_TEST_323()':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:8690:62: note: parameter passing for argument of type 'std::initializer_list<RDKit::DrawColour>' changed in GCC 7.1
- 8690 |         DrawColour(0.0, 0.0, 1.0), DrawColour(1.0, 0.55, 0.0)};
-      |                                                              ^
-[ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o -MF CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/CIPMol.cpp
 [ 85%] Linking CXX executable deprotectTest
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect && /usr/bin/cmake -E cmake_link_script CMakeFiles/deprotectTest.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/deprotectTest.dir/link.d CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o -o deprotectTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitDeprotect.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -13360,24 +13380,8 @@
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp
 [ 85%] Building CXX object Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDeprotect_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -MF CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o.d -o CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect/Wrap/DeprotectWrap.cpp
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
-    inlined from 'void CATCH2_INTERNAL_TEST_305()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:7530:33:
-/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
-  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  514 |                                             std::tuple<const key_type&>(__k),
-      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  515 |                                             std::tuple<>());
-      |                                             ~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp: In function 'void CATCH2_INTERNAL_TEST_305()':
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:7545:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::DrawColour*, std::vector<RDKit::DrawColour> >' changed in GCC 7.1
- 7545 |               find(ex->second.begin(), ex->second.end(), colours[i])) {
-      |               ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:7526:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::DrawColour*, std::vector<RDKit::DrawColour> >' changed in GCC 7.1
- 7526 |               find(ex->second.begin(), ex->second.end(), colours[i])) {
-      |               ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o -MF CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/CIPLabeler.cpp
+[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o -MF CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/CIPMol.cpp
 In file included from /usr/include/c++/14/memory:69,
                  from /usr/include/boost/iostreams/stream_buffer.hpp:15,
                  from /usr/include/boost/iostreams/stream.hpp:21,
@@ -13410,69 +13414,104 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 85%] Building CXX object Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o
+[ 86%] Building CXX object Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGeneralizedSubstruct_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERALIZEDSUBSTRUCT_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o -MF CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o.d -o CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/GeneralizedSubstruct/TextIO.cpp
-[ 85%] Linking CXX shared module ../../../../rdkit/Chem/rdDeprotect.so
+[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o -MF CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/CIPLabeler.cpp
+[ 86%] Linking CXX shared module ../../../../rdkit/Chem/rdDeprotect.so
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-[ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o -MF CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Mancude.cpp
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 85%] Built target rdDeprotect
-[ 85%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o
+[ 86%] Built target rdDeprotect
+make  -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o -MF CMakeFiles/rdchem.dir/rdchem.cpp.o.d -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/rdchem.cpp
+[ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o
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-[ 85%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupData.cpp
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
-    inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
-    inlined from 'void CATCH2_INTERNAL_TEST_296()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:7330:20:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
-[ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o
+[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o -MF CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Mancude.cpp
+[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o -MF CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Digraph.cpp
-In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = RDKit::DrawColour; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDKit::DrawColour> >]',
-    inlined from 'void RDKit::assignBWPalette(ColourPalette&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h:143:13,
-    inlined from 'void CATCH2_INTERNAL_TEST_298()' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/catch_tests.cpp:7411:20:
-/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDKit::DrawColour>, std::_Select1st<std::pair<const int, RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<const int, RDKit::DrawColour> > >::const_iterator' changed in GCC 7.1
-  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
-      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  533 |                                         std::forward_as_tuple(std::move(__k)),
-      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  534 |                                         std::tuple<>());
-      |                                         ~~~~~~~~~~~~~~~
-[ 85%] Linking CXX shared library ../../../lib/libRDKitGeneralizedSubstruct.so
+[ 86%] Linking CXX shared library ../../../lib/libRDKitGeneralizedSubstruct.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/GeneralizedSubstruct.dir/link.txt --verbose=1
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/GeneralizedSubstruct.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitGeneralizedSubstruct.so.1 -o ../../../lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o  ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 ../../../lib/libRDKitGeneralizedSubstruct.so.1 ../../../lib/libRDKitGeneralizedSubstruct.so
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 85%] Built target GeneralizedSubstruct
-[ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Node.cpp.o
+[ 86%] Built target GeneralizedSubstruct
+make  -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -MF CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o.d -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/rdmolfiles.cpp
+[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Node.cpp.o
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-[ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Edge.cpp.o
+[ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupData.cpp
+[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Edge.cpp.o
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-[ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Sort.cpp.o
+[ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o -MF CMakeFiles/rdchem.dir/Table.cpp.o.d -o CMakeFiles/rdchem.dir/Table.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Table.cpp
+[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Sort.cpp.o
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-[ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Configuration.cpp.o
+[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Configuration.cpp.o
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-[ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o -MF CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp
-[ 85%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupUtils.cpp
-[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o
+In file included from /usr/include/c++/14/vector:65,
+                 from /usr/include/c++/14/functional:64,
+                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
+                 from /usr/include/boost/function/detail/prologue.hpp:15,
+                 from /usr/include/boost/function/function_template.hpp:13,
+                 from /usr/include/boost/function/detail/maybe_include.hpp:15,
+                 from /usr/include/boost/function/function0.hpp:11,
+                 from /usr/include/boost/python/errors.hpp:13,
+                 from /usr/include/boost/python/handle.hpp:11,
+                 from /usr/include/boost/python/args_fwd.hpp:10,
+                 from /usr/include/boost/python/args.hpp:10,
+                 from /usr/include/boost/python.hpp:11,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDBoost/python.h:3,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Table.cpp:13:
+/usr/include/c++/14/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::atomicData*, vector<RDKit::atomicData> >; _ForwardIterator = RDKit::atomicData*]':
+/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::atomicData*, std::vector<RDKit::atomicData> >' changed in GCC 7.1
+  113 |     __do_uninit_copy(_InputIterator __first, _InputIterator __last,
+      |     ^~~~~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::atomicData*, std::vector<RDKit::atomicData> >' changed in GCC 7.1
+In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::atomicData*, std::vector<RDKit::atomicData> >; _ForwardIterator = RDKit::atomicData*; bool _TrivialValueTypes = false]',
+    inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::atomicData*, vector<RDKit::atomicData> >; _ForwardIterator = RDKit::atomicData*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
+    inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::atomicData*, vector<RDKit::atomicData> >; _ForwardIterator = RDKit::atomicData*; _Tp = RDKit::atomicData]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
+    inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = RDKit::atomicData; _Alloc = std::allocator<RDKit::atomicData>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
+    inlined from 'RDKit::PeriodicTable::PeriodicTable(const RDKit::PeriodicTable&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PeriodicTable.h:32:29,
+    inlined from 'boost::python::objects::value_holder<Value>::value_holder(PyObject*, A0) [with A0 = boost::reference_wrapper<const RDKit::PeriodicTable>; Value = RDKit::PeriodicTable]' at /usr/include/boost/python/object/value_holder.hpp:131:11,
+    inlined from 'static Holder* boost::python::objects::make_instance<T, Holder>::construct(void*, PyObject*, boost::reference_wrapper<const T>) [with T = RDKit::PeriodicTable; Holder = boost::python::objects::value_holder<RDKit::PeriodicTable>]' at /usr/include/boost/python/object/make_instance.hpp:78:16:
+/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::atomicData*, std::vector<RDKit::atomicData> >' changed in GCC 7.1
+  137 |         { return std::__do_uninit_copy(__first, __last, __result); }
+      |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o -MF CMakeFiles/rdchem.dir/Atom.cpp.o.d -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Atom.cpp
+[ 87%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o -MF CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp
-[ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupCore.cpp
-[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/AtropisomerBond.cpp.o
+[ 87%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupUtils.cpp
+[ 87%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/AtropisomerBond.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/AtropisomerBond.cpp.o -MF CMakeFiles/testCIPLabeler.dir/configs/AtropisomerBond.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/configs/AtropisomerBond.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/configs/AtropisomerBond.cpp
-[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o
+[ 87%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupCore.cpp
+[ 87%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp
-[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o
+[ 87%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp
+[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp
+[ 88%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp
 In file included from /usr/include/c++/14/vector:72,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/SmartsWrite.h:15,
                  from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupCore.h:14,
@@ -13481,12 +13520,8 @@
 /usr/include/c++/14/bits/vector.tcc:181:5: note: parameter passing for argument of type 'std::vector<RDKit::Dict::Pair>::iterator' changed in GCC 7.1
   181 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
-[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp
-[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o
+[ 88%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule3.cpp
-[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp
 /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
@@ -13497,24 +13532,14 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp
 In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = RDKit::Dict::Pair; _Alloc = std::allocator<RDKit::Dict::Pair>]',
     inlined from 'void RDKit::Dict::clearVal(const std::string&)' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:320:20,
     inlined from 'void RDKit::RDProps::clearProp(const std::string&) const' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDProps.h:145:21:
 /usr/include/c++/14/bits/stl_vector.h:1537:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
  1537 |       { return _M_erase(begin() + (__position - cbegin())); }
       |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-make  -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o -MF CMakeFiles/rdchem.dir/rdchem.cpp.o.d -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/rdchem.cpp
-[ 87%] Linking CXX executable moldraw2DTestCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTestCatch.dir/link.txt --verbose=1
+[ 88%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp
 In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = RDKit::Dict::Pair; _Alloc = std::allocator<RDKit::Dict::Pair>]',
     inlined from 'void RDKit::Dict::clearVal(const std::string&)' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:320:20,
     inlined from 'void RDKit::RDProps::clearComputedProps() const' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/RDProps.h:154:25,
@@ -13535,89 +13560,241 @@
 /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
  1037 |           _M_fill_insert(end(), __new_size - size(), __x);
       |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/moldraw2DTestCatch.dir/link.d CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -o moldraw2DTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolDraw2D.so.1.2024.09.2 ../../../lib/libRDKitCIPLabeler.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcairo.so /usr/lib/arm-linux-gnueabihf/libfreetype.so ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 87%] Built target moldraw2DTestCatch
-[ 87%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o
+[ 88%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:22:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o -MF CMakeFiles/rdchem.dir/Bond.cpp.o.d -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Bond.cpp
+[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MaeMolSupplier.cpp
+[ 88%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.cpp
+[ 88%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp
-[ 87%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o
+[ 88%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule5.cpp
-[ 88%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o
+[ 89%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp
-[ 88%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.cpp
-[ 88%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o
+[ 89%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/Rule6.cpp
-[ 88%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o
+[ 89%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules/SequenceRule.cpp
-[ 89%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MaeMolSupplier.cpp:23:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+[ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MaeWriter.cpp
+[ 90%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupScore.cpp
-[ 89%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupFingerprintScore.cpp
-[ 89%] Linking CXX executable testCIPLabeler
+[ 90%] Linking CXX executable testCIPLabeler
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCIPLabeler.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 89%] Built target testCIPLabeler
-[ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o -MF CMakeFiles/rdchem.dir/Table.cpp.o.d -o CMakeFiles/rdchem.dir/Table.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Table.cpp
-[ 89%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupGa.cpp
-[ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o -MF CMakeFiles/rdchem.dir/Atom.cpp.o.d -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Atom.cpp
-[ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o -MF CMakeFiles/rdchem.dir/Bond.cpp.o.d -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Bond.cpp
-[ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o
+[ 90%] Built target testCIPLabeler
+[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SDMolSupplier.cpp
+[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o -MF CMakeFiles/rdchem.dir/Mol.cpp.o.d -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Mol.cpp
-In file included from /usr/include/c++/14/vector:65,
-                 from /usr/include/c++/14/functional:64,
-                 from /usr/include/boost/config/no_tr1/functional.hpp:21,
-                 from /usr/include/boost/function/detail/prologue.hpp:15,
-                 from /usr/include/boost/function/function_template.hpp:13,
-                 from /usr/include/boost/function/detail/maybe_include.hpp:15,
-                 from /usr/include/boost/function/function0.hpp:11,
-                 from /usr/include/boost/python/errors.hpp:13,
-                 from /usr/include/boost/python/handle.hpp:11,
-                 from /usr/include/boost/python/args_fwd.hpp:10,
-                 from /usr/include/boost/python/args.hpp:10,
-                 from /usr/include/boost/python.hpp:11,
-                 from /build/reproducible-path/rdkit-202409.2/Code/RDBoost/python.h:3,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Table.cpp:13:
-/usr/include/c++/14/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::atomicData*, vector<RDKit::atomicData> >; _ForwardIterator = RDKit::atomicData*]':
-/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::atomicData*, std::vector<RDKit::atomicData> >' changed in GCC 7.1
-  113 |     __do_uninit_copy(_InputIterator __first, _InputIterator __last,
-      |     ^~~~~~~~~~~~~~~~
-/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::atomicData*, std::vector<RDKit::atomicData> >' changed in GCC 7.1
-In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::atomicData*, std::vector<RDKit::atomicData> >; _ForwardIterator = RDKit::atomicData*; bool _TrivialValueTypes = false]',
-    inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::atomicData*, vector<RDKit::atomicData> >; _ForwardIterator = RDKit::atomicData*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
-    inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::atomicData*, vector<RDKit::atomicData> >; _ForwardIterator = RDKit::atomicData*; _Tp = RDKit::atomicData]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
-    inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = RDKit::atomicData; _Alloc = std::allocator<RDKit::atomicData>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
-    inlined from 'RDKit::PeriodicTable::PeriodicTable(const RDKit::PeriodicTable&)' at /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PeriodicTable.h:32:29,
-    inlined from 'boost::python::objects::value_holder<Value>::value_holder(PyObject*, A0) [with A0 = boost::reference_wrapper<const RDKit::PeriodicTable>; Value = RDKit::PeriodicTable]' at /usr/include/boost/python/object/value_holder.hpp:131:11,
-    inlined from 'static Holder* boost::python::objects::make_instance<T, Holder>::construct(void*, PyObject*, boost::reference_wrapper<const T>) [with T = RDKit::PeriodicTable; Holder = boost::python::objects::value_holder<RDKit::PeriodicTable>]' at /usr/include/boost/python/object/make_instance.hpp:78:16:
-/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::atomicData*, std::vector<RDKit::atomicData> >' changed in GCC 7.1
-  137 |         { return std::__do_uninit_copy(__first, __last, __result); }
-      |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o
+[ 90%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupFingerprintScore.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MaeWriter.cpp:21:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/TDTMolSupplier.cpp
+[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SmilesMolSupplier.cpp
+[ 90%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/RGroupGa.cpp
+[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SmilesWriter.cpp
+[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SDWriter.cpp
+[ 90%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/RGroupDecomposition.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o  ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitga.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 90%] Built target RGroupDecomposition
+make  -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ScaffoldNetwork /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 90%] Building CXX object Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -MF CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o.d -o CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ScaffoldNetwork/catch_tests.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SmilesWriter.cpp:20:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                                                        ^
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SDWriter.cpp:21:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                                                        ^
+[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/TDTWriter.cpp
+[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/PDBWriter.cpp
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/PDBWriter.cpp:20:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/TDTWriter.cpp:21:
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
+  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
+  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
+      |                                                          ^
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
+  420 |       result = off_type(bp::extract<off_type>(py_tell()));
+      |                                                        ^
+[ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MultithreadedSmilesMolSupplier.cpp
+[ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MultithreadedSDMolSupplier.cpp
+[ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o -MF CMakeFiles/rdchem.dir/Conformer.cpp.o.d -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Conformer.cpp
-[ 90%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so
+[ 92%] Linking CXX executable testScaffoldNetwork
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_link_script CMakeFiles/testScaffoldNetwork.dir/link.txt --verbose=1
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 90%] Built target RGroupDecomposition
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+make  -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ScaffoldNetwork/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/DependInfo.cmake "--color="
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+[ 93%] Building CXX object Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdScaffoldNetwork_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -MF CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o.d -o CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ScaffoldNetwork/Wrap/rdScaffoldNetwork.cpp
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Conformer.cpp: In function 'void RDKit::SetPos(Conformer*, const boost::python::numpy::ndarray&)':
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Conformer.cpp:72:22: warning: comparison of integer expressions of different signedness: 'Py_intptr_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
    72 |   if (array.shape(0) != conf->getNumAtoms()) {
       |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
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+[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o -MF CMakeFiles/rdchem.dir/RingInfo.cpp.o.d -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/RingInfo.cpp
+[ 93%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1
 In file included from /usr/include/c++/14/vector:72,
                  from /usr/include/c++/14/functional:64,
                  from /usr/include/boost/config/no_tr1/functional.hpp:21,
@@ -13636,6 +13813,17 @@
 /usr/include/c++/14/bits/vector.tcc:181:5: note: parameter passing for argument of type 'std::vector<RDKit::Dict::Pair>::iterator' changed in GCC 7.1
   181 |     vector<_Tp, _Alloc>::
       |     ^~~~~~~~~~~~~~~~~~~
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdmolfiles.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o  ../../../lib/libRDKitMarvinParser.so.1.2024.09.2 ../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 -ldl /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 93%] Building CXX object Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o -MF CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/GeneralizedSubstruct/catch_tests.cpp
 /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
 /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator' changed in GCC 7.1
   700 |     vector<_Tp, _Alloc>::
@@ -13674,43 +13862,54 @@
 /usr/include/c++/14/bits/stl_vector.h:1537:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
  1537 |       { return _M_erase(begin() + (__position - cbegin())); }
       |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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-[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o
+[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o -MF CMakeFiles/rdchem.dir/EditableMol.cpp.o.d -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/EditableMol.cpp
-[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o
+[ 93%] Linking CXX executable generalizedSubstructCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/generalizedSubstructCatch.dir/link.txt --verbose=1
+[ 93%] Linking CXX shared module ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdScaffoldNetwork.dir/link.txt --verbose=1
+[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -MF CMakeFiles/rdchem.dir/MonomerInfo.cpp.o.d -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MonomerInfo.cpp
-[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -MF CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o.d -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp
-[ 90%] Linking CXX executable testScaffoldNetwork
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_link_script CMakeFiles/testScaffoldNetwork.dir/link.txt --verbose=1
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+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/generalizedSubstructCatch.dir/link.d CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o -o generalizedSubstructCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
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+[ 93%] Built target generalizedSubstructCatch
+make  -f Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/build.make Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/depend
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/GeneralizedSubstruct/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/DependInfo.cmake "--color="
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 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/build.make Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/build
+[ 93%] Built target rdScaffoldNetwork
+make  -f Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/build.make Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 91%] Building CXX object Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdScaffoldNetwork_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -MF CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o.d -o CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ScaffoldNetwork/Wrap/rdScaffoldNetwork.cpp
-[ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolProcessing /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/DependInfo.cmake "--color="
+[ 94%] Building CXX object Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeneralizedSubstruct_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o -MF CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o.d -o CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/GeneralizedSubstruct/Wrap/rdGeneralizedSubstruct.cpp
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/build.make Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 94%] Building CXX object Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o -MF CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o.d -o CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolProcessing/processing_tests.cpp
+[ 94%] Linking CXX executable testMolProcessing
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolProcessing.dir/link.txt --verbose=1
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 94%] Built target testMolProcessing
+[ 94%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -MF CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o.d -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp
+[ 94%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o -MF CMakeFiles/rdchem.dir/MolBundle.cpp.o.d -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MolBundle.cpp
-[ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o
+[ 94%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o -MF CMakeFiles/rdchem.dir/StereoGroup.cpp.o.d -o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/StereoGroup.cpp
-[ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o
+[ 94%] Linking CXX shared module ../../../../rdkit/Chem/rdGeneralizedSubstruct.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeneralizedSubstruct.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdGeneralizedSubstruct.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdGeneralizedSubstruct.so CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o  ../../../../lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 94%] Built target rdGeneralizedSubstruct
+[ 94%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -MF CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o.d -o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SubstanceGroup.cpp
-[ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp
 In file included from /usr/include/boost/python/override.hpp:13,
                  from /usr/include/boost/python/wrapper.hpp:8,
                  from /usr/include/boost/python/object/value_holder.hpp:15,
@@ -13731,48 +13930,28 @@
 /usr/include/boost/python/stl_iterator.hpp:48:16: note: '<anonymous>' declared here
    48 |         return extract<ValueT>(this->impl_.current().get())();
       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o
+[ 94%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o -MF CMakeFiles/rdchem.dir/Chirality.cpp.o.d -o CMakeFiles/rdchem.dir/Chirality.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/Chirality.cpp
-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:22:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                                                        ^
-[ 92%] Linking CXX shared module ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdScaffoldNetwork.dir/link.txt --verbose=1
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdScaffoldNetwork.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o  ../../../../lib/libRDKitScaffoldNetwork.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make  -f Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/build.make Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolProcessing/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/DependInfo.cmake "--color="
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+[ 94%] Building CXX object Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolProcessing_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o -MF CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o.d -o CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolProcessing/Wrap/rdMolProcessing.cpp
+make  -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
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+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake "--color="
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+make  -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 92%] Building CXX object Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o -MF CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/GeneralizedSubstruct/catch_tests.cpp
-[ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MaeMolSupplier.cpp
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-[ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o
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+[ 94%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
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+[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o -MF CMakeFiles/rdkit.dir/bfp_op.c.o.d -o CMakeFiles/rdkit.dir/bfp_op.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/bfp_op.c
+[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o -MF CMakeFiles/rdkit.dir/cache.c.o.d -o CMakeFiles/rdkit.dir/cache.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/cache.c
 In file included from /usr/include/boost/python/override.hpp:13,
                  from /usr/include/boost/python/wrapper.hpp:8,
                  from /usr/include/boost/python/object/value_holder.hpp:15,
@@ -13790,27 +13969,33 @@
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SubstanceGroup.cpp:65:72: note: '<anonymous>' declared here
    65 |   unsigned int sz = python::extract<unsigned int>(pts.attr("__len__")());
       |                                                                        ^
-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MaeWriter.cpp:21:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
+[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o -MF CMakeFiles/rdkit.dir/guc.c.o.d -o CMakeFiles/rdkit.dir/guc.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/guc.c
+[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o -MF CMakeFiles/rdkit.dir/low_gist.c.o.d -o CMakeFiles/rdkit.dir/low_gist.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/low_gist.c
+[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o -MF CMakeFiles/rdkit.dir/mol_op.c.o.d -o CMakeFiles/rdkit.dir/mol_op.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/mol_op.c
+[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o -MF CMakeFiles/rdkit.dir/rdkit_gist.c.o.d -o CMakeFiles/rdkit.dir/rdkit_gist.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/rdkit_gist.c
+[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o -MF CMakeFiles/rdkit.dir/bfp_gist.c.o.d -o CMakeFiles/rdkit.dir/bfp_gist.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/bfp_gist.c
+[ 95%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o -MF CMakeFiles/rdkit.dir/bfp_gin.c.o.d -o CMakeFiles/rdkit.dir/bfp_gin.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/bfp_gin.c
+[ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdMolProcessing.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolProcessing.dir/link.txt --verbose=1
+[ 95%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o -MF CMakeFiles/rdkit.dir/bitstring.c.o.d -o CMakeFiles/rdkit.dir/bitstring.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/bitstring.c
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolProcessing.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolProcessing.so CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o  ../../../../lib/libRDKitMolProcessing.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDStreams.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 95%] Built target rdMolProcessing
+make  -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 95%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -MF CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o.d -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse/cxsmiles_test.cpp
 In file included from /usr/include/c++/14/vector:65,
                  from /usr/include/c++/14/functional:64,
                  from /usr/include/boost/config/no_tr1/functional.hpp:21,
@@ -13836,6 +14021,18 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 95%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o -MF CMakeFiles/rdkit.dir/rdkit_io.c.o.d -o CMakeFiles/rdkit.dir/rdkit_io.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/rdkit_io.c
+/build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)':
+/build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/adapter.cpp:1617:38: warning: unused parameter 'data' [-Wunused-parameter]
+ 1617 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
+      |                               ~~~~~~~^~~~
+/build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/adapter.cpp:1617:49: warning: unused parameter 'isQuery' [-Wunused-parameter]
+ 1617 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
+      |                                            ~~~~~^~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/adapter.cpp:1618:44: warning: unused parameter 'bitFlags' [-Wunused-parameter]
+ 1618 |                               unsigned int bitFlags) {
+      |                               ~~~~~~~~~~~~~^~~~~~~~
 In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*; bool _TrivialValueTypes = false]',
     inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
     inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, vector<RDKit::Dict::Pair> >; _ForwardIterator = RDKit::Dict::Pair*; _Tp = RDKit::Dict::Pair]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
@@ -13847,6 +14044,8 @@
 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
   137 |         { return std::__do_uninit_copy(__first, __last, __result); }
       |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 95%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o -MF CMakeFiles/rdkit.dir/rxn_op.c.o.d -o CMakeFiles/rdkit.dir/rxn_op.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/rxn_op.c
 In member function 'boost::python::converter::extract_rvalue<T>::result_type boost::python::converter::extract_rvalue<T>::operator()() const [with T = unsigned int]',
     inlined from 'ValueT boost::python::stl_input_iterator<ValueT>::dereference() const [with ValueT = unsigned int]' at /usr/include/boost/python/stl_iterator.hpp:48:60,
     inlined from 'static typename Facade::reference boost::iterators::iterator_core_access::dereference(const Facade&) [with Facade = boost::python::stl_input_iterator<unsigned int>]' at /usr/include/boost/iterator/iterator_facade.hpp:631:31,
@@ -13861,6 +14060,16 @@
 /usr/include/boost/python/stl_iterator.hpp:48:16: note: '<anonymous>' declared here
    48 |         return extract<ValueT>(this->impl_.current().get())();
       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 95%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o -MF CMakeFiles/rdkit.dir/sfp_op.c.o.d -o CMakeFiles/rdkit.dir/sfp_op.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/sfp_op.c
+make  -f Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/build.make Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MarvinParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/build.make Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 95%] Building CXX object Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/testMrvToMol.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/testMrvToMol.cpp.o -MF CMakeFiles/testMrvToMol.dir/testMrvToMol.cpp.o.d -o CMakeFiles/testMrvToMol.dir/testMrvToMol.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MarvinParse/testMrvToMol.cpp
 In member function 'boost::python::converter::extract_rvalue<T>::result_type boost::python::converter::extract_rvalue<T>::operator()() const [with T = unsigned int]',
     inlined from 'ValueT boost::python::stl_input_iterator<ValueT>::dereference() const [with ValueT = unsigned int]' at /usr/include/boost/python/stl_iterator.hpp:48:60,
     inlined from 'static typename Facade::reference boost::iterators::iterator_core_access::dereference(const Facade&) [with Facade = boost::python::stl_input_iterator<unsigned int>]' at /usr/include/boost/iterator/iterator_facade.hpp:631:31,
@@ -13890,234 +14099,11 @@
 /usr/include/boost/python/stl_iterator.hpp:48:16: note: '<anonymous>' declared here
    48 |         return extract<ValueT>(this->impl_.current().get())();
       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/TDTMolSupplier.cpp
-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MaeMolSupplier.cpp:23:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-[ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o
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-[ 92%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o -MF CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o.d -o CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolProcessing/processing_tests.cpp
-[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SDWriter.cpp
-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SmilesWriter.cpp:20:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                                                        ^
-[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/TDTWriter.cpp
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-[ 93%] Linking CXX executable testMolProcessing
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 93%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o -MF CMakeFiles/rdkit.dir/adapter.cpp.o.d -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/adapter.cpp
-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/TDTWriter.cpp:21:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/SDWriter.cpp:21:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                                                        ^
-In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/PDBWriter.cpp:20:
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:16: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
-  420 |       result = off_type(bp::extract<off_type>(py_tell()));
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: note: '<anonymous>' declared here
-  185 |       off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                        ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-/build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:155:58: note: '<anonymous>' declared here
-  155 |         off_type py_pos = bp::extract<off_type>(py_tell());
-      |                                                          ^
-[ 94%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MultithreadedSmilesMolSupplier.cpp
-/build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)':
-/build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/adapter.cpp:1617:38: warning: unused parameter 'data' [-Wunused-parameter]
- 1617 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
-      |                               ~~~~~~~^~~~
-/build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/adapter.cpp:1617:49: warning: unused parameter 'isQuery' [-Wunused-parameter]
- 1617 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
-      |                                            ~~~~~^~~~~~~
-/build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/adapter.cpp:1618:44: warning: unused parameter 'bitFlags' [-Wunused-parameter]
- 1618 |                               unsigned int bitFlags) {
-      |                               ~~~~~~~~~~~~~^~~~~~~~
-[ 94%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/MultithreadedSDMolSupplier.cpp
-[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o -MF CMakeFiles/rdkit.dir/bfp_op.c.o.d -o CMakeFiles/rdkit.dir/bfp_op.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/bfp_op.c
-[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o -MF CMakeFiles/rdkit.dir/cache.c.o.d -o CMakeFiles/rdkit.dir/cache.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/cache.c
-[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o -MF CMakeFiles/rdkit.dir/guc.c.o.d -o CMakeFiles/rdkit.dir/guc.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/guc.c
-[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o -MF CMakeFiles/rdkit.dir/low_gist.c.o.d -o CMakeFiles/rdkit.dir/low_gist.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/low_gist.c
-[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o -MF CMakeFiles/rdkit.dir/mol_op.c.o.d -o CMakeFiles/rdkit.dir/mol_op.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/mol_op.c
-[ 94%] Linking CXX shared module ../../../../rdkit/Chem/rdMolProcessing.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolProcessing.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolProcessing.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolProcessing.so CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o  ../../../../lib/libRDKitMolProcessing.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitRDStreams.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 94%] Built target rdMolProcessing
-[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o -MF CMakeFiles/rdkit.dir/rdkit_gist.c.o.d -o CMakeFiles/rdkit.dir/rdkit_gist.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/rdkit_gist.c
-[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
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-[ 95%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o -MF CMakeFiles/rdkit.dir/bfp_gin.c.o.d -o CMakeFiles/rdkit.dir/bfp_gin.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/bfp_gin.c
-[ 95%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2024.09.2\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/build/reproducible-path/rdkit-202409.2/Code -I/usr/include/postgresql -I/usr/include/postgresql/17/server -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o -MF CMakeFiles/rdkit.dir/bitstring.c.o.d -o CMakeFiles/rdkit.dir/bitstring.c.o -c /build/reproducible-path/rdkit-202409.2/Code/PgSQL/rdkit/bitstring.c
-[ 95%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
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+[ 95%] Built target rdchem
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 [ 95%] Linking CXX executable testMrvToMol
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMrvToMol.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testMrvToMol.dir/link.d CMakeFiles/testMrvToMol.dir/testMrvToMol.cpp.o -o testMrvToMol  ../../../lib/libRDKitMarvinParser.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
@@ -14162,32 +14141,60 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 95%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/TautomerQuery/catch_tests.cpp
-[ 95%] Linking CXX executable testGenericGroups
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGenericGroups.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testGenericGroups.dir/link.d CMakeFiles/testGenericGroups.dir/generic_tests.cpp.o -o testGenericGroups  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMarvinParser.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 96%] Linking CXX executable cxsmilesTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/cxsmilesTest.dir/link.d CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMarvinParser.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 95%] Built target testGenericGroups
+[ 96%] Built target cxsmilesTest
 make  -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/TautomerQuery/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 make  -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 95%] Building CXX object Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o
+[ 96%] Building CXX object Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdTautomerQuery_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -MF CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o.d -o CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/TautomerQuery/Wrap/rdTautomerQuery.cpp
-[ 96%] Linking CXX executable cxsmilesTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/cxsmilesTest.dir/link.d CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMarvinParser.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 96%] Linking CXX executable testGenericGroups
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGenericGroups.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testGenericGroups.dir/link.d CMakeFiles/testGenericGroups.dir/generic_tests.cpp.o -o testGenericGroups  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMarvinParser.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 96%] Built target cxsmilesTest
-make  -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
+[ 96%] Built target testGenericGroups
+make  -f Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
+make  -f Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 96%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -MF CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
+[ 96%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -MF CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o.d -o CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/testO3AAlign.cpp
+[ 97%] Linking CXX executable tautomerQueryTestCatch
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_link_script CMakeFiles/tautomerQueryTestCatch.dir/link.txt --verbose=1
+In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
+                 from /usr/include/c++/14/string:51,
+                 from /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Invariant.h:17,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Numerics/Matrix.h:14,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Numerics/SquareMatrix.h:14,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Geometry/Transform3D.h:16,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/AlignMolecules.h:14,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/testO3AAlign.cpp:11:
+/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/testO3AAlign.cpp:643:37:   required from here
+  643 |     oscores.push_back(std::make_pair(rmsd, score));
+      |                       ~~~~~~~~~~~~~~^~~~~~~~~~~~~
+/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+ 1132 |     make_pair(_T1&& __x, _T2&& __y)
+      |     ^~~~~~~~~
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/tautomerQueryTestCatch.dir/link.d CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -o tautomerQueryTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 97%] Built target tautomerQueryTestCatch
+make  -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 97%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -MF CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o.d -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
 In file included from /usr/include/boost/shared_ptr.hpp:17,
                  from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                  from /usr/include/boost/python/converter/arg_to_python.hpp:15,
@@ -14281,35 +14288,6 @@
 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp:48:28: note: '<anonymous>' declared here
    48 |   size_t num_bbs = python::extract<unsigned int>(bbs.attr("__len__")());
       |                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/vector:72,
-                 from /build/reproducible-path/rdkit-202409.2/Code/Geometry/point.h:16,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolPickler.h:14,
-                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:34:
-/usr/include/c++/14/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = RDKit::Dict::Pair; _Alloc = std::allocator<RDKit::Dict::Pair>]':
-/usr/include/c++/14/bits/vector.tcc:181:5: note: parameter passing for argument of type 'std::vector<RDKit::Dict::Pair>::iterator' changed in GCC 7.1
-  181 |     vector<_Tp, _Alloc>::
-      |     ^~~~~~~~~~~~~~~~~~~
-[ 97%] Linking CXX executable tautomerQueryTestCatch
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_link_script CMakeFiles/tautomerQueryTestCatch.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/tautomerQueryTestCatch.dir/link.d CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -o tautomerQueryTestCatch  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 97%] Built target tautomerQueryTestCatch
-make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 97%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -MF CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o.d -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
-make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/depend
-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/DependInfo.cmake "--color="
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-make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 97%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o -MF CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o.d -o CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/testRGroupInternals.cpp
 In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/TautomerQuery/Wrap/rdTautomerQuery.cpp:15:
 /build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
 /build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
@@ -14331,32 +14309,84 @@
 /build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:420:56: note: '<anonymous>' declared here
   420 |       result = off_type(bp::extract<off_type>(py_tell()));
       |                                                        ^
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function 'RDKit::MolAlign::PyO3A* RDKit::MolAlign::getCrippenO3A(RDKit::ROMol&, RDKit::ROMol&, boost::python::list, boost::python::list, int, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:460:40: warning: comparison of integer expressions of different signedness: 'boost::python::ssize_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
+  460 |       (python::len(prbCrippenContribs) == prbNAtoms)) {
+      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:475:40: warning: comparison of integer expressions of different signedness: 'boost::python::ssize_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
+  475 |       (python::len(refCrippenContribs) == refNAtoms)) {
+      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function 'boost::python::tuple RDKit::MolAlign::getCrippenO3AForConfs(RDKit::ROMol&, RDKit::ROMol&, int, boost::python::list, boost::python::list, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)':
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:536:40: warning: comparison of integer expressions of different signedness: 'boost::python::ssize_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
+  536 |       (python::len(prbCrippenContribs) == prbNAtoms)) {
+      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:551:40: warning: comparison of integer expressions of different signedness: 'boost::python::ssize_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
+  551 |       (python::len(refCrippenContribs) == refNAtoms)) {
+      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
 [ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdTautomerQuery.so
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdTautomerQuery.dir/link.txt --verbose=1
+[ 97%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -MF CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o.d -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdTautomerQuery.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdTautomerQuery.so CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o  ../../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 97%] Built target rdTautomerQuery
-make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/depend
+make  -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake "--color="
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+make  -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o -MF CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o.d -o CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/catch_rgd.cpp
+[ 97%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -MF CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
+[ 97%] Linking CXX executable testO3AAlign
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testO3AAlign.dir/link.txt --verbose=1
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+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 97%] Built target testO3AAlign
+make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 97%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -MF CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o.d -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
+[ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdMolAlign.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o  ../../../../lib/libRDKitO3AAlign.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitDescriptors.so.1.2024.09.2 ../../../../lib/libRDKitPartialCharges.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitForceField.so.1.2024.09.2 ../../../../lib/libRDKitOptimizer.so.1.2024.09.2 ../../../../lib/libRDKitTrajectory.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 97%] Built target rdMolAlign
+make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 97%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o -MF CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o.d -o CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/testRGroupInternals.cpp
+In file included from /usr/include/c++/14/vector:72,
+                 from /build/reproducible-path/rdkit-202409.2/Code/Geometry/point.h:16,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolPickler.h:14,
+                 from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:34:
+/usr/include/c++/14/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = RDKit::Dict::Pair; _Alloc = std::allocator<RDKit::Dict::Pair>]':
+/usr/include/c++/14/bits/vector.tcc:181:5: note: parameter passing for argument of type 'std::vector<RDKit::Dict::Pair>::iterator' changed in GCC 7.1
+  181 |     vector<_Tp, _Alloc>::
+      |     ^~~~~~~~~~~~~~~~~~~
 [ 98%] Linking CXX executable testRGroupDecompInternals
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecompInternals.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testRGroupDecompInternals.dir/link.d CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o -o testRGroupDecompInternals  ../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitga.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [ 98%] Built target testRGroupDecompInternals
-make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/depend
+make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/build
+make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 98%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/GaExample.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/GaExample.cpp.o -MF CMakeFiles/gaExample.dir/GaExample.cpp.o.d -o CMakeFiles/gaExample.dir/GaExample.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/GaExample.cpp
+[ 98%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o -MF CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o.d -o CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/catch_rgd.cpp
+[ 98%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -MF CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/PatternFactory.cpp
 In file included from /usr/include/c++/14/vector:66:
 In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = RDKit::Dict::Pair; _Alloc = std::allocator<RDKit::Dict::Pair>]',
     inlined from 'void RDKit::Dict::clearVal(const std::string&)' at /build/reproducible-path/rdkit-202409.2/Code/RDGeneral/Dict.h:320:20,
@@ -14372,13 +14402,25 @@
 /usr/include/c++/14/bits/stl_vector.h:1537:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::Dict::Pair*, std::vector<RDKit::Dict::Pair> >' changed in GCC 7.1
  1537 |       { return _M_erase(begin() + (__position - cbegin())); }
       |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 98%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -MF CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/PatternFactory.cpp
-[ 98%] Linking CXX executable gaExample
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaExample.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/gaExample.dir/link.d CMakeFiles/gaExample.dir/GaExample.cpp.o -o gaExample  ../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitga.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+[ 98%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/SubstructLibrary.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2024.09.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o  ../../../lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2024.09.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 98%] Built target SubstructLibrary
+make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/depend
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 98%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/GaExample.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/GaExample.cpp.o -MF CMakeFiles/gaExample.dir/GaExample.cpp.o.d -o CMakeFiles/gaExample.dir/GaExample.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/GaExample.cpp
+[ 98%] Linking CXX executable testRGroupDecomp
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testRGroupDecomp.dir/link.d CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp  ../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitga.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 98%] Built target gaExample
+[ 98%] Built target testRGroupDecomp
 make  -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake "--color="
@@ -14387,41 +14429,40 @@
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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-[ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
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-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 98%] Built target rdChemReactions
-[ 98%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
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-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,--dependency-file,CMakeFiles/SubstructLibrary.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2024.09.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o  ../../../lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl /usr/lib/arm-linux-gnueabihf/libmaeparser.so
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2024.09.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/rgroupCatchTests.dir/link.d CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o -o rgroupCatchTests  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitga.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 98%] Built target SubstructLibrary
+[ 98%] Built target rgroupCatchTests
 make  -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
-make  -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/depend
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/DependInfo.cmake "--color="
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/rgroupCatchTests.dir/link.d CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o -o rgroupCatchTests  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitga.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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 make  -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
+make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 98%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -MF CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o.d -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
+[ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdChemReactions.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o  ../../../../lib/libRDKitMarvinParser.so.1.2024.09.2 ../../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
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+[ 98%] Built target rdChemReactions
+make  -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/depend
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[ 98%] Built target rgroupCatchTests
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+make  -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/catch_tests.cpp
+[ 99%] Linking CXX executable gaExample
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaExample.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/gaExample.dir/link.d CMakeFiles/gaExample.dir/GaExample.cpp.o -o gaExample  ../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitga.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[ 99%] Built target gaExample
 make  -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
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 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202409.2 /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/Wrap /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake "--color="
-[ 98%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -MF CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o.d -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
-[ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202409.2/External -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/catch_tests.cpp
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 make  -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
 make[4]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
@@ -14429,11 +14470,6 @@
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
 [100%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/reproducible-path/rdkit-202409.2/External -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/rdkit-202409.2/Code -I/build/reproducible-path/rdkit-202409.2/External/boost-numeric-bindings -isystem /usr/include/python3.12 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
-[100%] Linking CXX executable testRGroupDecomp
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/testRGroupDecomp.dir/link.d CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp  ../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 ../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../lib/libRDKitga.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[100%] Built target testRGroupDecomp
 In file included from /usr/include/boost/python/object/make_ptr_instance.hpp:8,
                  from /usr/include/boost/python/to_python_indirect.hpp:11,
                  from /usr/include/boost/python/converter/arg_to_python.hpp:10,
@@ -14452,16 +14488,16 @@
 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file,CMakeFiles/rdRGroupDecomposition.dir/link.d -Wl,-z,relro -Wl,-z,now -shared  -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o  ../../../../lib/libRDKitRGroupDecomposition.so.1.2024.09.2 ../../../../lib/libRDKitRDBoost.so.1.2024.09.2 ../../../../lib/libRDKitFMCS.so.1.2024.09.2 ../../../../lib/libRDKitga.so.1.2024.09.2 ../../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../../lib/libRDKitFileParsers.so.1.2024.09.2 ../../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../../lib/libRDKitAlignment.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../../lib/libRDKitCatalogs.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_numpy312.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [100%] Built target rdRGroupDecomposition
-[100%] Linking CXX executable substructLibraryCatchTest
-cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryCatchTest.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/substructLibraryCatchTest.dir/link.d CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -o substructLibraryCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitSubstructLibrary.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
-make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-[100%] Built target substructLibraryCatchTest
 [100%] Linking CXX executable substructLibraryTest
 cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/substructLibraryTest.dir/link.d CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest  ../../../lib/libRDKitSubstructLibrary.so.1.2024.09.2 ../../../lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
 make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 [100%] Built target substructLibraryTest
+[100%] Linking CXX executable substructLibraryCatchTest
+cd /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryCatchTest.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202409.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/substructLibraryCatchTest.dir/link.d CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -o substructLibraryCatchTest  ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitSubstructLibrary.so.1.2024.09.2 /usr/lib/libCatch2.a ../../../lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 ../../../lib/libRDKitMolEnumerator.so.1.2024.09.2 ../../../lib/libRDKitTautomerQuery.so.1.2024.09.2 ../../../lib/libRDKitMolStandardize.so.1.2024.09.2 ../../../lib/libRDKitChemReactions.so.1.2024.09.2 ../../../lib/libRDKitFileParsers.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libmaeparser.so ../../../lib/libRDKitChemTransforms.so.1.2024.09.2 ../../../lib/libRDKitDepictor.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libcoordgen.so ../../../lib/libRDKitMolAlign.so.1.2024.09.2 ../../../lib/libRDKitMolTransforms.so.1.2024.09.2 ../../../lib/libRDKitEigenSolvers.so.1.2024.09.2 ../../../lib/libRDKitAlignment.so.1.2024.09.2 ../../../lib/libRDKitFilterCatalog.so.1.2024.09.2 ../../../lib/libRDKitFingerprints.so.1.2024.09.2 ../../../lib/libRDKitSubgraphs.so.1.2024.09.2 ../../../lib/libRDKitSubstructMatch.so.1.2024.09.2 ../../../lib/libRDKitGenericGroups.so.1.2024.09.2 ../../../lib/libRDKitSmilesParse.so.1.2024.09.2 ../../../lib/libRDKitGraphMol.so.1.2024.09.2 ../../../lib/libRDKitRDGeometryLib.so.1.2024.09.2 ../../../lib/libRDKitCatalogs.so.1.2024.09.2 ../../../lib/libRDKitDataStructs.so.1.2024.09.2 ../../../lib/libRDKitRDGeneral.so.1.2024.09.2 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_serialization.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.83.0 -ldl
+make[4]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
+[100%] Built target substructLibraryCatchTest
 In file included from /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp:36:
 /build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
 /build/reproducible-path/rdkit-202409.2/Code/RDBoost/python_streambuf.h:185:56: warning: '*(const long long int*)((char*)&<unnamed> + offsetof(boost::python::extract<long long int>,boost::python::extract<long long int>::<unnamed>.boost::python::converter::extract_rvalue<long long int>::m_data.boost::python::converter::rvalue_from_python_data<long long int>::<unnamed>.boost::python::converter::rvalue_from_python_storage<long long int>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
@@ -14617,74 +14653,74 @@
 Searching for files to exclude
 Searching INPUT for files to process...
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/libs
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MarvinParse
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/TautomerQuery
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/GeneralizedSubstruct
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/StructChecker
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers
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-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SmilesParse
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolHash
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary
-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemTransforms
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/GenericGroups
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Abbreviations
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Trajectory
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-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DetermineBonds
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ScaffoldNetwork
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+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/TautomerQuery
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Substruct
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MMPA
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/libs
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+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/CrystalFF
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/UFF
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/MMFF
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DetermineBonds
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 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/tutorial
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FileParsers
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize
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 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/AcidBaseCatalog
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/FragmentCatalog
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/TransformCatalog
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-Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/TautomerCatalog
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MarvinParse
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/configs
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/rules
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Subgraphs
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolProcessing
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/StructChecker
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/ReducedGraphs
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/data
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/GraphMol/GeneralizedSubstruct
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/Catalogs
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/DataStructs
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/Query
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/ML
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/ML/Data
+Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/ML/Cluster
 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/ML/Cluster/Murtagh
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 Searching for files in directory /build/reproducible-path/rdkit-202409.2/Code/SimDivPickers
@@ -15690,10 +15726,19 @@
 Generating code for file Feature.h...
 Generating code for file AngleConstraints.h...
 Generating code for file Contrib.h...
+Generating code for file DistanceConstraint.h...
+Generating code for file DistanceConstraint.h...
+Generating code for file DistanceConstraint.h...
 Generating code for file DistanceConstraints.h...
 Generating code for file ForceField.h...
 Generating code for file OopBend.h...
 Generating code for file StretchBend.h...
+Generating code for file PositionConstraint.h...
+Generating code for file PositionConstraint.h...
+Generating code for file PositionConstraint.h...
+Generating code for file TorsionConstraint.h...
+Generating code for file TorsionConstraint.h...
+Generating code for file TorsionConstraint.h...
 Generating code for file AngleBend.h...
 Generating code for file AngleBend.h...
 Generating code for file AngleConstraint.h...
@@ -15703,23 +15748,14 @@
 Generating code for file BondStretch.h...
 Generating code for file Contribs.h...
 Generating code for file Contribs.h...
-Generating code for file DistanceConstraint.h...
-Generating code for file DistanceConstraint.h...
-Generating code for file DistanceConstraint.h...
 Generating code for file Inversion.h...
 Generating code for file Inversions.h...
 Generating code for file Nonbonded.h...
 Generating code for file Nonbonded.h...
 Generating code for file Params.h...
 Generating code for file Params.h...
-Generating code for file PositionConstraint.h...
-Generating code for file PositionConstraint.h...
-Generating code for file PositionConstraint.h...
 Generating code for file TorsionAngle.h...
 Generating code for file TorsionAngle.h...
-Generating code for file TorsionConstraint.h...
-Generating code for file TorsionConstraint.h...
-Generating code for file TorsionConstraint.h...
 Generating code for file Utils.h...
 Generating code for file Utils.h...
 Generating code for file Grid3D.h...
@@ -15953,6 +15989,8 @@
 Generating code for file MolStandardize.h...
 Generating code for file Normalize.h...
 Generating code for file Pipeline.h...
+Generating code for file Tautomer.h...
+Generating code for file Tautomer.h...
 Generating code for file TautomerCatalogEntry.h...
 Generating code for file TautomerCatalogParams.h...
 Generating code for file TautomerCatalogUtils.h...
@@ -16014,8 +16052,6 @@
 Generating code for file StripSmallFragments.h...
 Generating code for file StructChecker.h...
 Generating code for file StructCheckerOptions.h...
-Generating code for file Tautomer.h...
-Generating code for file Tautomer.h...
 Generating code for file Utilites.h...
 Generating code for file Subgraphs.h...
 Generating code for file SubgraphUtils.h...
@@ -16124,10 +16160,19 @@
 Generating docs for file Feature.h...
 Generating docs for file AngleConstraints.h...
 Generating docs for file Contrib.h...
+Generating docs for file DistanceConstraint.h...
+Generating docs for file DistanceConstraint.h...
+Generating docs for file DistanceConstraint.h...
 Generating docs for file DistanceConstraints.h...
 Generating docs for file ForceField.h...
 Generating docs for file OopBend.h...
 Generating docs for file StretchBend.h...
+Generating docs for file PositionConstraint.h...
+Generating docs for file PositionConstraint.h...
+Generating docs for file PositionConstraint.h...
+Generating docs for file TorsionConstraint.h...
+Generating docs for file TorsionConstraint.h...
+Generating docs for file TorsionConstraint.h...
 Generating docs for file AngleBend.h...
 Generating docs for file AngleBend.h...
 Generating docs for file AngleConstraint.h...
@@ -16137,23 +16182,14 @@
 Generating docs for file BondStretch.h...
 Generating docs for file Contribs.h...
 Generating docs for file Contribs.h...
-Generating docs for file DistanceConstraint.h...
-Generating docs for file DistanceConstraint.h...
-Generating docs for file DistanceConstraint.h...
 Generating docs for file Inversion.h...
 Generating docs for file Inversions.h...
 Generating docs for file Nonbonded.h...
 Generating docs for file Nonbonded.h...
 Generating docs for file Params.h...
 Generating docs for file Params.h...
-Generating docs for file PositionConstraint.h...
-Generating docs for file PositionConstraint.h...
-Generating docs for file PositionConstraint.h...
 Generating docs for file TorsionAngle.h...
 Generating docs for file TorsionAngle.h...
-Generating docs for file TorsionConstraint.h...
-Generating docs for file TorsionConstraint.h...
-Generating docs for file TorsionConstraint.h...
 Generating docs for file Utils.h...
 Generating docs for file Utils.h...
 Generating docs for file Grid3D.h...
@@ -16389,6 +16425,8 @@
 Generating docs for file MolStandardize.h...
 Generating docs for file Normalize.h...
 Generating docs for file Pipeline.h...
+Generating docs for file Tautomer.h...
+Generating docs for file Tautomer.h...
 Generating docs for file TautomerCatalogEntry.h...
 Generating docs for file TautomerCatalogParams.h...
 Generating docs for file TautomerCatalogUtils.h...
@@ -16450,8 +16488,6 @@
 Generating docs for file StripSmallFragments.h...
 Generating docs for file StructChecker.h...
 Generating docs for file StructCheckerOptions.h...
-Generating docs for file Tautomer.h...
-Generating docs for file Tautomer.h...
 Generating docs for file Utilites.h...
 Generating docs for file Subgraphs.h...
 Generating docs for file SubgraphUtils.h...
@@ -19751,7 +19787,7 @@
 done
 processing RDKit.tex... index Overview Install GettingStartedInPython RDKit_Book Cookbook Cartridge BackwardsIncompatibleChanges api-docs source/rdkit source/rdkit.Avalon source/rdkit.Avalon.pyAvalonTools source/rdkit.Chem source/rdkit.Chem.AtomPairs source/rdkit.Chem.AtomPairs.Pairs source/rdkit.Chem.AtomPairs.Sheridan source/rdkit.Chem.AtomPairs.Torsions source/rdkit.Chem.AtomPairs.Utils source/rdkit.Chem.ChemUtils source/rdkit.Chem.ChemUtils.AlignDepict source/rdkit.Chem.ChemUtils.BulkTester source/rdkit.Chem.ChemUtils.DescriptorUtilities source/rdkit.Chem.ChemUtils.SDFToCSV source/rdkit.Chem.ChemUtils.TemplateExpand source/rdkit.Chem.Draw source/rdkit.Chem.Draw.IPythonConsole source/rdkit.Chem.Draw.MolDrawing source/rdkit.Chem.Draw.SimilarityMaps source/rdkit.Chem.Draw.rdMolDraw2D source/rdkit.Chem.Draw.rdMolDraw2DQt source/rdkit.Chem.EState source/rdkit.Chem.EState.AtomTypes source/rdkit.Chem.EState.EState source/rdkit.Chem.EState.EState_VSA source/rdkit.Chem.EState.Fingerprinter source/rdkit.Chem.FeatMaps source/rdkit.Chem.FeatMaps.FeatMapParser source/rdkit.Chem.FeatMaps.FeatMapPoint source/rdkit.Chem.FeatMaps.FeatMapUtils source/rdkit.Chem.FeatMaps.FeatMaps source/rdkit.Chem.Features source/rdkit.Chem.Features.FeatDirUtilsRD source/rdkit.Chem.Features.ShowFeats source/rdkit.Chem.Fingerprints source/rdkit.Chem.Fingerprints.ClusterMols source/rdkit.Chem.Fingerprints.DbFpSupplier source/rdkit.Chem.Fingerprints.FingerprintMols source/rdkit.Chem.Fingerprints.MolSimilarity source/rdkit.Chem.Fingerprints.SimilarityScreener source/rdkit.Chem.Fraggle source/rdkit.Chem.Fraggle.FraggleSim source/rdkit.Chem.MolDb source/rdkit.Chem.MolDb.FingerprintUtils source/rdkit.Chem.MolDb.Loader source/rdkit.Chem.MolDb.Loader_orig source/rdkit.Chem.MolDb.Loader_sa source/rdkit.Chem.MolKey source/rdkit.Chem.MolKey.InchiInfo source/rdkit.Chem.MolKey.MolKey source/rdkit.Chem.Pharm2D source/rdkit.Chem.Pharm2D.Generate source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D source/rdkit.Chem.Pharm2D.Matcher source/rdkit.Chem.Pharm2D.SigFactory source/rdkit.Chem.Pharm2D.Utils source/rdkit.Chem.Pharm3D source/rdkit.Chem.Pharm3D.EmbedLib source/rdkit.Chem.Pharm3D.ExcludedVolume source/rdkit.Chem.Pharm3D.Pharmacophore source/rdkit.Chem.Scaffolds source/rdkit.Chem.Scaffolds.MurckoScaffold source/rdkit.Chem.Scaffolds.rdScaffoldNetwork source/rdkit.Chem.SimpleEnum source/rdkit.Chem.SimpleEnum.Enumerator source/rdkit.Chem.Subshape source/rdkit.Chem.Subshape.BuilderUtils source/rdkit.Chem.Subshape.SubshapeAligner source/rdkit.Chem.Subshape.SubshapeBuilder source/rdkit.Chem.Subshape.SubshapeObjects source/rdkit.Chem.Suppliers source/rdkit.Chem.Suppliers.DbMolSupplier source/rdkit.Chem.Suppliers.MolSupplier source/rdkit.Chem.fmcs source/rdkit.Chem.fmcs.fmcs source/rdkit.Chem.AllChem source/rdkit.Chem.BRICS source/rdkit.Chem.BuildFragmentCatalog source/rdkit.Chem.ChemicalFeatures source/rdkit.Chem.ChemicalForceFields source/rdkit.Chem.Crippen source/rdkit.Chem.Descriptors source/rdkit.Chem.Descriptors3D source/rdkit.Chem.EnumerateHeterocycles source/rdkit.Chem.EnumerateStereoisomers source/rdkit.Chem.FastSDMolSupplier source/rdkit.Chem.FeatFinderCLI source/rdkit.Chem.FilterCatalog source/rdkit.Chem.FragmentCatalog source/rdkit.Chem.FragmentMatcher source/rdkit.Chem.Fragments source/rdkit.Chem.FunctionalGroups source/rdkit.Chem.GraphDescriptors source/rdkit.Chem.Graphs source/rdkit.Chem.Lipinski source/rdkit.Chem.MACCSkeys source/rdkit.Chem.MolCatalog source/rdkit.Chem.MolStandardize source/rdkit.Chem.MolStandardize.rdMolStandardize source/rdkit.Chem.MolSurf source/rdkit.Chem.PandasTools source/rdkit.Chem.PeriodicTable source/rdkit.Chem.PropertyMol source/rdkit.Chem.PyMol source/rdkit.Chem.QED source/rdkit.Chem.Randomize source/rdkit.Chem.Recap source/rdkit.Chem.ReducedGraphs source/rdkit.Chem.RegistrationHash source/rdkit.Chem.SATIS source/rdkit.Chem.SaltRemover source/rdkit.Chem.ShowMols source/rdkit.Chem.SpacialScore source/rdkit.Chem.TemplateAlign source/rdkit.Chem.TorsionFingerprints source/rdkit.Chem.inchi source/rdkit.Chem.rdchem source/rdkit.Chem.rdDistGeom source/rdkit.Chem.rdqueries source/rdkit.Chem.rdFMCS source/rdkit.Chem.rdMolAlign source/rdkit.Chem.rdMolHash source/rdkit.Chem.rdReducedGraphs source/rdkit.Chem.rdtrajectory source/rdkit.Chem.rdMolTransforms source/rdkit.Chem.rdmolfiles source/rdkit.Chem.rdPartialCharges source/rdkit.Chem.rdMolCatalog source/rdkit.Chem.rdCoordGen source/rdkit.Chem.rdMolChemicalFeatures source/rdkit.Chem.rdMMPA source/rdkit.Chem.rdRGroupDecomposition source/rdkit.Chem.rdForceFieldHelpers source/rdkit.Chem.rdDepictor source/rdkit.Chem.rdChemicalFeatures source/rdkit.Chem.rdmolops source/rdkit.Chem.rdFreeSASA source/rdkit.Chem.rdMolInterchange source/rdkit.Chem.rdShapeHelpers source/rdkit.Chem.rdinchi source/rdkit.Chem.rdChemReactions source/rdkit.Chem.rdSubstructLibrary source/rdkit.Chem.rdfiltercatalog source/rdkit.Chem.rdfragcatalog source/rdkit.Chem.rdMolDescriptors source/rdkit.Chem.rdFingerprintGenerator source/rdkit.Chem.rdMHFPFingerprint source/rdkit.Chem.rdSLNParse source/rdkit.Chem.rdAbbreviations source/rdkit.Chem.rdDeprotect source/rdkit.Chem.rdMolEnumerator source/rdkit.Chem.rdCIPLabeler source/rdkit.Chem.rdTautomerQuery source/rdkit.Chem.rdEHTTools source/rdkit.Chem.rdDetermineBonds source/rdkit.Chem.rdShapeAlign source/rdkit.DataManip source/rdkit.DataManip.Metric source/rdkit.DataManip.Metric.rdMetricMatrixCalc source/rdkit.DataStructs source/rdkit.DataStructs.BitEnsemble source/rdkit.DataStructs.BitEnsembleDb source/rdkit.DataStructs.BitUtils source/rdkit.DataStructs.LazySignature source/rdkit.DataStructs.TopNContainer source/rdkit.DataStructs.VectCollection source/rdkit.DataStructs.cDataStructs source/rdkit.Dbase source/rdkit.Dbase.DbConnection source/rdkit.Dbase.DbInfo source/rdkit.Dbase.DbModule source/rdkit.Dbase.DbResultSet source/rdkit.Dbase.DbUtils source/rdkit.Dbase.StorageUtils source/rdkit.DistanceGeometry source/rdkit.DistanceGeometry.DistGeom source/rdkit.ForceField source/rdkit.ForceField.rdForceField source/rdkit.Geometry source/rdkit.Geometry.rdGeometry source/rdkit.ML source/rdkit.ML.Cluster source/rdkit.ML.Cluster.Butina source/rdkit.ML.Cluster.ClusterUtils source/rdkit.ML.Cluster.ClusterVis source/rdkit.ML.Cluster.Clusters source/rdkit.ML.Cluster.Murtagh source/rdkit.ML.Cluster.Resemblance source/rdkit.ML.Cluster.Standardize source/rdkit.ML.Cluster.Clustering source/rdkit.ML.Data source/rdkit.ML.Data.DataUtils source/rdkit.ML.Data.FindQuantBounds source/rdkit.ML.Data.MLData source/rdkit.ML.Data.Quantize source/rdkit.ML.Data.cQuantize source/rdkit.ML.Data.SplitData source/rdkit.ML.Data.Stats source/rdkit.ML.Data.Transforms source/rdkit.ML.Descriptors source/rdkit.ML.Descriptors.CompoundDescriptors source/rdkit.ML.Descriptors.Descriptors source/rdkit.ML.Descriptors.MoleculeDescriptors source/rdkit.ML.Descriptors.Parser source/rdkit.ML.InfoTheory source/rdkit.ML.InfoTheory.BitClusterer source/rdkit.ML.InfoTheory.BitRank source/rdkit.ML.InfoTheory.entropy source/rdkit.ML.InfoTheory.rdInfoTheory source/rdkit.ML.MLUtils source/rdkit.ML.MLUtils.VoteImg source/rdkit.ML.SLT source/rdkit.ML.SLT.Risk source/rdkit.ML.Scoring source/rdkit.ML.Scoring.Scoring source/rdkit.ML.MatOps source/rdkit.ML.files source/rdkit.Numerics source/rdkit.Numerics.rdAlignment source/rdkit.SimDivFilters source/rdkit.SimDivFilters.SimilarityPickers source/rdkit.SimDivFilters.rdSimDivPickers source/rdkit.VLib source/rdkit.VLib.NodeLib source/rdkit.VLib.NodeLib.DbMolSupply source/rdkit.VLib.NodeLib.DbPickleSupplier source/rdkit.VLib.NodeLib.SDSupply source/rdkit.VLib.NodeLib.SmartsMolFilter source/rdkit.VLib.NodeLib.SmartsRemover source/rdkit.VLib.NodeLib.SmilesDupeFilter source/rdkit.VLib.NodeLib.SmilesOutput source/rdkit.VLib.NodeLib.SmilesSupply source/rdkit.VLib.Filter source/rdkit.VLib.Node source/rdkit.VLib.Output source/rdkit.VLib.Supply source/rdkit.VLib.Transform source/rdkit.utils source/rdkit.utils.cactvs source/rdkit.utils.chemutils source/rdkit.utils.fileutils source/rdkit.utils.listutils source/rdkit.utils.spiral source/rdkit.rdBase source/rdkit.RDConfig source/rdkit.RDLogger source/rdkit.RDPaths source/rdkit.RDRandom source/rdkit.TestRunner GettingStartedInC++ 
 resolving references...
-WARNING: Could not fetch remote image: https://img.shields.io/badge/Powered%20by-RDKit-3838ff.svg?logo=data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQBAMAAADt3eJSAAAABGdBTUEAALGPC/xhBQAAACBjSFJNAAB6JgAAgIQAAPoAAACA6AAAdTAAAOpgAAA6mAAAF3CculE8AAAAFVBMVEXc3NwUFP8UPP9kZP+MjP+0tP////9ZXZotAAAAAXRSTlMAQObYZgAAAAFiS0dEBmFmuH0AAAAHdElNRQfmAwsPGi+MyC9RAAAAQElEQVQI12NgQABGQUEBMENISUkRLKBsbGwEEhIyBgJFsICLC0iIUdnExcUZwnANQWfApKCK4doRBsKtQFgKAQC5Ww1JEHSEkAAAACV0RVh0ZGF0ZTpjcmVhdGUAMjAyMi0wMy0xMVQxNToyNjo0NyswMDowMDzr2J4AAAAldEVYdGRhdGU6bW9kaWZ5ADIwMjItMDMtMTFUMTU6MjY6NDcrMDA6MDBNtmAiAAAAAElFTkSuQmCC [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/Powered%20by-RDKit-3838ff.svg?logo=data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQBAMAAADt3eJSAAAABGdBTUEAALGPC/xhBQAAACBjSFJNAAB6JgAAgIQAAPoAAACA6AAAdTAAAOpgAAA6mAAAF3CculE8AAAAFVBMVEXc3NwUFP8UPP9kZP+MjP+0tP////9ZXZotAAAAAXRSTlMAQObYZgAAAAFiS0dEBmFmuH0AAAAHdElNRQfmAwsPGi+MyC9RAAAAQElEQVQI12NgQABGQUEBMENISUkRLKBsbGwEEhIyBgJFsICLC0iIUdnExcUZwnANQWfApKCK4doRBsKtQFgKAQC5Ww1JEHSEkAAAACV0RVh0ZGF0ZTpjcmVhdGUAMjAyMi0wMy0xMVQxNToyNjo0NyswMDowMDzr2J4AAAAldEVYdGRhdGU6bW9kaWZ5ADIwMjItMDMtMTFUMTU6MjY6NDcrMDA6MDBNtmAiAAAAAElFTkSuQmCC (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0xf3b20780>: Failed to resolve 'img.shields.io' ([Errno -3] Temporary failure in name resolution)"))]
+WARNING: Could not fetch remote image: https://img.shields.io/badge/Powered%20by-RDKit-3838ff.svg?logo=data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQBAMAAADt3eJSAAAABGdBTUEAALGPC/xhBQAAACBjSFJNAAB6JgAAgIQAAPoAAACA6AAAdTAAAOpgAAA6mAAAF3CculE8AAAAFVBMVEXc3NwUFP8UPP9kZP+MjP+0tP////9ZXZotAAAAAXRSTlMAQObYZgAAAAFiS0dEBmFmuH0AAAAHdElNRQfmAwsPGi+MyC9RAAAAQElEQVQI12NgQABGQUEBMENISUkRLKBsbGwEEhIyBgJFsICLC0iIUdnExcUZwnANQWfApKCK4doRBsKtQFgKAQC5Ww1JEHSEkAAAACV0RVh0ZGF0ZTpjcmVhdGUAMjAyMi0wMy0xMVQxNToyNjo0NyswMDowMDzr2J4AAAAldEVYdGRhdGU6bW9kaWZ5ADIwMjItMDMtMTFUMTU6MjY6NDcrMDA6MDBNtmAiAAAAAElFTkSuQmCC [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/Powered%20by-RDKit-3838ff.svg?logo=data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQBAMAAADt3eJSAAAABGdBTUEAALGPC/xhBQAAACBjSFJNAAB6JgAAgIQAAPoAAACA6AAAdTAAAOpgAAA6mAAAF3CculE8AAAAFVBMVEXc3NwUFP8UPP9kZP+MjP+0tP////9ZXZotAAAAAXRSTlMAQObYZgAAAAFiS0dEBmFmuH0AAAAHdElNRQfmAwsPGi+MyC9RAAAAQElEQVQI12NgQABGQUEBMENISUkRLKBsbGwEEhIyBgJFsICLC0iIUdnExcUZwnANQWfApKCK4doRBsKtQFgKAQC5Ww1JEHSEkAAAACV0RVh0ZGF0ZTpjcmVhdGUAMjAyMi0wMy0xMVQxNToyNjo0NyswMDowMDzr2J4AAAAldEVYdGRhdGU6bW9kaWZ5ADIwMjItMDMtMTFUMTU6MjY6NDcrMDA6MDBNtmAiAAAAAElFTkSuQmCC (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0xb2ca0798>: Failed to resolve 'img.shields.io' ([Errno -3] Temporary failure in name resolution)"))]
 done
 writing... done
 copying images... [  1%] images/Cc1ccccc1.png
@@ -22775,10 +22811,10 @@
 find /build/reproducible-path/rdkit-202409.2 -name rdchem.so
 /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/rdkit/Chem/rdchem.so
 PYTHONPATH=/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/:/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//rdkit/Chem/ LD_LIBRARY_PATH="/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib:" dh_auto_test
-	cd obj-arm-linux-gnueabihf && make -j5 test ARGS\+=--verbose ARGS\+=-j5
+	cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4
 make[2]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 Running tests...
-/usr/bin/ctest --force-new-ctest-process --verbose -j5
+/usr/bin/ctest --force-new-ctest-process --verbose -j4
 UpdateCTestConfiguration  from :/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl
 Parse Config file:/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl
  Add coverage exclude regular expressions.
@@ -22815,14 +22851,8 @@
 4: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/testRDValue
 4: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral
 4: Test timeout computed to be: 1500
-test 5
-        Start   5: testConcurrentQueue
-
-5: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/testConcurrentQueue
-5: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral
-5: Test timeout computed to be: 1500
-3: [19:02:55] Testing Github940: property dictionaries leaking memory
-3: [19:02:55] 	done
+3: [01:57:57] Testing Github940: property dictionaries leaking memory
+3: [01:57:57] 	done
 3: Testing RDValue
 3: Testing RDAny
 3: dict set int vect
@@ -22839,127 +22869,21 @@
 4: == unsigned int
 4: == bool
 4: == std::string
-  1/230 Test   #4: testRDValue ............................   Passed    0.07 sec
-test 6
-        Start   6: dictTestsCatch
+  1/230 Test   #4: testRDValue ............................   Passed    0.02 sec
+test 5
+        Start   5: testConcurrentQueue
 
-6: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/dictTestsCatch
-6: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral
-6: Test timeout computed to be: 1500
-5: [19:02:55] 
+5: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/testConcurrentQueue
+5: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral
+5: Test timeout computed to be: 1500
+5: [01:57:57] 
 5: -----------------------------------------
-5: [19:02:55] Finished: testPushAndPop() 
-5: [19:02:55] 
+5: [01:57:57] Finished: testPushAndPop() 
+5: [01:57:57] 
 5: -----------------------------------------
-5: [19:02:55] 
+5: [01:57:57] 
 5: -----------------------------------------
-6: Randomness seeded to: 1117966004
-6: ===============================================================================
-6: All tests passed (32 assertions in 2 test cases)
-6: 
-  2/230 Test   #6: dictTestsCatch .........................   Passed    0.06 sec
-test 7
-        Start   7: logTestsCatch
-
-7: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/logTestsCatch
-7: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral
-7: Test timeout computed to be: 1500
-7: [19:02:55] should not be silent
-7: [19:02:55] should not be silent
-7: Randomness seeded to: 2981858824
-7: [19:02:55] should not be silent
-7: [19:02:55] should not be silent
-7: [19:02:55] should not be silent
-7: [19:02:55] should not be silent
-7: [19:02:55] should not be silent
-7: [19:02:55] should not be silent
-7: [19:02:55] should not be silent
-7: [19:02:55] should not be silent
-7: ===============================================================================
-7: All tests passed (26 assertions in 3 test cases)
-7: 
-  3/230 Test   #7: logTestsCatch ..........................   Passed    0.07 sec
-test 8
-        Start   8: testDataStructs
-
-8: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/testDataStructs
-8: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs
-8: Test timeout computed to be: 1500
-8: [19:02:55] pass
-8: [19:02:55] v3 4
-8: [19:02:55] v4 5
-8: [19:02:55]  SPARSE -----------------------------------
-8: [19:02:55] Set 10: 0
-8: [19:02:55] Set 11: 0
-8: [19:02:55] Set 14: 0
-8: [19:02:55] Set 10: 1
-8: [19:02:55] Get 14: 1
-8: [19:02:55] Num: 20
-8: [19:02:55] NumOn: 3
-8: [19:02:55] NumOff: 17
-8: 10, 11, 14, 
-8: [19:02:55] t2[19]: 0
-8: [19:02:55] t2[14]: 1
-8: [19:02:55] t2[19]: 0
-8: [19:02:55] t2[14]: 0
-8: t1: 10, 11, 14, 
-8: t2: 10, 11, 15, 17, 
-8: t1|t2: 10, 11, 14, 15, 17, 
-8: t1&t2: 10, 11, 
-8: t1^t2: 14, 15, 17, 
-8: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
-8:  except 
-8: [19:02:55]  Explicit ----------------------------------
-8: [19:02:55] Set 10: 0
-8: [19:02:55] Set 11: 0
-8: [19:02:55] Set 14: 0
-8: [19:02:55] Set 10: 1
-8: [19:02:55] Get 14: 1
-8: [19:02:55] Num: 20
-8: [19:02:55] NumOn: 3
-8: [19:02:55] NumOff: 17
-8: 10, 11, 14, 
-8: [19:02:55] t2[19]: 0
-8: [19:02:55] t2[14]: 1
-8: [19:02:55] t2[19]: 0
-8: [19:02:55] t2[14]: 0
-8: t1: 10, 11, 14, 
-8: t2: 10, 11, 15, 17, 
-8: t1|t2: 10, 11, 14, 15, 17, 
-8: t1&t2: 10, 11, 
-8: t1^t2: 14, 15, 17, 
-8: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
-8:  except 
-8: [19:02:55]  Done
-8: [19:02:55]  Test DiscreteValue Vectors 1 ----------------------------
-8: [19:02:55] Expected failure: Value out of range
-8: [19:02:55] Expected failure: Value out of range
-8: [19:02:55] Expected failure: Value out of range
-8: [19:02:55] Expected failure: Value out of range
-8: [19:02:55] Expected failure: Value out of range
-8: [19:02:55]  Test DiscreteValue Vectors 2 ------------------------------
-8: [19:02:55]  Test DiscreteValue Vectors 3 ---------------------------
-8: [19:02:55]  Test DiscreteValue Operations -----------------------------
-8: [19:02:55]  Test DiscreteValue Operations 2 -------------------------- 
-8: [19:02:55]  Test SparseIntVect  ------------------------------------
-8: [19:02:55]  Test SparseIntVect Serialization  --------------------------
-8: [19:02:55]  Test BitVect Serialization  -------------------------------
-8: [19:02:55]  Test BitVect to FPS  -------------------------------
-8: [19:02:55]  Test BitVect to binary string  -------------------------------
-8: [19:02:55]  Test Similarity Measures BitVect -------------------------------
-8: [19:02:55]  Test Similarity Measures SparseBitVect -------------------------------
-8: [19:02:55]  Test BitVect with all ones -------------------------------
-8: [19:02:55]  Test Explicit BitVects: Concatenation Operation  -------------------------------
-8: [19:02:55]  Test bitmap operations  -------------------------------
-8: [19:02:55]  Test bitmaps as properties -------------------------------
-8: [19:02:55]  Test #3944: SparseIntVect copy constructor and assignment operators not clearing existing data-------------------------------
-  4/230 Test   #8: testDataStructs ........................   Passed    0.11 sec
-test 9
-        Start   9: testFPB
-
-9: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/testFPB
-9: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs
-9: Test timeout computed to be: 1500
+3: static boost any:0.134217 s
 1: core
 1:      RDKit          2D
 1: 
@@ -22994,13 +22918,6 @@
 1:   7  1  1  0
 1: M  END
 1: 
-  5/230 Test   #9: testFPB ................................   Passed    0.11 sec
-test 10
-        Start  10: testMultiFPB
-
-10: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/testMultiFPB
-10: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs
-10: Test timeout computed to be: 1500
 1: templated
 1:      RDKit          2D
 1: 
@@ -23424,25 +23341,128 @@
 1:   2  5  1  0
 1: M  END
 1: 
-  6/230 Test  #10: testMultiFPB ...........................   Passed    0.23 sec
-test 11
-        Start  11: catchDataStructs
+  2/230 Test   #2: pyCoordGen .............................***Exception: SegFault  0.80 sec
 
-11: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/catchDataStructs
-11: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs
-11: Test timeout computed to be: 1500
-11: Randomness seeded to: 3599098330
-11: ===============================================================================
-11: All tests passed (3 assertions in 1 test case)
-11: 
-  7/230 Test  #11: catchDataStructs .......................   Passed    0.12 sec
-test 12
-        Start  12: pyBV
+test 6
+        Start   6: dictTestsCatch
 
-12: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/testBV.py"
-12: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap
-12: Test timeout computed to be: 1500
-3: static boost any:0.552987 s
+6: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/dictTestsCatch
+6: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral
+6: Test timeout computed to be: 1500
+6: Randomness seeded to: 823933657
+6: ===============================================================================
+6: All tests passed (32 assertions in 2 test cases)
+6: 
+  3/230 Test   #6: dictTestsCatch .........................   Passed    0.02 sec
+test 7
+        Start   7: logTestsCatch
+
+7: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral/logTestsCatch
+7: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/RDGeneral
+7: Test timeout computed to be: 1500
+7: [01:57:58] should not be silent
+7: [01:57:58] should not be silent
+7: Randomness seeded to: 3623614317
+7: [01:57:58] should not be silent
+7: [01:57:58] should not be silent
+7: [01:57:58] should not be silent
+7: [01:57:58] should not be silent
+7: [01:57:58] should not be silent
+7: [01:57:58] should not be silent
+7: [01:57:58] should not be silent
+7: [01:57:58] should not be silent
+7: ===============================================================================
+7: All tests passed (26 assertions in 3 test cases)
+7: 
+  4/230 Test   #7: logTestsCatch ..........................   Passed    0.02 sec
+test 8
+        Start   8: testDataStructs
+
+8: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/testDataStructs
+8: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs
+8: Test timeout computed to be: 1500
+8: [01:57:58] pass
+8: [01:57:58] v3 4
+8: [01:57:58] v4 5
+8: [01:57:58]  SPARSE -----------------------------------
+8: [01:57:58] Set 10: 0
+8: [01:57:58] Set 11: 0
+8: [01:57:58] Set 14: 0
+8: [01:57:58] Set 10: 1
+8: [01:57:58] Get 14: 1
+8: [01:57:58] Num: 20
+8: [01:57:58] NumOn: 3
+8: [01:57:58] NumOff: 17
+8: 10, 11, 14, 
+8: [01:57:58] t2[19]: 0
+8: [01:57:58] t2[14]: 1
+8: [01:57:58] t2[19]: 0
+8: [01:57:58] t2[14]: 0
+8: t1: 10, 11, 14, 
+8: t2: 10, 11, 15, 17, 
+8: t1|t2: 10, 11, 14, 15, 17, 
+8: t1&t2: 10, 11, 
+8: t1^t2: 14, 15, 17, 
+8: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
+8:  except 
+8: [01:57:58]  Explicit ----------------------------------
+8: [01:57:58] Set 10: 0
+8: [01:57:58] Set 11: 0
+8: [01:57:58] Set 14: 0
+8: [01:57:58] Set 10: 1
+8: [01:57:58] Get 14: 1
+8: [01:57:58] Num: 20
+8: [01:57:58] NumOn: 3
+8: [01:57:58] NumOff: 17
+8: 10, 11, 14, 
+8: [01:57:58] t2[19]: 0
+8: [01:57:58] t2[14]: 1
+8: [01:57:58] t2[19]: 0
+8: [01:57:58] t2[14]: 0
+8: t1: 10, 11, 14, 
+8: t2: 10, 11, 15, 17, 
+8: t1|t2: 10, 11, 14, 15, 17, 
+8: t1&t2: 10, 11, 
+8: t1^t2: 14, 15, 17, 
+8: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
+8:  except 
+8: [01:57:58]  Done
+8: [01:57:58]  Test DiscreteValue Vectors 1 ----------------------------
+8: [01:57:58] Expected failure: Value out of range
+8: [01:57:58] Expected failure: Value out of range
+8: [01:57:58] Expected failure: Value out of range
+8: [01:57:58] Expected failure: Value out of range
+8: [01:57:58] Expected failure: Value out of range
+8: [01:57:58]  Test DiscreteValue Vectors 2 ------------------------------
+8: [01:57:58]  Test DiscreteValue Vectors 3 ---------------------------
+8: [01:57:58]  Test DiscreteValue Operations -----------------------------
+8: [01:57:58]  Test DiscreteValue Operations 2 -------------------------- 
+8: [01:57:58]  Test SparseIntVect  ------------------------------------
+8: [01:57:58]  Test SparseIntVect Serialization  --------------------------
+8: [01:57:58]  Test BitVect Serialization  -------------------------------
+8: [01:57:58]  Test BitVect to FPS  -------------------------------
+8: [01:57:58]  Test BitVect to binary string  -------------------------------
+8: [01:57:58]  Test Similarity Measures BitVect -------------------------------
+8: [01:57:58]  Test Similarity Measures SparseBitVect -------------------------------
+8: [01:57:58]  Test BitVect with all ones -------------------------------
+8: [01:57:58]  Test Explicit BitVects: Concatenation Operation  -------------------------------
+8: [01:57:58]  Test bitmap operations  -------------------------------
+8: [01:57:58]  Test bitmaps as properties -------------------------------
+8: [01:57:58]  Test #3944: SparseIntVect copy constructor and assignment operators not clearing existing data-------------------------------
+  5/230 Test   #8: testDataStructs ........................   Passed    0.03 sec
+test 9
+        Start   9: testFPB
+
+9: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/testFPB
+9: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs
+9: Test timeout computed to be: 1500
+  6/230 Test   #9: testFPB ................................   Passed    0.02 sec
+test 10
+        Start  10: testMultiFPB
+
+10: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/testMultiFPB
+10: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs
+10: Test timeout computed to be: 1500
 1: cyclosporine a
 1:      RDKit          2D
 1: 
@@ -23711,14 +23731,6 @@
 1:  10  2  1  0
 1: M  END
 1: 
-  8/230 Test   #2: pyCoordGen .............................***Exception: SegFault  3.87 sec
-
-test 13
-        Start  13: pyDiscreteValueVect
-
-13: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/testDiscreteValueVect.py"
-13: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap
-13: Test timeout computed to be: 1500
 1: github 4845 - nan coordinates but no crash
 1:      RDKit          2D
 1: 
@@ -23811,19 +23823,78 @@
 1:  30 11  1  0
 1: M  END
 1: 
-  9/230 Test   #1: testCoordGen ...........................   Passed    4.32 sec
+  7/230 Test  #10: testMultiFPB ...........................   Passed    0.08 sec
+test 11
+        Start  11: catchDataStructs
+
+11: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/catchDataStructs
+11: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs
+11: Test timeout computed to be: 1500
+11: Randomness seeded to: 1520648891
+11: ===============================================================================
+11: All tests passed (3 assertions in 1 test case)
+11: 
+  8/230 Test  #11: catchDataStructs .......................   Passed    0.02 sec
+test 12
+        Start  12: pyBV
+
+12: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/testBV.py"
+12: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap
+12: Test timeout computed to be: 1500
+3: dynamic boost any:0.794776 s
+  9/230 Test   #1: testCoordGen ...........................   Passed    1.05 sec
+test 13
+        Start  13: pyDiscreteValueVect
+
+13: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/testDiscreteValueVect.py"
+13: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap
+13: Test timeout computed to be: 1500
+3: static RDAny:0.065945 s
+13: ......
+13: ----------------------------------------------------------------------
+13: Ran 6 tests in 0.007s
+13: 
+13: OK
+ 10/230 Test  #13: pyDiscreteValueVect ....................   Passed    0.59 sec
 test 14
         Start  14: pySparseIntVect
 
 14: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/DataStructs/Wrap/testSparseIntVect.py"
 14: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap
 14: Test timeout computed to be: 1500
-13: ......
-13: ----------------------------------------------------------------------
-13: Ran 6 tests in 0.020s
-13: 
-13: OK
- 10/230 Test  #13: pyDiscreteValueVect ....................   Passed    2.34 sec
+3: dynamic RDAny:0.844862 s
+3: static RDValue:3e-06 s
+3: dynamic RDValue:0.103083 s
+3: deleted!
+3: [01:57:59] -------------------------------------
+3: [01:57:59] Testing String Pickle Roundtrips.
+3: [01:57:59] 	done
+3: [01:57:59] -------------------------------------
+3: [01:57:59] Testing conversion of vect to string.
+3: [01:57:59] 	done
+3: [01:57:59] -------------------------------------
+3: [01:57:59] Testing returning const references.
+3: [01:57:59] any cast
+3: [01:57:59] done: 0.001049 300000
+3: [01:57:59] copy
+3: [01:57:59] done: 0.001095 300000
+3: [01:57:59] ref
+3: [01:57:59] done: 0.001072 300000
+3: [01:57:59] dict
+3: [01:57:59] done: 0.005471 300000
+3: [01:57:59] ref with hasVal
+3: [01:57:59] done: 0.003018 300000
+3: [01:57:59] 	done
+3: [01:57:59] -------------------------------------
+3: [01:57:59] Testing dict update.
+3: [01:57:59] 	done
+3: deleted!
+3: deleted!
+3: deleted!
+3: deleted!
+3: deleted!
+3: deleted!
+ 11/230 Test   #3: testDict ...............................   Passed    2.06 sec
 test 15
         Start  15: pyFPB
 
@@ -23832,10 +23903,10 @@
 15: Test timeout computed to be: 1500
 14: .........
 14: ----------------------------------------------------------------------
-14: Ran 9 tests in 0.181s
+14: Ran 9 tests in 0.021s
 14: 
 14: OK
- 11/230 Test  #14: pySparseIntVect ........................   Passed    3.56 sec
+ 12/230 Test  #14: pySparseIntVect ........................   Passed    0.71 sec
 test 16
         Start  16: testTransforms
 
@@ -23850,8 +23921,8 @@
 16: testPointOps2D
 16: ****************************************
 16: test12D
-16: ref1: 1.75282 3.92169  ref2: 0.281017 0.521704 
-16: pt1: 0.0358667 4.52925  pt2: 3.47698 3.32797 
+16: ref1: 2.97405 2.41713  ref2: 0.0821617 0.282524 
+16: pt1: 2.56453 4.19807  pt2: 0.902861 1.04751 
 16: ****************************************
 16: test23D
 16: ****************************************
@@ -23866,7 +23937,7 @@
 16: ****************************************
 16: testFromQuaternion
 16: ****************************************
- 12/230 Test  #16: testTransforms .........................   Passed    0.11 sec
+ 13/230 Test  #16: testTransforms .........................   Passed    0.02 sec
 test 17
         Start  17: testGrid
 
@@ -23890,60 +23961,58 @@
 17: 	---------------------------------
 17: 	 testUniformGridIndexing 
 17: 
- 13/230 Test  #17: testGrid ...............................   Passed    0.52 sec
+ 14/230 Test  #17: testGrid ...............................   Passed    0.11 sec
 test 18
         Start  18: geometryTestsCatch
 
 18: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/geometryTestsCatch
 18: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry
 18: Test timeout computed to be: 1500
-18: Randomness seeded to: 2233027041
+18: Randomness seeded to: 4270289122
 18: ===============================================================================
 18: All tests passed (50 assertions in 5 test cases)
 18: 
- 14/230 Test  #18: geometryTestsCatch .....................   Passed    0.13 sec
+ 15/230 Test  #18: geometryTestsCatch .....................   Passed    0.02 sec
 test 19
         Start  19: testPyGeometry
 
 19: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/Geometry/Wrap/testGeometry.py"
 19: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Geometry/Wrap
 19: Test timeout computed to be: 1500
-3: dynamic boost any:5.27335 s
 15: .........
 15: ----------------------------------------------------------------------
-15: Ran 9 tests in 0.133s
+15: Ran 9 tests in 0.039s
 15: 
 15: OK
-3: static RDAny:0.32299 s
- 15/230 Test  #15: pyFPB ..................................   Passed    3.68 sec
+ 16/230 Test  #15: pyFPB ..................................   Passed    0.71 sec
 test 20
         Start  20: testMatrices
 
 20: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/testMatrices
 20: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics
 20: Test timeout computed to be: 1500
-20: [19:03:04] -----------------------------------------
-20: [19:03:04] Testing RDNumerics: vectors and matrices Code
-20: [19:03:04] ---------------------------------------
-20: [19:03:04] 	 test1Vector
-20: [19:03:04] ---------------------------------------
-20: [19:03:04] 	 test2Matrix
-20: [19:03:04] ---------------------------------------
-20: [19:03:04] 	 test3SquareMatrix
-20: [19:03:04] ---------------------------------------
-20: [19:03:04] 	 test4SymmMatrix
- 16/230 Test  #20: testMatrices ...........................   Passed    0.07 sec
+20: [01:58:00] -----------------------------------------
+20: [01:58:00] Testing RDNumerics: vectors and matrices Code
+20: [01:58:00] ---------------------------------------
+20: [01:58:00] 	 test1Vector
+20: [01:58:00] ---------------------------------------
+20: [01:58:00] 	 test2Matrix
+20: [01:58:00] ---------------------------------------
+20: [01:58:00] 	 test3SquareMatrix
+20: [01:58:00] ---------------------------------------
+20: [01:58:00] 	 test4SymmMatrix
+ 17/230 Test  #20: testMatrices ...........................   Passed    0.01 sec
 test 21
         Start  21: testConrec
 
 21: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics/testConrec
 21: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/Numerics
 21: Test timeout computed to be: 1500
-21: Randomness seeded to: 78864145
+21: Randomness seeded to: 297415366
 21: ===============================================================================
 21: All tests passed (76 assertions in 3 test cases)
 21: 
- 17/230 Test  #21: testConrec .............................   Passed    1.01 sec
+ 18/230 Test  #21: testConrec .............................   Passed    0.09 sec
 test 22
         Start  22: testAlignment
 
@@ -23961,7 +24030,7 @@
 22: ---------------------------------------
 22: 	 testReflection
 22: ---------------------------------------
- 18/230 Test  #22: testAlignment ..........................   Passed    0.13 sec
+ 19/230 Test  #22: testAlignment ..........................   Passed    0.02 sec
 test 23
         Start  23: pyAlignment
 
@@ -23970,11 +24039,11 @@
 23: Test timeout computed to be: 1500
 19: ...........
 19: ----------------------------------------------------------------------
-19: Ran 11 tests in 0.543s
+19: Ran 11 tests in 0.084s
 19: 
 19: OK
 19: Testing Geometry wrapper
- 19/230 Test  #19: testPyGeometry .........................   Passed    4.31 sec
+ 20/230 Test  #19: testPyGeometry .........................   Passed    0.76 sec
 test 24
         Start  24: testOptimizer
 
@@ -23987,24 +24056,30 @@
 24: -------------------------------------
 24: Testing BFGS optimization.
 24:   done
- 20/230 Test  #24: testOptimizer ..........................   Passed    0.09 sec
+ 21/230 Test  #24: testOptimizer ..........................   Passed    0.01 sec
 test 25
         Start  25: ForceFieldsCatch
 
 25: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/ForceFieldsCatch
 25: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField
 25: Test timeout computed to be: 1500
-25: Randomness seeded to: 2063359518
+25: Randomness seeded to: 2932022944
 25: ===============================================================================
 25: All tests passed (20 assertions in 2 test cases)
 25: 
- 21/230 Test  #25: ForceFieldsCatch .......................   Passed    0.36 sec
+ 22/230 Test  #25: ForceFieldsCatch .......................   Passed    0.14 sec
 test 26
         Start  26: testUFFForceField
 
 26: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/UFF/testUFFForceField
 26: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/UFF
 26: Test timeout computed to be: 1500
+23: .....
+23: ----------------------------------------------------------------------
+23: Ran 5 tests in 0.004s
+23: 
+23: OK
+23: Testing Alignment Wrapper code:
 26: -------------------------------------
 26: Unit tests for force field basics.
 26:   done
@@ -24051,19 +24126,7 @@
 26:   done
 26: -------------------------------------
 26: Unit tests for all UFF constraint terms.
-23: .....
-23: ----------------------------------------------------------------------
-23: Ran 5 tests in 0.039s
-23: 
-23: OK
-23: Testing Alignment Wrapper code:
-26:   done
-26: -------------------------------------
-26: Unit tests for copying UFF ForceFields.
-26:   done
-26: -------------------------------------
-26: Unit test for UFF butane scan.
- 22/230 Test  #23: pyAlignment ............................   Passed    3.44 sec
+ 23/230 Test  #23: pyAlignment ............................   Passed    0.71 sec
 test 27
         Start  27: testMMFFForceField
 
@@ -24072,49 +24135,24 @@
 27: Test timeout computed to be: 1500
 27: -------------------------------------
 27: Official MMFF validation suite.
+26:   done
+26: -------------------------------------
+26: Unit tests for copying UFF ForceFields.
+26:   done
+26: -------------------------------------
+26: Unit test for UFF butane scan.
 27: 
 27: Computing MMFF94 energies for /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_dative.sdf...
-3: dynamic RDAny:5.054 s
-3: static RDValue:4e-06 s
 26:   done
- 23/230 Test  #26: testUFFForceField ......................   Passed    4.61 sec
+ 24/230 Test  #26: testUFFForceField ......................   Passed    0.80 sec
 test 28
         Start  28: pyForceFieldConstraints
 
 28: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/ForceField/Wrap/testConstraints.py"
 28: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ForceField/Wrap
 28: Test timeout computed to be: 1500
-3: dynamic RDValue:0.698178 s
-3: deleted!
-3: [19:03:13] -------------------------------------
-3: [19:03:13] Testing String Pickle Roundtrips.
-3: [19:03:13] 	done
-3: [19:03:13] -------------------------------------
-3: [19:03:13] Testing conversion of vect to string.
-3: [19:03:13] 	done
-3: [19:03:13] -------------------------------------
-3: [19:03:13] Testing returning const references.
-3: [19:03:13] any cast
-3: [19:03:13] done: 0.008556 300000
-3: [19:03:13] copy
-3: [19:03:13] done: 0.008609 300000
-3: [19:03:13] ref
-3: [19:03:13] done: 0.008749 300000
-3: [19:03:13] dict
-3: [19:03:13] done: 0.033166 300000
-3: [19:03:13] ref with hasVal
-3: [19:03:13] done: 0.020148 300000
-3: [19:03:13] 	done
-3: [19:03:13] -------------------------------------
-3: [19:03:13] Testing dict update.
-3: [19:03:13] 	done
-3: deleted!
-3: deleted!
-3: deleted!
-3: deleted!
-3: deleted!
-3: deleted!
- 24/230 Test   #3: testDict ...............................   Passed   18.70 sec
+ 25/230 Test  #28: pyForceFieldConstraints ................***Exception: SegFault  0.63 sec
+
 test 29
         Start  29: testDistGeom
 
@@ -24132,7 +24170,7 @@
 29:       1      1      1      0
 29: ***********************************************************
 29: 
- 25/230 Test  #29: testDistGeom ...........................   Passed    0.16 sec
+ 26/230 Test  #29: testDistGeom ...........................   Passed    0.03 sec
 test 30
         Start  30: pyDistGeom
 
@@ -24141,28 +24179,16 @@
 30: Test timeout computed to be: 1500
 30: ......
 30: ----------------------------------------------------------------------
-30: Ran 6 tests in 0.014s
+30: Ran 6 tests in 0.020s
 30: 
 30: OK
- 26/230 Test  #28: pyForceFieldConstraints ................***Exception: SegFault  3.33 sec
-
+ 27/230 Test  #30: pyDistGeom .............................   Passed    0.65 sec
 test 31
         Start  31: graphmolTest1
 
 31: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
 31: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 31: Test timeout computed to be: 1500
- 27/230 Test  #30: pyDistGeom .............................   Passed    2.57 sec
-test 32
-        Start  32: graphmolcpTest
-
-32: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolcpTest
-32: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
-32: Test timeout computed to be: 1500
-32: 
-32: 
-32: 
-32: COPY
 31: Atoms:
 31: 	0 8 O chg: 0  deg: 2 exp: 2 imp: 0 hyb: 
 31: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 
@@ -24181,7 +24207,7 @@
 31: 	4 5->6 order: 3
 31: 	5 6->7 order: 1
 31: 	6 7->8 order: 2
-31: [19:03:16] 
+31: [01:58:03] 
 31: 
 31: ****
 31: Pre-condition Violation
@@ -24193,14 +24219,14 @@
 31:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  2# RDKit::RWMol::addBond(unsigned int, unsigned int, RDKit::Bond::BondType) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-31:  3# 0x009084D6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  4# 0x0090218E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  5# 0xF722E4FA in /lib/arm-linux-gnueabihf/libc.so.6
+31:  3# 0x004514D6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  4# 0x0044B18E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  5# 0xB699A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 31:  6# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 31: ----------
 31: ****
 31: 
-31: [19:03:16] 
+31: [01:58:03] 
 31: 
 31: ****
 31: Pre-condition Violation
@@ -24212,14 +24238,14 @@
 31:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  2# RDKit::RWMol::addBond(unsigned int, unsigned int, RDKit::Bond::BondType) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-31:  3# 0x00908670 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  4# 0x0090218E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  5# 0xF722E4FA in /lib/arm-linux-gnueabihf/libc.so.6
+31:  3# 0x00451670 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  4# 0x0044B18E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  5# 0xB699A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 31:  6# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 31: ----------
 31: ****
 31: 
-31: [19:03:16] 
+31: [01:58:03] 
 31: 
 31: ****
 31: Pre-condition Violation
@@ -24231,14 +24257,14 @@
 31:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  2# RDKit::RWMol::addBond(unsigned int, unsigned int, RDKit::Bond::BondType) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-31:  3# 0x00908712 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  4# 0x0090218E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  5# 0xF722E4FA in /lib/arm-linux-gnueabihf/libc.so.6
+31:  3# 0x00451712 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  4# 0x0044B18E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  5# 0xB699A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 31:  6# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 31: ----------
 31: ****
 31: 
-31: [19:03:16] 
+31: [01:58:03] 
 31: 
 31: ****
 31: Pre-condition Violation
@@ -24250,14 +24276,14 @@
 31:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  2# RDKit::ROMol::addBond(RDKit::Bond*, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-31:  3# 0x0090873E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  4# 0x0090218E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  5# 0xF722E4FA in /lib/arm-linux-gnueabihf/libc.so.6
+31:  3# 0x0045173E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  4# 0x0044B18E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  5# 0xB699A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 31:  6# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 31: ----------
 31: ****
 31: 
-31: [19:03:16] 
+31: [01:58:03] 
 31: 
 31: ****
 31: Pre-condition Violation
@@ -24269,24 +24295,16 @@
 31:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  2# RDKit::ROMol::addBond(RDKit::Bond*, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-31:  3# 0x00908836 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  4# 0x0090218E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  5# 0xF722E4FA in /lib/arm-linux-gnueabihf/libc.so.6
+31:  3# 0x00451836 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  4# 0x0044B18E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  5# 0xB699A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 31:  6# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 31: ----------
 31: ****
 31: 
-31: [19:03:16] Explicit valence for atom # 0 B, 4, is greater than permitted
-31: [19:03:16] Explicit valence for atom # 0 B, 4, is greater than permitted
- 28/230 Test  #32: graphmolcpTest .........................   Passed    0.38 sec
-test 33
-        Start  33: graphmolqueryTest
-
-33: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolqueryTest
-33: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
-33: Test timeout computed to be: 1500
-33: [19:03:17] ---------------------- Test1
-31: [19:03:17] 
+31: [01:58:03] Explicit valence for atom # 0 B, 4, is greater than permitted
+31: [01:58:03] Explicit valence for atom # 0 B, 4, is greater than permitted
+31: [01:58:03] 
 31: 
 31: ****
 31: Post-condition Violation
@@ -24298,20 +24316,20 @@
 31:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  3# 0x00929ADA in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  4# 0x0091437A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  5# 0x0090219A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  6# 0xF722E4FA in /lib/arm-linux-gnueabihf/libc.so.6
+31:  3# 0x00472ADA in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  4# 0x0045D37A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  5# 0x0044B19A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  6# 0xB699A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 31:  7# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 31: ----------
 31: ****
 31: 
-31: [19:03:17] -------------------------------------
-31: [19:03:17]     Test github381: thread-safe initialization of the periodic table
-31: [19:03:17]   done
-31: [19:03:17] -------------------------------------
-31: [19:03:17]     Test github1041: Segfault for atom with no owner (expect some warnings)
-31: [19:03:17] 
+31: [01:58:03] -------------------------------------
+31: [01:58:03]     Test github381: thread-safe initialization of the periodic table
+31: [01:58:03]   done
+31: [01:58:03] -------------------------------------
+31: [01:58:03]     Test github1041: Segfault for atom with no owner (expect some warnings)
+31: [01:58:03] 
 31: 
 31: ****
 31: Pre-condition Violation
@@ -24322,14 +24340,14 @@
 31: Stacktrace:
 31:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-31:  2# 0x00920FA4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  3# 0x009021BE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  4# 0xF722E4FA in /lib/arm-linux-gnueabihf/libc.so.6
+31:  2# 0x00469FA4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  3# 0x0044B1BE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  4# 0xB699A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 31:  5# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 31: ----------
 31: ****
 31: 
-31: [19:03:17] 
+31: [01:58:03] 
 31: 
 31: ****
 31: Pre-condition Violation
@@ -24340,17 +24358,17 @@
 31: Stacktrace:
 31:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-31:  2# 0x0092120A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  3# 0x009021BE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  4# 0xF722E4FA in /lib/arm-linux-gnueabihf/libc.so.6
+31:  2# 0x0046A20A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  3# 0x0044B1BE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  4# 0xB699A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 31:  5# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 31: ----------
 31: ****
 31: 
-31: [19:03:17]   done
-31: [19:03:17] -------------------------------------
-31: [19:03:17]     Test github1041: Segfault for atom with no owner (expect some warnings)
-31: [19:03:17] 
+31: [01:58:03]   done
+31: [01:58:03] -------------------------------------
+31: [01:58:03]     Test github1041: Segfault for atom with no owner (expect some warnings)
+31: [01:58:03] 
 31: 
 31: ****
 31: Pre-condition Violation
@@ -24361,14 +24379,14 @@
 31: Stacktrace:
 31:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-31:  2# 0x00920FA4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  3# 0x009021C2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  4# 0xF722E4FA in /lib/arm-linux-gnueabihf/libc.so.6
+31:  2# 0x00469FA4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  3# 0x0044B1C2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  4# 0xB699A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 31:  5# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 31: ----------
 31: ****
 31: 
-31: [19:03:17] 
+31: [01:58:03] 
 31: 
 31: ****
 31: Pre-condition Violation
@@ -24379,53 +24397,81 @@
 31: Stacktrace:
 31:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 31:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-31:  2# 0x0092120A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  3# 0x009021C2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
-31:  4# 0xF722E4FA in /lib/arm-linux-gnueabihf/libc.so.6
+31:  2# 0x0046A20A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  3# 0x0044B1C2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTest1
+31:  4# 0xB699A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 31:  5# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 31: ----------
 31: ****
 31: 
-31: [19:03:17]   done
-31: [19:03:17] -------------------------------------
-31: [19:03:17]     Test github1453: RWMol.clear() should reset the numBonds count.
-31: [19:03:17]   done
-31: [19:03:17] -------------------------------------
-31: [19:03:17]     Test range-based for loops.
-31: [19:03:17]   done
-31: [19:03:17] -------------------------------------
-31: [19:03:17]     Test github1642: Atom index type is too low for big molecules.
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test2
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test3
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test4
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test5
-33: [19:03:17] Done!
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test issue 2892580
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test github issue 53: query molecules not matching [R]
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test queries using qualifiers instead of ==
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test Github issue 165: radicals not used in atom-atom matching
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test extra atom queries
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test extra bond queries
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test num heteroatom neighbor queries
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test atom type queries
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Test Github #2471: dummy atom queries are flagged as complex
-33: [19:03:17] Done!
-33: [19:03:17] ---------------------- Testing hasBondTypeQuery() and hasComplexBondTypeQuery()
-33: [19:03:17] Done!
- 29/230 Test  #33: graphmolqueryTest ......................   Passed    0.47 sec
+31: [01:58:03]   done
+31: [01:58:03] -------------------------------------
+31: [01:58:03]     Test github1453: RWMol.clear() should reset the numBonds count.
+31: [01:58:03]   done
+31: [01:58:03] -------------------------------------
+31: [01:58:03]     Test range-based for loops.
+31: [01:58:03]   done
+31: [01:58:03] -------------------------------------
+31: [01:58:03]     Test github1642: Atom index type is too low for big molecules.
+27: Checking against /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
+27: All 191 tests passed
+12: ..................
+12: ----------------------------------------------------------------------
+12: Ran 18 tests in 8.981s
+12: 
+12: OK
+ 28/230 Test  #12: pyBV ...................................   Passed    9.66 sec
+test 32
+        Start  32: graphmolcpTest
+
+32: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolcpTest
+32: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
+32: Test timeout computed to be: 1500
+27: 
+27: Computing MMFF94 energies for /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.sdf...
+32: 
+32: 
+32: 
+32: COPY
+ 29/230 Test  #32: graphmolcpTest .........................   Passed    0.05 sec
+test 33
+        Start  33: graphmolqueryTest
+
+33: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolqueryTest
+33: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
+33: Test timeout computed to be: 1500
+33: [01:58:08] ---------------------- Test1
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test2
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test3
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test4
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test5
+33: [01:58:08] Done!
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test issue 2892580
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test github issue 53: query molecules not matching [R]
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test queries using qualifiers instead of ==
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test Github issue 165: radicals not used in atom-atom matching
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test extra atom queries
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test extra bond queries
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test num heteroatom neighbor queries
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test atom type queries
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Test Github #2471: dummy atom queries are flagged as complex
+33: [01:58:08] Done!
+33: [01:58:08] ---------------------- Testing hasBondTypeQuery() and hasComplexBondTypeQuery()
+33: [01:58:08] Done!
+ 30/230 Test  #33: graphmolqueryTest ......................   Passed    0.06 sec
 test 34
         Start  34: graphmolMolOpsTest
 
@@ -24436,18 +24482,18 @@
 34: 1 1 1 
 34: 2 1 0.75 
 34: path: 2
-34: [19:03:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 10 ignored
-34: [19:03:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 10 ignored
-34: [19:03:18] Explicit valence for atom # 0 B, 5, is greater than permitted
-34: [19:03:18] Explicit valence for atom # 1 C, 5, is greater than permitted
-34: [19:03:18] Explicit valence for atom # 1 C, 5, is greater than permitted
-34: [19:03:18] Explicit valence for atom # 1 C, 5, is greater than permitted
-34: [19:03:18] Explicit valence for atom # 1 Si, 7, is greater than permitted
+34: [01:58:08] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 10 ignored
+34: [01:58:08] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 10 ignored
+34: [01:58:08] Explicit valence for atom # 0 B, 5, is greater than permitted
+34: [01:58:08] Explicit valence for atom # 1 C, 5, is greater than permitted
+34: [01:58:08] Explicit valence for atom # 1 C, 5, is greater than permitted
+34: [01:58:08] Explicit valence for atom # 1 C, 5, is greater than permitted
+34: [01:58:08] Explicit valence for atom # 1 Si, 7, is greater than permitted
 34: smi: Cc1ccc(S(=O)(=O)/N=C2\CC(=N\C(C)(C)C)/C2=N\C(C)(C)C)cc1
-34: [19:03:19] non-ring atom 0 marked aromatic
-34: [19:03:19] non-ring atom 0 marked aromatic
-34: [19:03:19] Conflicting single bond directions around double bond at index 17.
-34: [19:03:19]   BondStereo set to STEREONONE and single bond directions set to NONE.
+34: [01:58:08] non-ring atom 0 marked aromatic
+34: [01:58:08] non-ring atom 0 marked aromatic
+34: [01:58:08] Conflicting single bond directions around double bond at index 17.
+34: [01:58:08]   BondStereo set to STEREONONE and single bond directions set to NONE.
 34: starting ring finding
 34: done
 34: starting ring finding
@@ -24464,26 +24510,26 @@
 34: starting ring finding
 34: done
 34: smiles: CC[C@]1(C(=O)c([nH])n)CC[C@](C)(O)CC1
-34: [19:03:21] WARNING: not removing hydrogen atom with dummy atom neighbors
+34: [01:58:08] WARNING: not removing hydrogen atom with dummy atom neighbors
 34: -------------------------------
-34: [19:03:21] Explicit valence for atom # 0 N, 4, is greater than permitted
-34: [19:03:21] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-34: [19:03:21] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
-34: [19:03:21] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-34: [19:03:21] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
-34: [19:03:21] WARNING: not removing hydrogen atom with dummy atom neighbors
-34: [19:03:27] Maximum BFS search size exceeded.
+34: [01:58:08] Explicit valence for atom # 0 N, 4, is greater than permitted
+34: [01:58:08] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+34: [01:58:08] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
+34: [01:58:08] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+34: [01:58:08] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
+34: [01:58:08] WARNING: not removing hydrogen atom with dummy atom neighbors
+34: [01:58:09] Maximum BFS search size exceeded.
 34: This is likely due to a highly symmetric fused ring system.
-34: [19:03:32] Maximum BFS search size exceeded.
+34: [01:58:10] Maximum BFS search size exceeded.
 34: This is likely due to a highly symmetric fused ring system.
 34: F/C=C/Cl
 34: [H]/C(F)=C(/[H])Cl
 34: F/C=C/Cl
 34: F/C=C/Cl
 34: C/C(F)=C(/C)Cl
-34: [19:03:32] -----------------------
+34: [01:58:10] -----------------------
 34:  Testing isRingFused 
- 30/230 Test  #34: graphmolMolOpsTest .....................   Passed   15.38 sec
+ 31/230 Test  #34: graphmolMolOpsTest .....................   Passed    2.30 sec
 test 35
         Start  35: graphmoltestChirality
 
@@ -24493,32 +24539,32 @@
 35: --------------------------
 35: --------------------------
 35: C/C=C/C(C)Cl
-35: [19:03:33] Conflicting single bond directions around double bond at index 2.
-35: [19:03:33]   BondStereo set to STEREONONE and single bond directions set to NONE.
-35: [19:03:33] Conflicting single bond directions around double bond at index 4.
-35: [19:03:33]   BondStereo set to STEREONONE and single bond directions set to NONE.
-35: [19:03:33] Conflicting single bond directions around double bond at index 15.
-35: [19:03:33]   BondStereo set to STEREONONE and single bond directions set to NONE.
-35: [19:03:33] Conflicting single bond directions around double bond at index 2.
-35: [19:03:33]   BondStereo set to STEREONONE and single bond directions set to NONE.
-35: [19:03:33] Conflicting single bond directions around double bond at index 1.
-35: [19:03:33]   BondStereo set to STEREONONE and single bond directions set to NONE.
+35: [01:58:10] Conflicting single bond directions around double bond at index 2.
+35: [01:58:10]   BondStereo set to STEREONONE and single bond directions set to NONE.
+35: [01:58:10] Conflicting single bond directions around double bond at index 4.
+35: [01:58:10]   BondStereo set to STEREONONE and single bond directions set to NONE.
+35: [01:58:10] Conflicting single bond directions around double bond at index 15.
+35: [01:58:10]   BondStereo set to STEREONONE and single bond directions set to NONE.
+35: [01:58:10] Conflicting single bond directions around double bond at index 2.
+35: [01:58:10]   BondStereo set to STEREONONE and single bond directions set to NONE.
+35: [01:58:10] Conflicting single bond directions around double bond at index 1.
+35: [01:58:10]   BondStereo set to STEREONONE and single bond directions set to NONE.
 35: --------------------------------------------------
- 31/230 Test  #35: graphmoltestChirality ..................   Passed    1.04 sec
+ 32/230 Test  #35: graphmoltestChirality ..................   Passed    0.21 sec
 test 36
         Start  36: graphmoltestPickler
 
 36: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmoltestPickler
 36: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 36: Test timeout computed to be: 1500
-36: [19:03:33] -------------------------------------
-36: [19:03:33] Testing String Pickle Roundtrips.
-36: [19:03:34] 	done
-36: [19:03:34] -------------------------------------
-36: [19:03:34] Testing reading existing pickle file (v2).
-36: [19:03:35] 	done
-36: [19:03:35] -------------------------------------
-36: [19:03:35] Testing combining molecules using pickles.
+36: [01:58:10] -------------------------------------
+36: [01:58:10] Testing String Pickle Roundtrips.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing reading existing pickle file (v2).
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing combining molecules using pickles.
 36: Atoms:
 36: 	0 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: SP3
 36: 	1 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: SP3
@@ -24535,37 +24581,37 @@
 36: 	4 4->5 order: 1
 36: 	5 5->6 order: 1
 36: 	6 6->3 order: 1
-36: [19:03:35] 	done
-36: [19:03:35] -------------------------------------
-36: [19:03:35] Testing Issue164: Roundtrip Pickle Failure.
-36: [19:03:35] 	done
-36: [19:03:35] -------------------------------------
-36: [19:03:35] Testing Issue219: Pickle Failure with Conformations.
-36: [19:03:35] 	done
-36: [19:03:35] -------------------------------------
-36: [19:03:35] Testing Issue220: Pickle problems with bond stereochemistry.
-36: [19:03:35] 	done
-36: [19:03:35] -------------------------------------
-36: [19:03:35] Testing query serialization.
-36: [19:03:35] C=[$(C=O)]
-36: [19:03:35] S(=O)(=O)-[C&H2][F,Br,I,Cl] S(=O)(=O)-[C&H2][F,Br,I,Cl]
-36: [19:03:35] 	done
-36: [19:03:35] -------------------------------------
-36: [19:03:35] Testing radical handling in pickles.
-36: [19:03:35] 	done
-36: [19:03:35] 	done
-36: [19:03:35] -------------------------------------
-36: [19:03:35] Testing sf.net issue 2788233.
-36: [19:03:35] 	done
-36: [19:03:35] -------------------------------------
-36: [19:03:35] Testing sf.net issue 3202580.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing Issue164: Roundtrip Pickle Failure.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing Issue219: Pickle Failure with Conformations.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing Issue220: Pickle problems with bond stereochemistry.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing query serialization.
+36: [01:58:11] C=[$(C=O)]
+36: [01:58:11] S(=O)(=O)-[C&H2][F,Br,I,Cl] S(=O)(=O)-[C&H2][F,Br,I,Cl]
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing radical handling in pickles.
+36: [01:58:11] 	done
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing sf.net issue 2788233.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing sf.net issue 3202580.
 36:   mass! 13.0034
-36: [19:03:35] 	done
-36: [19:03:35] -------------------------------------
-36: [19:03:35] Testing sf.net issue 3316407.
-36: [19:03:35] 	done
-36: [19:03:35] -------------------------------------
-36: [19:03:35] Testing sf.net issue 3496759.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing sf.net issue 3316407.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing sf.net issue 3496759.
 36: smi match: *C *C
 36: smi match: **=* **=*
 36: smi match: [N-]=[N+]=NC=O [N-]=[N+]=NC=O
@@ -24992,183 +25038,182 @@
 36: smi match: * *
 36: smi match: ***** *****
 36: smi match: NC(N)=O NC(N)=O
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing sf.net issue 280.
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing sf.net issue 285.
-36: [19:03:38] 	done
-36: [19:03:38] 	done
-36: [19:03:38] 	done
-36: [19:03:38] 	done
-36: [19:03:38] 	done
-36: [19:03:38] 	done
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing Github2441: Add RDProps interface to Conformers.
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing Issue2510: Pickle Confs as double.
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing Github #2465: Negative atom-map numbers cause depickling to fail.
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing loading pickled mols with conformers
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing conformer reading/writing options
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing property reading options
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing property reading options
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing boost::serialization integration
-36: [19:03:38] 	done
-36: [19:03:38] -------------------------------------
-36: [19:03:38] Testing github issue 6036
- 32/230 Test  #36: graphmoltestPickler ....................   Passed    4.36 sec
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing sf.net issue 280.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing sf.net issue 285.
+36: [01:58:11] 	done
+36: [01:58:11] 	done
+36: [01:58:11] 	done
+36: [01:58:11] 	done
+36: [01:58:11] 	done
+36: [01:58:11] 	done
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing Github2441: Add RDProps interface to Conformers.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing Issue2510: Pickle Confs as double.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing Github #2465: Negative atom-map numbers cause depickling to fail.
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing loading pickled mols with conformers
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing conformer reading/writing options
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing property reading options
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing property reading options
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing boost::serialization integration
+36: [01:58:11] 	done
+36: [01:58:11] -------------------------------------
+36: [01:58:11] Testing github issue 6036
+ 33/230 Test  #36: graphmoltestPickler ....................   Passed    0.79 sec
 test 37
         Start  37: graphmoltestPicklerGlobalSetting
 
 37: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmoltestPicklerGlobalSetting
 37: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 37: Test timeout computed to be: 1500
-37: [19:03:38] 	done
- 33/230 Test  #37: graphmoltestPicklerGlobalSetting .......   Passed    0.33 sec
+37: [01:58:11] 	done
+ 34/230 Test  #37: graphmoltestPicklerGlobalSetting .......   Passed    0.05 sec
 test 38
         Start  38: graphmolIterTest
 
 38: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolIterTest
 38: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 38: Test timeout computed to be: 1500
- 34/230 Test  #38: graphmolIterTest .......................   Passed    0.41 sec
+ 35/230 Test  #38: graphmolIterTest .......................   Passed    0.05 sec
 test 39
         Start  39: hanoiTest
 
 39: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/hanoiTest
 39: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 39: Test timeout computed to be: 1500
-39: [19:03:39] Testing the hanoi sort
-39: [19:03:39] populating vectors
-39: [19:03:43] sorting (hanoi sort) vectors
+39: [01:58:11] Testing the hanoi sort
+39: [01:58:11] populating vectors
+39: [01:58:12] sorting (hanoi sort) vectors
 27: Checking against /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
 27: All 191 tests passed
 27: 
-27: Computing MMFF94 energies for /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.sdf...
-12: ..................
-12: ----------------------------------------------------------------------
-12: Ran 18 tests in 60.213s
-12: 
-12: OK
- 35/230 Test  #12: pyBV ...................................   Passed   63.25 sec
+27: Computing MMFF94 energies for /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_dative.smi...
+39: [01:58:15] done: 500000
+39: [01:58:15] Done
+39: [01:58:15] Testing hanoi with a functor.
+39: [01:58:15] Done
+39: [01:58:15] Testing basic partition refinement.
+39: [01:58:15] Done
+39: [01:58:15] Testing partition refinement with neighbors.
+39: [01:58:15] Done
+39: [01:58:15] testing canonicalization via tie breaking.
+39: [01:58:15] Done
+39: [01:58:15] testing canonicalization using the wrapper.
+39: [01:58:16] Done
+39: [01:58:16] testing some specific ordering problems
+39: [01:58:16] Finished
+39: [01:58:16] testing chiral invariants.
+39: [01:58:16] Finished
+39: [01:58:16] testing unique ranks in w.r.t. renumbering.
+39: [01:58:16] Finished
+39: [01:58:16] testing mol fragments.
+39: [01:58:16] Finished
+39: [01:58:16] testing protein round-tripping.
+39: [01:58:17] Finished
+39: [01:58:17] testing stability w.r.t. renumbering.
+39: [01:58:17] Finished
+39: [01:58:17] testing smiles round-tripping.
+39: [01:58:17] Finished
+39: [01:58:17] testing github #1567: Non-canonical result from MolFragmentToSmiles()
+39: [01:58:17] Finished
+ 36/230 Test  #39: hanoiTest ..............................   Passed    5.79 sec
 test 40
         Start  40: graphmolMemTest1
 
 40: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolMemTest1
 40: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 40: Test timeout computed to be: 1500
- 36/230 Test  #40: graphmolMemTest1 .......................   Passed    0.09 sec
+ 37/230 Test  #40: graphmolMemTest1 .......................   Passed    0.03 sec
 test 41
         Start  41: resMolSupplierTest
 
 41: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/resMolSupplierTest
 41: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 41: Test timeout computed to be: 1500
-39: [19:04:12] done: 500000
-39: [19:04:12] Done
-39: [19:04:13] Testing hanoi with a functor.
-39: [19:04:13] Done
-39: [19:04:13] Testing basic partition refinement.
-39: [19:04:13] Done
-39: [19:04:13] Testing partition refinement with neighbors.
-39: [19:04:13] Done
-39: [19:04:13] testing canonicalization via tie breaking.
-39: [19:04:13] Done
-39: [19:04:13] testing canonicalization using the wrapper.
-39: [19:04:13] Done
-39: [19:04:13] testing some specific ordering problems
-39: [19:04:13] Finished
-39: [19:04:13] testing chiral invariants.
-39: [19:04:13] Finished
-39: [19:04:13] testing unique ranks in w.r.t. renumbering.
-39: [19:04:14] Finished
-39: [19:04:14] testing mol fragments.
-39: [19:04:14] Finished
-39: [19:04:14] testing protein round-tripping.
-39: [19:04:23] Finished
-39: [19:04:23] testing stability w.r.t. renumbering.
-39: [19:04:24] Finished
-39: [19:04:24] testing smiles round-tripping.
-39: [19:04:26] Finished
-39: [19:04:26] testing github #1567: Non-canonical result from MolFragmentToSmiles()
-39: [19:04:26] Finished
- 37/230 Test  #39: hanoiTest ..............................   Passed   48.04 sec
+27: Checking against /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
+27: All 191 tests passed
+27: 
+27: Computing MMFF94 energies for /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.smi...
+ 38/230 Test  #41: resMolSupplierTest .....................   Passed   10.54 sec
 test 42
         Start  42: molBundleTest
 
 42: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/molBundleTest
 42: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 42: Test timeout computed to be: 1500
- 38/230 Test  #42: molBundleTest ..........................   Passed    0.34 sec
+ 39/230 Test  #42: molBundleTest ..........................   Passed    0.09 sec
 test 43
         Start  43: testSGroup
 
 43: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/testSGroup
 43: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 43: Test timeout computed to be: 1500
- 39/230 Test  #43: testSGroup .............................   Passed    0.61 sec
+ 40/230 Test  #43: testSGroup .............................   Passed    0.26 sec
 test 44
         Start  44: test-valgrind
 
 44: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/test-valgrind
 44: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 44: Test timeout computed to be: 1500
- 40/230 Test  #44: test-valgrind ..........................   Passed    0.35 sec
+ 41/230 Test  #44: test-valgrind ..........................   Passed    0.11 sec
 test 45
         Start  45: graphmolTestsCatch
 
 45: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
 45: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 45: Test timeout computed to be: 1500
-45: Randomness seeded to: 3635401452
-45: [19:04:28] WARNING: not removing hydrogen atom without neighbors
-45: [19:04:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-45: [19:04:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-45: [19:04:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-45: [19:04:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-45: [19:04:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-45: [19:04:28] Explicit valence for atom # 1 N, 5, is greater than permitted
-45: [19:04:28] Explicit valence for atom # 1 N, 6, is greater than permitted
-45: [19:04:28] Explicit valence for atom # 1 N, 5, is greater than permitted
-45: [19:04:28] Explicit valence for atom # 1 N, 5, is greater than permitted
-45: [19:04:28] Explicit valence for atom # 2 O, 3, is greater than permitted
-45: [19:04:28] Explicit valence for atom # 2 O, 3, is greater than permitted
-45: [19:04:28] non-ring atom 2 marked aromatic
-45: [19:04:28] non-ring atom 2 marked aromatic
-45: [19:04:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-45: [19:04:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-45: [19:04:28] Can't kekulize mol.  Unkekulized atoms: 1 2 3
-45: [19:04:28] Can't kekulize mol.  Unkekulized atoms: 1 2 3
-45: [19:04:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2
-45: [19:04:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2
-45: [19:04:28] Explicit valence for atom # 1 O, 3, is greater than permitted
-45: [19:04:28] Explicit valence for atom # 4 F, 2, is greater than permitted
-45: [19:04:28] Can't kekulize mol.  Unkekulized atoms: 6 7 8
-45: [19:04:28] Explicit valence for atom # 1 C, 5, is greater than permitted
-45: [19:04:28] WARNING: not removing hydrogen atom with dummy atom neighbors
-45: [19:04:28] WARNING: not removing hydrogen atom with dummy atom neighbors
-45: [19:04:28] WARNING: not removing hydrogen atom with wedged bond
-45: [19:04:28] WARNING: not removing hydrogen atom without neighbors
-45: [19:04:28] WARNING: not removing hydrogen atom without neighbors
-45: [19:04:29] WARNING: not removing hydrogen atom without neighbors
-45: [19:04:29] WARNING: not removing hydrogen atom without neighbors
-45: [19:04:29] Unreasonable formal charge on atom # 0.
-45: [19:04:29] 
+45: Randomness seeded to: 3041068970
+45: [01:58:28] WARNING: not removing hydrogen atom without neighbors
+45: [01:58:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+45: [01:58:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+45: [01:58:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+45: [01:58:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+45: [01:58:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+45: [01:58:28] Explicit valence for atom # 1 N, 5, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 1 N, 6, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 1 N, 5, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 1 N, 5, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 2 O, 3, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 2 O, 3, is greater than permitted
+45: [01:58:28] non-ring atom 2 marked aromatic
+45: [01:58:28] non-ring atom 2 marked aromatic
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 1 2 3
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 1 2 3
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2
+45: [01:58:28] Explicit valence for atom # 1 O, 3, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 4 F, 2, is greater than permitted
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 6 7 8
+45: [01:58:28] Explicit valence for atom # 1 C, 5, is greater than permitted
+45: [01:58:28] WARNING: not removing hydrogen atom with dummy atom neighbors
+45: [01:58:28] WARNING: not removing hydrogen atom with dummy atom neighbors
+45: [01:58:28] WARNING: not removing hydrogen atom with wedged bond
+45: [01:58:28] WARNING: not removing hydrogen atom without neighbors
+45: [01:58:28] WARNING: not removing hydrogen atom without neighbors
+45: [01:58:28] WARNING: not removing hydrogen atom without neighbors
+45: [01:58:28] WARNING: not removing hydrogen atom without neighbors
+45: [01:58:28] Unreasonable formal charge on atom # 0.
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25180,19 +25225,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::getAtomDegree(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008A9FAC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BAFAC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25204,19 +25249,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::getAtomDegree(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA010 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB010 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25228,19 +25273,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::getAtomDegree(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA07E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB07E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25252,19 +25297,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::getAtomNeighbors(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA12E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB12E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25276,19 +25321,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::getAtomNeighbors(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA194 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB194 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25300,19 +25345,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::getAtomNeighbors(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA204 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB204 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25324,19 +25369,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::getAtomBonds(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA89E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB89E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25348,19 +25393,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::getAtomBonds(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA310 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB310 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25372,19 +25417,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::getAtomBonds(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA380 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB380 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25396,19 +25441,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::addAtom(RDKit::Atom*, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA88C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB88C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25420,19 +25465,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::addAtom(RDKit::Atom*, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA51A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB51A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25444,23 +25489,23 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::ROMol::addBond(RDKit::Bond*, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x008AA878 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x004BB878 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-45: [19:04:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-45: [19:04:29] WARNING: not removing hydrogen atom without neighbors
-45: [19:04:29] Explicit valence for atom # 1 F greater than permitted
-45: [19:04:29] 
+45: [01:58:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+45: [01:58:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+45: [01:58:28] WARNING: not removing hydrogen atom without neighbors
+45: [01:58:28] Explicit valence for atom # 1 F greater than permitted
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25472,19 +25517,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::Atom::setQuery(Queries::Query<int, RDKit::Atom const*, true>*) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x0086B36C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x0047C36C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25496,19 +25541,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::Atom::expandQuery(Queries::Query<int, RDKit::Atom const*, true>*, Queries::CompositeQueryType, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x0086B3D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x0047C3D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25520,19 +25565,19 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::Bond::setQuery(Queries::Query<int, RDKit::Bond const*, true>*) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x0086B0C2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x0047C0C2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] 
+45: [01:58:28] 
 45: 
 45: ****
 45: Pre-condition Violation
@@ -25544,241 +25589,253 @@
 45:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 45:  2# RDKit::Bond::expandQuery(Queries::Query<int, RDKit::Bond const*, true>*, Queries::CompositeQueryType, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-45:  3# 0x0086B12A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  4# 0x008DF5B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  5# 0x008DFC20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  6# 0x008DFF50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  7# 0x008C1480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  8# 0x008C1854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45:  9# 0x008613FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
-45: 10# 0xF72BB4FA in /lib/arm-linux-gnueabihf/libc.so.6
+45:  3# 0x0047C12A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  4# 0x004F05B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  5# 0x004F0C20 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  6# 0x004F0F50 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  7# 0x004D2480 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  8# 0x004D2854 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45:  9# 0x004723FE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolTestsCatch
+45: 10# 0xB68F54FA in /lib/arm-linux-gnueabihf/libc.so.6
 45: 11# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 45: ----------
 45: ****
 45: 
-45: [19:04:29] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-45: [19:04:29] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-45: [19:04:29] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
-45: [19:04:29] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
-45: [19:04:29] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-45: [19:04:29] Unusual charge on atom 0 number of radical electrons set to zero
-45: [19:04:29] Unusual charge on atom 0 number of radical electrons set to zero
-45: [19:04:29] Unusual charge on atom 0 number of radical electrons set to zero
-45: [19:04:29] non-ring atom 0 marked aromatic
-45: [19:04:29] non-ring atom 0 marked aromatic
-45: [19:04:29] Explicit valence for atom # 1 C, 5, is greater than permitted
-45: [19:04:29] Explicit valence for atom # 9 C, 5, is greater than permitted
-45: [19:04:29] Explicit valence for atom # 3 N, 4, is greater than permitted
-45: [19:04:29] Explicit valence for atom # 15 C, 5, is greater than permitted
-45: [19:04:29] Explicit valence for atom # 11 C, 5, is greater than permitted
-45: [19:04:29] Explicit valence for atom # 9 C, 5, is greater than permitted
-45: [19:04:29] Explicit valence for atom # 9 C, 5, is greater than permitted
-45: [19:04:29] Explicit valence for atom # 9 C, 6, is greater than permitted
-45: [19:04:29] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-45: [19:04:29] Can't kekulize mol.  Unkekulized atoms: 7
-45: [19:04:29] Can't kekulize mol.  Unkekulized atoms: 3
-45: [19:04:29] Can't kekulize mol.  Unkekulized atoms: 3 7
-45: [19:04:29] Can't kekulize mol.  Unkekulized atoms: 3 7
-45: [19:04:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-45: [19:04:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-45: [19:04:30] Explicit valence for atom # 1 O, 3, is greater than permitted
-45: [19:04:30] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
-45: [19:04:30] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
-45: [19:04:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-45: [19:04:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-45: [19:04:30] Invalid value for molAttachPoint: 4 on atom 1. Not expanding this atttachment point.
-45: [19:04:30] Invalid value for _fromAttachPoint: -1 on atom 0. Not collapsing this atom
-45: [19:04:30] Invalid value for _fromAttachPoint: 4 on atom 0. Not collapsing this atom
-45: [19:04:30] non-ring atom 0 marked aromatic
-45: [19:04:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-45: [19:04:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-45: [19:04:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-45: [19:04:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-45: [19:04:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-45: [19:04:31] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-45: [19:04:31] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-45: [19:04:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-45: [19:04:31] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-45: [19:04:31] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-45: [19:04:31] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-45: [19:04:31] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-45: [19:04:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-45: [19:04:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-45: [19:04:33] Explicit valence for atom # 0 Al, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 0 Al, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 1 Si, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 1 Si, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 0 P, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 0 P, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 0 P, 7, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 0 P, 7, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 1 As, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 1 As, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 1 As, 7, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 1 As, 7, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 0 Sb, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 0 Sb, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 0 Sb, 7, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 0 Sb, 7, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 1 Bi, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 1 Bi, 6, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 1 Bi, 8, is greater than permitted
-45: [19:04:33] Explicit valence for atom # 1 Bi, 8, is greater than permitted
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+45: [01:58:28] Unusual charge on atom 0 number of radical electrons set to zero
+45: [01:58:28] Unusual charge on atom 0 number of radical electrons set to zero
+45: [01:58:28] Unusual charge on atom 0 number of radical electrons set to zero
+45: [01:58:28] non-ring atom 0 marked aromatic
+45: [01:58:28] non-ring atom 0 marked aromatic
+45: [01:58:28] Explicit valence for atom # 1 C, 5, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 9 C, 5, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 3 N, 4, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 15 C, 5, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 11 C, 5, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 9 C, 5, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 9 C, 5, is greater than permitted
+45: [01:58:28] Explicit valence for atom # 9 C, 6, is greater than permitted
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 7
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 3
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 3 7
+45: [01:58:28] Can't kekulize mol.  Unkekulized atoms: 3 7
+45: [01:58:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+45: [01:58:28] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+45: [01:58:29] Explicit valence for atom # 1 O, 3, is greater than permitted
+45: [01:58:29] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
+45: [01:58:29] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
+45: [01:58:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+45: [01:58:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+45: [01:58:29] Invalid value for molAttachPoint: 4 on atom 1. Not expanding this atttachment point.
+45: [01:58:29] Invalid value for _fromAttachPoint: -1 on atom 0. Not collapsing this atom
+45: [01:58:29] Invalid value for _fromAttachPoint: 4 on atom 0. Not collapsing this atom
+45: [01:58:29] non-ring atom 0 marked aromatic
+45: [01:58:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+45: [01:58:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+45: [01:58:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+45: [01:58:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+45: [01:58:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+45: [01:58:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+45: [01:58:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+45: [01:58:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+45: [01:58:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+45: [01:58:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+45: [01:58:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+45: [01:58:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+45: [01:58:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+45: [01:58:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+45: [01:58:29] Explicit valence for atom # 0 Al, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 0 Al, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 1 Si, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 1 Si, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 0 P, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 0 P, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 0 P, 7, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 0 P, 7, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 1 As, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 1 As, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 1 As, 7, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 1 As, 7, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 0 Sb, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 0 Sb, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 0 Sb, 7, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 0 Sb, 7, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 1 Bi, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 1 Bi, 6, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 1 Bi, 8, is greater than permitted
+45: [01:58:29] Explicit valence for atom # 1 Bi, 8, is greater than permitted
 45: ===============================================================================
 45: All tests passed (4464 assertions in 106 test cases)
 45: 
- 41/230 Test  #45: graphmolTestsCatch .....................   Passed    5.02 sec
+ 42/230 Test  #45: graphmolTestsCatch .....................   Passed    1.20 sec
 test 46
         Start  46: graphmolOrganometallicsCatch
 
 46: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolOrganometallicsCatch
 46: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 46: Test timeout computed to be: 1500
-46: Randomness seeded to: 3526468153
+46: Randomness seeded to: 4159991652
 46: ===============================================================================
 46: All tests passed (62 assertions in 6 test cases)
 46: 
- 42/230 Test  #46: graphmolOrganometallicsCatch ...........   Passed    0.85 sec
+ 43/230 Test  #46: graphmolOrganometallicsCatch ...........   Passed    0.38 sec
 test 47
         Start  47: graphmolSGroupCatch
 
 47: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolSGroupCatch
 47: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 47: Test timeout computed to be: 1500
-47: Randomness seeded to: 2149681476
+47: Randomness seeded to: 2304939476
 47: ===============================================================================
 47: All tests passed (136 assertions in 8 test cases)
 47: 
- 43/230 Test  #47: graphmolSGroupCatch ....................   Passed    0.39 sec
+ 44/230 Test  #47: graphmolSGroupCatch ....................   Passed    0.17 sec
 test 48
         Start  48: graphmolAdjustQueryCatch
 
 48: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/graphmolAdjustQueryCatch
 48: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 48: Test timeout computed to be: 1500
-48: Randomness seeded to: 1975972614
+48: Randomness seeded to: 954291205
 48: ===============================================================================
 48: All tests passed (281 assertions in 10 test cases)
 48: 
- 44/230 Test  #48: graphmolAdjustQueryCatch ...............   Passed    0.80 sec
+ 45/230 Test  #48: graphmolAdjustQueryCatch ...............   Passed    0.32 sec
 test 49
         Start  49: chiralityTestsCatch
 
 49: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/chiralityTestsCatch
 49: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 49: Test timeout computed to be: 1500
-27: Checking against /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
-49: Randomness seeded to: 1753813398
-49: [19:04:36]  unable to set wavy bonds for double bonds: 3
-49: [19:04:36] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
-49: [19:04:36] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
-49: [19:04:37] Warning: ambiguous stereochemistry - zero-length (or near zero-length) bond - at atom 1 ignored.
-49: [19:04:37] Warning: ambiguous stereochemistry - zero-length (or near zero-length) bond - at atom 1 ignored.
-49: [19:04:37] Warning: ambiguous stereochemistry - overlapping neighbors  - at atom 2 ignored
+49: Randomness seeded to: 3332824603
+49: [01:58:30]  unable to set wavy bonds for double bonds: 3
+49: [01:58:30] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
+49: [01:58:30] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
+49: [01:58:31] Warning: ambiguous stereochemistry - zero-length (or near zero-length) bond - at atom 1 ignored.
+49: [01:58:31] Warning: ambiguous stereochemistry - zero-length (or near zero-length) bond - at atom 1 ignored.
+49: [01:58:31] Warning: ambiguous stereochemistry - overlapping neighbors  - at atom 2 ignored
 49: ===============================================================================
 49: All tests passed (2267 assertions in 79 test cases)
 49: 
- 45/230 Test  #49: chiralityTestsCatch ....................   Passed    2.21 sec
+ 46/230 Test  #49: chiralityTestsCatch ....................   Passed    0.39 sec
 test 50
         Start  50: canonTestsCatch
 
 50: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/canonTestsCatch
 50: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 50: Test timeout computed to be: 1500
+27: Checking against /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
 27: All 191 tests passed
-27: 
-27: Computing MMFF94 energies for /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_dative.smi...
- 46/230 Test  #41: resMolSupplierTest .....................   Passed   67.92 sec
+27:   done
+27: -------------------------------------
+27: Unit tests for all MMFF constraint terms.
+27: 10.0003
+27:   done
+27: -------------------------------------
+27: Unit test for MMFF TorsionConstraint close to 0 degrees.
+27:   done
+27: -------------------------------------
+27: Unit tests for copying MMFF ForceFields.
+27:   done
+27: -------------------------------------
+27: Unit test for MMFF butane scan.
+27:   done
+ 47/230 Test  #27: testMMFFForceField .....................   Passed   46.80 sec
 test 51
         Start  51: moliteratorTestsCatch
 
 51: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/moliteratorTestsCatch
 51: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 51: Test timeout computed to be: 1500
-51: Randomness seeded to: 2170172730
+51: Randomness seeded to: 3708295048
 51: ===============================================================================
 51: All tests passed (14 assertions in 4 test cases)
 51: 
- 47/230 Test  #51: moliteratorTestsCatch ..................   Passed    0.20 sec
+ 48/230 Test  #51: moliteratorTestsCatch ..................   Passed    0.08 sec
 test 52
         Start  52: queryTestsCatch
 
 52: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/queryTestsCatch
 52: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 52: Test timeout computed to be: 1500
-52: Randomness seeded to: 3732691306
+52: Randomness seeded to: 637255173
 52: ===============================================================================
 52: All tests passed (10 assertions in 1 test case)
 52: 
- 48/230 Test  #52: queryTestsCatch ........................   Passed    0.28 sec
+ 49/230 Test  #52: queryTestsCatch ........................   Passed    0.10 sec
 test 53
         Start  53: molbundleTestsCatch
 
 53: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/molbundleTestsCatch
 53: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 53: Test timeout computed to be: 1500
-53: Randomness seeded to: 1603720639
+53: Randomness seeded to: 306486610
 53: ===============================================================================
 53: All tests passed (6 assertions in 1 test case)
 53: 
- 49/230 Test  #53: molbundleTestsCatch ....................   Passed    0.28 sec
+ 50/230 Test  #53: molbundleTestsCatch ....................   Passed    0.09 sec
 test 54
         Start  54: pickleTestsCatch
 
 54: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/pickleTestsCatch
 54: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 54: Test timeout computed to be: 1500
-54: Randomness seeded to: 466449096
+54: Randomness seeded to: 329985914
 54: ===============================================================================
 54: All tests passed (45 assertions in 4 test cases)
 54: 
- 50/230 Test  #54: pickleTestsCatch .......................   Passed    0.35 sec
+ 51/230 Test  #54: pickleTestsCatch .......................   Passed    0.16 sec
 test 55
         Start  55: tableTestsCatch
 
 55: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/tableTestsCatch
 55: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 55: Test timeout computed to be: 1500
-55: Randomness seeded to: 890461912
+55: Randomness seeded to: 79046114
 55: ===============================================================================
 55: All tests passed (7 assertions in 2 test cases)
 55: 
- 51/230 Test  #55: tableTestsCatch ........................   Passed    0.30 sec
+ 52/230 Test  #55: tableTestsCatch ........................   Passed    0.10 sec
 test 56
         Start  56: molopsTestsCatch
 
 56: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/molopsTestsCatch
 56: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol
 56: Test timeout computed to be: 1500
-56: Randomness seeded to: 681369838
+56: Randomness seeded to: 4009756038
 56: ===============================================================================
 56: All tests passed (72 assertions in 4 test cases)
 56: 
- 52/230 Test  #56: molopsTestsCatch .......................   Passed    0.32 sec
+ 53/230 Test  #56: molopsTestsCatch .......................   Passed    0.07 sec
 test 57
         Start  57: smiTest1
 
 57: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/smiTest1
 57: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse
 57: Test timeout computed to be: 1500
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] WARNING: not removing hydrogen atom without neighbors
-57: [19:05:09] Invalid chiral specification on atom 0
-57: [19:05:09] Invalid chiral specification on atom 0
-57: [19:05:09] Invalid chiral specification on atom 0
-57: [19:05:09] Invalid chiral specification on atom 0
-57: [19:05:09] Invalid chiral specification on atom 0
-57: [19:05:09] SMILES Parse Error: unclosed ring for input: 'C1.C11.C'
-57: [19:05:09] SMILES Parse Error: unclosed ring for input: 'C1C.CC11CCC'
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] WARNING: not removing hydrogen atom without neighbors
+57: [01:58:48] Invalid chiral specification on atom 0
+57: [01:58:48] Invalid chiral specification on atom 0
+57: [01:58:48] Invalid chiral specification on atom 0
+57: [01:58:48] Invalid chiral specification on atom 0
+57: [01:58:48] Invalid chiral specification on atom 0
+57: [01:58:48] SMILES Parse Error: unclosed ring for input: 'C1.C11.C'
+57: [01:58:48] SMILES Parse Error: unclosed ring for input: 'C1C.CC11CCC'
 57: --C1CCC2(CC1)CCCCC2CCC1CCCC1
 57: smi: ClC1CCCCC1
 57: smi: ClC1CCCCC1
@@ -25793,58 +25850,58 @@
 57: CbC(bC)aC
 57: O.C
 57: C=C1CC[C@@H]2O[C@@]2(C)CC[C@@](N)(C(C)C)C=C[C@](C)(O)CC[C@@H]1O C=C1CC[C@@H]2O[C@@]2(C)CC[C@@](N)(C(C)C)C=C[C@](C)(O)CC[C@@H]1O
-57: [19:05:12] SMILES Parse Error: syntax error while parsing: c%()ccccc%()
-57: [19:05:12] SMILES Parse Error: Failed parsing SMILES 'c%()ccccc%()' for input: 'c%()ccccc%()'
-57: [19:05:12] SMILES Parse Error: syntax error while parsing: c%(100000)ccccc%(100000)
-57: [19:05:12] SMILES Parse Error: Failed parsing SMILES 'c%(100000)ccccc%(100000)' for input: 'c%(100000)ccccc%(100000)'
-57: [19:05:12] SMILES Parse Error: duplicated ring closure 1 bonds atom 2 to itself for input: 'C1CC111'
-57: [19:05:12] SMILES Parse Error: ring closure 1 duplicates bond between atom 0 and atom 1 for input: 'C1C1'
-57: [19:05:12] SMILES Parse Error: syntax error while parsing: COc(c1)cccc1C#
-57: [19:05:12] SMILES Parse Error: Failed parsing SMILES 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
-57: [19:05:12] SMARTS Parse Error: syntax error while parsing: COc(c1)cccc1C#
-57: [19:05:12] SMARTS Parse Error: Failed parsing SMARTS 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
-57: [19:05:12] SMILES Parse Error: syntax error while parsing: COc(c1)cccc1C#
-57: [19:05:12] SMILES Parse Error: Failed parsing SMILES 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
-57: [19:05:12] SMARTS Parse Error: syntax error while parsing: COc(c1)cccc1C#
-57: [19:05:12] SMARTS Parse Error: Failed parsing SMARTS 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
-57: [19:05:12] SMILES Parse Error: syntax error while parsing: COc(c1)cccc1C#
-57: [19:05:12] SMILES Parse Error: Failed parsing SMILES 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
-57: [19:05:12] SMARTS Parse Error: syntax error while parsing: COc(c1)cccc1C#
-57: [19:05:12] SMARTS Parse Error: Failed parsing SMARTS 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
+57: [01:58:49] SMILES Parse Error: syntax error while parsing: c%()ccccc%()
+57: [01:58:49] SMILES Parse Error: Failed parsing SMILES 'c%()ccccc%()' for input: 'c%()ccccc%()'
+57: [01:58:49] SMILES Parse Error: syntax error while parsing: c%(100000)ccccc%(100000)
+57: [01:58:49] SMILES Parse Error: Failed parsing SMILES 'c%(100000)ccccc%(100000)' for input: 'c%(100000)ccccc%(100000)'
+57: [01:58:49] SMILES Parse Error: duplicated ring closure 1 bonds atom 2 to itself for input: 'C1CC111'
+57: [01:58:49] SMILES Parse Error: ring closure 1 duplicates bond between atom 0 and atom 1 for input: 'C1C1'
+57: [01:58:49] SMILES Parse Error: syntax error while parsing: COc(c1)cccc1C#
+57: [01:58:49] SMILES Parse Error: Failed parsing SMILES 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
+57: [01:58:49] SMARTS Parse Error: syntax error while parsing: COc(c1)cccc1C#
+57: [01:58:49] SMARTS Parse Error: Failed parsing SMARTS 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
+57: [01:58:49] SMILES Parse Error: syntax error while parsing: COc(c1)cccc1C#
+57: [01:58:49] SMILES Parse Error: Failed parsing SMILES 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
+57: [01:58:49] SMARTS Parse Error: syntax error while parsing: COc(c1)cccc1C#
+57: [01:58:49] SMARTS Parse Error: Failed parsing SMARTS 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
+57: [01:58:49] SMILES Parse Error: syntax error while parsing: COc(c1)cccc1C#
+57: [01:58:49] SMILES Parse Error: Failed parsing SMILES 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
+57: [01:58:49] SMARTS Parse Error: syntax error while parsing: COc(c1)cccc1C#
+57: [01:58:49] SMARTS Parse Error: Failed parsing SMARTS 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#'
 57: C=c1s/c2n(c1=O)CCCCCCC\N=2
 57: C1=C\C/C=C2C3=C\C/C=C\C=C/C/3C\2\C=C/1
-57: [19:05:12] SMILES Parse Error: extra close parentheses while parsing: C)
-57: [19:05:12] SMILES Parse Error: Failed parsing SMILES 'C)' for input: 'C)'
- 53/230 Test  #57: smiTest1 ...............................   Passed    3.89 sec
+57: [01:58:49] SMILES Parse Error: extra close parentheses while parsing: C)
+57: [01:58:49] SMILES Parse Error: Failed parsing SMILES 'C)' for input: 'C)'
+ 54/230 Test  #57: smiTest1 ...............................   Passed    0.72 sec
 test 58
         Start  58: smiTest2
 
 58: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/smiTest2
 58: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse
 58: Test timeout computed to be: 1500
-58: [19:05:12] SMILES Parse Error: Failed parsing SMILES 'CO' for input: 'CO'
-58: [19:05:12] SMILES Parse Error: Failed parsing SMILES 'C-O' for input: 'C-O'
-58: [19:05:12] SMILES Parse Error: syntax error while parsing: -
-58: [19:05:12] SMILES Parse Error: Failed parsing SMILES '-' for input: '-'
-58: [19:05:12] SMILES Parse Error: Failed parsing SMILES '[Bg]' for input: '[Bg]'
-58: [19:05:12] SMILES Parse Error: Failed parsing SMILES 'C' for input: 'C'
-58: [19:05:12] SMILES Parse Error: Failed parsing SMILES 'C-O' for input: 'C-O'
-58: [19:05:12] SMILES Parse Error: Failed parsing SMILES '*' for input: '*'
-58: [19:05:12] SMARTS Parse Error: Failed parsing SMARTS 'CO' for input: 'CO'
-58: [19:05:12] SMARTS Parse Error: Failed parsing SMARTS 'C-O' for input: 'C-O'
-58: [19:05:12] SMARTS Parse Error: Failed parsing SMARTS '-' for input: '-'
-58: [19:05:12] SMARTS Parse Error: Failed parsing SMARTS '[Bg]' for input: '[Bg]'
-58: [19:05:12] SMARTS Parse Error: Failed parsing SMARTS 'C' for input: 'C'
-58: [19:05:12] SMARTS Parse Error: Failed parsing SMARTS '-O' for input: '-O'
-58: [19:05:12] SMARTS Parse Error: Failed parsing SMARTS '*' for input: '*'
- 54/230 Test  #58: smiTest2 ...............................   Passed    0.12 sec
+58: [01:58:49] SMILES Parse Error: Failed parsing SMILES 'CO' for input: 'CO'
+58: [01:58:49] SMILES Parse Error: Failed parsing SMILES 'C-O' for input: 'C-O'
+58: [01:58:49] SMILES Parse Error: syntax error while parsing: -
+58: [01:58:49] SMILES Parse Error: Failed parsing SMILES '-' for input: '-'
+58: [01:58:49] SMILES Parse Error: Failed parsing SMILES '[Bg]' for input: '[Bg]'
+58: [01:58:49] SMILES Parse Error: Failed parsing SMILES 'C' for input: 'C'
+58: [01:58:49] SMILES Parse Error: Failed parsing SMILES 'C-O' for input: 'C-O'
+58: [01:58:49] SMILES Parse Error: Failed parsing SMILES '*' for input: '*'
+58: [01:58:49] SMARTS Parse Error: Failed parsing SMARTS 'CO' for input: 'CO'
+58: [01:58:49] SMARTS Parse Error: Failed parsing SMARTS 'C-O' for input: 'C-O'
+58: [01:58:49] SMARTS Parse Error: Failed parsing SMARTS '-' for input: '-'
+58: [01:58:49] SMARTS Parse Error: Failed parsing SMARTS '[Bg]' for input: '[Bg]'
+58: [01:58:49] SMARTS Parse Error: Failed parsing SMARTS 'C' for input: 'C'
+58: [01:58:49] SMARTS Parse Error: Failed parsing SMARTS '-O' for input: '-O'
+58: [01:58:49] SMARTS Parse Error: Failed parsing SMARTS '*' for input: '*'
+ 55/230 Test  #58: smiTest2 ...............................   Passed    0.04 sec
 test 59
         Start  59: cxsmilesTest
 
 59: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/cxsmilesTest
 59: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse
 59: Test timeout computed to be: 1500
-59: Randomness seeded to: 1169432453
+59: Randomness seeded to: 3161592213
 59: Test
 59: 
 59:  ShortAtropisomerNoCoords.cxsmi
@@ -25905,16 +25962,16 @@
 59: 
 59:  BMS-986142_atrop5.cxsmi
 59: 
-59: [19:05:14] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:14] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:14] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:14] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:14] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:14] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:14] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:14] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:15] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:15] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:49] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:49] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:49] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:49] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:49] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:49] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:49] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:49] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:49] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:49] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
 59: Test
 59: 
 59:  BMS-986142_atrop6.cxsmi
@@ -25923,20 +25980,20 @@
 59: 
 59:  BMS-986142_atropBad1.cxsmi
 59: 
-59: [19:05:15] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7
-59: [19:05:15] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7
-59: [19:05:15] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7
-59: [19:05:15] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7
-59: [19:05:15] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7
 59: Test
 59: 
 59:  BMS-986142_atropBad2.cxsmi
 59: 
-59: [19:05:15] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7
-59: [19:05:15] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7
-59: [19:05:15] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7
-59: [19:05:15] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7
-59: [19:05:15] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7
 59: Test
 59: 
 59:  JDQ443_3d.cxsmi
@@ -25961,11 +26018,11 @@
 59: 
 59:  JDQ443_atropBad1.cxsmi
 59: 
-59: [19:05:16] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3
-59: [19:05:16] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3
-59: [19:05:16] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3
-59: [19:05:16] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3
-59: [19:05:16] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3
 59: Test
 59: 
 59:  RP-6306_atrop1.cxsmi
@@ -25986,16 +26043,16 @@
 59: 
 59:  RP-6306_atrop5.cxsmi
 59: 
-59: [19:05:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-59: [19:05:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
 59: Test
 59: 
 59:  RP-6306_atrop6.cxsmi
@@ -26004,20 +26061,20 @@
 59: 
 59:  RP-6306_atropBad1.cxsmi
 59: 
-59: [19:05:16] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5
-59: [19:05:16] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5
-59: [19:05:16] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5
-59: [19:05:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5
-59: [19:05:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5
 59: Test
 59: 
 59:  RP-6306_atropBad2.cxsmi
 59: 
-59: [19:05:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5
-59: [19:05:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5
-59: [19:05:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5
-59: [19:05:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5
-59: [19:05:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5
 59: Test
 59: 
 59:  RP-6306_3d.cxsmi
@@ -26042,34 +26099,34 @@
 59: 
 59:  Sotorasib_atrop5.cxsmi
 59: 
-59: [19:05:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
-59: [19:05:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
-59: [19:05:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
-59: [19:05:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
-59: [19:05:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
-59: [19:05:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
-59: [19:05:18] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
-59: [19:05:18] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
-59: [19:05:18] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
-59: [19:05:18] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
+59: [01:58:50] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored
 59: Test
 59: 
 59:  Sotorasib_atropBad1.cxsmi
 59: 
-59: [19:05:18] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14
-59: [19:05:18] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14
-59: [19:05:18] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14
-59: [19:05:18] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14
-59: [19:05:18] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14
+59: [01:58:50] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14
 59: Test
 59: 
 59:  Sotorasib_atropBad2.cxsmi
 59: 
-59: [19:05:18] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14
-59: [19:05:18] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14
-59: [19:05:18] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14
-59: [19:05:18] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14
-59: [19:05:18] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14
+59: [01:58:50] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14
+59: [01:58:51] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14
+59: [01:58:51] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14
+59: [01:58:51] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14
+59: [01:58:51] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14
 59: Test
 59: 
 59:  Sotorasib_3d.cxsmi
@@ -26094,11 +26151,11 @@
 59: 
 59:  ZM374979_atropBad1.cxsmi
 59: 
-59: [19:05:19] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
-59: [19:05:19] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
-59: [19:05:19] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
-59: [19:05:19] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
-59: [19:05:19] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
+59: [01:58:51] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
+59: [01:58:51] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
+59: [01:58:51] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
+59: [01:58:51] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
+59: [01:58:51] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
 59: Test
 59: 
 59:  Mrtx1719_3d.cxsmi
@@ -26123,11 +26180,11 @@
 59: 
 59:  Mrtx1719_atropBad1.cxsmi
 59: 
-59: [19:05:20] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12
-59: [19:05:20] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12
-59: [19:05:20] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12
-59: [19:05:20] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12
-59: [19:05:20] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12
+59: [01:58:51] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12
+59: [01:58:51] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12
+59: [01:58:51] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12
+59: [01:58:51] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12
+59: [01:58:51] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12
 59: Test
 59: 
 59:  AtropCanon1.cxsmi
@@ -26151,107 +26208,107 @@
 59: ===============================================================================
 59: All tests passed (2445 assertions in 29 test cases)
 59: 
- 55/230 Test  #59: cxsmilesTest ...........................   Passed   20.91 sec
+ 56/230 Test  #59: cxsmilesTest ...........................   Passed    5.61 sec
 test 60
         Start  60: smaTest1
 
 60: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/smaTest1
 60: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse
 60: Test timeout computed to be: 1500
-60: [19:05:35] SMARTS Parse Error: syntax error while parsing: [C:10H3]CC
-60: [19:05:35] SMARTS Parse Error: Failed parsing SMARTS '[C:10H3]CC' for input: '[C:10H3]CC'
-60: [19:05:35] SMARTS Parse Error: syntax error while parsing: [C:10:3]ON
-60: [19:05:35] SMARTS Parse Error: Failed parsing SMARTS '[C:10:3]ON' for input: '[C:10:3]ON'
-60: [19:05:35] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
-60: [19:05:35] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
- 56/230 Test  #60: smaTest1 ...............................   Passed    1.78 sec
+60: [01:58:55] SMARTS Parse Error: syntax error while parsing: [C:10H3]CC
+60: [01:58:55] SMARTS Parse Error: Failed parsing SMARTS '[C:10H3]CC' for input: '[C:10H3]CC'
+60: [01:58:55] SMARTS Parse Error: syntax error while parsing: [C:10:3]ON
+60: [01:58:55] SMARTS Parse Error: Failed parsing SMARTS '[C:10:3]ON' for input: '[C:10:3]ON'
+60: [01:58:55] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
+60: [01:58:55] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
+ 57/230 Test  #60: smaTest1 ...............................   Passed    0.84 sec
 test 61
         Start  61: smiTestCatch
 
 61: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/smiTestCatch
 61: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse
 61: Test timeout computed to be: 1500
-61: Randomness seeded to: 1058431738
-61: [19:05:36] SMILES Parse Error: unclosed ring for input: 'c1ccccc'
-61: [19:05:36] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-61: [19:05:36] SMARTS Parse Error: unclosed ring for input: 'c1ccccc'
-61: [19:05:36] SMARTS Parse Error: unclosed ring for input: 'C1C'
-61: [19:05:36] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-61: [19:05:36] SMARTS Parse Error: syntax error while parsing: C)foo
-61: [19:05:36] SMARTS Parse Error: Failed parsing SMARTS 'C)foo' for input: 'C)foo'
-61: [19:05:36] SMARTS Parse Error: syntax error while parsing: CCC |$foo;;bar$|
-61: [19:05:36] SMARTS Parse Error: Failed parsing SMARTS 'CCC |$foo;;bar$|' for input: 'CCC |$foo;;bar$|'
-61: [19:05:36] unrecognized CXSMILES CONNECT value: 'EU'. Assuming 'eu'
-61: [19:05:37] w block attempts to set wedging on bond 0 more than once.
-61: [19:05:37] improperly formatted w block
-61: [19:05:37] atom 3 is not associated with bond 1(1-2) in w block
-61: [19:05:37] SMARTS Parse Error: unclosed ring for input: 'C1.C2.C3.C4.C5'
-61: [19:05:37] SMILES Parse Error: unclosed ring for input: 'C1.C2.C3.C4.C5'
-61: [19:05:37] SMARTS Parse Error: syntax error while parsing: C1C)foo
-61: [19:05:37] SMARTS Parse Error: Failed parsing SMARTS 'C1C)foo' for input: 'C1C)foo'
-61: [19:05:37] SMILES Parse Error: extra close parentheses while parsing: C1C)foo
-61: [19:05:37] SMILES Parse Error: Failed parsing SMILES 'C1C)foo' for input: 'C1C)foo'
+61: Randomness seeded to: 3576898549
+61: [01:58:56] SMILES Parse Error: unclosed ring for input: 'c1ccccc'
+61: [01:58:56] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+61: [01:58:56] SMARTS Parse Error: unclosed ring for input: 'c1ccccc'
+61: [01:58:56] SMARTS Parse Error: unclosed ring for input: 'C1C'
+61: [01:58:56] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+61: [01:58:56] SMARTS Parse Error: syntax error while parsing: C)foo
+61: [01:58:56] SMARTS Parse Error: Failed parsing SMARTS 'C)foo' for input: 'C)foo'
+61: [01:58:56] SMARTS Parse Error: syntax error while parsing: CCC |$foo;;bar$|
+61: [01:58:56] SMARTS Parse Error: Failed parsing SMARTS 'CCC |$foo;;bar$|' for input: 'CCC |$foo;;bar$|'
+61: [01:58:56] unrecognized CXSMILES CONNECT value: 'EU'. Assuming 'eu'
+61: [01:58:56] w block attempts to set wedging on bond 0 more than once.
+61: [01:58:56] improperly formatted w block
+61: [01:58:56] atom 3 is not associated with bond 1(1-2) in w block
+61: [01:58:56] SMARTS Parse Error: unclosed ring for input: 'C1.C2.C3.C4.C5'
+61: [01:58:56] SMILES Parse Error: unclosed ring for input: 'C1.C2.C3.C4.C5'
+61: [01:58:56] SMARTS Parse Error: syntax error while parsing: C1C)foo
+61: [01:58:56] SMARTS Parse Error: Failed parsing SMARTS 'C1C)foo' for input: 'C1C)foo'
+61: [01:58:56] SMILES Parse Error: extra close parentheses while parsing: C1C)foo
+61: [01:58:56] SMILES Parse Error: Failed parsing SMILES 'C1C)foo' for input: 'C1C)foo'
 61: ===============================================================================
 61: All tests passed (1570 assertions in 66 test cases)
 61: 
- 57/230 Test  #61: smiTestCatch ...........................   Passed    2.19 sec
+ 58/230 Test  #61: smiTestCatch ...........................   Passed    0.98 sec
 test 62
         Start  62: nontetrahedralCatch
 
 62: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/nontetrahedralCatch
 62: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse
 62: Test timeout computed to be: 1500
-62: Randomness seeded to: 1984324102
-62: [19:05:38] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
-62: [19:05:38] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
-62: [19:05:38] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
-62: [19:05:38] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
-62: [19:05:38] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
-62: [19:05:38] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
-62: [19:05:38] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
-62: [19:05:38] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
-62: [19:05:38] ignoring non-tetrahedral stereo specification since setAllowNontetrahedralChirality() is false.
+62: Randomness seeded to: 4189823208
+62: [01:58:56] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
+62: [01:58:57] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
+62: [01:58:57] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
+62: [01:58:57] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
+62: [01:58:57] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
+62: [01:58:57] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
+62: [01:58:57] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
+62: [01:58:57] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry
+62: [01:58:57] ignoring non-tetrahedral stereo specification since setAllowNontetrahedralChirality() is false.
 62: ===============================================================================
 62: All tests passed (308 assertions in 9 test cases)
 62: 
- 58/230 Test  #62: nontetrahedralCatch ....................   Passed    1.17 sec
+ 59/230 Test  #62: nontetrahedralCatch ....................   Passed    0.34 sec
 test 63
         Start  63: v2smiTestCatch
 
 63: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/v2smiTestCatch
 63: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse
 63: Test timeout computed to be: 1500
-63: Randomness seeded to: 2426312838
+63: Randomness seeded to: 3267572048
 63: ===============================================================================
 63: All tests passed (14 assertions in 2 test cases)
 63: 
- 59/230 Test  #63: v2smiTestCatch .........................   Passed    0.26 sec
+ 60/230 Test  #63: v2smiTestCatch .........................   Passed    0.12 sec
 test 64
         Start  64: testDepictor
 
 64: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/testDepictor
 64: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor
 64: Test timeout computed to be: 1500
-64: [19:05:44] Warning: stereochemistry around double bond may be incorrect in depiction.
- 60/230 Test  #64: testDepictor ...........................   Passed    6.31 sec
+64: [01:58:58] Warning: stereochemistry around double bond may be incorrect in depiction.
+ 61/230 Test  #64: testDepictor ...........................   Passed    2.10 sec
 test 65
         Start  65: depictorCatch
 
 65: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/depictorCatch
 65: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor
 65: Test timeout computed to be: 1500
-65: Randomness seeded to: 3796732016
+65: Randomness seeded to: 3618771620
 65: ===============================================================================
 65: All tests passed (577 assertions in 17 test cases)
 65: 
- 61/230 Test  #65: depictorCatch ..........................   Passed    2.32 sec
+ 62/230 Test  #65: depictorCatch ..........................   Passed    0.60 sec
 test 66
         Start  66: pyDepictor
 
 66: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Depictor/Wrap/testDepictor.py"
 66: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/Wrap
 66: Test timeout computed to be: 1500
- 62/230 Test  #66: pyDepictor .............................***Exception: SegFault  3.56 sec
+ 63/230 Test  #66: pyDepictor .............................***Exception: SegFault  0.87 sec
 
 test 67
         Start  67: testMrvToMol
@@ -26296,7 +26353,7 @@
 67: 
 67:  ProblemShort.mol
 67: 
-67: [19:05:53] For a MultipleSgroup expansion, the matching orphaned bond was not found
+67: [01:59:01] For a MultipleSgroup expansion, the matching orphaned bond was not found
 67: The multiple sgroup will be ignored
 67: Test
 67: 
@@ -26610,8 +26667,8 @@
 67: 
 67:  MulticenterSgroup.mrv
 67: 
-67: [19:06:00] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
-67: [19:06:00] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
+67: [01:59:02] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
+67: [01:59:02] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
 67: Test
 67: 
 67:  GenericSgroup.mrv
@@ -26644,7 +26701,7 @@
 67: 
 67:  MarvinBadMissingMolID.mrv
 67: 
-67: [19:06:00] 
+67: [01:59:02] 
 67: 
 67: ****
 67: Test Assert
@@ -26655,10 +26712,10 @@
 67: Stacktrace:
 67:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 67:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-67:  2# 0x0073747A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse/testMrvToMol
-67:  3# 0x007408C6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse/testMrvToMol
-67:  4# 0x007332AA in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse/testMrvToMol
-67:  5# 0xF73A34FA in /lib/arm-linux-gnueabihf/libc.so.6
+67:  2# 0x0042E47A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse/testMrvToMol
+67:  3# 0x004378C6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse/testMrvToMol
+67:  4# 0x0042A2AA in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MarvinParse/testMrvToMol
+67:  5# 0xB68554FA in /lib/arm-linux-gnueabihf/libc.so.6
 67:  6# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 67: ----------
 67: ****
@@ -26853,8 +26910,8 @@
 67: 
 67:  BMS-986142_atrop5.mrv
 67: 
-67: [19:06:01] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-67: [19:06:01] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
 67: Test
 67: 
 67:  BMS-986142_atrop6.mrv
@@ -26867,13 +26924,13 @@
 67: 
 67:  BMS-986142_atrop8.mrv
 67: 
-67: [19:06:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-67: [19:06:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
 67: Test
 67: 
 67:  BMS-986142_atropBad2.mrv
 67: 
-67: [19:06:02] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29
+67: [01:59:02] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29
 67: Test
 67: 
 67:  JDQ443_3d.mrv
@@ -26894,7 +26951,7 @@
 67: 
 67:  JDQ443_atropBad1.mrv
 67: 
-67: [19:06:02] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21
+67: [01:59:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21
 67: Test
 67: 
 67:  RP-6306_atrop1.mrv
@@ -26915,21 +26972,20 @@
 67: 
 67:  RP-6306_atrop5.mrv
 67: 
-67: [19:06:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-67: [19:06:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
 67: Test
 67: 
 67:  RP-6306_atropBad1.mrv
 67: 
-67: [19:06:03] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8
+67: [01:59:03] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8
 67: Test
 67: 
 67:  RP-6306_atropBad2.mrv
 67: 
-67: [19:06:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-67: [19:06:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-67: [19:06:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8
-27: Checking against /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+67: [01:59:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8
 67: Test
 67: 
 67:  RP-6306_3d.mrv
@@ -26954,18 +27010,18 @@
 67: 
 67:  Sotorasib_atrop5.mrv
 67: 
-67: [19:06:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-67: [19:06:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
 67: Test
 67: 
 67:  Sotorasib_atropBad1.mrv
 67: 
-67: [19:06:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20
+67: [01:59:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20
 67: Test
 67: 
 67:  Sotorasib_atropBad2.mrv
 67: 
-67: [19:06:03] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20
+67: [01:59:03] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20
 67: Test
 67: 
 67:  Sotorasib_3d.mrv
@@ -26986,7 +27042,7 @@
 67: 
 67:  ZM374979_atropBad1.mrv
 67: 
-67: [19:06:04] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
+67: [01:59:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
 67: Test
 67: 
 67:  mrtx1719_3d.mrv
@@ -27007,8 +27063,7 @@
 67: 
 67:  mrtx1719_atropBad1.mrv
 67: 
-67: [19:06:05] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16
-27: All 191 tests passed
+67: [01:59:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16
 67: Test
 67: 
 67:  FalseAtropisomer.mrv
@@ -27065,8 +27120,8 @@
 67: 
 67:  BMS-986142_atrop5.mrv
 67: 
-67: [19:06:06] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-67: [19:06:06] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
 67: Test
 67: 
 67:  BMS-986142_atrop6.mrv
@@ -27079,13 +27134,13 @@
 67: 
 67:  BMS-986142_atrop8.mrv
 67: 
-67: [19:06:06] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-67: [19:06:06] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
 67: Test
 67: 
 67:  BMS-986142_atropBad2.mrv
 67: 
-67: [19:06:06] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29
+67: [01:59:03] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29
 67: Test
 67: 
 67:  JDQ443_3d.mrv
@@ -27106,7 +27161,7 @@
 67: 
 67:  JDQ443_atropBad1.mrv
 67: 
-67: [19:06:07] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21
+67: [01:59:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21
 67: Test
 67: 
 67:  RP-6306_atrop1.mrv
@@ -27127,22 +27182,20 @@
 67: 
 67:  RP-6306_atrop5.mrv
 67: 
-67: [19:06:07] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-67: [19:06:07] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
 67: Test
 67: 
 67:  RP-6306_atropBad1.mrv
 67: 
-67: [19:06:07] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8
+67: [01:59:03] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8
 67: Test
 67: 
 67:  RP-6306_atropBad2.mrv
 67: 
-67: [19:06:07] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-67: [19:06:07] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-67: [19:06:07] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8
-27: 
-27: Computing MMFF94 energies for /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.smi...
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+67: [01:59:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+67: [01:59:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8
 67: Test
 67: 
 67:  RP-6306_3d.mrv
@@ -27167,18 +27220,18 @@
 67: 
 67:  Sotorasib_atrop5.mrv
 67: 
-67: [19:06:07] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-67: [19:06:07] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:04] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+67: [01:59:04] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
 67: Test
 67: 
 67:  Sotorasib_atropBad1.mrv
 67: 
-67: [19:06:08] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20
+67: [01:59:04] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20
 67: Test
 67: 
 67:  Sotorasib_atropBad2.mrv
 67: 
-67: [19:06:08] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20
+67: [01:59:04] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20
 67: Test
 67: 
 67:  Sotorasib_3d.mrv
@@ -27199,7 +27252,7 @@
 67: 
 67:  ZM374979_atropBad1.mrv
 67: 
-67: [19:06:08] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
+67: [01:59:04] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
 67: Test
 67: 
 67:  mrtx1719_3d.mrv
@@ -27220,7 +27273,7 @@
 67: 
 67:  mrtx1719_atropBad1.mrv
 67: 
-67: [19:06:09] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16
+67: [01:59:04] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16
 67: Test
 67: 
 67:  AlexRxn.mrv
@@ -27261,7 +27314,7 @@
 67: 
 67:  EmptyRxn.mrv
 67: 
-67: [19:06:10] initialization failed
+67: [01:59:04] initialization failed
 67: Test
 67: 
 67:  RxnNoCoords.mrv
@@ -27350,7 +27403,7 @@
 67: 
 67:  Smiles1
 67: 
- 63/230 Test  #67: testMrvToMol ...........................   Passed   19.71 sec
+ 64/230 Test  #67: testMrvToMol ...........................   Passed    4.09 sec
 test 68
         Start  68: fileParsersTest1
 
@@ -27359,23 +27412,23 @@
 68: Test timeout computed to be: 1500
 68: ***************************************
 68: ***************************************
-68: [19:06:12] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-68: [19:06:12] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-68: [19:06:12] bond with order 0 found on line 7. This is not part of the MDL specification.
-68: [19:06:13] Skipping unrecognized collection type at line 26: MDLV30/HILITE BONDS=(1 7)
-68: [19:06:13] Skipping unrecognized collection type at line 27: MDLV30/HILITE ATOMS=(1 7)
-68: [19:06:13] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
+68: [01:59:05] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+68: [01:59:05] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+68: [01:59:05] bond with order 0 found on line 7. This is not part of the MDL specification.
+68: [01:59:05] Skipping unrecognized collection type at line 26: MDLV30/HILITE BONDS=(1 7)
+68: [01:59:05] Skipping unrecognized collection type at line 27: MDLV30/HILITE ATOMS=(1 7)
+68: [01:59:05] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
 68: generating smiles
 68: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2
 68: converting back
 68: check isomorphism
-68: [19:06:28] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
-68: [19:06:28] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
-68: [19:06:28] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
-68: [19:06:28] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
-68: [19:06:28]  deprecated group abbreviation ignored on line 24
+68: [01:59:09] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
+68: [01:59:09] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
+68: [01:59:09] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
+68: [01:59:09] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
+68: [01:59:09]  deprecated group abbreviation ignored on line 24
 68: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*]
-68: [19:06:28] 
+68: [01:59:09] 
 68: 
 68: ****
 68: Post-condition Violation
@@ -27387,24 +27440,24 @@
 68:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 68:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 68:  2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-68:  3# 0xF77A5EAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-68:  4# 0xF77AF2B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+68:  3# 0xB6E7EEAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+68:  4# 0xB6E882B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 68:  5# RDKit::FileParserUtils::ParseV2000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 68:  6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 68:  7# RDKit::v2::FileParsers::MolFromMolFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-68:  8# 0x00525F12 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68:  9# 0x0058331A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68: 10# 0x0051236C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68: 11# 0xF72084FA in /lib/arm-linux-gnueabihf/libc.so.6
+68:  8# 0x00440F12 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68:  9# 0x0049E31A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68: 10# 0x0042D36C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68: 11# 0xB68E14FA in /lib/arm-linux-gnueabihf/libc.so.6
 68: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 68: ----------
 68: ****
 68: 
-68: [19:06:32] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
-68: [19:06:32] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
+68: [01:59:10] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
+68: [01:59:10] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
 68: ----------------------------------
 68: ----------------------------------
-68: [19:06:33] 
+68: [01:59:11] 
 68: 
 68: ****
 68: Pre-condition Violation
@@ -27416,42 +27469,42 @@
 68:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 68:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 68:  2# RDKit::setAtomRLabel(RDKit::Atom*, int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-68:  3# 0x00532664 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68:  4# 0x0058337A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68:  5# 0x0051236C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68:  6# 0xF72084FA in /lib/arm-linux-gnueabihf/libc.so.6
+68:  3# 0x0044D664 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68:  4# 0x0049E37A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68:  5# 0x0042D36C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68:  6# 0xB68E14FA in /lib/arm-linux-gnueabihf/libc.so.6
 68:  7# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 68: ----------
 68: ****
 68: 
-68: [19:06:33] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-68: [19:06:36] SMARTS Parse Error: syntax error while parsing: MyDogHasFleas
-68: [19:06:36] SMARTS Parse Error: Failed parsing SMARTS 'MyDogHasFleas' for input: 'MyDogHasFleas'
-68: [19:06:37] Empty atom list: 'M  ALS   1  0 F' on line 8.
+68: [01:59:11] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+68: [01:59:12] SMARTS Parse Error: syntax error while parsing: MyDogHasFleas
+68: [01:59:12] SMARTS Parse Error: Failed parsing SMARTS 'MyDogHasFleas' for input: 'MyDogHasFleas'
+68: [01:59:12] Empty atom list: 'M  ALS   1  0 F' on line 8.
 68: de_DE.UTF-8
-68: [19:06:37] -------------------------------------
-68: [19:06:37]     Test multithreading Locale Switching
-68: [19:06:37]     Test multithreading (Done)
-68: [19:06:37] -------------------------------------
+68: [01:59:12] -------------------------------------
+68: [01:59:12]     Test multithreading Locale Switching
+68: [01:59:13]     Test multithreading (Done)
+68: [01:59:13] -------------------------------------
 68: ***************************************
 68: ***************************************
-68: [19:06:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-68: [19:06:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-68: [19:06:38] bond with order 0 found on line 7. This is not part of the MDL specification.
-68: [19:06:38] Skipping unrecognized collection type at line 26: MDLV30/HILITE BONDS=(1 7)
-68: [19:06:38] Skipping unrecognized collection type at line 27: MDLV30/HILITE ATOMS=(1 7)
-68: [19:06:38] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
+68: [01:59:13] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+68: [01:59:13] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+68: [01:59:13] bond with order 0 found on line 7. This is not part of the MDL specification.
+68: [01:59:13] Skipping unrecognized collection type at line 26: MDLV30/HILITE BONDS=(1 7)
+68: [01:59:13] Skipping unrecognized collection type at line 27: MDLV30/HILITE ATOMS=(1 7)
+68: [01:59:13] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
 68: generating smiles
 68: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2
 68: converting back
 68: check isomorphism
-68: [19:06:51] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
-68: [19:06:51] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
-68: [19:06:51] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
-68: [19:06:51] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
-68: [19:06:51]  deprecated group abbreviation ignored on line 24
+68: [01:59:15] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
+68: [01:59:15] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
+68: [01:59:15] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
+68: [01:59:15] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored
+68: [01:59:15]  deprecated group abbreviation ignored on line 24
 68: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*]
-68: [19:06:51] 
+68: [01:59:15] 
 68: 
 68: ****
 68: Post-condition Violation
@@ -27463,24 +27516,24 @@
 68:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 68:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 68:  2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-68:  3# 0xF77A5EAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-68:  4# 0xF77AF2B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+68:  3# 0xB6E7EEAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+68:  4# 0xB6E882B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 68:  5# RDKit::FileParserUtils::ParseV2000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 68:  6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 68:  7# RDKit::v2::FileParsers::MolFromMolFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-68:  8# 0x00525F12 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68:  9# 0x0058331A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68: 10# 0x005123C0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68: 11# 0xF72084FA in /lib/arm-linux-gnueabihf/libc.so.6
+68:  8# 0x00440F12 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68:  9# 0x0049E31A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68: 10# 0x0042D3C0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68: 11# 0xB68E14FA in /lib/arm-linux-gnueabihf/libc.so.6
 68: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 68: ----------
 68: ****
 68: 
-68: [19:06:54] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
-68: [19:06:54] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
+68: [01:59:16] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
+68: [01:59:16] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
 68: ----------------------------------
 68: ----------------------------------
-68: [19:06:55] 
+68: [01:59:16] 
 68: 
 68: ****
 68: Pre-condition Violation
@@ -27492,122 +27545,122 @@
 68:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 68:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 68:  2# RDKit::setAtomRLabel(RDKit::Atom*, int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
-68:  3# 0x00532664 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68:  4# 0x0058337A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68:  5# 0x005123C0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
-68:  6# 0xF72084FA in /lib/arm-linux-gnueabihf/libc.so.6
+68:  3# 0x0044D664 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68:  4# 0x0049E37A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68:  5# 0x0042D3C0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersTest1
+68:  6# 0xB68E14FA in /lib/arm-linux-gnueabihf/libc.so.6
 68:  7# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 68: ----------
 68: ****
 68: 
-68: [19:06:55] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
-68: [19:07:00] SMARTS Parse Error: syntax error while parsing: MyDogHasFleas
-68: [19:07:00] SMARTS Parse Error: Failed parsing SMARTS 'MyDogHasFleas' for input: 'MyDogHasFleas'
-68: [19:07:00] Empty atom list: 'M  ALS   1  0 F' on line 8.
- 64/230 Test  #68: fileParsersTest1 .......................   Passed   49.88 sec
+68: [01:59:16] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm.
+68: [01:59:17] SMARTS Parse Error: syntax error while parsing: MyDogHasFleas
+68: [01:59:17] SMARTS Parse Error: Failed parsing SMARTS 'MyDogHasFleas' for input: 'MyDogHasFleas'
+68: [01:59:17] Empty atom list: 'M  ALS   1  0 F' on line 8.
+ 65/230 Test  #68: fileParsersTest1 .......................   Passed   12.27 sec
 test 69
         Start  69: testAtropisomers
 
 69: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testAtropisomers
 69: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 69: Test timeout computed to be: 1500
-69: [19:07:01]  ---- Running with POSIX locale ----- 
-69: [19:07:01] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:01] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:01] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:01] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:01] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:01] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:02] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29
-69: [19:07:02] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29
-69: [19:07:02] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29
-69: [19:07:02] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:02] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:02] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:02] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21
-69: [19:07:02] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21
-69: [19:07:02] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8
-69: [19:07:02] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8
-69: [19:07:02] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
-69: [19:07:02] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8
-69: [19:07:02] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:02] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:03] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-69: [19:07:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20
-69: [19:07:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20
-69: [19:07:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20
-69: [19:07:03] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20
-69: [19:07:03] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20
-69: [19:07:03] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20
-69: [19:07:03] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:03] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:03] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
-69: [19:07:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
-69: [19:07:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
-69: [19:07:03] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:03] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:03] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-69: [19:07:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16
-69: [19:07:03] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16
-69: [19:07:04] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16
+69: [01:59:17]  ---- Running with POSIX locale ----- 
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29
+69: [01:59:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29
+69: [01:59:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8
+69: [01:59:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8
+69: [01:59:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20
+69: [01:59:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20
+69: [01:59:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20
+69: [01:59:17] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
+69: [01:59:17] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:17] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+69: [01:59:18] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16
+69: [01:59:18] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16
+69: [01:59:18] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16
 69: Atropisomers- 1 hits   3 misses
 69: Final results:
 69: Found atropisomers in TestMultInSDF.sdf - 1 hits   4 misses
- 65/230 Test  #69: testAtropisomers .......................   Passed    4.49 sec
+ 66/230 Test  #69: testAtropisomers .......................   Passed    1.12 sec
 test 70
         Start  70: testSquiggleDoubleBonds
 
 70: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testSquiggleDoubleBonds
 70: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 70: Test timeout computed to be: 1500
-70: Randomness seeded to: 906229180
+70: Randomness seeded to: 2274752562
 70: ===============================================================================
 70: All tests passed (15 assertions in 3 test cases)
 70: 
- 66/230 Test  #70: testSquiggleDoubleBonds ................   Passed    0.44 sec
+ 67/230 Test  #70: testSquiggleDoubleBonds ................   Passed    0.09 sec
 test 71
         Start  71: testMolSupplier
 
 71: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
 71: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 71: Test timeout computed to be: 1500
-71: [19:07:06] 
+71: [01:59:18] 
 71: -----------------------------------------
-71: [19:07:06] 
+71: [01:59:18] 
 71: 
 71: ****
 71: Invariant Violation
@@ -27618,231 +27671,231 @@
 71: Stacktrace:
 71:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 71:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-71:  2# 0xF7B0F8C4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+71:  2# 0xB6EC58C4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 71:  3# RDKit::v2::FileParsers::MaeMolSupplier::next() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-71:  4# 0x00AEAD98 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
-71:  5# 0x00AE34DE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
-71:  6# 0x00ABBA88 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
-71:  7# 0xF74E04FA in /lib/arm-linux-gnueabihf/libc.so.6
+71:  4# 0x00533D98 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
+71:  5# 0x0052C4DE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
+71:  6# 0x00504A88 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
+71:  7# 0xB68964FA in /lib/arm-linux-gnueabihf/libc.so.6
 71:  8# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 71: ----------
 71: ****
 71: 
-71: [19:07:08] Finished: testMolSup()
-71: [19:07:08] -----------------------------------------
+71: [01:59:18] Finished: testMolSup()
+71: [01:59:18] -----------------------------------------
 71: 
-71: [19:07:08] -----------------------------------------
-71: [19:07:08] Finished: testRandMolSup()
-71: [19:07:08] -----------------------------------------
+71: [01:59:18] -----------------------------------------
+71: [01:59:18] Finished: testRandMolSup()
+71: [01:59:18] -----------------------------------------
 71: 
-71: [19:07:08] -----------------------------------------
-71: [19:07:09] Finished: testSmilesSup()
-71: [19:07:09] -----------------------------------------
+71: [01:59:18] -----------------------------------------
+71: [01:59:18] Finished: testSmilesSup()
+71: [01:59:18] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] ------------------------------------------------------
-71: [19:07:09] SMILES Parse Error: syntax error while parsing: fail
-71: [19:07:09] SMILES Parse Error: Failed parsing SMILES 'fail' for input: 'fail'
-71: [19:07:09] ERROR: Smiles parse error on line 3
-71: [19:07:09] ERROR: Cannot create molecule from : 'fail'
-71: [19:07:09] ------------------------------------------------------
-71: [19:07:09] ------------------------------------------------------
-71: [19:07:09] >>> This may result in an infinite loop.  It should finish almost immediately:
-71: [19:07:09] <<< done.
-71: [19:07:09] Finished: testSmilesSupFromText()
-71: [19:07:09] -----------------------------------------
+71: [01:59:18] -----------------------------------------
+71: [01:59:18] ------------------------------------------------------
+71: [01:59:18] SMILES Parse Error: syntax error while parsing: fail
+71: [01:59:18] SMILES Parse Error: Failed parsing SMILES 'fail' for input: 'fail'
+71: [01:59:18] ERROR: Smiles parse error on line 3
+71: [01:59:18] ERROR: Cannot create molecule from : 'fail'
+71: [01:59:18] ------------------------------------------------------
+71: [01:59:18] ------------------------------------------------------
+71: [01:59:18] >>> This may result in an infinite loop.  It should finish almost immediately:
+71: [01:59:18] <<< done.
+71: [01:59:18] Finished: testSmilesSupFromText()
+71: [01:59:18] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testSmilesWriter()
-71: [19:07:09] -----------------------------------------
+71: [01:59:18] -----------------------------------------
+71: [01:59:18] Finished: testSmilesWriter()
+71: [01:59:18] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testSDWriter()
-71: [19:07:09] -----------------------------------------
+71: [01:59:18] -----------------------------------------
+71: [01:59:18] Finished: testSDWriter()
+71: [01:59:18] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testSDSupplierEnding()
-71: [19:07:09] -----------------------------------------
+71: [01:59:18] -----------------------------------------
+71: [01:59:18] Finished: testSDSupplierEnding()
+71: [01:59:18] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testSuppliersEmptyFile()
-71: [19:07:09] -----------------------------------------
+71: [01:59:18] -----------------------------------------
+71: [01:59:18] Finished: testSuppliersEmptyFile()
+71: [01:59:18] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testCisTrans()
-71: [19:07:09] -----------------------------------------
+71: [01:59:18] -----------------------------------------
+71: [01:59:18] Finished: testCisTrans()
+71: [01:59:18] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testStereoRound()
-71: [19:07:09] -----------------------------------------
+71: [01:59:18] -----------------------------------------
+71: [01:59:18] Finished: testStereoRound()
+71: [01:59:18] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-71: [19:07:09] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-71: [19:07:09] Finished: testIssue226()
-71: [19:07:09] -----------------------------------------
+71: [01:59:18] -----------------------------------------
+71: [01:59:18] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+71: [01:59:19] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+71: [01:59:19] Finished: testIssue226()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testTDTSupplier1()
-71: [19:07:09] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testTDTSupplier1()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testTDTSupplier2()
-71: [19:07:09] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testTDTSupplier2()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testTDTSupplier3()
-71: [19:07:09] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testTDTSupplier3()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testSDSupplierFromText()
-71: [19:07:09] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testSDSupplierFromText()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] ERROR: Problems encountered parsing data fields
-71: [19:07:09] ERROR: moving to the beginning of the next molecule
-71: [19:07:09] ERROR: Problems encountered parsing data fields
-71: [19:07:09] ERROR: moving to the beginning of the next molecule
-71: [19:07:09] Spurious data before the first property will be ignored
-71: [19:07:09] Property <ID> will be truncated after the first blank line
-71: [19:07:09] Property <ID> will be truncated after the first blank line
-71: [19:07:09] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
-71: [19:07:09] Finished: testSDSupplierStrLax1()
-71: [19:07:09] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] ERROR: Problems encountered parsing data fields
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] ERROR: Problems encountered parsing data fields
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] Spurious data before the first property will be ignored
+71: [01:59:19] Property <ID> will be truncated after the first blank line
+71: [01:59:19] Property <ID> will be truncated after the first blank line
+71: [01:59:19] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
+71: [01:59:19] Finished: testSDSupplierStrLax1()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] ERROR: Problems encountered parsing data fields
-71: [19:07:09] ERROR: moving to the beginning of the next molecule
-71: [19:07:09] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
-71: [19:07:09] Finished: testSDSupplierStrLax2()
-71: [19:07:09] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] ERROR: Problems encountered parsing data fields
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
+71: [01:59:19] Finished: testSDSupplierStrLax2()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] ERROR: Problems encountered parsing data fields
-71: [19:07:09] ERROR: moving to the beginning of the next molecule
-71: [19:07:09] ERROR: Problems encountered parsing data fields
-71: [19:07:09] ERROR: moving to the beginning of the next molecule
-71: [19:07:09] Spurious data before the first property will be ignored
-71: [19:07:09] Property <ID> will be truncated after the first blank line
-71: [19:07:09] Property <ID> will be truncated after the first blank line
-71: [19:07:09] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
-71: [19:07:09] Finished: testSDSupplierFromTextStrLax1()
-71: [19:07:09] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] ERROR: Problems encountered parsing data fields
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] ERROR: Problems encountered parsing data fields
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] Spurious data before the first property will be ignored
+71: [01:59:19] Property <ID> will be truncated after the first blank line
+71: [01:59:19] Property <ID> will be truncated after the first blank line
+71: [01:59:19] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
+71: [01:59:19] Finished: testSDSupplierFromTextStrLax1()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] ERROR: Problems encountered parsing data fields
-71: [19:07:09] ERROR: moving to the beginning of the next molecule
-71: [19:07:09] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
-71: [19:07:09] Finished: testSDSupplierFromTextStrLax2()
-71: [19:07:09] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] ERROR: Problems encountered parsing data fields
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
+71: [01:59:19] Finished: testSDSupplierFromTextStrLax2()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] Finished: testIssue265()
-71: [19:07:09] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testIssue265()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:09] ERROR: End of data field name not found
-71: [19:07:09] ERROR: moving to the beginning of the next molecule
-71: [19:07:09] Explicit valence for atom # 0 F, 2, is greater than permitted
-71: [19:07:09] ERROR: Could not sanitize molecule ending on line 16
-71: [19:07:09] ERROR: Explicit valence for atom # 0 F, 2, is greater than permitted
-71: [19:07:09] ERROR: Atom line too short: '  1  2  1  0  0  0  0' on line 12
-71: [19:07:09] ERROR: moving to the beginning of the next molecule
-71: [19:07:09] ERROR: Bond line too short: 'M  END' on line 18
-71: [19:07:09] ERROR: moving to the beginning of the next molecule
-71: [19:07:09] Finished: testSDErrorHandling()
-71: [19:07:09] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] ERROR: End of data field name not found
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] Explicit valence for atom # 0 F, 2, is greater than permitted
+71: [01:59:19] ERROR: Could not sanitize molecule ending on line 16
+71: [01:59:19] ERROR: Explicit valence for atom # 0 F, 2, is greater than permitted
+71: [01:59:19] ERROR: Atom line too short: '  1  2  1  0  0  0  0' on line 12
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] ERROR: Bond line too short: 'M  END' on line 18
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] Finished: testSDErrorHandling()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:09] -----------------------------------------
-71: [19:07:10] Finished: testIssue381()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testIssue381()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] Finished: testSetStreamIndices()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testSetStreamIndices()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] Finished: testMixIterAndRandom()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testMixIterAndRandom()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
 71: build:
-71: [19:07:10] Finished: testRemoveHs()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] Finished: testRemoveHs()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] Finished: testGetItemText()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testGetItemText()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] Finished: testForwardSDSupplier()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testForwardSDSupplier()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] Finished: testMissingCRSDSupplier()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testMissingCRSDSupplier()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] Finished: testIssue3482695()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testIssue3482695()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] ERROR: Cannot convert 'foo' to unsigned int on line 557
-71: [19:07:10] ERROR: moving to the beginning of the next molecule
-71: [19:07:10] Finished: testIssue3525673()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] ERROR: Cannot convert 'foo' to unsigned int on line 557
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] Finished: testIssue3525673()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] Finished: testBlankLinesInProps()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testBlankLinesInProps()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] Finished: testSkipLines()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testSkipLines()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] Finished: testGitHub23()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testGitHub23()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:10] Finished: testGitHub88()
-71: [19:07:10] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testGitHub88()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:10] -----------------------------------------
-71: [19:07:11] Finished: testGitHub2285()
-71: [19:07:11] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testGitHub2285()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:11] -----------------------------------------
-71: [19:07:11] SMILES Parse Error: unclosed ring for input: 'c1ccccc'
-71: [19:07:11] ERROR: Smiles parse error on line 1
-71: [19:07:11] ERROR: Cannot create molecule from : 'c1ccccc'
-71: [19:07:11] SMILES Parse Error: extra open parentheses for input: 'C(C'
-71: [19:07:11] ERROR: Smiles parse error on line 3
-71: [19:07:11] ERROR: Cannot create molecule from : 'C(C'
-71: [19:07:11] Explicit valence for atom # 1 C, 5, is greater than permitted
-71: [19:07:11] ERROR: Could not sanitize molecule on line 5
-71: [19:07:11] ERROR: Explicit valence for atom # 1 C, 5, is greater than permitted
-71: [19:07:11] Explicit valence for atom # 1 F, 2, is greater than permitted
-71: [19:07:11] ERROR: Could not sanitize molecule ending on line 21
-71: [19:07:11] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted
-71: [19:07:11] Explicit valence for atom # 1 F, 2, is greater than permitted
-71: [19:07:11] ERROR: Could not sanitize molecule ending on line 21
-71: [19:07:11] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted
-71: [19:07:11] Explicit valence for atom # 1 F, 2, is greater than permitted
-71: [19:07:11] ERROR: Could not sanitize molecule ending on line 21
-71: [19:07:11] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted
-71: [19:07:11] ERROR: Atom line too short: '   -9.6' on line 28
-71: [19:07:11] ERROR: moving to the beginning of the next molecule
-71: [19:07:11] Explicit valence for atom # 1 F, 2, is greater than permitted
-71: [19:07:11] ERROR: Could not sanitize molecule ending on line 21
-71: [19:07:11] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted
-71: [19:07:11] ERROR: Atom line too short: '   -9.6' on line 28
-71: [19:07:11] ERROR: moving to the beginning of the next molecule
-71: [19:07:11] Finished: testGitHub2479()
-71: [19:07:11] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] SMILES Parse Error: unclosed ring for input: 'c1ccccc'
+71: [01:59:19] ERROR: Smiles parse error on line 1
+71: [01:59:19] ERROR: Cannot create molecule from : 'c1ccccc'
+71: [01:59:19] SMILES Parse Error: extra open parentheses for input: 'C(C'
+71: [01:59:19] ERROR: Smiles parse error on line 3
+71: [01:59:19] ERROR: Cannot create molecule from : 'C(C'
+71: [01:59:19] Explicit valence for atom # 1 C, 5, is greater than permitted
+71: [01:59:19] ERROR: Could not sanitize molecule on line 5
+71: [01:59:19] ERROR: Explicit valence for atom # 1 C, 5, is greater than permitted
+71: [01:59:19] Explicit valence for atom # 1 F, 2, is greater than permitted
+71: [01:59:19] ERROR: Could not sanitize molecule ending on line 21
+71: [01:59:19] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted
+71: [01:59:19] Explicit valence for atom # 1 F, 2, is greater than permitted
+71: [01:59:19] ERROR: Could not sanitize molecule ending on line 21
+71: [01:59:19] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted
+71: [01:59:19] Explicit valence for atom # 1 F, 2, is greater than permitted
+71: [01:59:19] ERROR: Could not sanitize molecule ending on line 21
+71: [01:59:19] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted
+71: [01:59:19] ERROR: Atom line too short: '   -9.6' on line 28
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] Explicit valence for atom # 1 F, 2, is greater than permitted
+71: [01:59:19] ERROR: Could not sanitize molecule ending on line 21
+71: [01:59:19] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted
+71: [01:59:19] ERROR: Atom line too short: '   -9.6' on line 28
+71: [01:59:19] ERROR: moving to the beginning of the next molecule
+71: [01:59:19] Finished: testGitHub2479()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:11] -----------------------------------------
-71: [19:07:11] 
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] 
 71: 
 71: ****
 71: Invariant Violation
@@ -27853,87 +27906,75 @@
 71: Stacktrace:
 71:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 71:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-71:  2# 0xF7B103E2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+71:  2# 0xB6EC63E2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 71:  3# RDKit::v2::FileParsers::MaeMolSupplier::next() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-71:  4# 0x00ABDB4E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
-71:  5# 0x00ABCC2C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
-71:  6# 0xF74E04FA in /lib/arm-linux-gnueabihf/libc.so.6
+71:  4# 0x00506B4E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
+71:  5# 0x00505C2C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolSupplier
+71:  6# 0xB68964FA in /lib/arm-linux-gnueabihf/libc.so.6
 71:  7# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 71: ----------
 71: ****
 71: 
-71: [19:07:11] Finished: testGitHub2881()
-71: [19:07:11] -----------------------------------------
+71: [01:59:19] Finished: testGitHub2881()
+71: [01:59:19] -----------------------------------------
 71: 
-71: [19:07:11] -----------------------------------------
-71: [19:07:11] Finished: testGitHub3517()
-71: [19:07:11] -----------------------------------------
+71: [01:59:19] -----------------------------------------
+71: [01:59:19] Finished: testGitHub3517()
+71: [01:59:19] -----------------------------------------
 71: 
- 67/230 Test  #71: testMolSupplier ........................   Passed    5.40 sec
+ 68/230 Test  #71: testMolSupplier ........................   Passed    0.79 sec
 test 72
         Start  72: testGeneralFileReader
 
 72: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testGeneralFileReader
 72: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 72: Test timeout computed to be: 1500
-72: [19:07:11] 
+72: [01:59:19] 
 72: -----------------------------------------
-72: [19:07:11] Finished: testDetermineFormat()
-72: [19:07:11] -----------------------------------------
+72: [01:59:19] Finished: testDetermineFormat()
+72: [01:59:19] -----------------------------------------
 72: 
-72: [19:07:11] 
+72: [01:59:19] 
 72: -----------------------------------------
-72: [19:07:12] Finished: testSdf()
-72: [19:07:12] -----------------------------------------
+72: [01:59:19] Finished: testSdf()
+72: [01:59:19] -----------------------------------------
 72: 
-72: [19:07:12] 
+72: [01:59:19] 
 72: -----------------------------------------
-72: [19:07:12] Finished: testSmi()
-72: [19:07:12] -----------------------------------------
+72: [01:59:19] Finished: testSmi()
+72: [01:59:19] -----------------------------------------
 72: 
-72: [19:07:12] 
+72: [01:59:19] 
 72: -----------------------------------------
-72: [19:07:13] Finished: testMae()
-72: [19:07:13] -----------------------------------------
-72: 
-72: [19:07:13] 
-72: -----------------------------------------
-72: [19:07:13] Finished: testTdt()
-72: [19:07:13] -----------------------------------------
-72: 
- 68/230 Test  #72: testGeneralFileReader ..................   Passed    1.70 sec
+50: Randomness seeded to: 2190253978
+50: ===============================================================================
+50: All tests passed (14835 assertions in 14 test cases)
+50: 
+ 69/230 Test  #50: canonTestsCatch ........................   Passed   48.45 sec
 test 73
         Start  73: testMultithreadedMolSupplier
 
 73: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMultithreadedMolSupplier
 73: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 73: Test timeout computed to be: 1500
-73: [19:07:13] 
-73: -----------------------------------------
-27: Checking against /build/reproducible-path/rdkit-202409.2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
-27: All 191 tests passed
-27:   done
-27: -------------------------------------
-27: Unit tests for all MMFF constraint terms.
-27: 10.0003
-27:   done
-27: -------------------------------------
-27: Unit test for MMFF TorsionConstraint close to 0 degrees.
-27:   done
-27: -------------------------------------
-27: Unit tests for copying MMFF ForceFields.
-27:   done
-27: -------------------------------------
-27: Unit test for MMFF butane scan.
-27:   done
- 69/230 Test  #27: testMMFFForceField .....................   Passed  278.66 sec
+72: [01:59:19] Finished: testMae()
+72: [01:59:19] -----------------------------------------
+72: 
+72: [01:59:19] 
+72: -----------------------------------------
+72: [01:59:19] Finished: testTdt()
+72: [01:59:19] -----------------------------------------
+72: 
+ 70/230 Test  #72: testGeneralFileReader ..................   Passed    0.30 sec
 test 74
         Start  74: testMolWriter
 
 74: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMolWriter
 74: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 74: Test timeout computed to be: 1500
-74: [19:07:52] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
+73: [01:59:19] 
+73: -----------------------------------------
+74: [01:59:20] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
 74: 0.40201265 0.40201265
 74: -0.13299436 -0.13299436
 74: 1.00000017 1.00000017
@@ -27955,23 +27996,23 @@
 74: 3.0077234 3.0077234
 74: 0.37399312 0.37399312
 74: -0.07713336 -0.07713336
-74: [19:07:52] bond with order 0 found on line 11. This is not part of the MDL specification.
-74: [19:07:52] bond with order 0 found on line 16. This is not part of the MDL specification.
- 70/230 Test  #74: testMolWriter ..........................   Passed    4.94 sec
+74: [01:59:20] bond with order 0 found on line 11. This is not part of the MDL specification.
+74: [01:59:20] bond with order 0 found on line 16. This is not part of the MDL specification.
+ 71/230 Test  #74: testMolWriter ..........................   Passed    1.32 sec
 test 75
         Start  75: testTplParser
 
 75: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testTplParser
 75: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 75: Test timeout computed to be: 1500
- 71/230 Test  #75: testTplParser ..........................   Passed    0.60 sec
+ 72/230 Test  #75: testTplParser ..........................   Passed    0.14 sec
 test 76
         Start  76: testMol2ToMol
 
 76: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testMol2ToMol
 76: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 76: Test timeout computed to be: 1500
- 72/230 Test  #76: testMol2ToMol ..........................   Passed    0.55 sec
+ 73/230 Test  #76: testMol2ToMol ..........................   Passed    0.23 sec
 test 77
         Start  77: testSequence
 
@@ -28962,40 +29003,40 @@
 77: CONECT   27   28   28   29
 77: END
 77: 
- 73/230 Test  #77: testSequence ...........................   Passed    1.00 sec
+ 74/230 Test  #77: testSequence ...........................   Passed    0.36 sec
 test 78
         Start  78: testExtendedStereoParsing
 
 78: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testExtendedStereoParsing
 78: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 78: Test timeout computed to be: 1500
- 74/230 Test  #78: testExtendedStereoParsing ..............   Passed    0.64 sec
+ 75/230 Test  #78: testExtendedStereoParsing ..............   Passed    0.14 sec
 test 79
         Start  79: fileParsersCatchTest
 
 79: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
 79: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 79: Test timeout computed to be: 1500
-79: Randomness seeded to: 875687672
-79: [19:07:56] SGroup SAP line too short: 'M  SAP   1  1   8' on line 29
-79: [19:07:56] SGroup SAP line too short: 'M  SAP   1  1   8' on line 28
-79: [19:07:56] Could not infer missing lvIdx on malformed SAP line for SGroup 1
-79: [19:07:56] SGroup 1 is invalid and will be ignored
-79: [19:07:56] SGroup SAP line too short: 'M  SAP   1  1   8' on line 28
-79: [19:07:56] Could not infer missing lvIdx on malformed SAP line for SGroup 1
-79: [19:07:56] SGroup 1 is invalid and will be ignored
-79: [19:07:56] SGroup SAP line too short: 'M  SAP   1  1   8' on line 35
-79: [19:07:56] SGroup SAP line too short: 'M  SAP   2  1  12' on line 39
-79: [19:07:56] SGroup SAP line too short: 'M  SAP   1  1   8' on line 34
-79: [19:07:56] SGroup SAP line too short: 'M  SAP   2  1  12' on line 38
-79: [19:07:56] Could not infer missing lvIdx on malformed SAP line for SGroup 1
-79: [19:07:56] SGroup 1 is invalid and will be ignored
-79: [19:07:56] SGroup SAP line too short: 'M  SAP   1  1   8' on line 34
-79: [19:07:56] SGroup SAP line too short: 'M  SAP   2  1  12' on line 39
-79: [19:07:56] Could not infer missing lvIdx on malformed SAP line for SGroup 1
-79: [19:07:56] SGroup 1 is invalid and will be ignored
-79: [19:07:56] SGroup 3 referenced on line 40 not found.
-79: [19:07:56] 
+79: Randomness seeded to: 1003769328
+79: [01:59:22] SGroup SAP line too short: 'M  SAP   1  1   8' on line 29
+79: [01:59:22] SGroup SAP line too short: 'M  SAP   1  1   8' on line 28
+79: [01:59:22] Could not infer missing lvIdx on malformed SAP line for SGroup 1
+79: [01:59:22] SGroup 1 is invalid and will be ignored
+79: [01:59:22] SGroup SAP line too short: 'M  SAP   1  1   8' on line 28
+79: [01:59:22] Could not infer missing lvIdx on malformed SAP line for SGroup 1
+79: [01:59:22] SGroup 1 is invalid and will be ignored
+79: [01:59:22] SGroup SAP line too short: 'M  SAP   1  1   8' on line 35
+79: [01:59:22] SGroup SAP line too short: 'M  SAP   2  1  12' on line 39
+79: [01:59:22] SGroup SAP line too short: 'M  SAP   1  1   8' on line 34
+79: [01:59:22] SGroup SAP line too short: 'M  SAP   2  1  12' on line 38
+79: [01:59:22] Could not infer missing lvIdx on malformed SAP line for SGroup 1
+79: [01:59:22] SGroup 1 is invalid and will be ignored
+79: [01:59:22] SGroup SAP line too short: 'M  SAP   1  1   8' on line 34
+79: [01:59:22] SGroup SAP line too short: 'M  SAP   2  1  12' on line 39
+79: [01:59:22] Could not infer missing lvIdx on malformed SAP line for SGroup 1
+79: [01:59:22] SGroup 1 is invalid and will be ignored
+79: [01:59:22] SGroup 3 referenced on line 40 not found.
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29008,23 +29049,23 @@
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::SubstanceGroup::addCState(unsigned int, RDGeom::Point3D const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  3# RDKit::SGroupParsing::ParseSGroupV2000SBVLine(std::map<int, RDKit::SubstanceGroup, std::less<int>, std::allocator<std::pair<int const, RDKit::SubstanceGroup> > >&, RDKit::RWMol*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  4# 0xF790BCC2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  4# 0xB6E2ACC2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  5# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  7# 0x00618ABA in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  8# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  7# 0x00495ABA in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  8# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 15# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] SGroup 3 referenced on line 40 not found.
-79: [19:07:56] 
+79: [01:59:22] SGroup 3 referenced on line 40 not found.
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29037,28 +29078,28 @@
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::SubstanceGroup::addCState(unsigned int, RDGeom::Point3D const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  3# RDKit::SGroupParsing::ParseSGroupV2000SBVLine(std::map<int, RDKit::SubstanceGroup, std::less<int>, std::allocator<std::pair<int const, RDKit::SubstanceGroup> > >&, RDKit::RWMol*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  4# 0xF790BCC2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  4# 0xB6E2ACC2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  5# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  7# 0x00618B32 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  8# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  7# 0x00495B32 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  8# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 15# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] no bonds
-79: [19:07:56] SGroup 1 is invalid and will be ignored
-79: [19:07:56] SGroup line too short: 'M  SBV   1   6' on line 42
-79: [19:07:56] SGroup 1 is invalid and will be ignored
-79: [19:07:56] SGroup line too short: 'M  SBL   2  3   9  10' on line 46
-79: [19:07:56] SGroup 2 is invalid and will be ignored
-79: [19:07:56] 
+79: [01:59:22] no bonds
+79: [01:59:22] SGroup 1 is invalid and will be ignored
+79: [01:59:22] SGroup line too short: 'M  SBV   1   6' on line 42
+79: [01:59:22] SGroup 1 is invalid and will be ignored
+79: [01:59:22] SGroup line too short: 'M  SBL   2  3   9  10' on line 46
+79: [01:59:22] SGroup 2 is invalid and will be ignored
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29072,22 +29113,22 @@
 79:  2# RDKit::ROMol::getUniqueBondWithBookmark(int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  3# RDKit::SubstanceGroup::addBondWithBookmark(int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  4# RDKit::SGroupParsing::ParseSGroupV2000VectorDataLine(std::map<int, RDKit::SubstanceGroup, std::less<int>, std::allocator<std::pair<int const, RDKit::SubstanceGroup> > >&, RDKit::RWMol*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  5# 0xF790BB9A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  5# 0xB6E2AB9A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  8# 0x006192F6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  8# 0x004962F6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 16# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29101,23 +29142,23 @@
 79:  2# RDKit::ROMol::getUniqueBondWithBookmark(int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  3# RDKit::SubstanceGroup::addBondWithBookmark(int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  4# RDKit::SGroupParsing::ParseSGroupV2000VectorDataLine(std::map<int, RDKit::SubstanceGroup, std::less<int>, std::allocator<std::pair<int const, RDKit::SubstanceGroup> > >&, RDKit::RWMol*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  5# 0xF790BB9A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  5# 0xB6E2AB9A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  8# 0x00619368 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  8# 0x00496368 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 16# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] bookmark not found
-79: [19:07:56] 
+79: [01:59:22] bookmark not found
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29131,24 +29172,24 @@
 79:  2# RDKit::SubstanceGroup::getBondType(unsigned int) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  3# RDKit::SubstanceGroup::addCState(unsigned int, RDGeom::Point3D const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  4# RDKit::SGroupParsing::ParseSGroupV2000SBVLine(std::map<int, RDKit::SubstanceGroup, std::less<int>, std::allocator<std::pair<int const, RDKit::SubstanceGroup> > >&, RDKit::RWMol*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  5# 0xF790BCC2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  5# 0xB6E2ACC2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  8# 0x00619368 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  8# 0x00496368 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 16# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] bond is not part of the SubstanceGroup
-79: [19:07:56] SGroup 2 is invalid and will be ignored
-79: [19:07:56] 
+79: [01:59:22] bond is not part of the SubstanceGroup
+79: [01:59:22] SGroup 2 is invalid and will be ignored
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29162,22 +29203,22 @@
 79:  2# RDKit::ROMol::getUniqueAtomWithBookmark(int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  3# RDKit::SubstanceGroup::addAtomWithBookmark(int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  4# RDKit::SGroupParsing::ParseSGroupV2000VectorDataLine(std::map<int, RDKit::SubstanceGroup, std::less<int>, std::allocator<std::pair<int const, RDKit::SubstanceGroup> > >&, RDKit::RWMol*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  5# 0xF790BB9A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  5# 0xB6E2AB9A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  8# 0x006196EC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  8# 0x004966EC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 16# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29191,26 +29232,26 @@
 79:  2# RDKit::ROMol::getUniqueAtomWithBookmark(int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  3# RDKit::SubstanceGroup::addAtomWithBookmark(int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitGraphMol.so.1
 79:  4# RDKit::SGroupParsing::ParseSGroupV2000VectorDataLine(std::map<int, RDKit::SubstanceGroup, std::less<int>, std::allocator<std::pair<int const, RDKit::SubstanceGroup> > >&, RDKit::RWMol*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  5# 0xF790BB9A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  5# 0xB6E2AB9A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  8# 0x00619764 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  8# 0x00496764 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 16# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] bookmark not found
-79: [19:07:56] Neither beginning nor ending atoms of bond 9 is in this SubstanceGroup.
-79: [19:07:56] SGroup 2 is invalid and will be ignored
-79: [19:07:56] WARNING: final character of V3000 array is not ')'
-79: [19:07:56] 
+79: [01:59:22] bookmark not found
+79: [01:59:22] Neither beginning nor ending atoms of bond 9 is in this SubstanceGroup.
+79: [01:59:22] SGroup 2 is invalid and will be ignored
+79: [01:59:22] WARNING: final character of V3000 array is not ')'
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29228,20 +29269,20 @@
 79:  6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  9# 0x0061791E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 16# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  9# 0x0049491E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 16# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 17# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] WARNING: final character of V3000 array is not ')'
-79: [19:07:56] 
+79: [01:59:22] WARNING: final character of V3000 array is not ')'
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29259,22 +29300,22 @@
 79:  6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  9# 0x00617996 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 16# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  9# 0x00494996 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 16# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 17# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] bookmark not found
-79: [19:07:56] SGroup 1 is invalid and will be ignored
-79: [19:07:56] WARNING: final character of V3000 array is not ')'
-79: [19:07:56] 
+79: [01:59:22] bookmark not found
+79: [01:59:22] SGroup 1 is invalid and will be ignored
+79: [01:59:22] WARNING: final character of V3000 array is not ')'
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29292,20 +29333,20 @@
 79:  6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  9# 0x00617BE2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 16# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  9# 0x00494BE2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 16# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 17# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] WARNING: final character of V3000 array is not ')'
-79: [19:07:56] 
+79: [01:59:22] WARNING: final character of V3000 array is not ')'
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29323,21 +29364,21 @@
 79:  6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  9# 0x00617C5A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 16# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  9# 0x00494C5A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 16# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 17# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] bookmark not found
-79: [19:07:56] SGroup 1 is invalid and will be ignored
-79: [19:07:56] 
+79: [01:59:22] bookmark not found
+79: [01:59:22] SGroup 1 is invalid and will be ignored
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29355,19 +29396,19 @@
 79:  6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  9# 0x00617EA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 16# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  9# 0x00494EA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 16# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 17# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29385,21 +29426,21 @@
 79:  6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  9# 0x00617F1E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 16# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  9# 0x00494F1E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 16# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 17# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] bookmark not found
-79: [19:07:56] SGroup 2 is invalid and will be ignored
-79: [19:07:56] 
+79: [01:59:22] bookmark not found
+79: [01:59:22] SGroup 2 is invalid and will be ignored
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29417,19 +29458,19 @@
 79:  6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  9# 0x0061815A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 16# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  9# 0x0049515A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 16# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 17# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29447,29 +29488,29 @@
 79:  6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  9# 0x006181CC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 16# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  9# 0x004951CC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 16# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 17# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:56] bookmark not found
-79: [19:07:56] SGroup 2 is invalid and will be ignored
-79: [19:07:56] Explicit valence for atom # 2 O, 3, is greater than permitted
-79: [19:07:56] Explicit valence for atom # 1 O, 3, is greater than permitted
-79: [19:07:56] Explicit valence for atom # 1 C, 5, is greater than permitted
-79: [19:07:56] sanitize [19:07:56] UNK: [19:07:57] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
-79: [19:07:57] skipping block at line 7: 'BEGIN ATOM'
+79: [01:59:22] bookmark not found
+79: [01:59:22] SGroup 2 is invalid and will be ignored
+79: [01:59:22] Explicit valence for atom # 2 O, 3, is greater than permitted
+79: [01:59:22] Explicit valence for atom # 1 O, 3, is greater than permitted
+79: [01:59:22] Explicit valence for atom # 1 C, 5, is greater than permitted
+79: [01:59:22] sanitize [01:59:22] UNK: [01:59:22] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
+79: [01:59:22] skipping block at line 7: 'BEGIN ATOM'
 79: ATOM      1 CHLO CHL     0       0.000   0.000   0.000  1.00  0.00          CL  
 79: END
 79: 
-79: [19:07:57] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29481,20 +29522,20 @@
 79:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::v2::FileParsers::SDMolSupplier::next() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  3# 0x006407F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  4# 0x0060DA1A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  5# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  6# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  7# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  8# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  3# 0x004BD7F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  4# 0x0048AA1A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  5# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  6# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  7# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  8# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29506,20 +29547,20 @@
 79:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::v2::FileParsers::ForwardSDMolSupplier::next() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  3# 0x006407F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  4# 0x0060DB36 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  5# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  6# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  7# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  8# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  3# 0x004BD7F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  4# 0x0048AB36 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  5# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  6# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  7# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  8# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29531,20 +29572,20 @@
 79:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::v2::FileParsers::SmilesMolSupplier::next() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  3# 0x006407F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  4# 0x0060DDD2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  5# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  6# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  7# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  8# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  3# 0x004BD7F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  4# 0x0048ADD2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  5# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  6# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  7# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  8# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29556,20 +29597,20 @@
 79:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::v2::FileParsers::TDTMolSupplier::next() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  3# 0x006407F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  4# 0x0060DFFC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  5# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  6# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  7# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  8# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  3# 0x004BD7F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  4# 0x0048AFFC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  5# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  6# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  7# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  8# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29581,28 +29622,28 @@
 79:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::v2::FileParsers::MaeMolSupplier::next() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  3# 0x006407F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  4# 0x0060E196 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  5# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  6# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  7# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  8# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  3# 0x004BD7F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  4# 0x0048B196 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  5# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  6# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  7# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  8# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57] Found a SCD/SED line with missing/empty SDT specification at line 21
-79: [19:07:57] Found a SCD/SED line with missing/empty SDT specification at line 20
-79: [19:07:57] BEGIN SGROUP line not found on line 14
-79: [19:07:57]  Unhandled CTAB feature: 'Unsupported SGroup type '' on line 18'. Molecule skipped.
-79: [19:07:57] END SGROUP line not found on line 14
-79: [19:07:57] END SGROUP line not found on line 14
-79: [19:07:57] MRV_COORDINATE_BOND_TYPE SGroup with value 0 does not reference a query bond, ignoring.
-79: [19:07:57] MRV_COORDINATE_BOND_TYPE SGroup with value 1 does not reference a query bond, ignoring.
-79: [19:07:57] 
+79: [01:59:22] Found a SCD/SED line with missing/empty SDT specification at line 21
+79: [01:59:22] Found a SCD/SED line with missing/empty SDT specification at line 20
+79: [01:59:22] BEGIN SGROUP line not found on line 14
+79: [01:59:22]  Unhandled CTAB feature: 'Unsupported SGroup type '' on line 18'. Molecule skipped.
+79: [01:59:22] END SGROUP line not found on line 14
+79: [01:59:22] END SGROUP line not found on line 14
+79: [01:59:22] MRV_COORDINATE_BOND_TYPE SGroup with value 0 does not reference a query bond, ignoring.
+79: [01:59:22] MRV_COORDINATE_BOND_TYPE SGroup with value 1 does not reference a query bond, ignoring.
+79: [01:59:22] 
 79: 
 79: ****
 79: Range Error
@@ -29617,37 +29658,37 @@
 79:  3# RDKit::FileParserUtils::finishMolProcessing(RDKit::RWMol*, bool, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  4# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  5# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  6# 0x00640218 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  7# 0x00611E62 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  8# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  6# 0x004BD218 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  7# 0x0048EE62 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  8# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 15# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57] molecule does not contain a bond matching the MRV_COORDINATE_BOND_TYPE SGroup for bond 99, ignoring.
-79: [19:07:57] Multiple ATTCHPT values for atom 2 on line 9
-79: [19:07:57] Found a SCD/SED line with missing/empty SDT specification at line 12
-79: [19:07:57] SMARTS Parse Error: syntax error while parsing: [#6;R
-79: [19:07:57] SMARTS Parse Error: Failed parsing SMARTS '[#6;R' for input: '[#6;R'
-79: [19:07:57] SMARTS for SMARTSQ '[#6;R' could not be parsed or has no atoms. Ignoring it.
-79: [19:07:57] Skipping empty SMARTS value for SMARTSQ.
-79: [19:07:57] unrecognized QUERYOP '>' for SMARTSQ. Query ignored.
-79: [19:07:57] Found a SCD/SED line with missing/empty SDT specification at line 12
-79: [19:07:57] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-79: [19:07:57] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-79: [19:07:57] WARNING: Skipping property bar because the value includes an illegal blank line
-79: [19:07:57] WARNING: Skipping property baz because the value includes an illegal blank line
-79: [19:07:57] WARNING: Skipping property bletch
+79: [01:59:22] molecule does not contain a bond matching the MRV_COORDINATE_BOND_TYPE SGroup for bond 99, ignoring.
+79: [01:59:22] Multiple ATTCHPT values for atom 2 on line 9
+79: [01:59:22] Found a SCD/SED line with missing/empty SDT specification at line 12
+79: [01:59:22] SMARTS Parse Error: syntax error while parsing: [#6;R
+79: [01:59:22] SMARTS Parse Error: Failed parsing SMARTS '[#6;R' for input: '[#6;R'
+79: [01:59:22] SMARTS for SMARTSQ '[#6;R' could not be parsed or has no atoms. Ignoring it.
+79: [01:59:22] Skipping empty SMARTS value for SMARTSQ.
+79: [01:59:22] unrecognized QUERYOP '>' for SMARTSQ. Query ignored.
+79: [01:59:22] Found a SCD/SED line with missing/empty SDT specification at line 12
+79: [01:59:22] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+79: [01:59:22] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+79: [01:59:22] WARNING: Skipping property bar because the value includes an illegal blank line
+79: [01:59:22] WARNING: Skipping property baz because the value includes an illegal blank line
+79: [01:59:22] WARNING: Skipping property bletch
 79: nope because the name includes a newline
-79: [19:07:57] WARNING: Skipping property bletch
+79: [01:59:22] WARNING: Skipping property bletch
 79: nope2 because the name includes a newline
-79: [19:07:57] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Post-condition Violation
@@ -29659,25 +29700,25 @@
 79:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  3# 0xF78FBEAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  4# 0xF7906AA4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  5# 0xF7907604 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  3# 0xB6E1AEAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  4# 0xB6E25AA4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  5# 0xB6E26604 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  9# 0x005EFA48 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 16# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  9# 0x0046CA48 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 16# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 17# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Post-condition Violation
@@ -29689,25 +29730,25 @@
 79:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  3# 0xF78FBEAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  4# 0xF7906AA4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  5# 0xF7907604 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  3# 0xB6E1AEAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  4# 0xB6E25AA4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  5# 0xB6E26604 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  9# 0x005EF502 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 16# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  9# 0x0046C502 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 16# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 17# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Post-condition Violation
@@ -29719,24 +29760,24 @@
 79:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  3# 0xF78FBEAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  4# 0xF79052B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  3# 0xB6E1AEAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  4# 0xB6E242B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  5# RDKit::FileParserUtils::ParseV2000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  8# 0x005EFA18 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  8# 0x0046CA18 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 16# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Post-condition Violation
@@ -29748,25 +29789,25 @@
 79:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  3# 0xF78FBEAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  4# 0xF79052B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  3# 0xB6E1AEAE in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  4# 0xB6E242B4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  5# RDKit::FileParserUtils::ParseV2000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  8# 0x005EF7F4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 13# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 14# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 15# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  8# 0x0046C7F4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 13# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 14# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 15# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 16# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57]  atom 3 has a negative isotope value. line:  15
-79: [19:07:57] 
+79: [01:59:22]  atom 3 has a negative isotope value. line:  15
+79: [01:59:22] 
 79: 
 79: ****
 79: Invariant Violation
@@ -29777,22 +29818,22 @@
 79: Stacktrace:
 79:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-79:  2# 0xF79888C4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
+79:  2# 0xB6EA78C4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  3# RDKit::v2::FileParsers::MaeMolSupplier::next() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  4# 0x006407F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  5# 0x0061D222 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  6# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  7# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  8# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 12# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  4# 0x004BD7F0 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  5# 0x0049A222 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  6# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  7# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  8# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 12# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 13# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:57] 
+79: [01:59:22] 
 79: 
 79: ****
 79: Pre-condition Violation
@@ -29805,161 +29846,172 @@
 79:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 79:  2# RDKit::v2::FileParsers::MaeMolSupplier::init() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
 79:  3# RDKit::v2::FileParsers::MaeMolSupplier::reset() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFileParsers.so.1
-79:  4# 0x0061D4B6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  5# 0x0066EF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  6# 0x0066F5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  7# 0x0066F918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  8# 0x00650BA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79:  9# 0x00650F7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 10# 0x005E932E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
-79: 11# 0xF73724FA in /lib/arm-linux-gnueabihf/libc.so.6
+79:  4# 0x0049A4B6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  5# 0x004EBF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  6# 0x004EC5E8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  7# 0x004EC918 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  8# 0x004CDBA8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79:  9# 0x004CDF7C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 10# 0x0046632E in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/fileParsersCatchTest
+79: 11# 0xB68914FA in /lib/arm-linux-gnueabihf/libc.so.6
 79: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 79: ----------
 79: ****
 79: 
-79: [19:07:58] ERROR: molecules without atoms cannot be exported to Maestro files.
-79: [19:07:58] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-79: [19:07:58] ERROR: the mol cannot be kekulized, and will not be written to the output file.
-79: [19:07:58] ERROR: Bond 0 has a type that is not supported by maeparser. The mol will not be written to the output file.
-79: [19:07:58] WARNING: atom 1 in input Maestro file has atomic number '0', which is reserved for internal use, and not allowed in inputs. The atom will be ignored.[19:07:58] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
-79: [19:07:58] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-79: [19:07:58] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
-79: [19:07:58] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-73: [19:08:25] Finished: testSmiCorrectness()
-73: [19:08:25] -----------------------------------------
+79: [01:59:22] ERROR: molecules without atoms cannot be exported to Maestro files.
+79: [01:59:22] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+79: [01:59:22] ERROR: the mol cannot be kekulized, and will not be written to the output file.
+79: [01:59:22] ERROR: Bond 0 has a type that is not supported by maeparser. The mol will not be written to the output file.
+79: [01:59:22] WARNING: atom 1 in input Maestro file has atomic number '0', which is reserved for internal use, and not allowed in inputs. The atom will be ignored.[01:59:22] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
+79: [01:59:22] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+79: [01:59:22] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D.
+79: [01:59:22] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+73: [01:59:39] Finished: testSmiCorrectness()
+73: [01:59:39] -----------------------------------------
 73: 
-73: [19:08:25] 
+73: [01:59:39] 
 73: -----------------------------------------
-73: [19:08:25] Spurious data before the first property will be ignored
-73: [19:08:25] Property <ID> will be truncated after the first blank line
-73: [19:08:25] Property <ID> will be truncated after the first blank line
-73: [19:08:25] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
-73: [19:08:27] Finished: testSDCorrectness()
-73: [19:08:27] -----------------------------------------
+73: [01:59:39] Spurious data before the first property will be ignored
+73: [01:59:39] Property <ID> will be truncated after the first blank line
+73: [01:59:39] Property <ID> will be truncated after the first blank line
+73: [01:59:39] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
+73: [01:59:40] Finished: testSDCorrectness()
+73: [01:59:40] -----------------------------------------
 73: 
- 75/230 Test  #73: testMultithreadedMolSupplier ...........   Passed   74.54 sec
+ 76/230 Test  #73: testMultithreadedMolSupplier ...........   Passed   20.86 sec
 test 80
         Start  80: testPropertyLists
 
 80: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/testPropertyLists
 80: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 80: Test timeout computed to be: 1500
-80: Randomness seeded to: 1467495651
+80: Randomness seeded to: 3532654768
 80: ===============================================================================
 80: All tests passed (95 assertions in 4 test cases)
 80: 
- 76/230 Test  #80: testPropertyLists ......................   Passed    0.35 sec
+ 77/230 Test  #80: testPropertyLists ......................   Passed    0.16 sec
 test 81
         Start  81: XYZFileParserCatchTest
 
 81: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/XYZFileParserCatchTest
 81: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 81: Test timeout computed to be: 1500
-81: Randomness seeded to: 3731370162
+81: Randomness seeded to: 1295851138
 81: ===============================================================================
 81: All tests passed (100 assertions in 2 test cases)
 81: 
- 77/230 Test  #81: XYZFileParserCatchTest .................   Passed    0.32 sec
+ 78/230 Test  #81: XYZFileParserCatchTest .................   Passed    0.13 sec
 test 82
         Start  82: cdxmlParserCatchTest
 
 82: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/cdxmlParserCatchTest
 82: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 82: Test timeout computed to be: 1500
-82: Randomness seeded to: 3927773400
-82: [19:08:29] Invalid or missing fragment id from CDXML fragment, assigning new one...
-82: [19:08:29] Explicit valence for atom # 3 N, 4, is greater than permitted
-82: [19:08:29] CDXMLParser: failed sanitizing skipping fragment 32
-82: [19:08:29] Bad bond in CDXML skipping fragment 58...
-82: [19:08:29] Invalid or missing fragment id from CDXML fragment, assigning new one...
-82: [19:08:29] Bad bond in CDXML skipping fragment 58...
-82: [19:08:29] WARNING: not removing hydrogen atom without neighbors
-82: [19:08:29] WARNING: not removing hydrogen atom without neighbors
-82: [19:08:29] WARNING: not removing hydrogen atom without neighbors
-82: [19:08:29] WARNING: not removing hydrogen atom without neighbors
-82: [19:08:29] WARNING: not removing hydrogen atom without neighbors
-82: [19:08:29] WARNING: not removing hydrogen atom without neighbors
-82: [19:08:29] WARNING: not removing hydrogen atom without neighbors
-82: [19:08:29] WARNING: not removing hydrogen atom without neighbors
-82: [19:08:29] WARNING: not removing hydrogen atom without neighbors
-82: [19:08:29] WARNING: not removing hydrogen atom without neighbors
-82: [19:08:29] CDXMLParser: Schema 80180 step 80181 ReactionStepAgents reaction fragment 64603 not found in document.
-82: [19:08:29] Incomplete atom labelling, cannot make bond
-82: [19:08:29] Incomplete atom labelling, cannot make bond
-82: [19:08:29] Incomplete atom labelling, cannot make bond
-82: [19:08:30] Failed to parse XML fragment 5 node: n attribute: id: mydoghasfleas
-82: [19:08:30] Failed to parse XML fragment 5 node: n attribute: id: mydoghasfleas
-82: [19:08:30] Failed to parse XML fragment 5 node: b attribute: Order: slartibartfast
-82: [19:08:30] Failed to parse XML fragment 5 node: b attribute: Order: 5
-82: [19:08:30] Invalid or missing fragment id from CDXML fragment, assigning new one...
+82: Randomness seeded to: 3362052097
+82: [01:59:40] Invalid or missing fragment id from CDXML fragment, assigning new one...
+82: [01:59:40] Explicit valence for atom # 3 N, 4, is greater than permitted
+82: [01:59:40] CDXMLParser: failed sanitizing skipping fragment 32
+82: [01:59:40] Bad bond in CDXML skipping fragment 58...
+82: [01:59:40] Invalid or missing fragment id from CDXML fragment, assigning new one...
+82: [01:59:40] Bad bond in CDXML skipping fragment 58...
+82: [01:59:41] WARNING: not removing hydrogen atom without neighbors
+82: [01:59:41] WARNING: not removing hydrogen atom without neighbors
+82: [01:59:41] WARNING: not removing hydrogen atom without neighbors
+82: [01:59:41] WARNING: not removing hydrogen atom without neighbors
+82: [01:59:41] WARNING: not removing hydrogen atom without neighbors
+82: [01:59:41] WARNING: not removing hydrogen atom without neighbors
+82: [01:59:41] WARNING: not removing hydrogen atom without neighbors
+82: [01:59:41] WARNING: not removing hydrogen atom without neighbors
+82: [01:59:41] WARNING: not removing hydrogen atom without neighbors
+82: [01:59:41] WARNING: not removing hydrogen atom without neighbors
+82: [01:59:41] CDXMLParser: Schema 80180 step 80181 ReactionStepAgents reaction fragment 64603 not found in document.
+82: [01:59:41] Incomplete atom labelling, cannot make bond
+82: [01:59:41] Incomplete atom labelling, cannot make bond
+82: [01:59:41] Incomplete atom labelling, cannot make bond
+82: [01:59:41] Failed to parse XML fragment 5 node: n attribute: id: mydoghasfleas
+82: [01:59:41] Failed to parse XML fragment 5 node: n attribute: id: mydoghasfleas
+82: [01:59:41] Failed to parse XML fragment 5 node: b attribute: Order: slartibartfast
+82: [01:59:41] Failed to parse XML fragment 5 node: b attribute: Order: 5
+82: [01:59:41] Invalid or missing fragment id from CDXML fragment, assigning new one...
 82: ===============================================================================
 82: All tests passed (263 assertions in 7 test cases)
 82: 
- 78/230 Test  #82: cdxmlParserCatchTest ...................   Passed    1.91 sec
+ 79/230 Test  #82: cdxmlParserCatchTest ...................   Passed    0.89 sec
 test 83
         Start  83: molfileStereoCatchTest
 
 83: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/molfileStereoCatchTest
 83: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 83: Test timeout computed to be: 1500
-83: Randomness seeded to: 2034704686
-83: [19:08:30] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored.
-83: [19:08:30] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored.
-83: [19:08:30] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored.
-83: [19:08:30] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored.
+83: Randomness seeded to: 1116752139
+83: [01:59:41] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored.
+83: [01:59:41] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored.
+83: [01:59:41] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored.
+83: [01:59:41] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored.
 83: ===============================================================================
 83: All tests passed (142 assertions in 6 test cases)
 83: 
- 79/230 Test  #83: molfileStereoCatchTest .................   Passed    0.29 sec
+ 80/230 Test  #83: molfileStereoCatchTest .................   Passed    0.18 sec
 test 84
         Start  84: connectTheDotsTest
 
 84: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/connectTheDotsTest
 84: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 84: Test timeout computed to be: 1500
-84: Randomness seeded to: 3624327901
+84: Randomness seeded to: 3873985362
 84: ===============================================================================
 84: All tests passed (8 assertions in 1 test case)
 84: 
- 80/230 Test  #84: connectTheDotsTest .....................   Passed    0.23 sec
+ 81/230 Test  #84: connectTheDotsTest .....................   Passed    0.17 sec
 test 85
         Start  85: v2MolSuppliers
 
 85: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/v2MolSuppliers
 85: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 85: Test timeout computed to be: 1500
-85: Randomness seeded to: 2731733506
+85: Randomness seeded to: 1568455576
 85: ===============================================================================
 85: All tests passed (12 assertions in 5 test cases)
 85: 
- 81/230 Test  #85: v2MolSuppliers .........................   Passed    0.46 sec
+ 82/230 Test  #85: v2MolSuppliers .........................   Passed    0.19 sec
 test 86
         Start  86: v2FileParsersCatchTest
 
 86: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/v2FileParsersCatchTest
 86: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 86: Test timeout computed to be: 1500
-86: Randomness seeded to: 1642208057
+86: Randomness seeded to: 2245576717
 86: ===============================================================================
 86: All tests passed (6 assertions in 1 test case)
 86: 
- 82/230 Test  #86: v2FileParsersCatchTest .................   Passed    0.44 sec
+ 83/230 Test  #86: v2FileParsersCatchTest .................   Passed    0.21 sec
 test 87
         Start  87: multithreadedSupplierCatchTest
 
 87: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/multithreadedSupplierCatchTest
 87: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers
 87: Test timeout computed to be: 1500
-87: Randomness seeded to: 1943468034
-87: [19:08:35] Explicit valence for atom # 9 N, 6, is greater than permitted
-87: [19:08:36] Explicit valence for atom # 3 Al, 6, is greater than permitted
-87: [19:08:36] Explicit valence for atom # 4 Al, 6, is greater than permitted
-87: [19:08:37] Explicit valence for atom # 10 Si, 6, is greater than permitted
-50: Randomness seeded to: 338730973
-50: ===============================================================================
-50: All tests passed (14835 assertions in 14 test cases)
-50: 
- 83/230 Test  #50: canonTestsCatch ........................   Passed  240.74 sec
+87: Randomness seeded to: 2648695068
+87: [01:59:44] Explicit valence for atom # 9 N, 6, is greater than permitted
+87: [01:59:44] Explicit valence for atom # 3 Al, 6, is greater than permitted
+87: [01:59:45] Explicit valence for atom # 4 Al, 6, is greater than permitted
+87: [01:59:45] Explicit valence for atom # 10 Si, 6, is greater than permitted
+87: [01:59:45] Explicit valence for atom # 2 O, 4, is greater than permitted
+87: [01:59:46] Explicit valence for atom # 3 Al, 6, is greater than permitted
+87: [01:59:46] Explicit valence for atom # 3 Be, 4, is greater than permitted
+87: [01:59:46] Explicit valence for atom # 27 P, 6, is greater than permitted
+87: [01:59:48] Explicit valence for atom # 9 N, 6, is greater than permitted
+87: [01:59:49] Explicit valence for atom # 3 Al, 6, is greater than permitted
+87: [01:59:49] Explicit valence for atom # 4 Al, 6, is greater than permitted
+87: [01:59:49] Explicit valence for atom # 10 Si, 6, is greater than permitted
+87: [01:59:50] Explicit valence for atom # 2 O, 4, is greater than permitted
+87: [01:59:50] Explicit valence for atom # 3 Al, 6, is greater than permitted
+87: [01:59:50] Explicit valence for atom # 3 Be, 4, is greater than permitted
+87: [01:59:50] Explicit valence for atom # 27 P, 6, is greater than permitted
+87: ===============================================================================
+87: All tests passed (21162 assertions in 3 test cases)
+87: 
+ 84/230 Test  #87: multithreadedSupplierCatchTest .........   Passed    8.86 sec
 test 88
         Start  88: testSubstructMatch
 
@@ -29990,13 +30042,9 @@
 88:  ----------------- Testing serial numbers on recursive queries
 88: Done
 88: 
-88: [19:08:38] -------------------------------------
-88: [19:08:38]     Test multithreading
+88: [01:59:51] -------------------------------------
+88: [01:59:51]     Test multithreading
 88: reading molecules
-87: [19:08:38] Explicit valence for atom # 2 O, 4, is greater than permitted
-87: [19:08:38] Explicit valence for atom # 3 Al, 6, is greater than permitted
-87: [19:08:38] Explicit valence for atom # 3 Be, 4, is greater than permitted
-87: [19:08:38] Explicit valence for atom # 27 P, 6, is greater than permitted
 88:  hits: 1111110111111111111111011111100011011011111101010111011110111101111111111111111111111011111011111110
 88: processing
 88:  launch :0
@@ -30019,34 +30067,34 @@
 88:  launch3 :2
 88:  launch3 :3
 88:  done
-88: [19:08:40]   done
-88: [19:08:40] -------------------------------------
-88: [19:08:40]     Test GitHub issue 15
-88: [19:08:40]   done
-88: [19:08:40] -------------------------------------
-88: [19:08:40]     Test GitHub issue 409
-88: [19:08:41]   done
-88: [19:08:41] -------------------------------------
-88: [19:08:41]     Test chiral matching
-88: [19:08:41]   done
-88: [19:08:41] -------------------------------------
-88: [19:08:41]     Test GitHub issue 688: partially specified chiral substructure queries don't work properly
-88: [19:08:41]   done
-88: [19:08:41] -------------------------------------
-88: [19:08:41]     Test dative-bond matching
-88: [19:08:41]   done
-88: [19:08:41] -------------------------------------
-88: [19:08:41]     Test cis/trans matching
-88: [19:08:41]   done
-88: [19:08:41] -------------------------------------
-88: [19:08:41]     Test cis/trans matching part 2
-88: [19:08:41]   done
-88: [19:08:41] -------------------------------------
-88: [19:08:41]     Testing Github #1389: Substructure matching with chirality failure when query is built from SMARTS
-88: [19:08:41]   done
-88: [19:08:41] -------------------------------------
-88: [19:08:41]     Testing matching E/Z against Cis/Trans stereo bonds
-88: [19:08:41] 
+88: [01:59:52]   done
+88: [01:59:52] -------------------------------------
+88: [01:59:52]     Test GitHub issue 15
+88: [01:59:52]   done
+88: [01:59:52] -------------------------------------
+88: [01:59:52]     Test GitHub issue 409
+88: [01:59:52]   done
+88: [01:59:52] -------------------------------------
+88: [01:59:52]     Test chiral matching
+88: [01:59:52]   done
+88: [01:59:52] -------------------------------------
+88: [01:59:52]     Test GitHub issue 688: partially specified chiral substructure queries don't work properly
+88: [01:59:52]   done
+88: [01:59:52] -------------------------------------
+88: [01:59:52]     Test dative-bond matching
+88: [01:59:52]   done
+88: [01:59:52] -------------------------------------
+88: [01:59:52]     Test cis/trans matching
+88: [01:59:52]   done
+88: [01:59:52] -------------------------------------
+88: [01:59:52]     Test cis/trans matching part 2
+88: [01:59:52]   done
+88: [01:59:52] -------------------------------------
+88: [01:59:52]     Testing Github #1389: Substructure matching with chirality failure when query is built from SMARTS
+88: [01:59:52]   done
+88: [01:59:52] -------------------------------------
+88: [01:59:52]     Testing matching E/Z against Cis/Trans stereo bonds
+88: [01:59:52] 
 88: 
 88: ****
 88: Pre-condition Violation
@@ -30059,14 +30107,14 @@
 88:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 88:  2# RDKit::detail::ScoreMatchesByDegreeOfCoreSubstitution::ScoreMatchesByDegreeOfCoreSubstitution(RDKit::ROMol const&, RDKit::ROMol const&, std::vector<std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > >, std::allocator<std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > > > > const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitSubstructMatch.so.1
 88:  3# RDKit::getMostSubstitutedCoreMatch(RDKit::ROMol const&, RDKit::ROMol const&, std::vector<std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > >, std::allocator<std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > > > > const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitSubstructMatch.so.1
-88:  4# 0x0080BC44 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/testSubstructMatch
-88:  5# 0x00809FD2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/testSubstructMatch
-88:  6# 0xF75574FA in /lib/arm-linux-gnueabihf/libc.so.6
+88:  4# 0x00451C44 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/testSubstructMatch
+88:  5# 0x0044FFD2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/testSubstructMatch
+88:  6# 0xB68FF4FA in /lib/arm-linux-gnueabihf/libc.so.6
 88:  7# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 88: ----------
 88: ****
 88: 
-88: [19:08:41] 
+88: [01:59:52] 
 88: 
 88: ****
 88: Pre-condition Violation
@@ -30079,47 +30127,40 @@
 88:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 88:  2# RDKit::detail::ScoreMatchesByDegreeOfCoreSubstitution::ScoreMatchesByDegreeOfCoreSubstitution(RDKit::ROMol const&, RDKit::ROMol const&, std::vector<std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > >, std::allocator<std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > > > > const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitSubstructMatch.so.1
 88:  3# RDKit::sortMatchesByDegreeOfCoreSubstitution(RDKit::ROMol const&, RDKit::ROMol const&, std::vector<std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > >, std::allocator<std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > > > > const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitSubstructMatch.so.1
-88:  4# 0x0080BF40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/testSubstructMatch
-88:  5# 0x00809FD2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/testSubstructMatch
-88:  6# 0xF75574FA in /lib/arm-linux-gnueabihf/libc.so.6
+88:  4# 0x00451F40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/testSubstructMatch
+88:  5# 0x0044FFD2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/testSubstructMatch
+88:  6# 0xB68FF4FA in /lib/arm-linux-gnueabihf/libc.so.6
 88:  7# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 88: ----------
 88: ****
 88: 
-88: [19:08:41] -------------------------------------
-88: [19:08:41] Test substructure matching with a pathological case for symmetric SSSR
-87: [19:08:41] Explicit valence for atom # 9 N, 6, is greater than permitted
-88: [19:08:41] -------------------------------------
-88: [19:08:41] Test isAtomTerminalRGroupOrQueryHydrogen
- 84/230 Test  #88: testSubstructMatch .....................   Passed    2.89 sec
+88: [01:59:52] -------------------------------------
+88: [01:59:52] Test substructure matching with a pathological case for symmetric SSSR
+88: [01:59:52] -------------------------------------
+88: [01:59:52] Test isAtomTerminalRGroupOrQueryHydrogen
+ 85/230 Test  #88: testSubstructMatch .....................   Passed    1.52 sec
 test 89
         Start  89: substructTestCatch
 
 89: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/substructTestCatch
 89: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct
 89: Test timeout computed to be: 1500
-87: [19:08:41] Explicit valence for atom # 3 Al, 6, is greater than permitted
-87: [19:08:42] Explicit valence for atom # 4 Al, 6, is greater than permitted
-87: [19:08:42] Explicit valence for atom # 10 Si, 6, is greater than permitted
-89: Randomness seeded to: 3924158633
+89: Randomness seeded to: 2859704577
 89: ===============================================================================
 89: All tests passed (197 assertions in 9 test cases)
 89: 
- 85/230 Test  #89: substructTestCatch .....................   Passed    1.61 sec
+ 86/230 Test  #89: substructTestCatch .....................   Passed    1.02 sec
 test 90
         Start  90: testGenericGroups
 
 90: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GenericGroups/testGenericGroups
 90: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GenericGroups
 90: Test timeout computed to be: 1500
-87: [19:08:43] Explicit valence for atom # 2 O, 4, is greater than permitted
-87: [19:08:43] Explicit valence for atom # 3 Al, 6, is greater than permitted
-87: [19:08:43] Explicit valence for atom # 3 Be, 4, is greater than permitted
-87: [19:08:44] Explicit valence for atom # 27 P, 6, is greater than permitted
-87: ===============================================================================
-87: All tests passed (21162 assertions in 3 test cases)
-87: 
- 86/230 Test  #87: multithreadedSupplierCatchTest .........   Passed   12.66 sec
+90: Randomness seeded to: 3592899640
+90: ===============================================================================
+90: All tests passed (11480 assertions in 38 test cases)
+90: 
+ 87/230 Test  #90: testGenericGroups ......................   Passed    2.30 sec
 test 91
         Start  91: testReaction
 
@@ -30129,277 +30170,276 @@
 91: smi: O=C1CNC(=O)CN1
 91: 1: O=C1CNC(=O)CN1
 91: 2: COOC
-91: [19:08:44] SMARTS Parse Error: syntax error while parsing: [Q:1][C:2][C:3](=[O:4])[O:5]
-91: [19:08:44] SMARTS Parse Error: Failed parsing SMARTS '[Q:1][C:2][C:3](=[O:4])[O:5]' for input: '[Q:1][C:2][C:3](=[O:4])[O:5]'
+91: [01:59:56] SMARTS Parse Error: syntax error while parsing: [Q:1][C:2][C:3](=[O:4])[O:5]
+91: [01:59:56] SMARTS Parse Error: Failed parsing SMARTS '[Q:1][C:2][C:3](=[O:4])[O:5]' for input: '[Q:1][C:2][C:3](=[O:4])[O:5]'
 91: O=C1CNC(=O)CN1
-91: [19:08:44] product atom-mapping number 1 found multiple times.
-91: [19:08:44] mapped atoms in the reactants were not mapped in the products.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] mapped atoms in the reactants were not mapped in the products.
 91:   unmapped numbers are: 4 
-91: [19:08:44] atom 0 in product 0 has multiple charge specifications.
+79: ===============================================================================
+79: All tests passed (1586 assertions in 98 test cases)
+79: 
+ 88/230 Test  #79: fileParsersCatchTest ...................   Passed   34.57 sec
+test 92
+        Start  92: testReactionFingerprints
+
+92: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/testReactionFingerprints
+92: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions
+92: Test timeout computed to be: 1500
+91: [01:59:56] atom 0 in product 0 has multiple charge specifications.
 91:  mass: 15.0001
 91: Oc1ccccn1
 91: Oc1ccc[nH]1
-91: [19:08:45] SMARTS Parse Error: syntax error while parsing: ([C:1](=O)O.[C:2]
-91: [19:08:45] SMARTS Parse Error: Failed parsing SMARTS '([C:1](=O)O.[C:2]' for input: '([C:1](=O)O.[C:2]'
-91: [19:08:45] SMARTS Parse Error: syntax error while parsing: ([C:2]
-91: [19:08:45] SMARTS Parse Error: Failed parsing SMARTS '([C:2]' for input: '([C:2]'
-91: [19:08:45] SMARTS Parse Error: syntax error while parsing: [C:1](=O)O).[C:2]
-91: [19:08:45] SMARTS Parse Error: Failed parsing SMARTS '[C:1](=O)O).[C:2]' for input: '[C:1](=O)O).[C:2]'
-91: [19:08:45] SMARTS Parse Error: syntax error while parsing: [C:2])
-91: [19:08:45] SMARTS Parse Error: Failed parsing SMARTS '[C:2])' for input: '[C:2])'
-91: [19:08:45] SMILES Parse Error: syntax error while parsing: [Q:1][C:2][C:3](=[O:4])[O:5]
-91: [19:08:45] SMILES Parse Error: Failed parsing SMILES '[Q:1][C:2][C:3](=[O:4])[O:5]' for input: '[Q:1][C:2][C:3](=[O:4])[O:5]'
-91: [19:08:45] reactant 2 has no mapped atoms.
-91: [19:08:45] >> Atoms within one molecule have different RXN roles.
-91: [19:08:45] >> Fragment 0 not included in the reaction, atoms do not have a correct RXN role.
-91: [19:08:45] SMARTS Parse Error: syntax error while parsing: ([C:1][C:2]
-91: [19:08:45] SMARTS Parse Error: Failed parsing SMARTS '([C:1][C:2]' for input: '([C:1][C:2]'
-91: [19:08:45] SMARTS Parse Error: syntax error while parsing: ([C:2]
-91: [19:08:45] SMARTS Parse Error: Failed parsing SMARTS '([C:2]' for input: '([C:2]'
-91: [19:08:45] SMARTS Parse Error: syntax error while parsing: [C:1][C:2])
-91: [19:08:45] SMARTS Parse Error: Failed parsing SMARTS '[C:1][C:2])' for input: '[C:1][C:2])'
-91: [19:08:45] SMARTS Parse Error: syntax error while parsing: [C:1]).[C:2]
-91: [19:08:45] SMARTS Parse Error: Failed parsing SMARTS '[C:1]).[C:2]' for input: '[C:1]).[C:2]'
-91: [19:08:45] reactant 0 has no mapped atoms.
-91: [19:08:45] reactant 1 has no mapped atoms.
-91: [19:08:45] reactant 3 has no mapped atoms.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
-91: [19:08:45] product atom-mapping number 5 found multiple times.
-91: [19:08:45] product atom-mapping number 6 found multiple times.
-91: [19:08:45] product atom-mapping number 7 found multiple times.
-91: [19:08:45] product atom-mapping number 8 found multiple times.
-91: [19:08:45] product atom-mapping number 12 found multiple times.
-91: [19:08:45] product atom-mapping number 9 found multiple times.
-91: [19:08:45] product atom-mapping number 10 found multiple times.
-91: [19:08:45] product atom-mapping number 11 found multiple times.
-91: [19:08:45] reactant 0 has no mapped atoms.
-91: [19:08:45] reactant 1 has no mapped atoms.
-91: [19:08:45] reactant 3 has no mapped atoms.
-91: [19:08:45] reactant atom-mapping number 19 found multiple times.
-91: [19:08:45] reactant atom-mapping number 25 found multiple times.
-91: [19:08:45] reactant atom-mapping number 20 found multiple times.
-91: [19:08:45] reactant atom-mapping number 21 found multiple times.
-91: [19:08:45] reactant atom-mapping number 22 found multiple times.
-91: [19:08:45] reactant atom-mapping number 23 found multiple times.
-91: [19:08:45] reactant atom-mapping number 24 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
+92: [01:59:56] -------------------------------------
+92: [01:59:56]     Test Reaction StructuralFingerprint
+91: [01:59:56] SMARTS Parse Error: syntax error while parsing: ([C:1](=O)O.[C:2]
+91: [01:59:56] SMARTS Parse Error: Failed parsing SMARTS '([C:1](=O)O.[C:2]' for input: '([C:1](=O)O.[C:2]'
+91: [01:59:56] SMARTS Parse Error: syntax error while parsing: ([C:2]
+91: [01:59:56] SMARTS Parse Error: Failed parsing SMARTS '([C:2]' for input: '([C:2]'
+91: [01:59:56] SMARTS Parse Error: syntax error while parsing: [C:1](=O)O).[C:2]
+91: [01:59:56] SMARTS Parse Error: Failed parsing SMARTS '[C:1](=O)O).[C:2]' for input: '[C:1](=O)O).[C:2]'
+91: [01:59:56] SMARTS Parse Error: syntax error while parsing: [C:2])
+91: [01:59:56] SMARTS Parse Error: Failed parsing SMARTS '[C:2])' for input: '[C:2])'
+91: [01:59:56] SMILES Parse Error: syntax error while parsing: [Q:1][C:2][C:3](=[O:4])[O:5]
+91: [01:59:56] SMILES Parse Error: Failed parsing SMILES '[Q:1][C:2][C:3](=[O:4])[O:5]' for input: '[Q:1][C:2][C:3](=[O:4])[O:5]'
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+92: [01:59:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+92: [01:59:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+92: [01:59:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+92: [01:59:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+92: [01:59:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+91: [01:59:56] reactant 2 has no mapped atoms.
+92: [01:59:56] -------------------------------------
+92: [01:59:56]     Test Reaction DifferenceFingerprint
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use AtomPairGenerator
+92: [01:59:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+92: [01:59:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+92: [01:59:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+92: [01:59:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+ 89/230 Test  #92: testReactionFingerprints ...............   Passed    0.17 sec
+test 93
+        Start  93: testEnumeration
+
+93: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/testEnumeration
+93: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions
+93: Test timeout computed to be: 1500
+91: [01:59:56] >> Atoms within one molecule have different RXN roles.
+91: [01:59:56] >> Fragment 0 not included in the reaction, atoms do not have a correct RXN role.
+91: [01:59:56] SMARTS Parse Error: syntax error while parsing: ([C:1][C:2]
+91: [01:59:56] SMARTS Parse Error: Failed parsing SMARTS '([C:1][C:2]' for input: '([C:1][C:2]'
+91: [01:59:56] SMARTS Parse Error: syntax error while parsing: ([C:2]
+91: [01:59:56] SMARTS Parse Error: Failed parsing SMARTS '([C:2]' for input: '([C:2]'
+91: [01:59:56] SMARTS Parse Error: syntax error while parsing: [C:1][C:2])
+91: [01:59:56] SMARTS Parse Error: Failed parsing SMARTS '[C:1][C:2])' for input: '[C:1][C:2])'
+91: [01:59:56] SMARTS Parse Error: syntax error while parsing: [C:1]).[C:2]
+91: [01:59:56] SMARTS Parse Error: Failed parsing SMARTS '[C:1]).[C:2]' for input: '[C:1]).[C:2]'
+91: [01:59:56] reactant 0 has no mapped atoms.
+91: [01:59:56] reactant 1 has no mapped atoms.
+91: [01:59:56] reactant 3 has no mapped atoms.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 5 found multiple times.
+91: [01:59:56] product atom-mapping number 6 found multiple times.
+91: [01:59:56] product atom-mapping number 7 found multiple times.
+91: [01:59:56] product atom-mapping number 8 found multiple times.
+91: [01:59:56] product atom-mapping number 12 found multiple times.
+91: [01:59:56] product atom-mapping number 9 found multiple times.
+91: [01:59:56] product atom-mapping number 10 found multiple times.
+91: [01:59:56] product atom-mapping number 11 found multiple times.
+91: [01:59:56] reactant 0 has no mapped atoms.
+91: [01:59:56] reactant 1 has no mapped atoms.
+91: [01:59:56] reactant 3 has no mapped atoms.
+91: [01:59:56] reactant atom-mapping number 19 found multiple times.
+91: [01:59:56] reactant atom-mapping number 25 found multiple times.
+91: [01:59:56] reactant atom-mapping number 20 found multiple times.
+91: [01:59:56] reactant atom-mapping number 21 found multiple times.
+91: [01:59:56] reactant atom-mapping number 22 found multiple times.
+91: [01:59:56] reactant atom-mapping number 23 found multiple times.
+91: [01:59:56] reactant atom-mapping number 24 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
 91: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
 91: F[C@](Cl)(Br)ONO[C@](F)(Cl)Br
-91: [19:08:45] product atom-mapping number 5 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
-91: [19:08:45] product atom-mapping number 5 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 5 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 5 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
 91: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br
-91: [19:08:45] product atom-mapping number 5 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
-91: [19:08:45] product atom-mapping number 5 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 5 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 5 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
 91: F[C@](Cl)(Br)ONO[C@](F)(Cl)Br
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
 91: F[C@@](Cl)(Br)O[C@](F)(Cl)Br
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
 91: F[C@](Cl)(Br)O[C@](F)(Cl)Br
-91: [19:08:45] product atom-mapping number 4 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 4 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] mapped atoms in the reactants were not mapped in the products.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 4 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] mapped atoms in the reactants were not mapped in the products.
 91:   unmapped numbers are: 4 
-91: [19:08:45] product atom-mapping number 3 found multiple times.
-91: [19:08:45] product atom-mapping number 2 found multiple times.
-91: [19:08:45] product atom-mapping number 1 found multiple times.
-91: [19:08:45] mapped atoms in the reactants were not mapped in the products.
+91: [01:59:56] product atom-mapping number 3 found multiple times.
+91: [01:59:56] product atom-mapping number 2 found multiple times.
+91: [01:59:56] product atom-mapping number 1 found multiple times.
+91: [01:59:56] mapped atoms in the reactants were not mapped in the products.
 91:   unmapped numbers are: 4 
-91: [19:08:45] product atom-mapping number 6 not found in reactants.
-91: [19:08:45] product atom-mapping number 7 not found in reactants.
-91: [19:08:45] product atom-mapping number 8 not found in reactants.
-91: [19:08:45] product atom-mapping number 7 not found in reactants.
-91: [19:08:45] product atom-mapping number 8 not found in reactants.
-91: [19:08:45] product atom-mapping number 9 not found in reactants.
-91: [19:08:45] product atom-mapping number 10 not found in reactants.
-91: [19:08:45] mapped atoms in the reactants were not mapped in the products.
+91: [01:59:56] product atom-mapping number 6 not found in reactants.
+91: [01:59:56] product atom-mapping number 7 not found in reactants.
+91: [01:59:56] product atom-mapping number 8 not found in reactants.
+91: [01:59:56] product atom-mapping number 7 not found in reactants.
+91: [01:59:56] product atom-mapping number 8 not found in reactants.
+91: [01:59:56] product atom-mapping number 9 not found in reactants.
+91: [01:59:56] product atom-mapping number 10 not found in reactants.
+91: [01:59:56] mapped atoms in the reactants were not mapped in the products.
 91:   unmapped numbers are: 6 
-91: [19:08:45] product atom-mapping number 7 not found in reactants.
-91: [19:08:45] product atom-mapping number 8 not found in reactants.
-91: [19:08:45] product atom-mapping number 9 not found in reactants.
-91: [19:08:45] product atom-mapping number 10 not found in reactants.
-91: [19:08:45] mapped atoms in the reactants were not mapped in the products.
+91: [01:59:56] product atom-mapping number 7 not found in reactants.
+91: [01:59:56] product atom-mapping number 8 not found in reactants.
+91: [01:59:56] product atom-mapping number 9 not found in reactants.
+91: [01:59:56] product atom-mapping number 10 not found in reactants.
+91: [01:59:56] mapped atoms in the reactants were not mapped in the products.
 91:   unmapped numbers are: 6 
 91: smi1 [C:1][C:2][C:3]([O:4])([N:5])[Cl:6]>>[C:1][C:3]([C:2])([O:4])[N:5].[ClH:6]
 91: smi2 [C:1][C:2][C:3]([O:4])([N:5])[Cl:6]>>[C:1][C:3]([C:2])([O:4])[N:5].[ClH:6]
-91: [19:08:45] mapped atoms in the reactants were not mapped in the products.
+91: [01:59:56] mapped atoms in the reactants were not mapped in the products.
 91:   unmapped numbers are: 7 8 9 10 11 12 13 14 15 16 
-91: [19:08:45] product atom-mapping number 17 not found in reactants.
-91: [19:08:45] product atom-mapping number 18 not found in reactants.
-91: [19:08:45] mapped atoms in the reactants were not mapped in the products.
+91: [01:59:57] product atom-mapping number 17 not found in reactants.
+91: [01:59:57] product atom-mapping number 18 not found in reactants.
+91: [01:59:57] mapped atoms in the reactants were not mapped in the products.
 91:   unmapped numbers are: 12 
-91: [19:08:46] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs)
-91: [19:08:46] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs)
+93: 30000000 30000000
+91: [01:59:57] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs)
+91: [01:59:57] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs)
 91: 
-91: [19:08:46] Mismatched potential rlabels: 1 unmapped reactant dummy atom rlabels,0 unmappped product dummy atom rlabels
+91: [01:59:57] Mismatched potential rlabels: 1 unmapped reactant dummy atom rlabels,0 unmappped product dummy atom rlabels
 91: -------------
 91: CCOc1ccccc1
-91: [19:08:48] reactant 0 has no mapped atoms.
-91: [19:08:48] product 0 has no mapped atoms.
-91: [19:08:48] WARNING: neither stereo atoms nor CIP codes found for double bond. Stereochemistry info will not be propagated to product.
- 87/230 Test  #91: testReaction ...........................   Passed    3.95 sec
-test 92
-        Start  92: testReactionFingerprints
-
-92: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/testReactionFingerprints
-92: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions
-92: Test timeout computed to be: 1500
-92: [19:08:48] -------------------------------------
-92: [19:08:48]     Test Reaction StructuralFingerprint
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-92: [19:08:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-92: [19:08:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-92: [19:08:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-92: [19:08:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-92: [19:08:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-92: [19:08:48] -------------------------------------
-92: [19:08:48]     Test Reaction DifferenceFingerprint
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use AtomPairGenerator
-92: [19:08:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-92: [19:08:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-92: [19:08:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-92: [19:08:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator
- 88/230 Test  #92: testReactionFingerprints ...............   Passed    0.22 sec
-test 93
-        Start  93: testEnumeration
-
-93: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/testEnumeration
-93: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions
-93: Test timeout computed to be: 1500
-90: Randomness seeded to: 524566120
-90: ===============================================================================
-90: All tests passed (11480 assertions in 38 test cases)
-90: 
- 89/230 Test  #90: testGenericGroups ......................   Passed    5.91 sec
+91: [01:59:58] reactant 0 has no mapped atoms.
+91: [01:59:58] product 0 has no mapped atoms.
+91: [01:59:58] WARNING: neither stereo atoms nor CIP codes found for double bond. Stereochemistry info will not be propagated to product.
+ 90/230 Test  #91: testReaction ...........................   Passed    2.06 sec
 test 94
         Start  94: rxnTestCatch
 
 94: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/rxnTestCatch
 94: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions
 94: Test timeout computed to be: 1500
-94: Randomness seeded to: 1993069430
-94: [19:08:49] atom 0 in product 0 has multiple charge specifications.
-94: [19:08:49] Found a SCD/SED line with missing/empty SDT specification at line 34
-94: [19:08:49] Found a SCD/SED line with missing/empty SDT specification at line 36
-94: [19:08:49] Found a SCD/SED line with missing/empty SDT specification at line 38
-94: [19:08:49] Found a SCD/SED line with missing/empty SDT specification at line 40
-94: [19:08:49] Found a SCD/SED line with missing/empty SDT specification at line 42
-94: [19:08:49] Found a SCD/SED line with missing/empty SDT specification at line 87
-94: [19:08:49] Found a SCD/SED line with missing/empty SDT specification at line 89
-94: [19:08:49] Found a SCD/SED line with missing/empty SDT specification at line 91
-94: [19:08:49] Found a SCD/SED line with missing/empty SDT specification at line 93
-94: [19:08:49] Found a SCD/SED line with missing/empty SDT specification at line 95
-94: [19:08:49] mapped atoms in the reactants were not mapped in the products.
+94: Randomness seeded to: 484456105
+94: [01:59:58] atom 0 in product 0 has multiple charge specifications.
+94: [01:59:58] Found a SCD/SED line with missing/empty SDT specification at line 34
+94: [01:59:58] Found a SCD/SED line with missing/empty SDT specification at line 36
+94: [01:59:58] Found a SCD/SED line with missing/empty SDT specification at line 38
+94: [01:59:58] Found a SCD/SED line with missing/empty SDT specification at line 40
+94: [01:59:58] Found a SCD/SED line with missing/empty SDT specification at line 42
+94: [01:59:58] Found a SCD/SED line with missing/empty SDT specification at line 87
+94: [01:59:58] Found a SCD/SED line with missing/empty SDT specification at line 89
+94: [01:59:58] Found a SCD/SED line with missing/empty SDT specification at line 91
+94: [01:59:58] Found a SCD/SED line with missing/empty SDT specification at line 93
+94: [01:59:58] Found a SCD/SED line with missing/empty SDT specification at line 95
+94: [01:59:58] mapped atoms in the reactants were not mapped in the products.
 94:   unmapped numbers are: 2 
-93: 30000000 30000000
-94: [19:08:49] mapped atoms in the reactants were not mapped in the products.
+94: [01:59:58] mapped atoms in the reactants were not mapped in the products.
 94:   unmapped numbers are: 2 
-94: [19:08:49] SMARTS Parse Error: unclosed ring for input: 'CC1'
-94: [19:08:49] SMILES Parse Error: unclosed ring for input: 'CC1'
-94: [19:08:49] mapped atoms in the reactants were not mapped in the products.
+94: [01:59:58] SMARTS Parse Error: unclosed ring for input: 'CC1'
+94: [01:59:58] SMILES Parse Error: unclosed ring for input: 'CC1'
+94: [01:59:58] mapped atoms in the reactants were not mapped in the products.
 94:   unmapped numbers are: 2 
-94: [19:08:49] product atom-mapping number 2 not found in reactants.
-94: [19:08:49] mapped atoms in the reactants were not mapped in the products.
+94: [01:59:58] product atom-mapping number 2 not found in reactants.
+94: [01:59:58] mapped atoms in the reactants were not mapped in the products.
 94:   unmapped numbers are: 2 
-94: [19:08:49] product atom-mapping number 2 not found in reactants.
-94: [19:08:49] CX Extensions: Substance group hierarchy is not always preserved.
-94: [19:08:49] CX Extensions: Substance group hierarchy is not always preserved.
-94: [19:08:49] reactant 0 has no mapped atoms.
-94: [19:08:49] product 0 has no mapped atoms.
-94: [19:08:49] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-94: [19:08:49] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
-94: [19:08:49] Explicit valence for atom # 1 O, 5, is greater than permitted
+94: [01:59:58] product atom-mapping number 2 not found in reactants.
+94: [01:59:58] CX Extensions: Substance group hierarchy is not always preserved.
+94: [01:59:58] CX Extensions: Substance group hierarchy is not always preserved.
+94: [01:59:58] reactant 0 has no mapped atoms.
+94: [01:59:58] product 0 has no mapped atoms.
+94: [01:59:58] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+94: [01:59:58] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
+94: [01:59:58] Explicit valence for atom # 1 O, 5, is greater than permitted
 94: ===============================================================================
 94: All tests passed (702 assertions in 28 test cases)
 94: 
- 90/230 Test  #94: rxnTestCatch ...........................   Passed    0.87 sec
+ 91/230 Test  #94: rxnTestCatch ...........................   Passed    0.67 sec
 test 95
         Start  95: pyChemReactions
 
 95: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py"
 95: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap
 95: Test timeout computed to be: 1500
- 91/230 Test  #95: pyChemReactions ........................***Exception: SegFault  2.16 sec
+ 92/230 Test  #95: pyChemReactions ........................***Exception: SegFault  0.81 sec
 
 test 96
         Start  96: pyChemReactionEnumerations
@@ -30407,7 +30447,7 @@
 96: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Wrap/testEnumerations.py"
 96: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap
 96: Test timeout computed to be: 1500
- 92/230 Test  #96: pyChemReactionEnumerations .............***Exception: SegFault  1.31 sec
+ 93/230 Test  #96: pyChemReactionEnumerations .............***Exception: SegFault  0.79 sec
 
 test 97
         Start  97: pyChemReactionSanitize
@@ -30415,7 +30455,7 @@
 97: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ChemReactions/Wrap/testSanitize.py"
 97: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap
 97: Test timeout computed to be: 1500
- 93/230 Test  #97: pyChemReactionSanitize .................***Exception: SegFault  1.52 sec
+ 94/230 Test  #97: pyChemReactionSanitize .................***Exception: SegFault  1.07 sec
 
 test 98
         Start  98: testChemTransforms
@@ -30431,18 +30471,18 @@
 98: replaceSub smi1:CCNCC
 98: sidechains chiral=true smi1;;; [1*]P([2*])[C@H](N)O
 98: sidechains chiral=false smi1;;; [1*]P([2*])[C@H](N)O
-98: [19:08:54] SMARTS Parse Error: syntax error while parsing: bar
-98: [19:08:54] SMARTS Parse Error: Failed parsing SMARTS 'bar' for input: 'bar'
- 94/230 Test  #98: testChemTransforms .....................   Passed    0.64 sec
+98: [02:00:01] SMARTS Parse Error: syntax error while parsing: bar
+98: [02:00:01] SMARTS Parse Error: Failed parsing SMARTS 'bar' for input: 'bar'
+ 95/230 Test  #98: testChemTransforms .....................   Passed    0.28 sec
 test 99
         Start  99: chemTransformsTestCatch
 
 99: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
 99: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms
 99: Test timeout computed to be: 1500
-99: Randomness seeded to: 2320991807
-99: [19:08:55] Incomplete atom labelling, cannot make bond
-99: [19:08:55] 
+99: Randomness seeded to: 4009917320
+99: [02:00:01] Incomplete atom labelling, cannot make bond
+99: [02:00:01] 
 99: 
 99: ****
 99: Invariant Violation
@@ -30455,20 +30495,20 @@
 99:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 99:  2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional<std::map<int, int, std::less<int>, std::allocator<std::pair<int const, int> > > >&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
 99:  3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
-99:  4# 0x00700466 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  5# 0x007373D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  6# 0x00737A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  7# 0x00737D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  8# 0x007190B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  9# 0x0071948C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 10# 0x006F8BA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 11# 0xF72104FA in /lib/arm-linux-gnueabihf/libc.so.6
+99:  4# 0x004D2466 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  5# 0x005093D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  6# 0x00509A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  7# 0x00509D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  8# 0x004EB0B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  9# 0x004EB48C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 10# 0x004CABA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 11# 0xB688A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 99: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 99: ----------
 99: ****
 99: 
-99: [19:08:56] Incomplete atom labelling, cannot make bond
-99: [19:08:56] 
+99: [02:00:02] Incomplete atom labelling, cannot make bond
+99: [02:00:02] 
 99: 
 99: ****
 99: Invariant Violation
@@ -30481,20 +30521,20 @@
 99:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 99:  2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional<std::map<int, int, std::less<int>, std::allocator<std::pair<int const, int> > > >&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
 99:  3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
-99:  4# 0x00700466 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  5# 0x007373D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  6# 0x00737A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  7# 0x00737D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  8# 0x007190B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  9# 0x0071948C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 10# 0x006F8BA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 11# 0xF72104FA in /lib/arm-linux-gnueabihf/libc.so.6
+99:  4# 0x004D2466 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  5# 0x005093D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  6# 0x00509A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  7# 0x00509D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  8# 0x004EB0B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  9# 0x004EB48C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 10# 0x004CABA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 11# 0xB688A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 99: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 99: ----------
 99: ****
 99: 
-99: [19:08:56] Incomplete atom labelling, cannot make bond
-99: [19:08:56] 
+99: [02:00:02] Incomplete atom labelling, cannot make bond
+99: [02:00:02] 
 99: 
 99: ****
 99: Invariant Violation
@@ -30507,22 +30547,22 @@
 99:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 99:  2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional<std::map<int, int, std::less<int>, std::allocator<std::pair<int const, int> > > >&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
 99:  3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
-99:  4# 0x00700466 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  5# 0x007373D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  6# 0x00737A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  7# 0x00737D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  8# 0x007190B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  9# 0x0071948C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 10# 0x006F8BA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 11# 0xF72104FA in /lib/arm-linux-gnueabihf/libc.so.6
+99:  4# 0x004D2466 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  5# 0x005093D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  6# 0x00509A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  7# 0x00509D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  8# 0x004EB0B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  9# 0x004EB48C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 10# 0x004CABA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 11# 0xB688A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 99: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 99: ----------
 99: ****
 99: 
-99: [19:08:56] Incomplete atom labelling, cannot make bond
-99: [19:08:56] Incomplete atom labelling, cannot make bond
-99: [19:08:56] Incomplete atom labelling, cannot make bond
-99: [19:08:56] 
+99: [02:00:02] Incomplete atom labelling, cannot make bond
+99: [02:00:02] Incomplete atom labelling, cannot make bond
+99: [02:00:02] Incomplete atom labelling, cannot make bond
+99: [02:00:02] 
 99: 
 99: ****
 99: Invariant Violation
@@ -30535,20 +30575,20 @@
 99:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 99:  2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional<std::map<int, int, std::less<int>, std::allocator<std::pair<int const, int> > > >&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
 99:  3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
-99:  4# 0x00700466 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  5# 0x007373D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  6# 0x00737A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  7# 0x00737D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  8# 0x007190B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  9# 0x0071948C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 10# 0x006F8BA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 11# 0xF72104FA in /lib/arm-linux-gnueabihf/libc.so.6
+99:  4# 0x004D2466 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  5# 0x005093D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  6# 0x00509A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  7# 0x00509D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  8# 0x004EB0B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  9# 0x004EB48C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 10# 0x004CABA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 11# 0xB688A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 99: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 99: ----------
 99: ****
 99: 
-99: [19:08:56] Incomplete atom labelling, cannot make bond
-99: [19:08:56] 
+99: [02:00:02] Incomplete atom labelling, cannot make bond
+99: [02:00:02] 
 99: 
 99: ****
 99: Invariant Violation
@@ -30561,19 +30601,19 @@
 99:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 99:  2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional<std::map<int, int, std::less<int>, std::allocator<std::pair<int const, int> > > >&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
 99:  3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
-99:  4# 0x00700466 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  5# 0x007373D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  6# 0x00737A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  7# 0x00737D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  8# 0x007190B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  9# 0x0071948C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 10# 0x006F8BA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 11# 0xF72104FA in /lib/arm-linux-gnueabihf/libc.so.6
+99:  4# 0x004D2466 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  5# 0x005093D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  6# 0x00509A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  7# 0x00509D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  8# 0x004EB0B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  9# 0x004EB48C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 10# 0x004CABA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 11# 0xB688A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 99: 12# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 99: ----------
 99: ****
 99: 
-99: [19:08:56] 
+99: [02:00:02] 
 99: 
 99: ****
 99: Invariant Violation
@@ -30587,14 +30627,14 @@
 99:  2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional<std::map<int, int, std::less<int>, std::allocator<std::pair<int const, int> > > >&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
 99:  3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
 99:  4# RDKit::molzip(RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitChemTransforms.so.1
-99:  5# 0x006F9458 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  6# 0x007373D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  7# 0x00737A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  8# 0x00737D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99:  9# 0x007190B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 10# 0x0071948C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 11# 0x006F8BA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
-99: 12# 0xF72104FA in /lib/arm-linux-gnueabihf/libc.so.6
+99:  5# 0x004CB458 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  6# 0x005093D4 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  7# 0x00509A40 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  8# 0x00509D70 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99:  9# 0x004EB0B8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 10# 0x004EB48C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 11# 0x004CABA6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/chemTransformsTestCatch
+99: 12# 0xB688A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 99: 13# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 99: ----------
 99: ****
@@ -30602,25 +30642,25 @@
 99: ===============================================================================
 99: All tests passed (674 assertions in 9 test cases)
 99: 
- 95/230 Test  #99: chemTransformsTestCatch ................   Passed    1.60 sec
+ 96/230 Test  #99: chemTransformsTestCatch ................   Passed    0.46 sec
 test 100
         Start 100: tautomerQueryTestCatch
 
 100: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery/tautomerQueryTestCatch
 100: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery
 100: Test timeout computed to be: 1500
-100: Randomness seeded to: 3908927330
+100: Randomness seeded to: 1855085486
 100: ===============================================================================
 100: All tests passed (93 assertions in 13 test cases)
 100: 
- 96/230 Test #100: tautomerQueryTestCatch .................   Passed    1.61 sec
+ 97/230 Test #100: tautomerQueryTestCatch .................   Passed    0.79 sec
 test 101
         Start 101: pyTautomerQuery
 
 101: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/TautomerQuery/Wrap/rough_test.py"
 101: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/TautomerQuery/Wrap
 101: Test timeout computed to be: 1500
- 97/230 Test #101: pyTautomerQuery ........................***Exception: SegFault  1.21 sec
+ 98/230 Test #101: pyTautomerQuery ........................***Exception: SegFault  0.79 sec
 
 test 102
         Start 102: testSubgraphs1
@@ -30655,7 +30695,7 @@
 102: -----------------------
 102:  testRootedPaths
 102: Finished
- 98/230 Test #102: testSubgraphs1 .........................   Passed    1.40 sec
+ 99/230 Test #102: testSubgraphs1 .........................   Passed    1.06 sec
 test 103
         Start 103: testSubgraphs2
 
@@ -30677,19 +30717,19 @@
 103: -----------------------
 103:  Testing github Issue103: more stereochemistry and pathToSubmol (path needs to be in sorted order)
 103: Finished
- 99/230 Test #103: testSubgraphs2 .........................   Passed    0.11 sec
+100/230 Test #103: testSubgraphs2 .........................   Passed    0.11 sec
 test 104
         Start 104: subgraphsCatch
 
 104: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs/subgraphsCatch
 104: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs
 104: Test timeout computed to be: 1500
-104: Randomness seeded to: 1296501649
+104: Randomness seeded to: 3192058215
 104: ---------
 104: ===============================================================================
 104: All tests passed (11 assertions in 1 test case)
 104: 
-100/230 Test #104: subgraphsCatch .........................   Passed    0.10 sec
+101/230 Test #104: subgraphsCatch .........................   Passed    0.11 sec
 test 105
         Start 105: filterCatalogTest
 
@@ -30784,14 +30824,14 @@
 105: 	10,15},
 105: 	11,16},
 105: }
-101/230 Test #105: filterCatalogTest ......................   Passed    1.66 sec
+102/230 Test #105: filterCatalogTest ......................   Passed    0.68 sec
 test 106
         Start 106: pyFilterCatalog
 
 106: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/FilterCatalog/Wrap/rough_test.py"
 106: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap
 106: Test timeout computed to be: 1500
-102/230 Test #106: pyFilterCatalog ........................***Exception: SegFault  1.19 sec
+103/230 Test #106: pyFilterCatalog ........................***Exception: SegFault  1.56 sec
 
 test 107
         Start 107: testFragCatalog
@@ -30800,7 +30840,7 @@
 107: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog
 107: Test timeout computed to be: 1500
 107:  21
-107: [19:09:07] 
+107: [02:00:09] 
 107: 
 107: ****
 107: Invariant Violation
@@ -30811,16 +30851,16 @@
 107: Stacktrace:
 107:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 107:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-107:  2# 0xF7C51018 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFragCatalog.so.1
+107:  2# 0xB6F9E018 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFragCatalog.so.1
 107:  3# RDKit::readFuncGroups(std::istream&, int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFragCatalog.so.1
-107:  4# 0x008D251A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
-107:  5# 0x008CF452 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
-107:  6# 0xF76154FA in /lib/arm-linux-gnueabihf/libc.so.6
+107:  4# 0x004A151A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
+107:  5# 0x0049E452 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
+107:  6# 0xB69624FA in /lib/arm-linux-gnueabihf/libc.so.6
 107:  7# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 107: ----------
 107: ****
 107: 
-107: [19:09:07] 
+107: [02:00:09] 
 107: 
 107: ****
 107: Invariant Violation
@@ -30831,16 +30871,16 @@
 107: Stacktrace:
 107:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 107:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-107:  2# 0xF7C51018 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFragCatalog.so.1
+107:  2# 0xB6F9E018 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFragCatalog.so.1
 107:  3# RDKit::readFuncGroups(std::istream&, int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFragCatalog.so.1
-107:  4# 0x008D251A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
-107:  5# 0x008CF452 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
-107:  6# 0xF76154FA in /lib/arm-linux-gnueabihf/libc.so.6
+107:  4# 0x004A151A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
+107:  5# 0x0049E452 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
+107:  6# 0xB69624FA in /lib/arm-linux-gnueabihf/libc.so.6
 107:  7# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 107: ----------
 107: ****
 107: 
-107: [19:09:07] 
+107: [02:00:09] 
 107: 
 107: ****
 107: Invariant Violation
@@ -30851,23 +30891,23 @@
 107: Stacktrace:
 107:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 107:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-107:  2# 0xF7C51018 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFragCatalog.so.1
+107:  2# 0xB6F9E018 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFragCatalog.so.1
 107:  3# RDKit::readFuncGroups(std::istream&, int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitFragCatalog.so.1
-107:  4# 0x008D251A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
-107:  5# 0x008CF452 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
-107:  6# 0xF76154FA in /lib/arm-linux-gnueabihf/libc.so.6
+107:  4# 0x004A151A in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
+107:  5# 0x0049E452 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/testFragCatalog
+107:  6# 0xB69624FA in /lib/arm-linux-gnueabihf/libc.so.6
 107:  7# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 107: ----------
 107: ****
 107: 
-103/230 Test #107: testFragCatalog ........................   Passed    3.79 sec
+104/230 Test #107: testFragCatalog ........................   Passed    2.51 sec
 test 108
         Start 108: pyFragCatalog
 
 108: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/FragCatalog/Wrap/rough_test.py"
 108: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap
 108: Test timeout computed to be: 1500
-104/230 Test #108: pyFragCatalog ..........................***Exception: SegFault  1.15 sec
+105/230 Test #108: pyFragCatalog ..........................***Exception: SegFault  0.67 sec
 
 test 109
         Start 109: testDescriptors
@@ -30875,88 +30915,158 @@
 109: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/testDescriptors
 109: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 109: Test timeout computed to be: 1500
-109: [19:09:09] -------------------------------------
-109: [19:09:09]     Test Crippen parameter acquisition.
-109: [19:09:09]   done
-109: [19:09:09] -------------------------------------
-109: [19:09:09]     Test Crippen calculation.
-109: [19:09:09]   done
-109: [19:09:09] -------------------------------------
-109: [19:09:09]     Test Issue262: problems with Crippen calculation from pickles.
-109: [19:09:09]   done
-109: [19:09:09] -------------------------------------
-109: [19:09:09]     Test AMW calculation.
-109: [19:09:09]   done
-109: [19:09:09] -------------------------------------
-109: [19:09:09]     Test Exact MW calculation.
-109: [19:09:09]   done
-109: [19:09:09] -------------------------------------
-109: [19:09:09]     Test Labute ASA descriptors.
-109: [19:09:09]   done
-109: [19:09:09] -------------------------------------
-109: [19:09:09]     Test TPSA descriptors.
-109: [19:09:09]   done
-109: [19:09:09] -------------------------------------
-109: [19:09:09]     Test Lipinski parameters.
-109: [19:09:11]   done
-109: [19:09:11] -------------------------------------
-109: [19:09:11]     Test VSA descriptors.
-109: [19:09:11]   done
-109: [19:09:11] -------------------------------------
-109: [19:09:11]     Test molecular formula calculation.
-109: [19:09:11]   done
-109: [19:09:11] -------------------------------------
-109: [19:09:11]     Test Issue 3415534.
-109: [19:09:11]   done
-109: [19:09:11] -------------------------------------
-109: [19:09:11]     Test Issue3433771: Bad definition for Crippen atom type O11.
-109: [19:09:11]   done
-109: [19:09:11] -------------------------------------
-109: [19:09:11]     Test multithreading
+109: [02:00:10] -------------------------------------
+109: [02:00:10]     Test Crippen parameter acquisition.
+109: [02:00:10]   done
+109: [02:00:10] -------------------------------------
+109: [02:00:10]     Test Crippen calculation.
+109: [02:00:10]   done
+109: [02:00:10] -------------------------------------
+109: [02:00:10]     Test Issue262: problems with Crippen calculation from pickles.
+109: [02:00:10]   done
+109: [02:00:10] -------------------------------------
+109: [02:00:10]     Test AMW calculation.
+109: [02:00:10]   done
+109: [02:00:10] -------------------------------------
+109: [02:00:10]     Test Exact MW calculation.
+109: [02:00:10]   done
+109: [02:00:10] -------------------------------------
+109: [02:00:10]     Test Labute ASA descriptors.
+109: [02:00:10]   done
+109: [02:00:10] -------------------------------------
+109: [02:00:10]     Test TPSA descriptors.
+109: [02:00:11]   done
+109: [02:00:11] -------------------------------------
+109: [02:00:11]     Test Lipinski parameters.
+109: [02:00:11]   done
+109: [02:00:11] -------------------------------------
+109: [02:00:11]     Test VSA descriptors.
+109: [02:00:11]   done
+109: [02:00:11] -------------------------------------
+109: [02:00:11]     Test molecular formula calculation.
+109: [02:00:11]   done
+109: [02:00:11] -------------------------------------
+109: [02:00:11]     Test Issue 3415534.
+109: [02:00:11]   done
+109: [02:00:11] -------------------------------------
+109: [02:00:11]     Test Issue3433771: Bad definition for Crippen atom type O11.
+109: [02:00:11]   done
+109: [02:00:11] -------------------------------------
+109: [02:00:11]     Test multithreading
 109: reading molecules
 109: processing
 109:  launch :0
 109:  launch :1
 109:  launch :2
 109:  launch :3
-79: ===============================================================================
-79: All tests passed (1586 assertions in 98 test cases)
-79: 
-105/230 Test  #79: fileParsersCatchTest ...................   Passed   79.09 sec
+31: [02:00:24] Finished
+31: [02:00:24] -------------------------------------
+31: [02:00:24]     Test github1843: RWMol.clear() should not destroy ring pointer.
+31: [02:00:24] Finished
+31: [02:00:24] -------------------------------------
+31: [02:00:24]     Test Github 6370: non-physical radical counts being preserved
+31: [02:00:24] Finished
+106/230 Test  #31: graphmolTest1 ..........................   Passed  141.03 sec
 test 110
         Start 110: testAUTOCORR2D
 
 110: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/testAUTOCORR2D
 110: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 110: Test timeout computed to be: 1500
-110: [19:09:15] ----------------------------
+110: [02:00:24] ----------------------------
 110: start test autocorr2D
-110: [19:09:20]   done
-110: [19:09:20] -------------------------------------
-110: [19:09:20]     Test Github #3806: NaNs from AUTOCORR2D descriptor
-110: [19:09:20]   done
-106/230 Test #110: testAUTOCORR2D .........................   Passed    5.20 sec
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test Issue252: Bad definitions for Crippen atom types.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test calculation of ChiVs.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test calculation of ChiNs.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test calculation of HallKierAlpha.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test calculation of Kappa1.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test calculation of Kappa2.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test calculation of Kappa3.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test Crippen atom type calculations.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test ring descriptors
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test other count descriptors.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test MQN
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test GitHub Issue 56.
+109: [02:00:25] WARNING: not removing hydrogen atom without neighbors
+109: [02:00:25] WARNING: not removing hydrogen atom without neighbors
+109: [02:00:25] WARNING: not removing hydrogen atom without neighbors
+109: [02:00:25] WARNING: not removing hydrogen atom without neighbors
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test Github92: Bad Crippen atom type for pyrrole H.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test Github362: order dependence  in Kier-Hall descriptors.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test calculation of spiro and bridgehead counts.
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test Github694: ExactMolWt ignoring the mass of the electron
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Testing Properties and KitchenSink
+109: [02:00:25] ---Caught keyerror (bad property name)---
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test USR Descriptor
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test Github #1702: AUTOCORR2D.h not installed unless RDK_BUILD_DESCRIPTORS3D but is required
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test Github #1973: support P and S terms for TPSA calculation
+109: [02:00:25]   done
+109: [02:00:25] -------------------------------------
+109: [02:00:25]     Test Github #2948: Empty molecule has non-zero LabuteASA
+109: [02:00:25]   done
+107/230 Test #109: testDescriptors ........................   Passed   14.83 sec
 test 111
         Start 111: testATF
 
 111: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/testATF
 111: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 111: Test timeout computed to be: 1500
-107/230 Test #111: testATF ................................   Passed    0.36 sec
+108/230 Test #111: testATF ................................   Passed    0.13 sec
 test 112
         Start 112: testBCUT
 
 112: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/testBCUT
 112: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 112: Test timeout computed to be: 1500
-112: [19:09:20] -------------------------------------
-112: [19:09:20]     Basic BCUT tests.
-112: [19:09:21]   done
-112: [19:09:21] -------------------------------------
-112: [19:09:21]     Larger BCUT tests.
-112: [19:09:28] -------------------------------------
-112: [19:09:28]     Test empty molecule BCUT.
-108/230 Test #112: testBCUT ...............................   Passed    7.55 sec
+112: [02:00:25] -------------------------------------
+112: [02:00:25]     Basic BCUT tests.
+112: [02:00:25]   done
+112: [02:00:25] -------------------------------------
+112: [02:00:25]     Larger BCUT tests.
+110: [02:00:26]   done
+110: [02:00:26] -------------------------------------
+110: [02:00:26]     Test Github #3806: NaNs from AUTOCORR2D descriptor
+110: [02:00:26]   done
+109/230 Test #110: testAUTOCORR2D .........................   Passed    2.06 sec
 test 113
         Start 113: testEEM
 
@@ -30964,603 +31074,537 @@
 113: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 113: Test timeout computed to be: 1500
 113: =>start test EEM
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
 113: 0
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
 113: 100
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:30] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:31] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: 200
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:32] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: 300
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: 400
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:36] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: [19:09:37] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
-113: Elapsed time: 8.80307 s
-113: Errors:0
-113: [19:09:37] test on : 500 molecules done
-109/230 Test #113: testEEM ................................   Passed    9.00 sec
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+112: [02:00:26] -------------------------------------
+112: [02:00:26]     Test empty molecule BCUT.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+110/230 Test #112: testBCUT ...............................   Passed    1.42 sec
 test 114
         Start 114: testPBF
 
 114: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/testPBF
 114: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 114: Test timeout computed to be: 1500
-114: [19:09:37] -------------------------------------
-114: [19:09:37]     Basic PBF tests.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test Issue252: Bad definitions for Crippen atom types.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test calculation of ChiVs.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test calculation of ChiNs.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test calculation of HallKierAlpha.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test calculation of Kappa1.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test calculation of Kappa2.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test calculation of Kappa3.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test Crippen atom type calculations.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test ring descriptors
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test other count descriptors.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test MQN
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test GitHub Issue 56.
-109: [19:09:40] WARNING: not removing hydrogen atom without neighbors
-109: [19:09:40] WARNING: not removing hydrogen atom without neighbors
-109: [19:09:40] WARNING: not removing hydrogen atom without neighbors
-109: [19:09:40] WARNING: not removing hydrogen atom without neighbors
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test Github92: Bad Crippen atom type for pyrrole H.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test Github362: order dependence  in Kier-Hall descriptors.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test calculation of spiro and bridgehead counts.
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test Github694: ExactMolWt ignoring the mass of the electron
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Testing Properties and KitchenSink
-109: [19:09:40] ---Caught keyerror (bad property name)---
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test USR Descriptor
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test Github #1702: AUTOCORR2D.h not installed unless RDK_BUILD_DESCRIPTORS3D but is required
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test Github #1973: support P and S terms for TPSA calculation
-109: [19:09:40]   done
-109: [19:09:40] -------------------------------------
-109: [19:09:40]     Test Github #2948: Empty molecule has non-zero LabuteASA
-109: [19:09:40]   done
-110/230 Test #109: testDescriptors ........................   Passed   31.55 sec
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:26] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+114: [02:00:27] -------------------------------------
+114: [02:00:27]     Basic PBF tests.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: 200
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+114: [02:00:27]   done
+114: [02:00:27] -------------------------------------
+114: [02:00:27]     PBF edge cases.
+114: [02:00:27]   done
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+111/230 Test #114: testPBF ................................   Passed    0.78 sec
 test 115
         Start 115: testRDFcustom
 
 115: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/testRDFcustom
 115: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 115: Test timeout computed to be: 1500
-114: [19:09:40]   done
-114: [19:09:40] -------------------------------------
-114: [19:09:40]     PBF edge cases.
-114: [19:09:40]   done
-111/230 Test #114: testPBF ................................   Passed    3.43 sec
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: 300
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:27] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: 400
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:28] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: [02:00:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+113: Elapsed time: 2.8149 s
+113: Errors:0
+113: [02:00:29] test on : 500 molecules done
+112/230 Test #113: testEEM ................................   Passed    2.94 sec
 test 116
         Start 116: testRDF
 
@@ -31568,10 +31612,10 @@
 116: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 116: Test timeout computed to be: 1500
 115: =>start test rdf custom
-115: [19:09:46] test on : 365 molecules done
+115: [02:00:29] test on : 365 molecules done
 116: =>start test rdf
-116: [19:09:48] test on : 365 molecules done
-112/230 Test #116: testRDF ................................   Passed    7.51 sec
+116: [02:00:30] test on : 365 molecules done
+113/230 Test #116: testRDF ................................   Passed    1.53 sec
 test 117
         Start 117: testMORSE
 
@@ -31579,46 +31623,46 @@
 117: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 117: Test timeout computed to be: 1500
 115: =>start test morse custom
-115: [19:09:57] test on : 365 molecules done
+115: [02:00:31] test on : 365 molecules done
+115: =>start test AUTOCORR3D custom
+115: [02:00:33] test on : 365 molecules done
 117: =>start test MORSE
 117: =>read file
-117: [19:10:00] test on : 365 molecules done
-113/230 Test #117: testMORSE ..............................   Passed   12.13 sec
+117: [02:00:33] test on : 365 molecules done
+114/230 Test #117: testMORSE ..............................   Passed    2.88 sec
 test 118
         Start 118: test3D
 
 118: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/test3D
 118: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 118: Test timeout computed to be: 1500
-118: [19:10:00] -------------------------------------
-118: [19:10:00]     Basic PMI tests.
-115: =>start test AUTOCORR3D custom
-115: [19:10:00] test on : 365 molecules done
-118: [19:10:03]   done
-118: [19:10:03] -------------------------------------
-118: [19:10:03]     More PMI/NPR tests.
-118: [19:10:03]   done
-118: [19:10:03] -------------------------------------
-118: [19:10:03]     Basic NPR tests.
+118: [02:00:33] -------------------------------------
+118: [02:00:33]     Basic PMI tests.
+118: [02:00:34]   done
+118: [02:00:34] -------------------------------------
+118: [02:00:34]     More PMI/NPR tests.
+118: [02:00:34]   done
+118: [02:00:34] -------------------------------------
+118: [02:00:34]     Basic NPR tests.
 115: =>start test 2 WHIM custom
-115: [19:10:03] test on : 365 molecules done
-118: [19:10:05]   done
-118: [19:10:05] -------------------------------------
-118: [19:10:05]     PMI edge cases.
-118: [19:10:05]   done
-118: [19:10:05] -------------------------------------
-118: [19:10:05]     NPR edge cases.
-118: [19:10:05]   done
-118: [19:10:05] -------------------------------------
-118: [19:10:05]     3D descriptors.
-118: [19:10:05]   done
-118: [19:10:05] -------------------------------------
-118: [19:10:05]     3D descriptor edge cases.
-118: [19:10:05]   done
-118: [19:10:05] -------------------------------------
-118: [19:10:05]     Inertial shape factor.
-118: [19:10:05]   done
-114/230 Test #118: test3D .................................   Passed    5.49 sec
+115: [02:00:34] test on : 365 molecules done
+118: [02:00:34]   done
+118: [02:00:34] -------------------------------------
+118: [02:00:34]     PMI edge cases.
+118: [02:00:34]   done
+118: [02:00:34] -------------------------------------
+118: [02:00:34]     NPR edge cases.
+118: [02:00:34]   done
+118: [02:00:34] -------------------------------------
+118: [02:00:34]     3D descriptors.
+118: [02:00:34]   done
+118: [02:00:34] -------------------------------------
+118: [02:00:34]     3D descriptor edge cases.
+118: [02:00:34]   done
+118: [02:00:34] -------------------------------------
+118: [02:00:34]     Inertial shape factor.
+118: [02:00:34]   done
+115/230 Test #118: test3D .................................   Passed    1.28 sec
 test 119
         Start 119: testWHIM
 
@@ -31626,28 +31670,28 @@
 119: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 119: Test timeout computed to be: 1500
 115: =>start test 1 WHIM custom
-115: [19:10:07] test on : 365 molecules done
+115: [02:00:35] test on : 365 molecules done
 119: =>start test WHIM
-119: [19:10:09] test on : 365 molecules done
-115/230 Test #119: testWHIM ...............................   Passed    3.98 sec
+119: [02:00:35] test on : 365 molecules done
+116/230 Test #119: testWHIM ...............................   Passed    0.94 sec
 test 120
         Start 120: testGETAWAY
 
 120: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/testGETAWAY
 120: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 120: Test timeout computed to be: 1500
-115: =>start test GETAWAY custom
-115: [19:10:22] test on : 365 molecules done
-116/230 Test #115: testRDFcustom ..........................   Passed   41.71 sec
+120: =>start test GETAWAY
+120: [02:00:40] test on : 365 molecules done
+117/230 Test #120: testGETAWAY ............................   Passed    4.51 sec
 test 121
         Start 121: testAUTOCORR3D
 
 121: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/testAUTOCORR3D
 121: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 121: Test timeout computed to be: 1500
-121: =>start test autocorr3D
-121: [19:10:27] test on : 365 molecules done
-117/230 Test #121: testAUTOCORR3D .........................   Passed    4.86 sec
+115: =>start test GETAWAY custom
+115: [02:00:40] test on : 365 molecules done
+118/230 Test #115: testRDFcustom ..........................   Passed   12.66 sec
 test 122
         Start 122: testCoulombMat
 
@@ -31656,14 +31700,14 @@
 122: Test timeout computed to be: 1500
 122: ===================== Testing CoulombMat  =======================
 122: CM test 1 mat Done
-118/230 Test #122: testCoulombMat .........................   Passed    0.69 sec
+119/230 Test #122: testCoulombMat .........................   Passed    0.06 sec
 test 123
         Start 123: descriptorsTestCatch
 
 123: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/descriptorsTestCatch
 123: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors
 123: Test timeout computed to be: 1500
-123: Randomness seeded to: 3048003453
+123: Randomness seeded to: 881148943
 123: Warning: Atom Count for residue GLU5A does not match expected count
 123: Warning: Atom Count for residue ASN39A does not match expected count
 123: Warning: Atom Count for residue GLU53A does not match expected count
@@ -31671,20 +31715,21 @@
 123: Warning: Atom Count for residue LYS80A does not match expected count
 123: Warning: Atom Count for residue GLU150A does not match expected count
 123: Warning: Atom Count for residue ASN157A does not match expected count
-123: Warning: Atom Count for residue GLU5A does not match expected count
-120: =>start test GETAWAY
-120: [19:10:33] test on : 365 molecules done
-119/230 Test #120: testGETAWAY ............................   Passed   23.64 sec
+93: 0,0 0
+93: 0,1 0
+93: 1,0 0
+93: 1,1 0
+93: 2,0 0
+93: 2,1 0
+120/230 Test  #93: testEnumeration ........................   Passed   44.32 sec
 test 124
         Start 124: pyMolDescriptors
 
 124: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py"
 124: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/Wrap
 124: Test timeout computed to be: 1500
-123: Warning: Atom Count for residue ASN39A does not match expected count
-123: Warning: Atom Count for residue GLU53A does not match expected count
-123: Warning: Atom Count for residue ARG64A does not match expected count
-120/230 Test #124: pyMolDescriptors .......................***Exception: SegFault  3.03 sec
+123: Warning: Atom Count for residue GLU5A does not match expected count
+121/230 Test #124: pyMolDescriptors .......................***Exception: SegFault  0.83 sec
 
 test 125
         Start 125: pyMolDescriptors3D
@@ -31692,9 +31737,10 @@
 125: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Descriptors/Wrap/test3D.py"
 125: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/Wrap
 125: Test timeout computed to be: 1500
-123: Warning: Atom Count for residue LYS80A does not match expected count
-121/230 Test #125: pyMolDescriptors3D .....................***Exception: SegFault  1.92 sec
-
+123: Warning: Atom Count for residue ASN39A does not match expected count
+121: =>start test autocorr3D
+121: [02:00:42] test on : 365 molecules done
+122/230 Test #121: testAUTOCORR3D .........................   Passed    1.74 sec
 test 126
         Start 126: testFingerprints
 
@@ -32184,543 +32230,539 @@
 126: 
 126: -------------------
 126: 
-126: [19:10:39] -------------------------------------
-126: [19:10:39]     Test Morgan Fingerprints.
-126: [19:10:39]   done
-126: [19:10:39] -------------------------------------
-126: [19:10:39]     Test Morgan Fingerprints using fromAtoms argument.
-126: [19:10:39]   done
-126: [19:10:39] -------------------------------------
-126: [19:10:39]     Test Morgan Fingerprints as bit vects.
-126: [19:10:39]   done
-126: [19:10:39] -------------------------------------
-126: [19:10:39]     Test Morgan Fingerprints with feature invariants.
-126: [19:10:39]   done
-126: [19:10:39] -------------------------------------
-126: [19:10:39]     Test additional Morgan fingerprints options.
-126: [19:10:39]   done
-126: [19:10:39] -------------------------------------
-126: [19:10:39]     Test Atom Codes.
-126: [19:10:39]   done
-126: [19:10:39] -------------------------------------
-126: [19:10:39]     Test Atom Pairs.
-126: [19:10:39] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:39] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:39]   done
-126: [19:10:39] -------------------------------------
-126: [19:10:39]     Test Atom Pairs part 2.
-126: [19:10:39] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:39] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:39]   done
-126: [19:10:39] -------------------------------------
-126: [19:10:39]     Test Topological Torsions.
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39]   done
-126: [19:10:39] -------------------------------------
-126: [19:10:39]     Test Bulk Topological Torsions.
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:39] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test Hashed Atom Pairs.
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test Hashed torsions.
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test Rooted Atom Pairs.
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test ignoring atoms in Atom Pairs.
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test Rooted Topological Torsions.
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test ignoring atoms in Topological Torsions.
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test atom info from morgan fingerprints.
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test atom info from morgan fingerprints including Info Redundant Environments.
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40] -------------------------------------
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] -------------------------------------
-126: [19:10:40] -------------------------------------
-126: [19:10:40] -------------------------------------
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test Atom Pairs including info about chirality.
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test Topological Torsions including info about chirality.
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test GitHub Issue 25: fingerprint backwards compatibility.
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test GitHub Issue 151: PatternFingerprint problems
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test 3D atom pairs.
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test GitHub Issue 195: GenMACCSKeys() raises an exception with an empty molecule
-126: [19:10:40]   done
-126: [19:10:40] -------------------------------------
-126: [19:10:40]     Test multithreading with the pattern FP
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Morgan Fingerprints.
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Morgan Fingerprints using fromAtoms argument.
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Morgan Fingerprints as bit vects.
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Morgan Fingerprints with feature invariants.
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test additional Morgan fingerprints options.
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Atom Codes.
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Atom Pairs.
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Atom Pairs part 2.
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Topological Torsions.
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Bulk Topological Torsions.
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+123: Warning: Atom Count for residue GLU53A does not match expected count
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Hashed Atom Pairs.
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Hashed torsions.
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Rooted Atom Pairs.
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test ignoring atoms in Atom Pairs.
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Rooted Topological Torsions.
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test ignoring atoms in Topological Torsions.
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test atom info from morgan fingerprints.
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test atom info from morgan fingerprints including Info Redundant Environments.
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42] -------------------------------------
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] -------------------------------------
+126: [02:00:42] -------------------------------------
+126: [02:00:42] -------------------------------------
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Atom Pairs including info about chirality.
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test Topological Torsions including info about chirality.
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test GitHub Issue 25: fingerprint backwards compatibility.
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test GitHub Issue 151: PatternFingerprint problems
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test 3D atom pairs.
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test GitHub Issue 195: GenMACCSKeys() raises an exception with an empty molecule
+126: [02:00:42]   done
+126: [02:00:42] -------------------------------------
+126: [02:00:42]     Test multithreading with the pattern FP
 126: reading molecules
-126: pass 1
-126:  launch :0
-126:  launch :1
-126:  launch :2
-126:  launch :3
-126: pass 2
-126:  launch :0
-126:  launch :1
-126:  launch :2
-126:  launch :3
-123: Warning: Atom Count for residue GLU150A does not match expected count
-123: Warning: Atom Count for residue ASN157A does not match expected count
-93: 0,0 0
-93: 0,1 0
-93: 1,0 0
-93: 1,1 0
-93: 2,0 0
-93: 2,1 0
-122/230 Test  #93: testEnumeration ........................   Passed  133.38 sec
+123/230 Test #125: pyMolDescriptors3D .....................***Exception: SegFault  1.08 sec
+
 test 127
         Start 127: testMHFPFingerprint
 
 127: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/testMHFPFingerprint
 127: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints
 127: Test timeout computed to be: 1500
-127: [19:11:02] -------------------------------------
-127: [19:11:02] Test MHFP fingerprint encoder initialization
-127: [19:11:02]   done
-127: [19:11:02] -------------------------------------
-127: [19:11:02] Test MHFP shingling creation
-127: [19:11:02]   done
-127: [19:11:02] -------------------------------------
-127: [19:11:02] Test MHFP hashing of string and uint arrays
-127: [19:11:02]   done
-127: [19:11:02] -------------------------------------
-127: [19:11:02] Test SECFP fingerprint functionality
-127: [19:11:02]   done
-123/230 Test #127: testMHFPFingerprint ....................   Passed    0.85 sec
+123: Warning: Atom Count for residue ARG64A does not match expected count
+126: pass 1
+126:  launch :0
+126:  launch :1
+126:  launch :2
+126:  launch :3
+127: [02:00:42] -------------------------------------
+127: [02:00:42] Test MHFP fingerprint encoder initialization
+127: [02:00:42]   done
+127: [02:00:42] -------------------------------------
+127: [02:00:42] Test MHFP shingling creation
+127: [02:00:43]   done
+127: [02:00:43] -------------------------------------
+127: [02:00:43] Test MHFP hashing of string and uint arrays
+127: [02:00:43]   done
+127: [02:00:43] -------------------------------------
+127: [02:00:43] Test SECFP fingerprint functionality
+127: [02:00:43]   done
+124/230 Test #127: testMHFPFingerprint ....................   Passed    0.34 sec
 test 128
         Start 128: testFingerprintGenerators
 
 128: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/testFingerprintGenerators
 128: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints
 128: Test timeout computed to be: 1500
-128: [19:11:03] -------------------------------------
-128: [19:11:03] Test atom-pair fp generator
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03] Test atom-pair fp generator with different arguments
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03] Test compatibility between atom pair implementation for FingerprintGenerator and old atom pairs implementation
-128: [19:11:03] DEPRECATION WARNING: please use AtomPairGenerator
-128: [19:11:03] DEPRECATION WARNING: please use AtomPairGenerator
-128: [19:11:03] DEPRECATION WARNING: please use AtomPairGenerator
-128: [19:11:03] DEPRECATION WARNING: please use AtomPairGenerator
-128: [19:11:03] DEPRECATION WARNING: please use AtomPairGenerator
-128: [19:11:03] DEPRECATION WARNING: please use AtomPairGenerator
-128: [19:11:03] DEPRECATION WARNING: please use AtomPairGenerator
-128: [19:11:03] DEPRECATION WARNING: please use AtomPairGenerator
-128: [19:11:03] DEPRECATION WARNING: please use AtomPairGenerator
-128: [19:11:03] DEPRECATION WARNING: please use AtomPairGenerator
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03] Test atom-pair additional output
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Test Folded Atom Pairs.
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Test Rooted Atom Pairs.
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Test ignoring atoms in Atom Pairs.
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Test Atom Pairs including info about chirality.
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Test Morgan Fingerprints.
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03] Test morgan fp generator
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Test Morgan Fingerprints using fromAtoms argument.
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Test Morgan Fingerprints as bit vects.
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Test Morgan Fingerprints with feature invariants.
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Test additional Morgan fingerprints options.
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Test GitHub Issue 695: Include cis/trans stereochemistry when useChirality=true with the morgan fingerprints
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03]     Single atoms setting radius 1 bits in Morgan fingerprints  
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03] Test different invariant generator combinations
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03] Test invariant overriding
-128: [19:11:03]   done
-128: [19:11:03] -------------------------------------
-128: [19:11:03] Test RDKit fp generator
-128: [19:11:08]   done
-128: [19:11:08] -------------------------------------
-128: [19:11:08]     Test unfolded version of RDKFP   
-128: [19:11:08] -------------------------------------
-128: [19:11:08] Test topological torsion fp generator
-128: [19:11:08] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-128: [19:11:08] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-128: [19:11:08] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-128: [19:11:08] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-128: [19:11:08] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-128: [19:11:08] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-128: [19:11:08] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-128: [19:11:08] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-128: [19:11:08] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-128: [19:11:09] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-128: [19:11:09]   done
-128: [19:11:09] -------------------------------------
-128: [19:11:09]     Test Topological Torsions.
-128: [19:11:09]   done
-128: [19:11:09] -------------------------------------
-128: [19:11:09]     Test Folded torsions.
-128: [19:11:09]   done
-128: [19:11:09] -------------------------------------
-128: [19:11:09]     Test Bulk Topological Torsions.
-128: [19:11:11]   done
-128: [19:11:11] -------------------------------------
-128: [19:11:11]     Test Rooted Topological Torsions.
-128: [19:11:11]   done
-128: [19:11:11] -------------------------------------
-128: [19:11:11]     Test ignoring atoms in Topological Torsions.
-128: [19:11:11]   done
-128: [19:11:11] -------------------------------------
-128: [19:11:11] -------------------------------------
-128: [19:11:11]     Test Topological Torsions including info about chirality.
-128: [19:11:11]   done
-128: [19:11:11] -------------------------------------
-128: [19:11:11]     Test GitHub Issue 25: fingerprint backwards compatibility.
-128: [19:11:11]   done
-128: [19:11:11] -------------------------------------
-128: [19:11:11]     Test GitHub Issue 334: explicit Hs in SMILES modifies atom pair (and topological torsion) FP.
-128: [19:11:11]   done
-128: [19:11:11] -------------------------------------
-128: [19:11:11]     Test GitHub Issue 811: rooted atom fingerprint non identical for the same molecules #811
-128: [19:11:11]   done
-128: [19:11:11] -------------------------------------
-128: [19:11:11]     Test convenience and bulk fp calculation functions
-128: [19:11:17]   done
-128: [19:11:17] -------------------------------------
-128: [19:11:17]     Test GitHub Issue #6958
-128: [19:11:17] DEPRECATION WARNING: please use AtomPairGenerator
-124/230 Test #128: testFingerprintGenerators ..............   Passed   14.91 sec
+128: [02:00:43] -------------------------------------
+128: [02:00:43] Test atom-pair fp generator
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43] Test atom-pair fp generator with different arguments
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43] Test compatibility between atom pair implementation for FingerprintGenerator and old atom pairs implementation
+128: [02:00:43] DEPRECATION WARNING: please use AtomPairGenerator
+128: [02:00:43] DEPRECATION WARNING: please use AtomPairGenerator
+128: [02:00:43] DEPRECATION WARNING: please use AtomPairGenerator
+128: [02:00:43] DEPRECATION WARNING: please use AtomPairGenerator
+128: [02:00:43] DEPRECATION WARNING: please use AtomPairGenerator
+128: [02:00:43] DEPRECATION WARNING: please use AtomPairGenerator
+128: [02:00:43] DEPRECATION WARNING: please use AtomPairGenerator
+128: [02:00:43] DEPRECATION WARNING: please use AtomPairGenerator
+128: [02:00:43] DEPRECATION WARNING: please use AtomPairGenerator
+128: [02:00:43] DEPRECATION WARNING: please use AtomPairGenerator
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43] Test atom-pair additional output
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Test Folded Atom Pairs.
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Test Rooted Atom Pairs.
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Test ignoring atoms in Atom Pairs.
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Test Atom Pairs including info about chirality.
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Test Morgan Fingerprints.
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43] Test morgan fp generator
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Test Morgan Fingerprints using fromAtoms argument.
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Test Morgan Fingerprints as bit vects.
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Test Morgan Fingerprints with feature invariants.
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Test additional Morgan fingerprints options.
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Test GitHub Issue 695: Include cis/trans stereochemistry when useChirality=true with the morgan fingerprints
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43]     Single atoms setting radius 1 bits in Morgan fingerprints  
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43] Test different invariant generator combinations
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43] Test invariant overriding
+128: [02:00:43]   done
+128: [02:00:43] -------------------------------------
+128: [02:00:43] Test RDKit fp generator
+126: pass 2
+126:  launch :0
+126:  launch :1
+126:  launch :2
+126:  launch :3
+123: Warning: Atom Count for residue LYS80A does not match expected count
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test unfolded version of RDKFP   
+128: [02:00:44] -------------------------------------
+128: [02:00:44] Test topological torsion fp generator
+128: [02:00:44] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+128: [02:00:44] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+128: [02:00:44] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+128: [02:00:44] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+128: [02:00:44] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+128: [02:00:44] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+128: [02:00:44] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+128: [02:00:44] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+128: [02:00:44] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+128: [02:00:44] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test Topological Torsions.
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test Folded torsions.
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test Bulk Topological Torsions.
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test Rooted Topological Torsions.
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test ignoring atoms in Topological Torsions.
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test Topological Torsions including info about chirality.
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test GitHub Issue 25: fingerprint backwards compatibility.
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test GitHub Issue 334: explicit Hs in SMILES modifies atom pair (and topological torsion) FP.
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test GitHub Issue 811: rooted atom fingerprint non identical for the same molecules #811
+128: [02:00:44]   done
+128: [02:00:44] -------------------------------------
+128: [02:00:44]     Test convenience and bulk fp calculation functions
+128: [02:00:45]   done
+128: [02:00:45] -------------------------------------
+128: [02:00:45]     Test GitHub Issue #6958
+128: [02:00:45] DEPRECATION WARNING: please use AtomPairGenerator
+125/230 Test #128: testFingerprintGenerators ..............   Passed    2.45 sec
 test 129
         Start 129: fpTestCatch
 
 129: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/fpTestCatch
 129: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints
 129: Test timeout computed to be: 1500
-129: Randomness seeded to: 3466867460
+129: Randomness seeded to: 4049484155
 129: 
 129: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 129: fpTestCatch is a Catch2 v3.7.1 host application.
@@ -32761,8 +32803,8 @@
 129: test cases:  16 |  15 passed | 1 failed
 129: assertions: 188 | 186 passed | 2 failed
 129: 
-125/230 Test #129: fpTestCatch ............................***Failed    0.90 sec
-Randomness seeded to: 3466867460
+126/230 Test #129: fpTestCatch ............................***Failed    0.18 sec
+Randomness seeded to: 4049484155
 
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 fpTestCatch is a Catch2 v3.7.1 host application.
@@ -32810,18 +32852,18 @@
 130: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/fpGenTestCatch
 130: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints
 130: Test timeout computed to be: 1500
-130: Randomness seeded to: 3889110747
+130: Randomness seeded to: 2489733446
 130: ===============================================================================
 130: All tests passed (2692 assertions in 5 test cases)
 130: 
-126/230 Test #130: fpGenTestCatch .........................   Passed    2.18 sec
+127/230 Test #130: fpGenTestCatch .........................   Passed    0.53 sec
 test 131
         Start 131: pyTestGenerator
 
 131: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap/testGenerators.py"
 131: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap
 131: Test timeout computed to be: 1500
-127/230 Test #131: pyTestGenerator ........................***Exception: SegFault  3.71 sec
+128/230 Test #131: pyTestGenerator ........................***Exception: SegFault  0.84 sec
 
 test 132
         Start 132: pyTestMHFP
@@ -32829,7 +32871,7 @@
 132: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Fingerprints/Wrap/testMHFP.py"
 132: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/Wrap
 132: Test timeout computed to be: 1500
-128/230 Test #132: pyTestMHFP .............................***Exception: SegFault  3.33 sec
+129/230 Test #132: pyTestMHFP .............................***Exception: SegFault  1.10 sec
 
 test 133
         Start 133: testPartialCharges
@@ -32837,14 +32879,16 @@
 133: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/testPartialCharges
 133: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges
 133: Test timeout computed to be: 1500
-129/230 Test #133: testPartialCharges .....................   Passed    0.35 sec
+130/230 Test #133: testPartialCharges .....................   Passed    0.06 sec
 test 134
         Start 134: pyPartialCharges
 
 134: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py"
 134: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap
 134: Test timeout computed to be: 1500
-130/230 Test #134: pyPartialCharges .......................***Exception: SegFault  3.04 sec
+123: Warning: Atom Count for residue GLU150A does not match expected count
+123: Warning: Atom Count for residue ASN157A does not match expected count
+131/230 Test #134: pyPartialCharges .......................***Exception: SegFault  0.76 sec
 
 test 135
         Start 135: testMolTransforms
@@ -32882,28 +32926,25 @@
 135: 	 testWeightedCentroid 
 135: 
 135: ***********************************************************
-131/230 Test #135: testMolTransforms ......................   Passed    0.77 sec
+132/230 Test #135: testMolTransforms ......................   Passed    0.37 sec
 test 136
         Start 136: molTransformsTestCatch
 
 136: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/molTransformsTestCatch
 136: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms
 136: Test timeout computed to be: 1500
-136: Randomness seeded to: 2515097997
+136: Randomness seeded to: 949293215
 136: ===============================================================================
 136: All tests passed (4 assertions in 1 test case)
 136: 
-132/230 Test #136: molTransformsTestCatch .................   Passed    0.53 sec
+133/230 Test #136: molTransformsTestCatch .................   Passed    0.19 sec
 test 137
         Start 137: pyMolTransforms
 
 137: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py"
 137: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap
 137: Test timeout computed to be: 1500
-126: [19:11:35]   done
-126: [19:11:35] -------------------------------------
-126: [19:11:35]     Test GitHub Issue 258: Bad pattern fingerprint for query molecule
-133/230 Test #137: pyMolTransforms ........................***Exception: SegFault  3.23 sec
+134/230 Test #137: pyMolTransforms ........................***Exception: SegFault  1.67 sec
 
 test 138
         Start 138: forceFieldHelpersCatch
@@ -32911,27 +32952,136 @@
 138: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/forceFieldHelpersCatch
 138: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers
 138: Test timeout computed to be: 1500
-126: [19:11:35]   done
-126: [19:11:35] -------------------------------------
-126: [19:11:35]     Test GitHub Issue 334: explicit Hs in SMILES modifies atom pair (and topological torsion) FP.
-126: [19:11:35] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:35] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:35] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:35] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:35]   done
-126: [19:11:35] -------------------------------------
-126: [19:11:35]     Test GitHub Issue 695: Include cis/trans stereochemistry when useChirality=true with the morgan fingerprints
-126: [19:11:35]   done
-126: [19:11:35] -------------------------------------
-126: [19:11:35]     Test GitHub Issue 811: rooted atom fingerprint non identical for the same molecules #811
-126: [19:11:35] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:35] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:35] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:35]   done
-126: [19:11:35] -------------------------------------
-126: [19:11:35]     Test unfolded version of RDKFP   
-126: [19:11:35] -------------------------------------
-126: [19:11:35]     Test bitinfo of RDKFP   
+138: Randomness seeded to: 410693265
+138: ===============================================================================
+138: All tests passed (11 assertions in 1 test case)
+138: 
+135/230 Test #138: forceFieldHelpersCatch .................   Passed    0.26 sec
+test 139
+        Start 139: testMMFFForceFieldHelpers
+
+139: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFForceFieldHelpers
+139: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF
+139: Test timeout computed to be: 1500
+139: [02:00:51] -------------------------------------
+139: [02:00:51]     Test MMFF atom types.
+139: [02:00:51]   done
+139: [02:00:51] -------------------------------------
+139: [02:00:51]     Testing MMFF builder tools.
+139: [02:00:51]   done
+139: [02:00:51] -------------------------------------
+139: [02:00:51]     Testing MMFF builder+minimization.
+139: [02:00:52]   done
+139: [02:00:52] -------------------------------------
+139: [02:00:52]     Testing Issue239.
+139: [02:00:52]   done
+139: [02:00:52] -------------------------------------
+139: [02:00:52]     Testing calcEnergy with passed coords.
+139: [02:00:52]   done
+139: [02:00:52] -------------------------------------
+139: [02:00:52]     Testing calcGrad.
+139: [02:00:52]   done
+139: [02:00:52] -------------------------------------
+139: [02:00:52]     Testing Issue242.
+139: [02:00:53]   done
+139: [02:00:53] -------------------------------------
+139: [02:00:53]     Testing github 308: crash during MMFF parameterization .
+139: [02:00:53] -------------------------------------
+139: [02:00:53]     Testing SFIssue1653802.
+139: [02:00:53]   done
+139: [02:00:53] -------------------------------------
+139: [02:00:53]     Testing SFIssue2378119.
+139: [02:00:53]   done
+139: [02:00:53] -------------------------------------
+139: [02:00:53]     Test MMFF force-field parameter getters.
+139: [02:00:53] -------------------------------------
+139: [02:00:53]     Test MMFF multithreading
+139: generating reference data
+139: processing
+139:  launch :0
+139:  launch :1
+139:  launch :2
+139:  launch :3
+139: [02:00:55] Rep: 0 Mol:3
+139: [02:00:55] Rep: 0 Mol:2
+139: [02:00:55] Rep: 0 Mol:0
+139: [02:00:55] Rep: 0 Mol:1
+139: [02:00:55] Rep: 0 Mol:5
+139: [02:00:55] Rep: 0 Mol:9
+139: [02:00:55] Rep: 0 Mol:4
+139: [02:00:55] Rep: 0 Mol:6
+139: [02:00:55] Rep: 0 Mol:13
+139: [02:00:55] Rep: 0 Mol:10
+139: [02:00:55] Rep: 0 Mol:8
+139: [02:00:55] Rep: 0 Mol:12
+139: [02:00:55] Rep: 0 Mol:16
+139: [02:00:55] Rep: 0 Mol:17
+139: [02:00:55] Rep: 0 Mol:7
+139: [02:00:55] Rep: 0 Mol:20
+139: [02:00:55] Rep: 0 Mol:11
+139: [02:00:55] Rep: 0 Mol:15
+139: [02:00:55] Rep: 0 Mol:21
+139: [02:00:55] Rep: 0 Mol:19
+139: [02:00:55] Rep: 0 Mol:24
+139: [02:00:55] Rep: 0 Mol:25
+139: [02:00:55] Rep: 0 Mol:23
+139: [02:00:55] Rep: 0 Mol:27
+139: [02:00:55] Rep: 0 Mol:28
+139: [02:00:55] Rep: 0 Mol:14
+139: [02:00:55] Rep: 0 Mol:31
+139: [02:00:55] Rep: 0 Mol:18
+139: [02:00:55] Rep: 0 Mol:29
+139: [02:00:55] Rep: 0 Mol:22
+139: [02:00:55] Rep: 0 Mol:26
+139: [02:00:55] Rep: 0 Mol:30
+139: [02:00:56] Rep: 20 Mol:1
+139: [02:00:56] Rep: 20 Mol:5
+139: [02:00:56] Rep: 20 Mol:9
+139: [02:00:56] Rep: 20 Mol:13
+139: [02:00:56] Rep: 20 Mol:17
+139: [02:00:56] Rep: 20 Mol:3
+139: [02:00:56] Rep: 20 Mol:21
+139: [02:00:56] Rep: 20 Mol:25
+139: [02:00:56] Rep: 20 Mol:29
+139: [02:00:56] Rep: 20 Mol:7
+139: [02:00:56] Rep: 20 Mol:11
+139: [02:00:56] Rep: 20 Mol:15
+139: [02:00:56] Rep: 20 Mol:19
+139: [02:00:56] Rep: 20 Mol:23
+139: [02:00:56] Rep: 20 Mol:27
+139: [02:00:56] Rep: 20 Mol:31
+139: [02:00:56] Rep: 20 Mol:2
+139: [02:00:56] Rep: 20 Mol:6
+139: [02:00:56] Rep: 20 Mol:10
+139: [02:00:56] Rep: 20 Mol:14
+139: [02:00:56] Rep: 20 Mol:18
+139: [02:00:56] Rep: 20 Mol:22
+139: [02:00:56] Rep: 20 Mol:26
+139: [02:00:56] Rep: 20 Mol:30
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56]     Test GitHub Issue 258: Bad pattern fingerprint for query molecule
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56]     Test GitHub Issue 334: explicit Hs in SMILES modifies atom pair (and topological torsion) FP.
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56]     Test GitHub Issue 695: Include cis/trans stereochemistry when useChirality=true with the morgan fingerprints
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56]     Test GitHub Issue 811: rooted atom fingerprint non identical for the same molecules #811
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56]     Test unfolded version of RDKFP   
+126: [02:00:56] -------------------------------------
+126: [02:00:56]     Test bitinfo of RDKFP   
 126:    562:  [ 2 ], 
 126:    709:  [ 0 1 ], 
 126:    1118:  [ 0 1 2 ], 
@@ -32943,79 +33093,84 @@
 126:    1772:  [ 0 ],  [ 1 ], 
 126:    1813:  [ 0 1 ], 
 126:   ------------ 
-126: [19:11:36] -------------------------------------
-126: [19:11:36]     Single atoms setting radius 1 bits in Morgan fingerprints  
-126: [19:11:36]   done
-126: [19:11:36] -------------------------------------
-126: [19:11:36] Github #879: Pattern fingerprint should set bits for single-atom fragments.
-126: [19:11:36]   done
-126: [19:11:36] -------------------------------------
-126: [19:11:36] Github #1496: Pattern fingerprint setting bad bits for degree zero atoms
-126: [19:11:36]   done
-126: [19:11:36] -------------------------------------
-126: [19:11:36] Github #1793: Fingerprint segfaults with branchedPaths=False and useHs=False
-126: [19:11:36]   done
-126: [19:11:36] -------------------------------------
-126: [19:11:36] Github #1993: fingerprinters that use R/S labels should force a call to assignStereochemistry() if it hasn't already been called
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use AtomPairGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36] DEPRECATION WARNING: please use TopologicalTorsionGenerator
-126: [19:11:36]   done
-126: [19:11:36] -------------------------------------
-126: [19:11:36] Github #2115: BitInfo not complete for RDKFingerprint
-126: [19:11:36]   done
-126: [19:11:36] -------------------------------------
-126: [19:11:36] Github #3723: Fingerprint crash for mols with Zero order bonds
-126: [19:11:36]   done
-134/230 Test #126: testFingerprints .......................   Passed   57.56 sec
-test 139
-        Start 139: testMMFFForceFieldHelpers
-
-139: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFForceFieldHelpers
-139: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF
-139: Test timeout computed to be: 1500
-138: Randomness seeded to: 2789336654
-138: ===============================================================================
-138: All tests passed (11 assertions in 1 test case)
-138: 
-135/230 Test #138: forceFieldHelpersCatch .................   Passed    0.43 sec
+126: [02:00:56] -------------------------------------
+126: [02:00:56]     Single atoms setting radius 1 bits in Morgan fingerprints  
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56] Github #879: Pattern fingerprint should set bits for single-atom fragments.
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56] Github #1496: Pattern fingerprint setting bad bits for degree zero atoms
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56] Github #1793: Fingerprint segfaults with branchedPaths=False and useHs=False
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56] Github #1993: fingerprinters that use R/S labels should force a call to assignStereochemistry() if it hasn't already been called
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use AtomPairGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56] DEPRECATION WARNING: please use TopologicalTorsionGenerator
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56] Github #2115: BitInfo not complete for RDKFingerprint
+126: [02:00:56]   done
+126: [02:00:56] -------------------------------------
+126: [02:00:56] Github #3723: Fingerprint crash for mols with Zero order bonds
+126: [02:00:56]   done
+139: [02:00:56] Rep: 20 Mol:0
+139: [02:00:56] Rep: 20 Mol:4
+136/230 Test #126: testFingerprints .......................   Passed   14.51 sec
 test 140
         Start 140: testMMFFForceFieldHelpersMultiThread
 
 140: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFForceFieldHelpersMultiThread
 140: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF
 140: Test timeout computed to be: 1500
-139: [19:11:36] -------------------------------------
-139: [19:11:36]     Test MMFF atom types.
-140: [19:11:36] -------------------------------------
-140: [19:11:36]     Test MMFF multithreading
-139: [19:11:36]   done
-139: [19:11:36] -------------------------------------
-139: [19:11:36]     Testing MMFF builder tools.
-139: [19:11:36]   done
-139: [19:11:36] -------------------------------------
-139: [19:11:36]     Testing MMFF builder+minimization.
+139: [02:00:56] Rep: 20 Mol:8
+139: [02:00:56] Rep: 20 Mol:12
+139: [02:00:56] Rep: 20 Mol:16
+139: [02:00:56] Rep: 20 Mol:20
+139: [02:00:56] Rep: 20 Mol:24
+139: [02:00:56] Rep: 20 Mol:28
+140: [02:00:56] -------------------------------------
+140: [02:00:56]     Test MMFF multithreading
+139: [02:00:57] Rep: 40 Mol:2
+139: [02:00:57] Rep: 40 Mol:6
+139: [02:00:57] Rep: 40 Mol:10
+139: [02:00:57] Rep: 40 Mol:14
+139: [02:00:57] Rep: 40 Mol:18
+139: [02:00:57] Rep: 40 Mol:22
+139: [02:00:57] Rep: 40 Mol:26
+139: [02:00:57] Rep: 40 Mol:30
+139: [02:00:57] Rep: 40 Mol:3
+139: [02:00:57] Rep: 40 Mol:7
+139: [02:00:57] Rep: 40 Mol:11
+139: [02:00:57] Rep: 40 Mol:15
+139: [02:00:57] Rep: 40 Mol:19
+139: [02:00:57] Rep: 40 Mol:23
+139: [02:00:57] Rep: 40 Mol:27
+139: [02:00:57] Rep: 40 Mol:31
 140: processing
 140:  launch :0
 140:  launch :1
@@ -33041,6 +33196,216 @@
 140:  launch :21
 140:  launch :22
 140:  launch :23
+139: [02:00:57] Rep: 40 Mol:0
+139: [02:00:57] Rep: 40 Mol:4
+139: [02:00:57] Rep: 40 Mol:1
+139: [02:00:57] Rep: 40 Mol:5
+139: [02:00:57] Rep: 40 Mol:9
+139: [02:00:57] Rep: 40 Mol:13
+139: [02:00:57] Rep: 40 Mol:8
+139: [02:00:57] Rep: 40 Mol:12
+139: [02:00:57] Rep: 40 Mol:17
+139: [02:00:57] Rep: 40 Mol:21
+139: [02:00:57] Rep: 40 Mol:25
+139: [02:00:57] Rep: 40 Mol:16
+139: [02:00:57] Rep: 40 Mol:20
+139: [02:00:57] Rep: 40 Mol:29
+139: [02:00:57] Rep: 40 Mol:24
+139: [02:00:57] Rep: 40 Mol:28
+139: [02:00:58] Rep: 60 Mol:0
+139: [02:00:58] Rep: 60 Mol:4
+139: [02:00:58] Rep: 60 Mol:3
+139: [02:00:58] Rep: 60 Mol:8
+139: [02:00:58] Rep: 60 Mol:7
+139: [02:00:58] Rep: 60 Mol:12
+139: [02:00:58] Rep: 60 Mol:16
+139: [02:00:58] Rep: 60 Mol:11
+139: [02:00:58] Rep: 60 Mol:15
+139: [02:00:58] Rep: 60 Mol:20
+139: [02:00:58] Rep: 60 Mol:19
+139: [02:00:58] Rep: 60 Mol:23
+139: [02:00:58] Rep: 60 Mol:24
+139: [02:00:58] Rep: 60 Mol:28
+139: [02:00:58] Rep: 60 Mol:27
+139: [02:00:58] Rep: 60 Mol:31
+140: done
+139: [02:00:58] Rep: 60 Mol:2
+139: [02:00:58] Rep: 60 Mol:6
+139: [02:00:58] Rep: 60 Mol:10
+139: [02:00:58] Rep: 60 Mol:14
+139: [02:00:58] Rep: 60 Mol:18
+139: [02:00:58] Rep: 60 Mol:22
+139: [02:00:58] Rep: 60 Mol:26
+139: [02:00:58] Rep: 60 Mol:30
+139: [02:00:58] Rep: 80 Mol:3
+139: [02:00:58] Rep: 80 Mol:7
+139: [02:00:58] Rep: 80 Mol:11
+139: [02:00:58] Rep: 80 Mol:15
+139: [02:00:58] Rep: 80 Mol:19
+139: [02:00:58] Rep: 80 Mol:23
+139: [02:00:58] Rep: 80 Mol:27
+139: [02:00:58] Rep: 80 Mol:31
+140: [02:00:58]   done
+139: [02:00:58] Rep: 60 Mol:1
+137/230 Test #140: testMMFFForceFieldHelpersMultiThread ...   Passed    2.12 sec
+test 141
+        Start 141: testUFFForceFieldHelpers
+
+141: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF/testUFFForceFieldHelpers
+141: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF
+141: Test timeout computed to be: 1500
+139: [02:00:58] Rep: 60 Mol:5
+139: [02:00:58] Rep: 60 Mol:9
+139: [02:00:58] Rep: 60 Mol:13
+139: [02:00:58] Rep: 60 Mol:17
+139: [02:00:58] Rep: 60 Mol:21
+139: [02:00:58] Rep: 60 Mol:25
+139: [02:00:58] Rep: 60 Mol:29
+141: [02:00:58] -------------------------------------
+141: [02:00:58]     Test UFF atom labels.
+141: [02:00:58]   done
+141: [02:00:58] -------------------------------------
+141: [02:00:58]     Test UFF atom typer.
+141: [02:00:58]   done
+141: [02:00:58] -------------------------------------
+141: [02:00:58]     Testing UFF builder tools.
+141: [02:00:58]   done
+141: [02:00:58] -------------------------------------
+141: [02:00:58]     Testing UFF builder+minimization.
+139: [02:00:59] Rep: 80 Mol:0
+139: [02:00:59] Rep: 80 Mol:2
+139: [02:00:59] Rep: 80 Mol:4
+139: [02:00:59] Rep: 80 Mol:6
+139: [02:00:59] Rep: 80 Mol:10
+139: [02:00:59] Rep: 80 Mol:14
+139: [02:00:59] Rep: 80 Mol:8
+139: [02:00:59] Rep: 80 Mol:18
+139: [02:00:59] Rep: 80 Mol:22
+139: [02:00:59] Rep: 80 Mol:26
+139: [02:00:59] Rep: 80 Mol:30
+139: [02:00:59] Rep: 80 Mol:12
+139: [02:00:59] Rep: 80 Mol:16
+139: [02:00:59] Rep: 80 Mol:20
+139: [02:00:59] Rep: 80 Mol:24
+139: [02:00:59] Rep: 80 Mol:28
+141: [02:00:59]   done
+141: [02:00:59] -------------------------------------
+141: [02:00:59]     Testing UFF special cases.
+141: [02:00:59] UFFTYPER: Unrecognized charge state for atom: 0
+141: [02:00:59]   done
+141: [02:00:59] -------------------------------------
+141: [02:00:59]     Testing Issue239.
+141: [02:00:59]   done
+141: [02:00:59] -------------------------------------
+141: [02:00:59]     Testing calcEnergy with passed coords.
+139: [02:00:59] Rep: 80 Mol:1
+139: [02:00:59] Rep: 80 Mol:5
+139: [02:00:59] Rep: 80 Mol:9
+139: [02:00:59] Rep: 80 Mol:13
+139: [02:00:59] Rep: 80 Mol:17
+139: [02:00:59] Rep: 80 Mol:21
+139: [02:00:59] Rep: 80 Mol:25
+141: [02:00:59]   done
+141: [02:00:59] -------------------------------------
+141: [02:00:59]     Testing calcGrad.
+139: [02:00:59] Rep: 80 Mol:29
+141: [02:00:59]   done
+141: [02:00:59] -------------------------------------
+141: [02:00:59]     Testing SFIssue1653802.
+141: [02:01:00]   done
+141: [02:01:00] -------------------------------------
+141: [02:01:00]     Testing SFIssue2378119.
+141: [02:01:00]   done
+141: [02:01:00] -------------------------------------
+141: [02:01:00]     Test UFF force-field parameter getters.
+141: [02:01:00] -------------------------------------
+141: [02:01:00]     Testing handling missing parameters.
+141: [02:01:00] UFFTYPER: Unrecognized hybridization for atom: 0
+141: [02:01:00] UFFTYPER: Unrecognized atom type: Cu+1 (0)
+141: [02:01:00] UFFTYPER: Unrecognized hybridization for atom: 0
+141: [02:01:00] UFFTYPER: Unrecognized atom type: Cu+1 (0)
+141: [02:01:00]   done
+141: [02:01:00] -------------------------------------
+141: [02:01:00]     Testing SFIssue3009337.
+141: [02:01:00]   done
+141: [02:01:00] -------------------------------------
+141: [02:01:00]     Test UFF multithreading
+141: generating reference data
+139: [02:01:00]   done
+139: [02:01:00] -------------------------------------
+139: [02:01:00]     Test MMFF multithreading2
+141: processing
+141:  launch :0
+141:  launch :1
+141:  launch :2
+141:  launch :3
+141: [02:01:00] Rep: 0 Mol:2
+141: [02:01:00] Rep: 0 Mol:1
+141: [02:01:00] Rep: 0 Mol:0
+141: [02:01:00] Rep: 0 Mol:3
+141: [02:01:00] Rep: 0 Mol:5
+141: [02:01:00] Rep: 0 Mol:9
+141: [02:01:00] Rep: 0 Mol:13
+141: [02:01:00] Rep: 0 Mol:4
+141: [02:01:00] Rep: 0 Mol:6
+141: [02:01:00] Rep: 0 Mol:17
+141: [02:01:00] Rep: 0 Mol:10
+141: [02:01:01] Rep: 0 Mol:7
+141: [02:01:01] Rep: 0 Mol:21
+141: [02:01:01] Rep: 0 Mol:11
+141: [02:01:01] Rep: 0 Mol:25
+141: [02:01:01] Rep: 0 Mol:14
+141: [02:01:01] Rep: 0 Mol:15
+141: [02:01:01] Rep: 0 Mol:18
+141: [02:01:01] Rep: 0 Mol:19
+141: [02:01:01] Rep: 0 Mol:29
+141: [02:01:01] Rep: 0 Mol:8
+141: [02:01:01] Rep: 0 Mol:23
+141: [02:01:01] Rep: 0 Mol:27
+141: [02:01:01] Rep: 0 Mol:22
+141: [02:01:01] Rep: 0 Mol:26
+141: [02:01:01] Rep: 0 Mol:12
+141: [02:01:01] Rep: 0 Mol:16
+141: [02:01:01] Rep: 0 Mol:31
+141: [02:01:01] Rep: 0 Mol:30
+141: [02:01:01] Rep: 0 Mol:20
+141: [02:01:01] Rep: 0 Mol:24
+141: [02:01:01] Rep: 0 Mol:28
+141: [02:01:03] Rep: 100 Mol:3
+141: [02:01:03] Rep: 100 Mol:7
+141: [02:01:03] Rep: 100 Mol:11
+141: [02:01:03] Rep: 100 Mol:15
+141: [02:01:03] Rep: 100 Mol:19
+141: [02:01:03] Rep: 100 Mol:23
+141: [02:01:03] Rep: 100 Mol:27
+141: [02:01:03] Rep: 100 Mol:31
+141: [02:01:05] Rep: 100 Mol:1
+141: [02:01:05] Rep: 100 Mol:5
+141: [02:01:05] Rep: 100 Mol:9
+141: [02:01:05] Rep: 100 Mol:13
+141: [02:01:05] Rep: 100 Mol:17
+141: [02:01:05] Rep: 100 Mol:21
+141: [02:01:05] Rep: 100 Mol:25
+141: [02:01:05] Rep: 100 Mol:29
+141: [02:01:05] Rep: 100 Mol:0
+141: [02:01:05] Rep: 100 Mol:4
+141: [02:01:05] Rep: 100 Mol:8
+141: [02:01:05] Rep: 100 Mol:12
+141: [02:01:05] Rep: 100 Mol:16
+141: [02:01:05] Rep: 100 Mol:20
+141: [02:01:05] Rep: 100 Mol:24
+141: [02:01:05] Rep: 100 Mol:28
+141: [02:01:05] Rep: 100 Mol:2
+141: [02:01:05] Rep: 100 Mol:6
+141: [02:01:05] Rep: 100 Mol:10
+141: [02:01:05] Rep: 100 Mol:14
+141: [02:01:05] Rep: 100 Mol:18
+141: [02:01:05] Rep: 100 Mol:22
+141: [02:01:05] Rep: 100 Mol:26
+141: [02:01:05] Rep: 100 Mol:30
+139: [02:01:06]   done
+139: [02:01:06] -------------------------------------
+139: [02:01:06]     Test MMFF multithreading3
 123: Warning: Atom Count for residue GLU5A does not match expected count
 123: Warning: Atom Count for residue ASN39A does not match expected count
 123: Warning: Atom Count for residue GLU53A does not match expected count
@@ -33048,42 +33413,10 @@
 123: Warning: Atom Count for residue LYS80A does not match expected count
 123: Warning: Atom Count for residue GLU150A does not match expected count
 123: Warning: Atom Count for residue ASN157A does not match expected count
-139: [19:11:38]   done
-139: [19:11:38] -------------------------------------
-139: [19:11:38]     Testing Issue239.
 123: ===============================================================================
 123: All tests passed (515 assertions in 10 test cases)
 123: 
-136/230 Test #123: descriptorsTestCatch ...................   Passed   71.19 sec
-test 141
-        Start 141: testUFFForceFieldHelpers
-
-141: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF/testUFFForceFieldHelpers
-141: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF
-141: Test timeout computed to be: 1500
-139: [19:11:39]   done
-139: [19:11:39] -------------------------------------
-139: [19:11:39]     Testing calcEnergy with passed coords.
-141: [19:11:39] -------------------------------------
-141: [19:11:39]     Test UFF atom labels.
-141: [19:11:39]   done
-141: [19:11:39] -------------------------------------
-141: [19:11:39]     Test UFF atom typer.
-141: [19:11:39]   done
-141: [19:11:39] -------------------------------------
-141: [19:11:39]     Testing UFF builder tools.
-141: [19:11:39]   done
-141: [19:11:39] -------------------------------------
-141: [19:11:39]     Testing UFF builder+minimization.
-139: [19:11:39]   done
-139: [19:11:39] -------------------------------------
-139: [19:11:39]     Testing calcGrad.
-140: done
-139: [19:11:40]   done
-139: [19:11:40] -------------------------------------
-139: [19:11:40]     Testing Issue242.
-140: [19:11:40]   done
-137/230 Test #140: testMMFFForceFieldHelpersMultiThread ...   Passed    3.99 sec
+138/230 Test #123: descriptorsTestCatch ...................   Passed   27.73 sec
 test 142
         Start 142: testCrystalForceField
 
@@ -33092,63 +33425,17 @@
 142: Test timeout computed to be: 1500
 142: -------------------------------------
 142:  Test CrystalFF torsional term.
-139: [19:11:40]   done
-139: [19:11:40] -------------------------------------
-139: [19:11:40]     Testing github 308: crash during MMFF parameterization .
-139: [19:11:40] -------------------------------------
-139: [19:11:40]     Testing SFIssue1653802.
-139: [19:11:40]   done
-139: [19:11:40] -------------------------------------
-139: [19:11:40]     Testing SFIssue2378119.
-139: [19:11:40]   done
-139: [19:11:40] -------------------------------------
-139: [19:11:40]     Test MMFF force-field parameter getters.
-139: [19:11:40] -------------------------------------
-139: [19:11:40]     Test MMFF multithreading
-139: generating reference data
-141: [19:11:42]   done
-141: [19:11:42] -------------------------------------
-141: [19:11:42]     Testing UFF special cases.
-141: [19:11:42] UFFTYPER: Unrecognized charge state for atom: 0
-141: [19:11:42]   done
-141: [19:11:42] -------------------------------------
-141: [19:11:42]     Testing Issue239.
-141: [19:11:42]   done
-141: [19:11:42] -------------------------------------
-141: [19:11:42]     Testing calcEnergy with passed coords.
-138/230 Test #142: testCrystalForceField ..................   Passed    2.41 sec
+141: [02:01:08]   done
+141: [02:01:08] -------------------------------------
+141: [02:01:08]     Test UFF multithreading2
+139/230 Test #142: testCrystalForceField ..................   Passed    0.72 sec
 test 143
         Start 143: pyForceFieldHelpers
 
 143: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py"
 143: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap
 143: Test timeout computed to be: 1500
-141: [19:11:42]   done
-141: [19:11:42] -------------------------------------
-141: [19:11:42]     Testing calcGrad.
-141: [19:11:43]   done
-141: [19:11:43] -------------------------------------
-141: [19:11:43]     Testing SFIssue1653802.
-141: [19:11:43]   done
-141: [19:11:43] -------------------------------------
-141: [19:11:43]     Testing SFIssue2378119.
-141: [19:11:43]   done
-141: [19:11:43] -------------------------------------
-141: [19:11:43]     Test UFF force-field parameter getters.
-141: [19:11:43] -------------------------------------
-141: [19:11:43]     Testing handling missing parameters.
-141: [19:11:43] UFFTYPER: Unrecognized hybridization for atom: 0
-141: [19:11:43] UFFTYPER: Unrecognized atom type: Cu+1 (0)
-141: [19:11:43] UFFTYPER: Unrecognized hybridization for atom: 0
-141: [19:11:43] UFFTYPER: Unrecognized atom type: Cu+1 (0)
-141: [19:11:43]   done
-141: [19:11:43] -------------------------------------
-141: [19:11:43]     Testing SFIssue3009337.
-141: [19:11:43]   done
-141: [19:11:43] -------------------------------------
-141: [19:11:43]     Test UFF multithreading
-141: generating reference data
-139/230 Test #143: pyForceFieldHelpers ....................***Exception: SegFault  3.40 sec
+140/230 Test #143: pyForceFieldHelpers ....................***Exception: SegFault  2.09 sec
 
 test 144
         Start 144: testDistGeomHelpers
@@ -33156,513 +33443,276 @@
 144: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/testDistGeomHelpers
 144: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers
 144: Test timeout computed to be: 1500
-144: [19:11:46] ********************************************************
-144: [19:11:46] Testing DistGeomHelpers
-144: [19:11:46] 	---------------------------------
-144: [19:11:46] 	 test2 
+144: [02:01:11] ********************************************************
+144: [02:01:11] Testing DistGeomHelpers
+144: [02:01:11] 	---------------------------------
+144: [02:01:11] 	 test2 
 144: 
 144: go
 144: -------------------------------------
 144: 
-139: processing
-139:  launch :0
-139:  launch :1
-139:  launch :2
-139:  launch :3
-139: [19:11:48] Rep: 0 Mol:0
-139: [19:11:48] Rep: 0 Mol:3
-139: [19:11:48] Rep: 0 Mol:1
-139: [19:11:48] Rep: 0 Mol:2
-139: [19:11:48] Rep: 0 Mol:5
-139: [19:11:48] Rep: 0 Mol:4
-139: [19:11:48] Rep: 0 Mol:9
-139: [19:11:48] Rep: 0 Mol:6
-139: [19:11:48] Rep: 0 Mol:13
-139: [19:11:49] Rep: 0 Mol:8
-139: [19:11:49] Rep: 0 Mol:10
-139: [19:11:49] Rep: 0 Mol:17
-139: [19:11:49] Rep: 0 Mol:12
-139: [19:11:49] Rep: 0 Mol:16
-139: [19:11:49] Rep: 0 Mol:7
-139: [19:11:49] Rep: 0 Mol:11
-139: [19:11:49] Rep: 0 Mol:15
-139: [19:11:49] Rep: 0 Mol:20
-139: [19:11:49] Rep: 0 Mol:19
-139: [19:11:49] Rep: 0 Mol:23
-139: [19:11:49] Rep: 0 Mol:27
-139: [19:11:49] Rep: 0 Mol:24
-139: [19:11:49] Rep: 0 Mol:31
-139: [19:11:49] Rep: 0 Mol:28
-141: processing
-141:  launch :0
-141:  launch :1
-141:  launch :2
-141:  launch :3
-141: [19:11:49] Rep: 0 Mol:2
-141: [19:11:49] Rep: 0 Mol:3
-141: [19:11:49] Rep: 0 Mol:1
-141: [19:11:49] Rep: 0 Mol:0
-141: [19:11:50] Rep: 0 Mol:5
-141: [19:11:50] Rep: 0 Mol:9
-139: [19:11:50] Rep: 0 Mol:14
-139: [19:11:50] Rep: 0 Mol:21
-141: [19:11:50] Rep: 0 Mol:4
-141: [19:11:50] Rep: 0 Mol:13
-139: [19:11:50] Rep: 0 Mol:18
-139: [19:11:50] Rep: 0 Mol:25
-141: [19:11:50] Rep: 0 Mol:6
-141: [19:11:50] Rep: 0 Mol:7
-141: [19:11:50] Rep: 0 Mol:11
-139: [19:11:50] Rep: 0 Mol:22
-141: [19:11:50] Rep: 0 Mol:10
-141: [19:11:50] Rep: 0 Mol:17
-139: [19:11:50] Rep: 0 Mol:29
-141: [19:11:50] Rep: 0 Mol:15
-139: [19:11:50] Rep: 0 Mol:26
-141: [19:11:50] Rep: 0 Mol:19
-141: [19:11:50] Rep: 0 Mol:23
-141: [19:11:50] Rep: 0 Mol:27
-141: [19:11:50] Rep: 0 Mol:8
-141: [19:11:51] Rep: 0 Mol:31
-141: [19:11:51] Rep: 0 Mol:12
-141: [19:11:51] Rep: 0 Mol:16
-141: [19:11:51] Rep: 0 Mol:14
-139: [19:11:51] Rep: 0 Mol:30
-141: [19:11:51] Rep: 0 Mol:21
-141: [19:11:51] Rep: 0 Mol:18
-141: [19:11:51] Rep: 0 Mol:20
-141: [19:11:51] Rep: 0 Mol:25
-141: [19:11:51] Rep: 0 Mol:22
-141: [19:11:51] Rep: 0 Mol:26
-141: [19:11:51] Rep: 0 Mol:24
-141: [19:11:51] Rep: 0 Mol:29
-141: [19:11:51] Rep: 0 Mol:28
-141: [19:11:51] Rep: 0 Mol:30
-139: [19:11:53] Rep: 20 Mol:0
-139: [19:11:53] Rep: 20 Mol:4
-139: [19:11:53] Rep: 20 Mol:8
-139: [19:11:53] Rep: 20 Mol:12
-139: [19:11:53] Rep: 20 Mol:16
-139: [19:11:53] Rep: 20 Mol:20
-139: [19:11:53] Rep: 20 Mol:24
-139: [19:11:53] Rep: 20 Mol:28
-139: [19:11:53] Rep: 20 Mol:3
-139: [19:11:53] Rep: 20 Mol:7
-139: [19:11:53] Rep: 20 Mol:11
-139: [19:11:53] Rep: 20 Mol:15
-139: [19:11:53] Rep: 20 Mol:19
-139: [19:11:53] Rep: 20 Mol:23
-139: [19:11:53] Rep: 20 Mol:27
-139: [19:11:53] Rep: 20 Mol:31
-139: [19:11:54] Rep: 20 Mol:1
-139: [19:11:54] Rep: 20 Mol:5
-139: [19:11:54] Rep: 20 Mol:9
-139: [19:11:54] Rep: 20 Mol:13
-139: [19:11:54] Rep: 20 Mol:17
-139: [19:11:54] Rep: 20 Mol:21
-139: [19:11:54] Rep: 20 Mol:25
-139: [19:11:54] Rep: 20 Mol:29
-139: [19:11:56] Rep: 40 Mol:1
-139: [19:11:56] Rep: 40 Mol:5
-139: [19:11:56] Rep: 40 Mol:9
-139: [19:11:57] Rep: 40 Mol:3
-139: [19:11:57] Rep: 40 Mol:13
-139: [19:11:57] Rep: 40 Mol:17
-139: [19:11:57] Rep: 40 Mol:21
-139: [19:11:57] Rep: 40 Mol:7
-139: [19:11:57] Rep: 40 Mol:25
-139: [19:11:57] Rep: 40 Mol:11
-139: [19:11:57] Rep: 40 Mol:29
-139: [19:11:57] Rep: 40 Mol:15
-139: [19:11:57] Rep: 40 Mol:19
-139: [19:11:57] Rep: 40 Mol:23
-139: [19:11:57] Rep: 40 Mol:27
-139: [19:11:57] Rep: 40 Mol:31
-139: [19:11:57] Rep: 40 Mol:0
-139: [19:11:57] Rep: 40 Mol:4
-139: [19:11:57] Rep: 40 Mol:8
-139: [19:11:57] Rep: 20 Mol:2
-139: [19:11:57] Rep: 40 Mol:12
-139: [19:11:57] Rep: 40 Mol:16
-139: [19:11:57] Rep: 20 Mol:6
-139: [19:11:57] Rep: 20 Mol:10
-139: [19:11:57] Rep: 40 Mol:20
-139: [19:11:57] Rep: 40 Mol:24
-139: [19:11:57] Rep: 20 Mol:14
-139: [19:11:57] Rep: 40 Mol:28
-139: [19:11:57] Rep: 20 Mol:18
-139: [19:11:57] Rep: 20 Mol:22
-139: [19:11:57] Rep: 20 Mol:26
-139: [19:11:57] Rep: 20 Mol:30
-141: [19:11:59] Rep: 100 Mol:3
-141: [19:11:59] Rep: 100 Mol:7
-141: [19:11:59] Rep: 100 Mol:11
-141: [19:11:59] Rep: 100 Mol:15
-141: [19:11:59] Rep: 100 Mol:19
-141: [19:11:59] Rep: 100 Mol:23
-141: [19:11:59] Rep: 100 Mol:27
-139: [19:11:59] Rep: 60 Mol:3
-141: [19:11:59] Rep: 100 Mol:31
-139: [19:11:59] Rep: 60 Mol:7
-139: [19:11:59] Rep: 60 Mol:11
-139: [19:11:59] Rep: 60 Mol:15
-139: [19:11:59] Rep: 60 Mol:19
-139: [19:11:59] Rep: 60 Mol:23
-139: [19:11:59] Rep: 60 Mol:27
-139: [19:11:59] Rep: 60 Mol:31
-139: [19:12:00] Rep: 60 Mol:1
-139: [19:12:00] Rep: 60 Mol:5
-139: [19:12:00] Rep: 60 Mol:9
-139: [19:12:00] Rep: 60 Mol:13
-139: [19:12:00] Rep: 60 Mol:17
-139: [19:12:00] Rep: 60 Mol:21
-139: [19:12:00] Rep: 60 Mol:25
-139: [19:12:00] Rep: 60 Mol:29
-139: [19:12:01] Rep: 40 Mol:2
-139: [19:12:01] Rep: 40 Mol:6
-139: [19:12:01] Rep: 40 Mol:10
-139: [19:12:01] Rep: 40 Mol:14
-139: [19:12:01] Rep: 40 Mol:18
-139: [19:12:01] Rep: 40 Mol:22
-139: [19:12:01] Rep: 40 Mol:26
-139: [19:12:01] Rep: 40 Mol:30
-139: [19:12:01] Rep: 60 Mol:0
-139: [19:12:01] Rep: 60 Mol:4
-139: [19:12:01] Rep: 60 Mol:8
-139: [19:12:01] Rep: 60 Mol:12
-139: [19:12:01] Rep: 60 Mol:16
-139: [19:12:01] Rep: 60 Mol:20
-139: [19:12:01] Rep: 60 Mol:24
-139: [19:12:01] Rep: 60 Mol:28
-139: [19:12:01] Rep: 80 Mol:3
-139: [19:12:01] Rep: 80 Mol:7
-139: [19:12:01] Rep: 80 Mol:11
-139: [19:12:01] Rep: 80 Mol:15
-139: [19:12:01] Rep: 80 Mol:19
-139: [19:12:01] Rep: 80 Mol:23
-139: [19:12:01] Rep: 80 Mol:27
-139: [19:12:01] Rep: 80 Mol:31
-141: [19:12:03] Rep: 100 Mol:1
-141: [19:12:03] Rep: 100 Mol:5
-141: [19:12:03] Rep: 100 Mol:9
-141: [19:12:03] Rep: 100 Mol:13
-141: [19:12:03] Rep: 100 Mol:17
-141: [19:12:03] Rep: 100 Mol:21
-141: [19:12:03] Rep: 100 Mol:25
-141: [19:12:03] Rep: 100 Mol:29
-141: [19:12:03] Rep: 100 Mol:0
-141: [19:12:03] Rep: 100 Mol:4
-141: [19:12:03] Rep: 100 Mol:8
-141: [19:12:03] Rep: 100 Mol:12
-141: [19:12:03] Rep: 100 Mol:16
-141: [19:12:03] Rep: 100 Mol:20
-141: [19:12:03] Rep: 100 Mol:24
-141: [19:12:03] Rep: 100 Mol:28
-139: [19:12:04] Rep: 80 Mol:0
-139: [19:12:04] Rep: 80 Mol:4
-139: [19:12:04] Rep: 80 Mol:8
-139: [19:12:04] Rep: 80 Mol:12
-139: [19:12:04] Rep: 80 Mol:16
-139: [19:12:04] Rep: 80 Mol:20
-139: [19:12:04] Rep: 80 Mol:24
-139: [19:12:04] Rep: 80 Mol:28
-139: [19:12:05] Rep: 80 Mol:1
-139: [19:12:05] Rep: 80 Mol:5
-139: [19:12:05] Rep: 80 Mol:9
-139: [19:12:05] Rep: 80 Mol:13
-139: [19:12:05] Rep: 80 Mol:17
-139: [19:12:05] Rep: 80 Mol:21
-139: [19:12:05] Rep: 80 Mol:25
-139: [19:12:05] Rep: 80 Mol:29
-139: [19:12:05] Rep: 60 Mol:2
-139: [19:12:05] Rep: 60 Mol:6
-139: [19:12:05] Rep: 60 Mol:10
-139: [19:12:05] Rep: 60 Mol:14
-139: [19:12:05] Rep: 60 Mol:18
-139: [19:12:05] Rep: 60 Mol:22
-139: [19:12:06] Rep: 60 Mol:26
-139: [19:12:06] Rep: 60 Mol:30
-141: [19:12:07] Rep: 100 Mol:2
-141: [19:12:07] Rep: 100 Mol:6
-141: [19:12:07] Rep: 100 Mol:10
-141: [19:12:07] Rep: 100 Mol:14
-141: [19:12:07] Rep: 100 Mol:18
-141: [19:12:07] Rep: 100 Mol:22
-141: [19:12:07] Rep: 100 Mol:26
-141: [19:12:07] Rep: 100 Mol:30
-139: [19:12:10] Rep: 80 Mol:2
-139: [19:12:10] Rep: 80 Mol:6
-139: [19:12:10] Rep: 80 Mol:10
-139: [19:12:10] Rep: 80 Mol:14
-139: [19:12:10] Rep: 80 Mol:18
-139: [19:12:10] Rep: 80 Mol:22
-139: [19:12:10] Rep: 80 Mol:26
-139: [19:12:10] Rep: 80 Mol:30
-139: [19:12:13]   done
-139: [19:12:13] -------------------------------------
-139: [19:12:13]     Test MMFF multithreading2
-141: [19:12:16]   done
-141: [19:12:16] -------------------------------------
-141: [19:12:16]     Test UFF multithreading2
-144: [19:11:46] 	---------------------------------
-144: [19:11:46] 	 test3 
+139: [02:01:13]   done
+139: [02:01:13] -------------------------------------
+139: [02:01:13]     Testing github 162: Incorrect SMILES after MMFF parameterization .
+139: [02:01:13]   done
+139: [02:01:13] -------------------------------------
+139: [02:01:13]     Testing github 224: crash during MMFF parameterization .
+139: [02:01:13]   done
+139: [02:01:13] -------------------------------------
+139: [02:01:13]     Testing github6728: crash due to missing stretch-bend params.
+141/230 Test #139: testMMFFForceFieldHelpers ..............   Passed   22.42 sec
+test 145
+        Start 145: distGeomHelpersCatch
+
+145: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/distGeomHelpersCatch
+145: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers
+145: Test timeout computed to be: 1500
+145: Randomness seeded to: 1045372603
+145: [02:01:14] [C:1][NH:2]!@;-[C:3](=[NH2:4])[NH2]: 100 101 102 104, [(1 0), (-1 100), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [NH2][C:1](=[NH2])[NH:2]!@;-[CH2:3][C:4]: 102 101 100 99, [(1 0), (1 0), (1 2.5), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [OX2:1][CX4:2]!@;-[CX4:3][N:4]: 32 31 30 33, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [OX2:1][CX4:2]!@;-[CX4:3][N:4]: 48 46 45 49, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 36 37 38 39, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 37 38 39 40, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 38 39 40 41, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 97 98 99 100, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 98 99 100 101, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 0 1 2 3, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 1 2 4 5, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 20 22 23 24, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 22 23 25 26, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 34 36 37 38, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 66 67 68 69, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 84 85 86 87, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 96 97 98 99, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][CX4H2:2]!@;-[CX3:3]=[O:4]: 85 86 87 88, [(1 -1), (1 -0.5), (1 -0.2), (1 -0.3), (1 0), (1 -0.3)] 
+145: [02:01:14] [cH1:1][c:2]([cH1])!@;-[CX4H2:3][CX4:4]: 70 69 68 67, [(1 0), (1 3.6), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [*:1][X3,X2:2]=[X3,X2:3][*:4]: 101 102 104 220, [(1 0), (-1 100), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H0;r:3][CX4H1:4]: 15 13 12 8, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H0;r:3][CX4H1:4]: 22 20 19 15, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H0;r:3][CX4H1:4]: 67 75 77 81, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 4 62 61 60, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 8 6 5 4, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 30 28 27 22, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 36 34 33 30, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 45 43 42 36, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 81 82 84 85, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 93 94 96 97, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 97 105 107 52, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 90 92 93 94, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 6 5 4 117, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 28 27 22 133, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 34 33 30 144, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 43 42 36 149, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 62 61 60 181, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 82 84 85 202, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 94 96 97 210, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 105 107 52 171, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 91 90 92 93, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 43 45 49 50, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 52 50 49 45, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 60 64 66 67, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 68 67 66 64, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 
+145: [02:01:14] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 95 94 93 92, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [OX2:1][CX4;r{9-}:2]@;-[CX4;r{9-}:3][N:4]: 51 50 52 107, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [OX2:1][CX4;r{9-}:2]@;-[CX4;r{9-}:3][N:4]: 65 64 60 61, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 50 52 53 54, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 58 59 60 61, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 5 4 62 63, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 27 22 20 21, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 33 30 28 29, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 42 36 34 35, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 49 45 43 44, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 66 67 75 76, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 84 85 90 91, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 96 97 105 106, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
+145: -----------
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 2 1 10 9, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 14 12 11 9, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 4 3 2 1, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 16 15 14 12, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 1 10 9 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 12 11 9 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 5 4 3 2, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 17 16 15 14, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 0 1 2 3, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 13 12 14 15, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 4 6 7 8, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 6 7 8 9, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 7 8 9 10, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 4 6 16 17, [(1 0), (1 0), (-1 1), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 7 6 4 5, [(1 0), (1 0), (-1 1), (1 0), (1 0), (1 0)] 
+145: -----------
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 13 14 16 3, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 10 12 13 14, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 11 10 12 13, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 15 14 13 12, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 
+145: -----------
+145: -----------
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 2 1 15 14, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 2 3 5 6, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 10 8 7 6, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 10 11 13 14, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 19 17 16 14, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 19 20 22 6, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 1 15 14 31, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 3 5 6 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 8 7 6 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 11 13 14 31, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 17 16 14 31, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 20 22 6 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 0 1 2 3, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 4 3 2 1, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 9 8 10 11, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 12 11 10 8, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 18 17 19 20, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 21 20 19 17, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
+145: [02:01:14] UFFTYPER: Unrecognized atom type: Pt5+2 (1)
+145: [02:01:14] UFFTYPER: Unrecognized charge state for atom: 1
+145: [02:01:14] UFFTYPER: Unrecognized charge state for atom: 1
+145: [02:01:14] UFFTYPER: Unrecognized charge state for atom: 1
+141: [02:01:14]   done
+141: [02:01:14] -------------------------------------
+141: [02:01:14]     Test UFF multithreading3
+145: [02:01:15] UFFTYPER: Unrecognized charge state for atom: 5
+145: [02:01:15] UFFTYPER: Unrecognized charge state for atom: 5
+145: [02:01:15] UFFTYPER: Unrecognized charge state for atom: 5
+145: [02:01:15] UFFTYPER: Unrecognized charge state for atom: 6
+145: [02:01:15] UFFTYPER: Unrecognized charge state for atom: 6
+145: [02:01:15] UFFTYPER: Unrecognized charge state for atom: 6
+145: [02:01:19] UFFTYPER: Warning: hybridization set to SP3 for atom 6
+141: [02:01:19]   done
+141: [02:01:19] -------------------------------------
+141: [02:01:19]     Testing GitHubIssue62.
+144: [02:01:11] 	---------------------------------
+144: [02:01:11] 	 test3 
 144: 
-144: [19:11:47] 	---------------------------------
-144: [19:11:47] 	 test4 
+144: [02:01:11] 	---------------------------------
+144: [02:01:11] 	 test4 
 144: 
-144: [19:11:48] 	---------------------------------
-144: [19:11:48] 	 test5 
+144: [02:01:11] 	---------------------------------
+144: [02:01:11] 	 test5 
 144: 
-144: [19:12:29] 	---------------------------------
-144: [19:12:29] 	 test6 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test6 
 144: 
-144: [19:12:29] 	---------------------------------
-144: [19:12:29] 	 test15Dists 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test15Dists 
 144: 
-144: [19:12:29] 	---------------------------------
-144: [19:12:29] 	 test Issue 215 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test Issue 215 
 144: 
-144: [19:12:29] 	---------------------------------
-144: [19:12:29] 	 testMultipleConfs 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testMultipleConfs 
 144: 
-144: [19:12:31] 	---------------------------------
-144: [19:12:31] 	 testMultipleConfsExpTors 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testMultipleConfsExpTors 
 144: 
-144: [19:12:31] 	---------------------------------
-144: [19:12:31] 	 testIssue227 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testIssue227 
 144: 
-144: [19:12:32] 	---------------------------------
-144: [19:12:32] 	 testIssue236 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testIssue236 
 144: 
-144: [19:12:32] 	---------------------------------
-144: [19:12:32] 	 testOrdering 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testOrdering 
 144: 
-144: [19:12:32] 	---------------------------------
-144: [19:12:32] 	 testIssue244 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testIssue244 
 144: 
-144: [19:12:32] 	---------------------------------
-144: [19:12:32] 	 testIssue251 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testIssue251 
 144: 
-144: [19:12:32] 	---------------------------------
-144: [19:12:32] 	 testIssue276 
-144: [19:12:32] 	---------------------------------
-144: [19:12:32] 	 testIssue284 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testIssue276 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testIssue284 
 144: 
-144: [19:12:32] 	---------------------------------
-144: [19:12:32] 	 testIssue285 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testIssue285 
 144: 
-144: [19:12:32] 	---------------------------------
-144: [19:12:32] 	 testIssue355 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testIssue355 
 144: 
-144: [19:12:32] 	---------------------------------
-144: [19:12:32] 	 testRandomCoords 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 testRandomCoords 
 144: 
-144: [19:12:33] 	---------------------------------
-144: [19:12:33] 	 test sf.net issue 1989539 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test sf.net issue 1989539 
 144: 
-144: [19:12:33] 	---------------------------------
-144: [19:12:33] 	 test sf.net issue 2091864 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test sf.net issue 2091864 
 144: 
-144: [19:12:33] 	---------------------------------
-144: [19:12:33] 	 test constrained embedding 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test constrained embedding 
 144: 
-144: [19:12:33] ssd: 0.0752641
-144: [19:12:33] ssd: 0.0659363
-139: [19:12:33]   done
-139: [19:12:33] -------------------------------------
-139: [19:12:33]     Test MMFF multithreading3
-144: [19:12:33] 	---------------------------------
-144: [19:12:33] 	 test sf.net issue 2091974 
+144: [02:01:19] ssd: 0.0752641
+141: [02:01:19] beta-lactam 39.6387
+141: [02:01:19] cyclopropanone 174.698
+141: [02:01:19] aziridine 337.986
+141: [02:01:19] aziridinone 115.248
+144: [02:01:19] ssd: 0.0659363
+141: [02:01:19] isobutene 2.48217
+141: [02:01:19] acetone 1.91788
+141: [02:01:19] cyclopentanone 10.1648
+141: [02:01:19] cyclopropene 99.4921
+141: [02:01:19] cyclobutene 41.0156
+141: [02:01:19] cyclopropane 267.236
+141: [02:01:19] gamma-lactam 15.7471
+145: [02:01:19] UFFTYPER: Warning: hybridization set to SP3 for atom 6
+141: [02:01:20] trans-2,3-diphenylcyclopropan-1-one 203.398
+145: [02:01:20] UFFTYPER: Warning: hybridization set to SP3 for atom 6
+141: [02:01:20] cis-2,3-diphenylcyclopropan-1-one 206.852
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test sf.net issue 2091974 
 144: 
-144: [19:12:33] 	---------------------------------
-144: [19:12:33] 	 test sf.net issue 2835784 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test sf.net issue 2835784 
 144: 
-144: [19:12:34] 	---------------------------------
-144: [19:12:34] 	 test sf.net issue 3019283 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test sf.net issue 3019283 
 144: 
-144: [19:12:34] 	---------------------------------
-144: [19:12:34] 	 test sf.net issue 3238580 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test sf.net issue 3238580 
 144: 
-144: [19:12:34] 	---------------------------------
-144: [19:12:34] 	 test sf.net issue 3483968 
+144: [02:01:19] 	---------------------------------
+144: [02:01:19] 	 test sf.net issue 3483968 
 144: 
-144: [19:12:37] 	---------------------------------
-144: [19:12:37] 	 test github issue 55 
+144: [02:01:20] 	---------------------------------
+144: [02:01:20] 	 test github issue 55 
 144: 
-144: [19:12:37] 	---------------------------------
-144: [19:12:37] 	 test1 
+144: [02:01:20] 	---------------------------------
+144: [02:01:20] 	 test1 
 144: 
-144: [19:12:37] 	---------------------------------
-144: [19:12:37] 	 test multi-threading 
+144: [02:01:20] 	---------------------------------
+144: [02:01:20] 	 test multi-threading 
 144: 
 144: building molecules
 144: generating reference data
-141: [19:12:39]   done
-141: [19:12:39] -------------------------------------
-141: [19:12:39]     Test UFF multithreading3
-139: [19:12:52]   done
-139: [19:12:52] -------------------------------------
-139: [19:12:52]     Testing github 162: Incorrect SMILES after MMFF parameterization .
-139: [19:12:52]   done
-139: [19:12:52] -------------------------------------
-139: [19:12:52]     Testing github 224: crash during MMFF parameterization .
-139: [19:12:52]   done
-139: [19:12:52] -------------------------------------
-139: [19:12:52]     Testing github6728: crash due to missing stretch-bend params.
-140/230 Test #139: testMMFFForceFieldHelpers ..............   Passed   76.50 sec
-test 145
-        Start 145: distGeomHelpersCatch
-
-145: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/distGeomHelpersCatch
-145: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers
-145: Test timeout computed to be: 1500
-145: Randomness seeded to: 2452617749
-145: [19:12:53] [C:1][NH:2]!@;-[C:3](=[NH2:4])[NH2]: 100 101 102 104, [(1 0), (-1 100), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [NH2][C:1](=[NH2])[NH:2]!@;-[CH2:3][C:4]: 102 101 100 99, [(1 0), (1 0), (1 2.5), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [OX2:1][CX4:2]!@;-[CX4:3][N:4]: 32 31 30 33, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [OX2:1][CX4:2]!@;-[CX4:3][N:4]: 48 46 45 49, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 36 37 38 39, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 37 38 39 40, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 38 39 40 41, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 97 98 99 100, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 98 99 100 101, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 0 1 2 3, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 1 2 4 5, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 20 22 23 24, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 22 23 25 26, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 34 36 37 38, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 66 67 68 69, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 84 85 86 87, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 96 97 98 99, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][CX4H2:2]!@;-[CX3:3]=[O:4]: 85 86 87 88, [(1 -1), (1 -0.5), (1 -0.2), (1 -0.3), (1 0), (1 -0.3)] 
-145: [19:12:53] [cH1:1][c:2]([cH1])!@;-[CX4H2:3][CX4:4]: 70 69 68 67, [(1 0), (1 3.6), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [*:1][X3,X2:2]=[X3,X2:3][*:4]: 101 102 104 220, [(1 0), (-1 100), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H0;r:3][CX4H1:4]: 15 13 12 8, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H0;r:3][CX4H1:4]: 22 20 19 15, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H0;r:3][CX4H1:4]: 67 75 77 81, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 4 62 61 60, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 8 6 5 4, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 30 28 27 22, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 36 34 33 30, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 45 43 42 36, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 81 82 84 85, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 93 94 96 97, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 97 105 107 52, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 90 92 93 94, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 6 5 4 117, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 28 27 22 133, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 34 33 30 144, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 43 42 36 149, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 62 61 60 181, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 82 84 85 202, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 94 96 97 210, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:53] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 105 107 52 171, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 91 90 92 93, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 43 45 49 50, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 52 50 49 45, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 60 64 66 67, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 68 67 66 64, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 
-145: [19:12:54] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 95 94 93 92, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [OX2:1][CX4;r{9-}:2]@;-[CX4;r{9-}:3][N:4]: 51 50 52 107, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [OX2:1][CX4;r{9-}:2]@;-[CX4;r{9-}:3][N:4]: 65 64 60 61, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 50 52 53 54, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 58 59 60 61, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 5 4 62 63, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 27 22 20 21, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 33 30 28 29, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 42 36 34 35, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 49 45 43 44, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 66 67 75 76, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 84 85 90 91, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 96 97 105 106, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 
-145: -----------
-145: [19:12:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 2 1 10 9, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 14 12 11 9, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 4 3 2 1, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 16 15 14 12, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 1 10 9 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 12 11 9 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 5 4 3 2, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 17 16 15 14, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 0 1 2 3, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 13 12 14 15, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 4 6 7 8, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 6 7 8 9, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 7 8 9 10, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 4 6 16 17, [(1 0), (1 0), (-1 1), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 7 6 4 5, [(1 0), (1 0), (-1 1), (1 0), (1 0), (1 0)] 
-145: -----------
-145: [19:12:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 13 14 16 3, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 10 12 13 14, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 11 10 12 13, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 15 14 13 12, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 
-145: -----------
-145: -----------
-145: [19:12:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 2 1 15 14, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 2 3 5 6, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 10 8 7 6, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 10 11 13 14, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 19 17 16 14, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 19 20 22 6, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 1 15 14 31, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 3 5 6 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 8 7 6 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 11 13 14 31, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 17 16 14 31, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 20 22 6 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 0 1 2 3, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 4 3 2 1, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 9 8 10 11, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 12 11 10 8, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 18 17 19 20, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 21 20 19 17, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 
-145: [19:12:56] UFFTYPER: Unrecognized atom type: Pt5+2 (1)
-145: [19:12:56] UFFTYPER: Unrecognized charge state for atom: 1
-145: [19:12:56] UFFTYPER: Unrecognized charge state for atom: 1
-145: [19:12:57] UFFTYPER: Unrecognized charge state for atom: 1
-145: [19:12:59] UFFTYPER: Unrecognized charge state for atom: 5
-145: [19:13:00] UFFTYPER: Unrecognized charge state for atom: 5
-145: [19:13:00] UFFTYPER: Unrecognized charge state for atom: 5
-141: [19:13:01]   done
-141: [19:13:01] -------------------------------------
-141: [19:13:01]     Testing GitHubIssue62.
-141: [19:13:01] beta-lactam 39.6387
-141: [19:13:01] cyclopropanone 174.698
-141: [19:13:01] aziridine 337.986
-141: [19:13:01] aziridinone 115.248
-141: [19:13:01] isobutene 2.48217
-141: [19:13:01] acetone 1.91788
-141: [19:13:01] cyclopentanone 10.1648
-141: [19:13:01] cyclopropene 99.4921
-141: [19:13:01] cyclobutene 41.0156
-141: [19:13:01] cyclopropane 267.236
-141: [19:13:01] gamma-lactam 15.7471
-141: [19:13:02] trans-2,3-diphenylcyclopropan-1-one 203.398
-145: [19:13:02] UFFTYPER: Unrecognized charge state for atom: 6
-145: [19:13:02] UFFTYPER: Unrecognized charge state for atom: 6
-145: [19:13:03] UFFTYPER: Unrecognized charge state for atom: 6
-141: [19:13:03] cis-2,3-diphenylcyclopropan-1-one 206.852
-141: [19:13:03] 2,3-diphenylcyclopropa-2-en-1-one 20.0443
-141: [19:13:03] cyclopropylidencyclobutane 218.879
-141: [19:13:04] diphenylmethylidencyclobutane 79.6139
-141: [19:13:04]   done
-141: [19:13:04] -------------------------------------
-141: [19:13:04]     Test Github Issue 613: UFF Atom type not properly assigned to lanthanides.
-141: [19:13:04]   done
-141: [19:13:04] -------------------------------------
-141: [19:13:04]     Test square planar complexes
-141: [19:13:04]   done
-141: [19:13:04] -------------------------------------
-141: [19:13:04]     Test octahedral complexes
-141: [19:13:04]   done
-141/230 Test #141: testUFFForceFieldHelpers ...............   Passed   85.30 sec
+141: [02:01:20] 2,3-diphenylcyclopropa-2-en-1-one 20.0443
+141: [02:01:20] cyclopropylidencyclobutane 218.879
+141: [02:01:20] diphenylmethylidencyclobutane 79.6139
+141: [02:01:20]   done
+141: [02:01:20] -------------------------------------
+141: [02:01:20]     Test Github Issue 613: UFF Atom type not properly assigned to lanthanides.
+141: [02:01:20]   done
+141: [02:01:20] -------------------------------------
+141: [02:01:20]     Test square planar complexes
+141: [02:01:20]   done
+141: [02:01:20] -------------------------------------
+141: [02:01:20]     Test octahedral complexes
+141: [02:01:20]   done
+142/230 Test #141: testUFFForceFieldHelpers ...............   Passed   21.83 sec
 test 146
         Start 146: pyDistGeomHelpers
 
 146: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py"
 146: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap
 146: Test timeout computed to be: 1500
-142/230 Test #146: pyDistGeomHelpers ......................***Exception: SegFault  4.77 sec
+145: [02:01:20] UFFTYPER: Warning: hybridization set to SP3 for atom 11
+145: [02:01:20] UFFTYPER: Warning: hybridization set to SP3 for atom 11
+145: [02:01:20] UFFTYPER: Warning: hybridization set to SP3 for atom 11
+143/230 Test #146: pyDistGeomHelpers ......................***Exception: SegFault  0.84 sec
 
 test 147
         Start 147: testMolAlign
@@ -33691,7 +33741,7 @@
 147: 	 testIssue241 
 147: 
 147: ***********************************************************
-143/230 Test #147: testMolAlign ...........................   Passed    2.17 sec
+144/230 Test #147: testMolAlign ...........................   Passed    0.40 sec
 test 148
         Start 148: testO3AAlign
 
@@ -33699,12 +33749,6 @@
 148: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign
 148: Test timeout computed to be: 1500
 144: validating reference data
-145: [19:13:16] UFFTYPER: Warning: hybridization set to SP3 for atom 6
-145: [19:13:18] UFFTYPER: Warning: hybridization set to SP3 for atom 6
-145: [19:13:19] UFFTYPER: Warning: hybridization set to SP3 for atom 6
-145: [19:13:20] UFFTYPER: Warning: hybridization set to SP3 for atom 11
-145: [19:13:20] UFFTYPER: Warning: hybridization set to SP3 for atom 11
-145: [19:13:20] UFFTYPER: Warning: hybridization set to SP3 for atom 11
 144: processing
 144:  launch :0
 144:  launch :1
@@ -33745,36 +33789,48 @@
 148:  launch :1
 148:  launch :2
 148:  launch :3
-31: [19:17:45] Finished
-31: [19:17:45] -------------------------------------
-31: [19:17:45]     Test github1843: RWMol.clear() should not destroy ring pointer.
-31: [19:17:45] Finished
-31: [19:17:45] -------------------------------------
-31: [19:17:45]     Test Github 6370: non-physical radical counts being preserved
-31: [19:17:46] Finished
-144/230 Test  #31: graphmolTest1 ..........................   Passed  869.74 sec
+148: 	---------------------------------
+148: 	 test O3A multithreading bug
+148: 
+148: 	---------------------------------
+148: 	 testCrippenO3A multithreading
+148: 
+148: generating reference data
+148: processing
+148:  launch :0
+148:  launch :1
+148:  launch :2
+148:  launch :3
+148: 	---------------------------------
+148: 	 test getO3AForProbeConfs
+148: 
+148: ***********************************************************
+145/230 Test #148: testO3AAlign ...........................   Passed  179.10 sec
 test 149
         Start 149: molAlignCatchTest
 
 149: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/molAlignCatchTest
 149: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign
 149: Test timeout computed to be: 1500
-149: Randomness seeded to: 1770986240
-149: 604626994
-149: 541292535
-149: 27300485554
-149: 9662680837
+149: Randomness seeded to: 1135079737
+149: 113715511
+149: 128884989
+145: [02:04:24] UFFTYPER: Unrecognized atom type: S_6+6 (0)
+145: [02:04:24] UFFTYPER: Warning: hybridization set to SP3 for atom 0
+145: [02:04:24] UFFTYPER: Unrecognized charge state for atom: 0
+149: 5381724150
+149: 2268960608
 149: ===============================================================================
 149: All tests passed (73 assertions in 3 test cases)
 149: 
-145/230 Test #149: molAlignCatchTest ......................   Passed   39.36 sec
+146/230 Test #149: molAlignCatchTest ......................   Passed    8.28 sec
 test 150
         Start 150: pyMolAlign
 
 150: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolAlign/Wrap/testMolAlign.py"
 150: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap
 150: Test timeout computed to be: 1500
-146/230 Test #150: pyMolAlign .............................***Exception: SegFault  3.60 sec
+147/230 Test #150: pyMolAlign .............................***Exception: SegFault  0.59 sec
 
 test 151
         Start 151: testFeatures
@@ -33782,58 +33838,58 @@
 151: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/testFeatures
 151: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures
 151: Test timeout computed to be: 1500
-151: [19:18:29] -------------------------------------
-151: [19:18:29] AtomType parser testing.
-151: [19:18:29] SMARTS Parse Error: syntax error while parsing: [$([!$([NH0])_100;N,O,$([S])_101,$([N,O)_102])_103]
-151: [19:18:29] SMARTS Parse Error: Failed parsing SMARTS '[$([!$([NH0])_100;N,O,$([S])_101,$([N,O)_102])_103]' for input: '[$([!$([NH0]);N,O,$([S]),$([N,O)])]'
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] FeatureDefinition parser testing.
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Test pulling feat defs from a string.
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] FeatureDef functionality testing.
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] FeatureFactory testing.
-151: [19:18:29] 1
-151: [19:18:29] 2
-151: [19:18:29] 3
-151: [19:18:29] 4
-151: [19:18:29] 5
-151: [19:18:29] 6
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Feature Location testing.
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Test building a FeatureFactory from a file
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Testing Issue 224.
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Testing Issue 225.
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Test Issue346
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Test Issue347
-151: [19:18:29]   done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Testing Issue 348.
-151: [19:18:29] SMARTS Parse Error: syntax error while parsing: [C[C]
-151: [19:18:29] SMARTS Parse Error: Failed parsing SMARTS '[C[C]' for input: '[C[C]'
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Testing Nested AtomType definitions.
+151: [02:04:29] -------------------------------------
+151: [02:04:29] AtomType parser testing.
+151: [02:04:29] SMARTS Parse Error: syntax error while parsing: [$([!$([NH0])_100;N,O,$([S])_101,$([N,O)_102])_103]
+151: [02:04:29] SMARTS Parse Error: Failed parsing SMARTS '[$([!$([NH0])_100;N,O,$([S])_101,$([N,O)_102])_103]' for input: '[$([!$([NH0]);N,O,$([S]),$([N,O)])]'
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] FeatureDefinition parser testing.
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Test pulling feat defs from a string.
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] FeatureDef functionality testing.
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] FeatureFactory testing.
+151: [02:04:29] 1
+151: [02:04:29] 2
+151: [02:04:29] 3
+151: [02:04:29] 4
+151: [02:04:29] 5
+151: [02:04:29] 6
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Feature Location testing.
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Test building a FeatureFactory from a file
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Testing Issue 224.
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Testing Issue 225.
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Test Issue346
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Test Issue347
+151: [02:04:29]   done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Testing Issue 348.
+151: [02:04:29] SMARTS Parse Error: syntax error while parsing: [C[C]
+151: [02:04:29] SMARTS Parse Error: Failed parsing SMARTS '[C[C]' for input: '[C[C]'
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Testing Nested AtomType definitions.
 151: [$([$([$([C;!$(C=[O,N,P,S]);!$(C#N)]),c]);R])]
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Testing Github Issue #252: crash when calling getPos() with no conformer.
-151: [19:18:29]      expect a precondition failure message below
-151: [19:18:29] 
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Testing Github Issue #252: crash when calling getPos() with no conformer.
+151: [02:04:29]      expect a precondition failure message below
+151: [02:04:29] 
 151: 
 151: ****
 151: Pre-condition Violation
@@ -33846,25 +33902,25 @@
 151:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
 151:  2# RDKit::MolChemicalFeature::getPos(int) const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolChemicalFeatures.so.1
 151:  3# RDKit::MolChemicalFeature::getPos() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolChemicalFeatures.so.1
-151:  4# 0x00A63646 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/testFeatures
-151:  5# 0x00A59086 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/testFeatures
-151:  6# 0xF74214FA in /lib/arm-linux-gnueabihf/libc.so.6
+151:  4# 0x00455646 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/testFeatures
+151:  5# 0x0044B086 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/testFeatures
+151:  6# 0xB6A9A4FA in /lib/arm-linux-gnueabihf/libc.so.6
 151:  7# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 151: ----------
 151: ****
 151: 
-151: [19:18:29]    Done
-151: [19:18:29] -------------------------------------
-151: [19:18:29] Testing github 2077: add confId argument to MolChemicalFeatureFactor::getFeaturesForMol()
-151: [19:18:29]   done
-147/230 Test #151: testFeatures ...........................   Passed    0.25 sec
+151: [02:04:29]    Done
+151: [02:04:29] -------------------------------------
+151: [02:04:29] Testing github 2077: add confId argument to MolChemicalFeatureFactor::getFeaturesForMol()
+151: [02:04:29]   done
+148/230 Test #151: testFeatures ...........................   Passed    0.17 sec
 test 152
         Start 152: pyChemicalFeatures
 
 152: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py"
 152: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap
 152: Test timeout computed to be: 1500
-148/230 Test #152: pyChemicalFeatures .....................***Exception: SegFault  2.83 sec
+149/230 Test #152: pyChemicalFeatures .....................***Exception: SegFault  0.78 sec
 
 test 153
         Start 153: testShapeHelpers
@@ -33884,14 +33940,14 @@
 153: 	 testGithub4364 
 153: 
 153: ***********************************************************
-149/230 Test #153: testShapeHelpers .......................   Passed    0.79 sec
+150/230 Test #153: testShapeHelpers .......................   Passed    0.19 sec
 test 154
         Start 154: pyShapeHelpers
 
 154: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py"
 154: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap
 154: Test timeout computed to be: 1500
-150/230 Test #154: pyShapeHelpers .........................***Exception: SegFault  3.76 sec
+151/230 Test #154: pyShapeHelpers .........................***Exception: SegFault  1.34 sec
 
 test 155
         Start 155: testMolCatalog
@@ -33899,14 +33955,14 @@
 155: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/testMolCatalog
 155: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog
 155: Test timeout computed to be: 1500
-151/230 Test #155: testMolCatalog .........................   Passed    0.35 sec
+152/230 Test #155: testMolCatalog .........................   Passed    0.10 sec
 test 156
         Start 156: pyMolCatalog
 
 156: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolCatalog/Wrap/rough_test.py"
 156: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap
 156: Test timeout computed to be: 1500
-152/230 Test #156: pyMolCatalog ...........................***Exception: SegFault  5.70 sec
+153/230 Test #156: pyMolCatalog ...........................***Exception: SegFault  1.43 sec
 
 test 157
         Start 157: moldraw2DTest1
@@ -33946,18 +34002,6 @@
 157:  launch :1
 157:  launch :2
 157:  launch :3
-148: 	---------------------------------
-148: 	 test O3A multithreading bug
-148: 
-148: 	---------------------------------
-148: 	 testCrippenO3A multithreading
-148: 
-148: generating reference data
-148: processing
-148:  launch :0
-148:  launch :1
-148:  launch :2
-148:  launch :3
 157:  Done
 157:  ----------------- Test Github #781: Rendering single-atom molecules
 157:  Done
@@ -34077,14 +34121,14 @@
 157:  Done
 157:  ----------------- Test AND queries
 157:  Done
-153/230 Test #157: moldraw2DTest1 .........................   Passed  143.68 sec
+154/230 Test #157: moldraw2DTest1 .........................   Passed   40.62 sec
 test 158
         Start 158: moldraw2DTestCatch
 
 158: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
 158: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D
 158: Test timeout computed to be: 1500
-158: Randomness seeded to: 3098776772
+158: Randomness seeded to: 3739208952
 158: file testAtomTags_3.svg gave hash 1931256064U not the expected 2244078420U
 158: file contourMol_1.svg gave hash 2850377565U not the expected 2604538953U
 158: file contourMol_2.svg gave hash 3420658785U not the expected 572669511U
@@ -34096,46 +34140,46 @@
 158: file testGithub3226_3.png gave hash 2178685661U not the expected 2282880418U
 158: file testPNGMetadata_1.png gave hash 1114763408U not the expected 2423299691U
 158: file testPNGMetadata_2.png gave hash 831235773U not the expected 2803353117U
-158: [19:21:10] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
-158: [19:21:10] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
+158: [02:05:15] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
+158: [02:05:15] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
 158: file testHandDrawn-1.svg gave hash 2072486955U not the expected 2253418236U
-158: [19:21:10] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
-158: [19:21:10] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
+158: [02:05:16] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
+158: [02:05:16] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
 158: file testHandDrawn-1.png gave hash 4292731558U not the expected 698316547U
-158: [19:21:11] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
-158: [19:21:11] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
+158: [02:05:16] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
+158: [02:05:16] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
 158: file testHandDrawn-2.svg gave hash 1534109833U not the expected 4132716144U
-158: [19:21:11] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
-158: [19:21:11] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
+158: [02:05:16] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
+158: [02:05:16] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
 158: file testHandDrawn-2.png gave hash 2019437775U not the expected 1605553248U
-158: [19:21:12] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
-158: [19:21:12] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
+158: [02:05:16] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
+158: [02:05:16] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
 158: file testHandDrawn-3.svg gave hash 2359787964U not the expected 4199337510U
-158: [19:21:12] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
-158: [19:21:12] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
+158: [02:05:16] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
+158: [02:05:16] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
 158: file testHandDrawn-3.png gave hash 2770454011U not the expected 2881952238U
-158: [19:21:12] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
-158: [19:21:12] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
+158: [02:05:16] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
+158: [02:05:16] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
 158: file testHandDrawn-4.svg gave hash 1880974760U not the expected 4197407865U
-158: [19:21:12] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
-158: [19:21:12] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
+158: [02:05:16] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
+158: [02:05:16] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
 158: file testHandDrawn-4.png gave hash 4013133897U not the expected 3431655453U
 158: file testHandDrawn-5a.svg gave hash 1022103754U not the expected 3628607349U
-158: [19:21:24] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
-158: [19:21:24] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
+158: [02:05:21] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
+158: [02:05:21] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
 158: file testHandDrawn-5b.svg gave hash 541506982U not the expected 2522138089U
-158: [19:21:25] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
-158: [19:21:25] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
+158: [02:05:21] Font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/ComicNeue-Regular.ttf not found.
+158: [02:05:21] Falling back to original font file /build/reproducible-path/rdkit-202409.2/Data/Fonts/Telex-Regular.ttf.
 158: file testHandDrawn-5.png gave hash 227952865U not the expected 3439548169U
 158: file testBrackets-5a.svg gave hash 279553678U not the expected 3061667963U
 158: file testSGroupData-3a.svg gave hash 62481132U not the expected 2405789536U
 158: file testSGroupData-3a.svg gave hash 62481132U not the expected 2405789536U
 158: file testPositionVariation-1b.svg gave hash 3055422087U not the expected 174339626U
-158: [19:21:27] unrecognized bond typefile testGithub2976.svg gave hash 2858811732U not the expected 2669316911U
+158: [02:05:23] unrecognized bond typefile testGithub2976.svg gave hash 2858811732U not the expected 2669316911U
 158: file testGithub4238_1.png gave hash 457161194U not the expected 3410617836U
 158: file testGithub4323_1.png gave hash 1351611338U not the expected 3723958844U
 158: file testGithub4323_3.png gave hash 1010250572U not the expected 2185913679U
-158: [19:21:30] FIELDDISP info not found for DAT SGroup which isn't associated with an atom. SGroup will not be rendered.
+158: [02:05:24] FIELDDISP info not found for DAT SGroup which isn't associated with an atom. SGroup will not be rendered.
 158: file testFlexiCanvas.2a.png gave hash 671825155U not the expected 3217758043U
 158: file testFlexiCanvas.2b.png gave hash 822043607U not the expected 4070063910U
 158: file testFlexiCanvas.3.svg gave hash 3867616289U not the expected 2819587550U
@@ -34156,7 +34200,7 @@
 158: file acs1996_5.svg gave hash 3624853279U not the expected 1680320774U
 158: file acs1996_8.svg gave hash 4110469272U not the expected 2477908768U
 158: file acs1996_9.svg gave hash 231896677U not the expected 3747924004U
-158: [19:21:38] ACS drawing mode works best with a flexiCanvas i.e. a drawer created with width and height of -1.  The scale will be fixed, and that may not look great with a pre-determined size.
+158: [02:05:27] ACS drawing mode works best with a flexiCanvas i.e. a drawer created with width and height of -1.  The scale will be fixed, and that may not look great with a pre-determined size.
 158: file bond_highlights_8.svg gave hash 682598716U not the expected 2956924065U
 158: file test_github6112.svg gave hash 3865338574U not the expected 3278777629U
 158: file test_github6200_1.svg gave hash 1975293465U not the expected 1044179149U
@@ -34175,29 +34219,15 @@
 158: file testWedgeNonSingleBonds-1.svg gave hash 2116685919U not the expected 865601717U
 158: file testWedgeNonSingleBonds-2.svg gave hash 1174395532U not the expected 2960559495U
 158: file testWedgeNonSingleBonds-3.svg gave hash 2542970771U not the expected 1428196589U
-5: [19:21:45] Finished: testMultipleTimes() 
-5: [19:21:45] 
-5: -----------------------------------------
-154/230 Test   #5: testConcurrentQueue ....................   Passed  1130.91 sec
-test 159
-        Start 159: moldraw2DRxnTest1
-
-159: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DRxnTest1
-159: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D
-159: Test timeout computed to be: 1500
 158: file testWedgeNonSingleBonds-4.svg gave hash 700876833U not the expected 3897680387U
 158: file testWedgeNonSingleBonds-5.svg gave hash 2012191155U not the expected 2183530217U
 158: file testWedgeNonSingleBonds-6.svg gave hash 2517061935U not the expected 238313010U
 158: file testWedgeNonSingleBonds-7.svg gave hash 157069219U not the expected 3641456570U
 158: file testWedgeNonSingleBonds-8.svg gave hash 3431784338U not the expected 3209701539U
-159:  ----------------- Test 1
 158: file testGithub_7739_1.svg gave hash 1477601334U not the expected 52079325U
-159: file rxn_test1_1.png gave hash 2385318368U not the expected 1556334749U
-159: file rxn_test1_2.png gave hash 2554855195U not the expected 1924084263U
 158: file testGithub_7739_3.svg gave hash 4066656179U not the expected 1126644226U
-159: file rxn_test1_3.png gave hash 2471407454U not the expected 1644921059U
 158: file testGithub_7739_4.svg gave hash 1029970961U not the expected 9844878U
-158: [19:21:47] 
+158: [02:05:29] 
 158: 
 158: ****
 158: Pre-condition Violation
@@ -34214,19 +34244,19 @@
 158:  5# RDKit::MolDraw2D_detail::DrawMol::extractAll(double) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolDraw2D.so.1
 158:  6# RDKit::MolDraw2D_detail::DrawMol::createDrawObjects() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolDraw2D.so.1
 158:  7# RDKit::MolDraw2D::drawMoleculeWithHighlights(RDKit::ROMol const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::map<int, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<int const, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> > > > > const&, std::map<int, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<int const, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> > > > > const&, std::map<int, double, std::less<int>, std::allocator<std::pair<int const, double> > > const&, std::map<int, int, std::less<int>, std::allocator<std::pair<int const, int> > > const&, int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolDraw2D.so.1
-158:  8# 0x00BC1C80 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158:  9# 0x00C558EC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 10# 0x00C55F58 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 11# 0x00C56288 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 12# 0x00C37AB8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 13# 0x00C37E8C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 14# 0x00BBD3B2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 15# 0xF70194FA in /lib/arm-linux-gnueabihf/libc.so.6
+158:  8# 0x00430C80 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158:  9# 0x004C48EC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 10# 0x004C4F58 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 11# 0x004C5288 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 12# 0x004A6AB8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 13# 0x004A6E8C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 14# 0x0042C3B2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 15# 0xB65D74FA in /lib/arm-linux-gnueabihf/libc.so.6
 158: 16# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 158: ----------
 158: ****
 158: 
-158: [19:21:47] 
+158: [02:05:29] 
 158: 
 158: ****
 158: Range Error
@@ -34243,19 +34273,19 @@
 158:  5# RDKit::MolDraw2D_detail::DrawMol::extractAll(double) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolDraw2D.so.1
 158:  6# RDKit::MolDraw2D_detail::DrawMol::createDrawObjects() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolDraw2D.so.1
 158:  7# RDKit::MolDraw2D::drawMoleculeWithHighlights(RDKit::ROMol const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::map<int, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<int const, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> > > > > const&, std::map<int, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<int const, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> > > > > const&, std::map<int, double, std::less<int>, std::allocator<std::pair<int const, double> > > const&, std::map<int, int, std::less<int>, std::allocator<std::pair<int const, int> > > const&, int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolDraw2D.so.1
-158:  8# 0x00BC1706 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158:  9# 0x00C558EC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 10# 0x00C55F58 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 11# 0x00C56288 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 12# 0x00C37AB8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 13# 0x00C37E8C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 14# 0x00BBD3B2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 15# 0xF70194FA in /lib/arm-linux-gnueabihf/libc.so.6
+158:  8# 0x00430706 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158:  9# 0x004C48EC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 10# 0x004C4F58 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 11# 0x004C5288 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 12# 0x004A6AB8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 13# 0x004A6E8C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 14# 0x0042C3B2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 15# 0xB65D74FA in /lib/arm-linux-gnueabihf/libc.so.6
 158: 16# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 158: ----------
 158: ****
 158: 
-158: [19:21:47] 
+158: [02:05:29] 
 158: 
 158: ****
 158: Range Error
@@ -34272,14 +34302,14 @@
 158:  5# RDKit::MolDraw2D_detail::DrawMol::extractAll(double) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolDraw2D.so.1
 158:  6# RDKit::MolDraw2D_detail::DrawMol::createDrawObjects() in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolDraw2D.so.1
 158:  7# RDKit::MolDraw2D::drawMoleculeWithHighlights(RDKit::ROMol const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::map<int, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<int const, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> > > > > const&, std::map<int, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> >, std::less<int>, std::allocator<std::pair<int const, std::vector<RDKit::DrawColour, std::allocator<RDKit::DrawColour> > > > > const&, std::map<int, double, std::less<int>, std::allocator<std::pair<int const, double> > > const&, std::map<int, int, std::less<int>, std::allocator<std::pair<int const, int> > > const&, int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitMolDraw2D.so.1
-158:  8# 0x00BC1D0C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158:  9# 0x00C558EC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 10# 0x00C55F58 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 11# 0x00C56288 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 12# 0x00C37AB8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 13# 0x00C37E8C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 14# 0x00BBD3B2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
-158: 15# 0xF70194FA in /lib/arm-linux-gnueabihf/libc.so.6
+158:  8# 0x00430D0C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158:  9# 0x004C48EC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 10# 0x004C4F58 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 11# 0x004C5288 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 12# 0x004A6AB8 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 13# 0x004A6E8C in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 14# 0x0042C3B2 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DTestCatch
+158: 15# 0xB65D74FA in /lib/arm-linux-gnueabihf/libc.so.6
 158: 16# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
 158: ----------
 158: ****
@@ -34287,13 +34317,17 @@
 158: ===============================================================================
 158: All tests passed (6801 assertions in 105 test cases)
 158: 
-155/230 Test #158: moldraw2DTestCatch .....................   Passed   41.37 sec
-test 160
-        Start 160: pyMolDraw2D
+155/230 Test #158: moldraw2DTestCatch .....................   Passed   15.47 sec
+test 159
+        Start 159: moldraw2DRxnTest1
 
-160: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py"
-160: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap
-160: Test timeout computed to be: 1500
+159: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/moldraw2DRxnTest1
+159: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D
+159: Test timeout computed to be: 1500
+159:  ----------------- Test 1
+159: file rxn_test1_1.png gave hash 2385318368U not the expected 1556334749U
+159: file rxn_test1_2.png gave hash 2554855195U not the expected 1924084263U
+159: file rxn_test1_3.png gave hash 2471407454U not the expected 1644921059U
 159: file rxn_test1_4.png gave hash 3424511197U not the expected 2471435686U
 159: file rxn_test1_5.png gave hash 583013587U not the expected 1428782307U
 159: file rxn_test1_6.png gave hash 2508294714U not the expected 483353696U
@@ -34320,7 +34354,16 @@
 159: draw!
 159: file rxn_test4_1.png gave hash 1061176844U not the expected 4187207676U
 159:  done
-156/230 Test #160: pyMolDraw2D ............................***Exception: SegFault  4.30 sec
+159: file rxn_test4_2.png gave hash 3123925758U not the expected 3490081297U
+159:  Done
+156/230 Test #159: moldraw2DRxnTest1 ......................   Passed    3.46 sec
+test 160
+        Start 160: pyMolDraw2D
+
+160: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py"
+160: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap
+160: Test timeout computed to be: 1500
+157/230 Test #160: pyMolDraw2D ............................***Exception: SegFault  1.51 sec
 
 test 161
         Start 161: testFMCS
@@ -34328,16 +34371,244 @@
 161: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/testFMCS
 161: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS
 161: Test timeout computed to be: 1500
-159: file rxn_test4_2.png gave hash 3123925758U not the expected 3490081297U
-159:  Done
-157/230 Test #159: moldraw2DRxnTest1 ......................   Passed    6.66 sec
+161: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
+161: Time elapsed 0.001 seconds
+161: 
+161:  test32()
+161: MCS: [#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#6]=[#6]-[#6](-[#7]-[#6]1:[#6]:[#6](-[#16](-[#7]2-[#6]-[#6]-[#8]-[#6]-[#6]-2)(=[#8])=[#8]):[#6]:[#6]:[#6]:1-[#7](-[#6]-[#6])-[#6]-[#6])=[#8] 31 atoms, 33 bonds
+161: Time elapsed 0.376 seconds
+161: 
+161:  test190()
+161: MCS: [#6]1:[#6]:[#6]2:[#8]:[#6](:[#7]:[#6]:2:[#6]:[#6]:1)-[#6]1:[#6]:[#6](-[#7]-[#6](=[#8])-[#6]):[#6]:[#6]:[#6]:1 19 atoms, 21 bonds
+161: Time elapsed 0.023 seconds
+161: 
+161:  test3()
+161: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6]-[#6](=[#8])-[#7]-[#6]-[#6]-[#6]-[#6] 14 atoms, 14 bonds
+161: Time elapsed 0.034 seconds
+161: 
+161: testSimpleFast()
+161: MCS: [#6]-[#8]-[#6]-[#6]1:[#6]:[#7]:[#6]:[#6](:[#6]:1):[#7]:[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#8]-[#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#17] 24 atoms, 26 bonds
+161: Time elapsed 0.578 seconds
+161: 
+161: testSimple()
+161: MCS: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds
+161: Time elapsed 0.526 seconds
+161: MCS MatchFusedRings: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds
+161: Time elapsed 0.421 seconds
+161: MCS MatchFusedRingsStrict: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds
+161: Time elapsed 0.313 seconds
+161: 
+161: testSegFault()
+161: MCS: [#6]1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@1 6 atoms, 6 bonds
+161: Time elapsed 0.023 seconds
+161: MCS MatchFusedRings: [#6]1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@1 6 atoms, 6 bonds
+161: Time elapsed 0.032 seconds
+161: MCS MatchFusedRingsStrict: [#6;r6,!R1]1:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@1 6 atoms, 6 bonds
+161: Time elapsed 0.031 seconds
+161: 
+161: testThreshold()
+161: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
+161: Time elapsed 0.000 seconds
+161: 
+161: testRing1()
+161: MCS: [#6]-&!@[#8]-&!@[#6]-&!@[#6]1:&@[#6]:&@[#7]:&@[#6]:&@[#6]2:&@[#6]:&@1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#7]:&@2 16 atoms, 17 bonds
+161: Time elapsed 1.457 seconds
+161: MCS MatchFusedRings: [#6]-&!@[#8]-&!@[#6]-&!@[#6]1:&@[#6]:&@[#7]:&@[#6]:&@[#6]2:&@[#6]:&@1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#7]:&@2 16 atoms, 17 bonds
+161: Time elapsed 1.510 seconds
+161: MCS MatchFusedRingsStrict: [#6;r6,!R1]1:&@[#6;r6,!R1]:&@[#7;r6,!R1]:&@[#6;r6,!R1](:&@[#6]:&@[#6]:&@1)-&!@[#6](=&!@[#8])-&!@[#8]-&!@[#6](-&!@[#6])-&!@[#6] 12 atoms, 12 bonds
+161: Time elapsed 1.238 seconds
+161: 
+161: testAtomCompareIsotopes()
+161: MCS: [0*]-[0*]-[13*] 3 atoms, 2 bonds
+161: Time elapsed 0.036 seconds
+161: 
+161: testAtomCompareAnyAtom()
+161: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
+161: Time elapsed 0.001 seconds
+161: 
+161: testAtomCompareAnyAtom()
+161: MCS: [#6]1-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:1=,-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
+161: Time elapsed 0.001 seconds
+161: 
+161: testAtomCompareAnyAtom()
+161: MCS: [#1]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#8] 8 atoms, 8 bonds
+161: Time elapsed 0.000 seconds
+161: 
+161: testAtomCompareAnyAtom()
+161: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#8] 7 atoms, 7 bonds
+161: Time elapsed 0.000 seconds
+161: 
+161: testJnk1LigandsDistance()
+161: MCS: [#6]-[#6]-[#8]-[#6]1:[#6](:[#6](:[#6]:[#6](:[#7]:1)-[#7]-[#6](=[#8])-[#6]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)-[#7])-[#6]#[#7] CCOc1nc(NC(=O)Cc2ccccc2)cc(N)c1C#N 22 atoms, 23 bonds
+161: Time elapsed 0.018 seconds
+161: MCS: [#6]-[#6]-[#8]-[#6]1:[#6](:[#6](:[#6]:[#6](:[#7]:1)-[#7]-[#6](=[#8])-[#6]-[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#6,#8])-[#7])-[#6]#[#7] *c1cccc(CC(=O)Nc2cc(N)c(C#N)c(OCC)n2)c1 23 atoms, 24 bonds
+161: Time elapsed 0.004 seconds
+161: 
+161: test18()
+161: Query +MAP [CH3:0][c:1]1[n:2][c:3]([CH2:4][N:5]([CH:6]([CH3:7])[c:8]2[n:9][cH:10][cH:11][cH:12][cH:13]2)[CH2:14][CH2:15][CH2:16][CH2:17][NH2:18])[cH:19][cH:20][cH:21]1
+161: MCS: [#6](:[#7]:[#6]-[#6]-[#7](-[#6](-[#6])-[#6]1:[#7]:[#6]:[#6]:[#6]:[#6]:1)-[#6]-[#6]-[#6]-[#6]-[#7]):[#6]:[#6]:[#6] 21 atoms, 21 bonds
+161: Time elapsed 0.015 seconds
+161: 
+161: test504()
+161: Query +MAP [CH2:0]([CH2:1][CH2:2][NH:3][C:4]([CH:5]1[CH2:6][CH:7]1[c:8]1[c:9][c:10]([Cl:11])[c:12]([Cl:13])[cH:14][c:15]1)=[O:16])[CH2:17][CH2:18][N:19]1[CH2:20][CH2:21][CH:22]([NH:23][C:24]([NH:25][c:26]2[cH:27][cH:28][c:29]([Cl:30])[cH:31][cH:32]2)=[O:33])[CH2:34]1
+161: MCS: [#6](-[#6]-[#6]-[#7]-[#6](-[#6]1-[#6]-[#6]-1-[#6]1:[#6]:[#6](-[#17]):[#6](:[#6]:[#6]:1)-[#17])=[#8])-[#6]-[#6]-[#7](-[#6]-[#6]-[#6]-[#7]-[#6](-[#7]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)=[#8])-[#6] 34 atoms, 36 bonds
+161: Time elapsed 0.200 seconds
+161: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
+161: Time elapsed 0.002 seconds
+161: MCS: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6] 25 atoms, 28 bonds
+161: Time elapsed 0.111 seconds
+161: Query Cc1c(F)c(N2CCNC(C)C2)cc2c1c(=O)c(C(=O)O)cn2C1CC1 26(26) atoms, 29(28) bonds
+161: 1 Seeds:1 MCS 25 atoms, 28 bonds for 0.0026 seconds. bond[0]=6
+161: STATISTICS:
+161: Total Growing Steps  = 1, MCS found on 1 step, for 0.0026 seconds
+161: Initial   Seeds      = 1,  Mismatched 0
+161: Inspected Seeds      = 2
+161: Rejected by BestSize = 0
+161: IndividualBondExcluded   = 0
+161: MatchCheck Seeds     = 2
+161:      MatchCalls = 2
+161:      MatchFound = 1
+161:  fastMatchCalls = 1
+161:  fastMatchFound = 0
+161:  slowMatchCalls = 2
+161:  slowMatchFound = 1
+161:   DupCacheFound = 0   0 matched, 0 mismatched
+161: HashCache size  = 1 keys
+161: HashCache size  = 1 entries
+161: FindHashInCache = 2
+161: HashFoundInCache= 0
+161: ExactMatchCalls = 0
+161: ExactMatchFound = 0
+161: Time elapsed 0.003 seconds
+161: query=OCCl SubstructMatch(useChirality=false) res =1 size=3
+161: query=OCCl SubstructMatch(useChirality=true ) res =1 size=3
+161: test target = O[C@H](F)CCl query = C(F)C useChirality = 0
+161: res sub = 1 size=3
+161: MCS: [#6](-[#9])-[#6] 3 atoms, 2 bonds
+161: test target = O[C@H](F)CCl query = C(F)C useChirality = 1
+161: res sub = 1 size=3
+161: MCS: [#6](-[#9])-[#6] 3 atoms, 2 bonds
+161: test target = CC[C@H](F)Cl query = CCC useChirality = 0
+161: res sub = 1 size=3
+161: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
+161: test target = CC[C@H](F)Cl query = CCC useChirality = 1
+161: res sub = 1 size=3
+161: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
+161: test target = CCC(F)Cl query = CC useChirality = 0
+161: res sub = 1 size=2
+161: MCS: [#6]-[#6] 2 atoms, 1 bonds
+161: test target = CCC(F)Cl query = CC useChirality = 1
+161: res sub = 1 size=2
+161: MCS: [#6]-[#6] 2 atoms, 1 bonds
+161: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 0
+161: res sub = 1 size=4
+161: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 1
+161: res sub = 1 size=4
+161: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 0
+161: res sub = 1 size=4
+161: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 1
+161: res sub = 1 size=4
+161: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = O[C@H](F)CCl query = CC(F)C useChirality = 0
+161: res sub = 0 size=0
+161: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
+161: test target = O[C@H](F)CCl query = CC(F)C useChirality = 1
+161: res sub = 0 size=0
+161: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
+161: test target = O[C@H](F)CCl query = OC(F)C useChirality = 0
+161: res sub = 1 size=4
+161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = O[C@H](F)CCl query = OC(F)C useChirality = 1
+161: res sub = 1 size=4
+161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 0
+161: res sub = 1 size=4
+161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 1
+161: res sub = 1 size=4
+161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 0
+161: res sub = 1 size=4
+161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 1
+161: res sub = 0 size=0
+161: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
+161: test target = OC(F)CCl query = OC(F)C useChirality = 0
+161: res sub = 1 size=4
+161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = OC(F)CCl query = OC(F)C useChirality = 1
+161: res sub = 1 size=4
+161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = OC(F)CCl query = O[C@H](F)C useChirality = 0
+161: res sub = 1 size=4
+161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = OC(F)CCl query = O[C@H](F)C useChirality = 1
+161: res sub = 0 size=0
+161: MCS: [#9] 1 atoms, 0 bonds
+161: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 0
+161: res sub = 1 size=4
+161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
+161: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 1
+161: res sub = 0 size=0
+161: MCS: [#9] 1 atoms, 0 bonds
+161: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 0
+161: res sub = 1 size=3
+161: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
+161: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 1
+161: res sub = 1 size=3
+161: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
+161: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 0
+161: res sub = 1 size=3
+161: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
+161: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 1
+161: res sub = 1 size=3
+161: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
+161: 
+161: 0. <<<<<<<<< actual MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds >>>>>>>
+161: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 0
+161: res sub = 1 size=3
+161: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
+161: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 1
+161: res sub = 1 size=3
+161: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
+161: 	done
+161: [02:05:46] The provided InitialSeed is not an MCS and will be ignored
+144: [02:06:07]   done
+161: MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
+161: MCS MatchStereo true  : [#6]-[#6]-[#6] 3 atoms, 2 bonds
+161: MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
+161: MCS MatchStereo true  : [#6]-[#6]-[#6] 3 atoms, 2 bonds
+161: MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
+161: MCS MatchStereo true  : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
+161: TOTAL Time elapsed 45.59 seconds
+158/230 Test #161: testFMCS ...............................   Passed   45.77 sec
 test 162
         Start 162: pyFMCS
 
 162: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/FMCS/Wrap/testFMCS.py"
 162: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap
 162: Test timeout computed to be: 1500
-158/230 Test #162: pyFMCS .................................***Exception: SegFault  3.36 sec
+144: [02:06:07] 	---------------------------------
+144: [02:06:07] 	 test github issue 256: handling of zero-atom molecules
+144: 
+144: [02:06:07] 	---------------------------------
+144: [02:06:07] 	 test embedder callback function 
+144: [02:06:07] 	---------------------------------
+144: [02:06:07] 	 test multi-threaded multi-conf embedding 
+144: 
+144: [02:06:20] 	---------------------------------
+144: [02:06:20] 	 test github issue 563: Incorrect ring stereochemistry after embedding
+144: 
+144: CNC[C@H]1CC[C@H](C[NH3+])CC1
+144: [02:06:24] 	---------------------------------
+144: [02:06:24] 	 test github issue 568: Incorrect stereochemistry after embedding
+144: 
+144: C1=NC[C@]2(CN3CC[C@@H]2C3)O1
+144: O=C(O)[C@@H]1[C@H](C(=O)O)[C@H]2CC[C@@H]1O2
+159/230 Test #162: pyFMCS .................................***Exception: SegFault  0.66 sec
 
 test 163
         Start 163: FMCStest
@@ -34345,6 +34616,7 @@
 163: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test/FMCStest
 163: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test
 163: Test timeout computed to be: 1500
+144: O=C(CCc1ccccc1)OC[C@H]1C[C@@H]2O[C@H]1[C@H]1C(=O)OC(=O)[C@H]12
 163: fopen testChEMBL_Txt(): No such file or directory
 163: fopen testChEMBL_Txt(): No such file or directory
 163: fopen testChEMBL_Txt(): No such file or directory
@@ -36310,25 +36582,25 @@
 163: 
 163: testFileSDF_RandomSet(): benchmark/chembl13_threshold_90.smi
 163: ERROR: RDKit could not load input file
-159/230 Test #163: FMCStest ...............................   Passed    0.58 sec
+160/230 Test #163: FMCStest ...............................   Passed    0.31 sec
 test 164
         Start 164: molHashCatchTest
 
 164: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/molHashCatchTest
 164: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash
 164: Test timeout computed to be: 1500
-164: Randomness seeded to: 2182998190
+164: Randomness seeded to: 1218324181
 164: ===============================================================================
 164: All tests passed (332 assertions in 13 test cases)
 164: 
-160/230 Test #164: molHashCatchTest .......................   Passed    1.03 sec
+161/230 Test #164: molHashCatchTest .......................   Passed    0.18 sec
 test 165
         Start 165: pyMolHash
 
 165: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolHash/Wrap/testMolHash.py"
 165: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap
 165: Test timeout computed to be: 1500
-161/230 Test #165: pyMolHash ..............................***Exception: SegFault  3.26 sec
+162/230 Test #165: pyMolHash ..............................***Exception: SegFault  0.85 sec
 
 test 166
         Start 166: testMMPA
@@ -36338,7 +36610,7 @@
 166: Test timeout computed to be: 1500
 166: 
 166: TEST mol: Case1 Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1 Case1
-166: Time elapsed 0.088629 seconds
+166: Time elapsed 0.011424 seconds
 166:  1: res= NULL,C[*:1].C[C:2](C(=O)Nc1ccccc1[*:1])[NH+]1CCCC1
 166:  1: NOREF. Reference data NOT LISTED in test case.
 166:  2: res= c1ccc([*:2])c([*:1])c1,C[*:1].C[C:3](C(=O)N[*:2])[NH+]1CCCC1
@@ -36379,7 +36651,7 @@
 166:  --- UNMATCHED Reference RESULTS: --- 
 166:  1: Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1,Case1,[*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:2].Cc1ccccc1NC(=O)[*:1]
 166:  -----------------------------------
-166: Time elapsed 0.039834 seconds
+166: Time elapsed 0.009698 seconds
 166: 
 166: TEST 1 mol: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-] ZINC21984717
 166:    1: NULL, C[*:1].O=C(NCCO)c1c([*:1])n([O-])c2ccccc2[n+]1=O
@@ -36421,7 +36693,7 @@
 166:  -----------------------------------
 166: 
 166: TEST mol: ZINC21984717 Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-] ZINC21984717
-166: Time elapsed 0.040316 seconds
+166: Time elapsed 0.010709 seconds
 166:  1: res= NULL,C[*:1].O=C(NCCO)c1c([*:1])n([O-])c2ccccc2[n+]1=O
 166:  1: PASSED. matchedRefRes = 4
 166:  2: res= O=[n+]1c([*:2])c([*:1])n([O-])c2ccccc21,C[*:1].O=C(NCCO)[*:2]
@@ -36461,7 +36733,7 @@
 166:  -----------------------------------
 166: 
 166: TEST mol: Case1-SIMPLE CC(N1CC1)C(=O) Case1-SIMPLE
-166: Time elapsed 0.010707 seconds
+166: Time elapsed 0.002930 seconds
 166:  1: res= NULL,C[*:1].O=CC(N1CC1)[*:1]
 166:  1: PASSED. matchedRefRes = 2
 166:  2: res= O=CC([*:1])[*:2],C1CN1[*:2].C[*:1]
@@ -36483,7 +36755,7 @@
 166:  -----------------------------------
 166: 
 166: TEST mol: Case1 Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1 Case1
-166: Time elapsed 0.043469 seconds
+166: Time elapsed 0.010907 seconds
 166:  1: res= NULL,C[*:1].C[C:2](C(=O)Nc1ccccc1[*:1])[NH+]1CCCC1
 166:  1: NOREF. Reference data NOT LISTED in test case.
 166:  2: res= c1ccc([*:2])c([*:1])c1,C[*:1].C[C:3](C(=O)N[*:2])[NH+]1CCCC1
@@ -36526,7 +36798,7 @@
 166:  -----------------------------------
 166: 
 166: TEST mol: Case2 O=C(OCc1ccccc1)C(O)c1ccccc1 Case2
-166: Time elapsed 0.050144 seconds
+166: Time elapsed 0.012123 seconds
 166:  1: res= NULL,O=C(O[*:1])C(O)c1ccccc1.c1ccc(C[*:1])cc1
 166:  1: NOREF. Reference data NOT LISTED in test case.
 166:  2: res= C([*:1])[*:2],O=C(O[*:1])C(O)c1ccccc1.c1ccc([*:2])cc1
@@ -36567,14 +36839,15 @@
 166:  --- ALL PASSED --- 
 166:  -----------------------------------
 166: 5 TEST CASES FAILED 
-162/230 Test #166: testMMPA ...............................   Passed    1.61 sec
+163/230 Test #166: testMMPA ...............................   Passed    0.34 sec
 test 167
         Start 167: pyMMPA
 
 167: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MMPA/Wrap/testMMPA.py"
 167: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/Wrap
 167: Test timeout computed to be: 1500
-163/230 Test #167: pyMMPA .................................***Exception: SegFault  3.54 sec
+144: Cn1cc(C2=NC[C@]3(CN4CC[C@@H]3C4)O2)c2ccccc21
+164/230 Test #167: pyMMPA .................................***Exception: SegFault  0.67 sec
 
 test 168
         Start 168: testRascalMCES
@@ -36582,496 +36855,85 @@
 168: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/testRascalMCES
 168: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES
 168: Test timeout computed to be: 1500
-168: Randomness seeded to: 2429660696
-168: Timed out after 11 seconds.
-161: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
-161: Time elapsed 0.014 seconds
-161: 
-161:  test32()
-161: MCS: [#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#6]=[#6]-[#6](-[#7]-[#6]1:[#6]:[#6](-[#16](-[#7]2-[#6]-[#6]-[#8]-[#6]-[#6]-2)(=[#8])=[#8]):[#6]:[#6]:[#6]:1-[#7](-[#6]-[#6])-[#6]-[#6])=[#8] 31 atoms, 33 bonds
-161: Time elapsed 1.072 seconds
-161: 
-161:  test190()
-161: MCS: [#6]1:[#6]:[#6]2:[#8]:[#6](:[#7]:[#6]:2:[#6]:[#6]:1)-[#6]1:[#6]:[#6](-[#7]-[#6](=[#8])-[#6]):[#6]:[#6]:[#6]:1 19 atoms, 21 bonds
-161: Time elapsed 0.139 seconds
-161: 
-161:  test3()
-161: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6]-[#6](=[#8])-[#7]-[#6]-[#6]-[#6]-[#6] 14 atoms, 14 bonds
-161: Time elapsed 0.325 seconds
-161: 
-161: testSimpleFast()
-161: MCS: [#6]-[#8]-[#6]-[#6]1:[#6]:[#7]:[#6]:[#6](:[#6]:1):[#7]:[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#8]-[#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#17] 24 atoms, 26 bonds
-161: Time elapsed 2.149 seconds
-161: 
-161: testSimple()
-161: MCS: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds
-161: Time elapsed 1.262 seconds
-161: MCS MatchFusedRings: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds
-161: Time elapsed 1.907 seconds
-161: MCS MatchFusedRingsStrict: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds
-161: Time elapsed 1.855 seconds
-161: 
-161: testSegFault()
-161: MCS: [#6]1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@1 6 atoms, 6 bonds
-161: Time elapsed 0.203 seconds
-161: MCS MatchFusedRings: [#6]1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@1 6 atoms, 6 bonds
-161: Time elapsed 0.275 seconds
-161: MCS MatchFusedRingsStrict: [#6;r6,!R1]1:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@1 6 atoms, 6 bonds
-161: Time elapsed 0.260 seconds
-161: 
-161: testThreshold()
-161: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
-161: Time elapsed 0.001 seconds
-161: 
-161: testRing1()
-161: MCS: [#6]-&!@[#8]-&!@[#6]-&!@[#6]1:&@[#6]:&@[#7]:&@[#6]:&@[#6]2:&@[#6]:&@1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#7]:&@2 16 atoms, 17 bonds
-161: Time elapsed 5.251 seconds
-161: MCS MatchFusedRings: [#6]-&!@[#8]-&!@[#6]-&!@[#6]1:&@[#6]:&@[#7]:&@[#6]:&@[#6]2:&@[#6]:&@1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#7]:&@2 16 atoms, 17 bonds
-161: Time elapsed 6.358 seconds
-161: MCS MatchFusedRingsStrict: [#6;r6,!R1]1:&@[#6;r6,!R1]:&@[#7;r6,!R1]:&@[#6;r6,!R1](:&@[#6]:&@[#6]:&@1)-&!@[#6](=&!@[#8])-&!@[#8]-&!@[#6](-&!@[#6])-&!@[#6] 12 atoms, 12 bonds
-161: Time elapsed 6.786 seconds
-161: 
-161: testAtomCompareIsotopes()
-161: MCS: [0*]-[0*]-[13*] 3 atoms, 2 bonds
-161: Time elapsed 0.128 seconds
-161: 
-161: testAtomCompareAnyAtom()
-161: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
-161: Time elapsed 0.013 seconds
-161: 
-161: testAtomCompareAnyAtom()
-161: MCS: [#6]1-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:1=,-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
-161: Time elapsed 0.013 seconds
-161: 
-161: testAtomCompareAnyAtom()
-161: MCS: [#1]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#8] 8 atoms, 8 bonds
-161: Time elapsed 0.001 seconds
-161: 
-161: testAtomCompareAnyAtom()
-161: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#8] 7 atoms, 7 bonds
-161: Time elapsed 0.001 seconds
-161: 
-161: testJnk1LigandsDistance()
-161: MCS: [#6]-[#6]-[#8]-[#6]1:[#6](:[#6](:[#6]:[#6](:[#7]:1)-[#7]-[#6](=[#8])-[#6]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)-[#7])-[#6]#[#7] CCOc1nc(NC(=O)Cc2ccccc2)cc(N)c1C#N 22 atoms, 23 bonds
-161: Time elapsed 0.174 seconds
-161: MCS: [#6]-[#6]-[#8]-[#6]1:[#6](:[#6](:[#6]:[#6](:[#7]:1)-[#7]-[#6](=[#8])-[#6]-[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#6,#8])-[#7])-[#6]#[#7] *c1cccc(CC(=O)Nc2cc(N)c(C#N)c(OCC)n2)c1 23 atoms, 24 bonds
-161: Time elapsed 0.036 seconds
-161: 
-161: test18()
-161: Query +MAP [CH3:0][c:1]1[n:2][c:3]([CH2:4][N:5]([CH:6]([CH3:7])[c:8]2[n:9][cH:10][cH:11][cH:12][cH:13]2)[CH2:14][CH2:15][CH2:16][CH2:17][NH2:18])[cH:19][cH:20][cH:21]1
-161: MCS: [#6](:[#7]:[#6]-[#6]-[#7](-[#6](-[#6])-[#6]1:[#7]:[#6]:[#6]:[#6]:[#6]:1)-[#6]-[#6]-[#6]-[#6]-[#7]):[#6]:[#6]:[#6] 21 atoms, 21 bonds
-161: Time elapsed 0.128 seconds
-161: 
-161: test504()
-161: Query +MAP [CH2:0]([CH2:1][CH2:2][NH:3][C:4]([CH:5]1[CH2:6][CH:7]1[c:8]1[c:9][c:10]([Cl:11])[c:12]([Cl:13])[cH:14][c:15]1)=[O:16])[CH2:17][CH2:18][N:19]1[CH2:20][CH2:21][CH:22]([NH:23][C:24]([NH:25][c:26]2[cH:27][cH:28][c:29]([Cl:30])[cH:31][cH:32]2)=[O:33])[CH2:34]1
-161: MCS: [#6](-[#6]-[#6]-[#7]-[#6](-[#6]1-[#6]-[#6]-1-[#6]1:[#6]:[#6](-[#17]):[#6](:[#6]:[#6]:1)-[#17])=[#8])-[#6]-[#6]-[#7](-[#6]-[#6]-[#6]-[#7]-[#6](-[#7]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)=[#8])-[#6] 34 atoms, 36 bonds
-161: Time elapsed 1.708 seconds
-161: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
-161: Time elapsed 0.029 seconds
-161: MCS: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6] 25 atoms, 28 bonds
-161: Time elapsed 0.491 seconds
-161: Query Cc1c(F)c(N2CCNC(C)C2)cc2c1c(=O)c(C(=O)O)cn2C1CC1 26(26) atoms, 29(28) bonds
-161: 1 Seeds:1 MCS 25 atoms, 28 bonds for 0.0375 seconds. bond[0]=6
-161: STATISTICS:
-161: Total Growing Steps  = 1, MCS found on 1 step, for 0.0375 seconds
-161: Initial   Seeds      = 1,  Mismatched 0
-161: Inspected Seeds      = 2
-161: Rejected by BestSize = 0
-161: IndividualBondExcluded   = 0
-161: MatchCheck Seeds     = 2
-161:      MatchCalls = 2
-161:      MatchFound = 1
-161:  fastMatchCalls = 1
-161:  fastMatchFound = 0
-161:  slowMatchCalls = 2
-161:  slowMatchFound = 1
-161:   DupCacheFound = 0   0 matched, 0 mismatched
-161: HashCache size  = 1 keys
-161: HashCache size  = 1 entries
-161: FindHashInCache = 2
-161: HashFoundInCache= 0
-161: ExactMatchCalls = 0
-161: ExactMatchFound = 0
-161: Time elapsed 0.039 seconds
-161: query=OCCl SubstructMatch(useChirality=false) res =1 size=3
-161: query=OCCl SubstructMatch(useChirality=true ) res =1 size=3
-161: test target = O[C@H](F)CCl query = C(F)C useChirality = 0
-161: res sub = 1 size=3
-161: MCS: [#6](-[#9])-[#6] 3 atoms, 2 bonds
-161: test target = O[C@H](F)CCl query = C(F)C useChirality = 1
-161: res sub = 1 size=3
-161: MCS: [#6](-[#9])-[#6] 3 atoms, 2 bonds
-161: test target = CC[C@H](F)Cl query = CCC useChirality = 0
-161: res sub = 1 size=3
-161: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
-161: test target = CC[C@H](F)Cl query = CCC useChirality = 1
-161: res sub = 1 size=3
-161: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
-161: test target = CCC(F)Cl query = CC useChirality = 0
-161: res sub = 1 size=2
-161: MCS: [#6]-[#6] 2 atoms, 1 bonds
-161: test target = CCC(F)Cl query = CC useChirality = 1
-161: res sub = 1 size=2
-161: MCS: [#6]-[#6] 2 atoms, 1 bonds
-161: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 0
-161: res sub = 1 size=4
-161: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 1
-161: res sub = 1 size=4
-161: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 0
-161: res sub = 1 size=4
-161: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 1
-161: res sub = 1 size=4
-161: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = O[C@H](F)CCl query = CC(F)C useChirality = 0
-161: res sub = 0 size=0
-161: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
-161: test target = O[C@H](F)CCl query = CC(F)C useChirality = 1
-161: res sub = 0 size=0
-161: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
-161: test target = O[C@H](F)CCl query = OC(F)C useChirality = 0
-161: res sub = 1 size=4
-161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = O[C@H](F)CCl query = OC(F)C useChirality = 1
-161: res sub = 1 size=4
-161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 0
-161: res sub = 1 size=4
-161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 1
-161: res sub = 1 size=4
-161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 0
-161: res sub = 1 size=4
-161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 1
-161: res sub = 0 size=0
-161: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
-161: test target = OC(F)CCl query = OC(F)C useChirality = 0
-161: res sub = 1 size=4
-161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = OC(F)CCl query = OC(F)C useChirality = 1
-161: res sub = 1 size=4
-161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = OC(F)CCl query = O[C@H](F)C useChirality = 0
-161: res sub = 1 size=4
-161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = OC(F)CCl query = O[C@H](F)C useChirality = 1
-161: res sub = 0 size=0
-161: MCS: [#9] 1 atoms, 0 bonds
-161: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 0
-161: res sub = 1 size=4
-161: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-161: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 1
-161: res sub = 0 size=0
-161: MCS: [#9] 1 atoms, 0 bonds
-161: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 0
-161: res sub = 1 size=3
-161: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
-161: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 1
-161: res sub = 1 size=3
-161: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
-161: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 0
-161: res sub = 1 size=3
-161: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
-161: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 1
-161: res sub = 1 size=3
-161: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
-161: 
-161: 0. <<<<<<<<< actual MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds >>>>>>>
-161: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 0
-161: res sub = 1 size=3
-161: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
-161: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 1
-161: res sub = 1 size=3
-161: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
-161: 	done
-161: [19:22:46] The provided InitialSeed is not an MCS and will be ignored
-148: 	---------------------------------
-148: 	 test getO3AForProbeConfs
-148: 
-148: ***********************************************************
-164/230 Test #148: testO3AAlign ...........................   Passed  578.01 sec
+144: Nc1ncnc2c1ncn2[C@@H]1C=C(CO)[C@@H](O)[C@H]1O
+144: CO[C@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
+144: CO[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
+144: CCS[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
+144: CCCCC[C@H](O)/C=C/[C@@]1(F)[C@H](O)C[C@H](O)[C@@H]1C/C=C\CCCC(=O)OC
+145: ===============================================================================
+145: All tests passed (12735 assertions in 18 test cases)
+145: 
+165/230 Test #145: distGeomHelpersCatch ...................   Passed  321.23 sec
 test 169
         Start 169: testRascalCluster
 
 169: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/testRascalCluster
 169: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES
 169: Test timeout computed to be: 1500
-168: Timed out after 71 seconds.
-145: [19:24:45] UFFTYPER: Unrecognized atom type: S_6+6 (0)
-145: [19:24:45] UFFTYPER: Warning: hybridization set to SP3 for atom 0
-145: [19:24:45] UFFTYPER: Unrecognized charge state for atom: 0
-169: Randomness seeded to: 2496371960
+144: CCCCC[C@@H](O)/C=C/[C@@]1(F)[C@H](C/C=C\CCCC(=O)OC)[C@H](O)C[C@@H]1O
+168: Randomness seeded to: 513755530
+168: Timed out after 11 seconds.
+144: CNC(=O)Oc1cccc2c1OC[C@@H]1CCN(C)[C@H]21
+144: CNC(=O)Oc1ccc2c(c1)[C@@H]1[C@@H](CCN1C)CO2
+144: CN1CC[C@H]2COc3c(O)cccc3[C@H]21
+144: CC(=O)C[C@@]12CCC[C@H]1[C@@H]1CCC3=CC(=O)CC[C@@H]3[C@H]1CC2
+144: O=C(O)[C@@H]1C[C@H]2C[C@@H](CCc3nn[nH]n3)CC[C@H]2CN1
+144: COc1ccc2c(c1)OC[C@@H](N1CCC(O)(c3ccc(F)cc3)CC1)[C@H]2O
+144: Oc1ccc2c(c1)OC[C@@H](N1CCC(Cc3ccccc3)CC1)[C@H]2O
+144: Oc1ccc2c(c1)OC[C@H](N1CCC(O)(c3ccccc3)CC1)[C@@H]2O
+144: CC(=O)c1ccc2c(c1)[C@@]13CCCC[C@H]1[C@@H](C2)N(CC1CC1)CC3
+144: CC(=O)O[C@@H]1CC[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C1)OCO5
+144: COc1cc2c(cc1OC)[C@@H]1C[C@@H]3C[C@H](O)CC[C@@H]3CN1CC2
+144: N#C[C@@H]1C[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C[C@@H]1O)OCO5
+144: COC(=O)[C@@H]1C[C@](C)(C(=O)O)NC(=O)N1
+144: CC(=O)OC1=C(Sc2ccccc2)C[C@H]2Cc3cc4cccc(O)c4c(O)c3C(=O)[C@H]2C1
+169: Randomness seeded to: 4134226019
 169: /build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/data/chembl_1907596.smi
-161: MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
-161: MCS MatchStereo true  : [#6]-[#6]-[#6] 3 atoms, 2 bonds
-161: MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
-161: MCS MatchStereo true  : [#6]-[#6]-[#6] 3 atoms, 2 bonds
-161: MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
-161: MCS MatchStereo true  : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
-161: [19:25:14] 
-161: 
-161: ****
-161: Test Assert
-161: Expression Failed: 
-161: Violation occurred on line 2937 in file ./Code/GraphMol/FMCS/testFMCS_Unit.cpp
-161: Failed Expression: !mcs.Canceled
-161: ----------
-161: Stacktrace:
-161:  0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-161:  1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
-161:  2# 0x00ACAECC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/testFMCS
-161:  3# 0x00AC0DC6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/testFMCS
-161:  4# 0xF71824FA in /lib/arm-linux-gnueabihf/libc.so.6
-161:  5# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
-161: ----------
-161: ****
-161: 
-161: terminate called after throwing an instance of 'Invar::Invariant'
-161:   what():  Expression Failed: 
-165/230 Test #161: testFMCS ...............................Subprocess aborted***Exception: 204.32 sec
-MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
-Time elapsed 0.014 seconds
-
- test32()
-MCS: [#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#6]=[#6]-[#6](-[#7]-[#6]1:[#6]:[#6](-[#16](-[#7]2-[#6]-[#6]-[#8]-[#6]-[#6]-2)(=[#8])=[#8]):[#6]:[#6]:[#6]:1-[#7](-[#6]-[#6])-[#6]-[#6])=[#8] 31 atoms, 33 bonds
-Time elapsed 1.072 seconds
-
- test190()
-MCS: [#6]1:[#6]:[#6]2:[#8]:[#6](:[#7]:[#6]:2:[#6]:[#6]:1)-[#6]1:[#6]:[#6](-[#7]-[#6](=[#8])-[#6]):[#6]:[#6]:[#6]:1 19 atoms, 21 bonds
-Time elapsed 0.139 seconds
-
- test3()
-MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6]-[#6](=[#8])-[#7]-[#6]-[#6]-[#6]-[#6] 14 atoms, 14 bonds
-Time elapsed 0.325 seconds
-
-testSimpleFast()
-MCS: [#6]-[#8]-[#6]-[#6]1:[#6]:[#7]:[#6]:[#6](:[#6]:1):[#7]:[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#8]-[#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#17] 24 atoms, 26 bonds
-Time elapsed 2.149 seconds
-
-testSimple()
-MCS: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds
-Time elapsed 1.262 seconds
-MCS MatchFusedRings: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds
-Time elapsed 1.907 seconds
-MCS MatchFusedRingsStrict: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds
-Time elapsed 1.855 seconds
-
-testSegFault()
-MCS: [#6]1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@1 6 atoms, 6 bonds
-Time elapsed 0.203 seconds
-MCS MatchFusedRings: [#6]1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@1 6 atoms, 6 bonds
-Time elapsed 0.275 seconds
-MCS MatchFusedRingsStrict: [#6;r6,!R1]1:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@1 6 atoms, 6 bonds
-Time elapsed 0.260 seconds
-
-testThreshold()
-MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
-Time elapsed 0.001 seconds
-
-testRing1()
-MCS: [#6]-&!@[#8]-&!@[#6]-&!@[#6]1:&@[#6]:&@[#7]:&@[#6]:&@[#6]2:&@[#6]:&@1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#7]:&@2 16 atoms, 17 bonds
-Time elapsed 5.251 seconds
-MCS MatchFusedRings: [#6]-&!@[#8]-&!@[#6]-&!@[#6]1:&@[#6]:&@[#7]:&@[#6]:&@[#6]2:&@[#6]:&@1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#7]:&@2 16 atoms, 17 bonds
-Time elapsed 6.358 seconds
-MCS MatchFusedRingsStrict: [#6;r6,!R1]1:&@[#6;r6,!R1]:&@[#7;r6,!R1]:&@[#6;r6,!R1](:&@[#6]:&@[#6]:&@1)-&!@[#6](=&!@[#8])-&!@[#8]-&!@[#6](-&!@[#6])-&!@[#6] 12 atoms, 12 bonds
-Time elapsed 6.786 seconds
-
-testAtomCompareIsotopes()
-MCS: [0*]-[0*]-[13*] 3 atoms, 2 bonds
-Time elapsed 0.128 seconds
-
-testAtomCompareAnyAtom()
-MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
-Time elapsed 0.013 seconds
-
-testAtomCompareAnyAtom()
-MCS: [#6]1-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:1=,-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
-Time elapsed 0.013 seconds
-
-testAtomCompareAnyAtom()
-MCS: [#1]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#8] 8 atoms, 8 bonds
-Time elapsed 0.001 seconds
-
-testAtomCompareAnyAtom()
-MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#8] 7 atoms, 7 bonds
-Time elapsed 0.001 seconds
-
-testJnk1LigandsDistance()
-MCS: [#6]-[#6]-[#8]-[#6]1:[#6](:[#6](:[#6]:[#6](:[#7]:1)-[#7]-[#6](=[#8])-[#6]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)-[#7])-[#6]#[#7] CCOc1nc(NC(=O)Cc2ccccc2)cc(N)c1C#N 22 atoms, 23 bonds
-Time elapsed 0.174 seconds
-MCS: [#6]-[#6]-[#8]-[#6]1:[#6](:[#6](:[#6]:[#6](:[#7]:1)-[#7]-[#6](=[#8])-[#6]-[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#6,#8])-[#7])-[#6]#[#7] *c1cccc(CC(=O)Nc2cc(N)c(C#N)c(OCC)n2)c1 23 atoms, 24 bonds
-Time elapsed 0.036 seconds
-
-test18()
-Query +MAP [CH3:0][c:1]1[n:2][c:3]([CH2:4][N:5]([CH:6]([CH3:7])[c:8]2[n:9][cH:10][cH:11][cH:12][cH:13]2)[CH2:14][CH2:15][CH2:16][CH2:17][NH2:18])[cH:19][cH:20][cH:21]1
-MCS: [#6](:[#7]:[#6]-[#6]-[#7](-[#6](-[#6])-[#6]1:[#7]:[#6]:[#6]:[#6]:[#6]:1)-[#6]-[#6]-[#6]-[#6]-[#7]):[#6]:[#6]:[#6] 21 atoms, 21 bonds
-Time elapsed 0.128 seconds
-
-test504()
-Query +MAP [CH2:0]([CH2:1][CH2:2][NH:3][C:4]([CH:5]1[CH2:6][CH:7]1[c:8]1[c:9][c:10]([Cl:11])[c:12]([Cl:13])[cH:14][c:15]1)=[O:16])[CH2:17][CH2:18][N:19]1[CH2:20][CH2:21][CH:22]([NH:23][C:24]([NH:25][c:26]2[cH:27][cH:28][c:29]([Cl:30])[cH:31][cH:32]2)=[O:33])[CH2:34]1
-MCS: [#6](-[#6]-[#6]-[#7]-[#6](-[#6]1-[#6]-[#6]-1-[#6]1:[#6]:[#6](-[#17]):[#6](:[#6]:[#6]:1)-[#17])=[#8])-[#6]-[#6]-[#7](-[#6]-[#6]-[#6]-[#7]-[#6](-[#7]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)=[#8])-[#6] 34 atoms, 36 bonds
-Time elapsed 1.708 seconds
-MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
-Time elapsed 0.029 seconds
-MCS: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6] 25 atoms, 28 bonds
-Time elapsed 0.491 seconds
-Query Cc1c(F)c(N2CCNC(C)C2)cc2c1c(=O)c(C(=O)O)cn2C1CC1 26(26) atoms, 29(28) bonds
-1 Seeds:1 MCS 25 atoms, 28 bonds for 0.0375 seconds. bond[0]=6
-STATISTICS:
-Total Growing Steps  = 1, MCS found on 1 step, for 0.0375 seconds
-Initial   Seeds      = 1,  Mismatched 0
-Inspected Seeds      = 2
-Rejected by BestSize = 0
-IndividualBondExcluded   = 0
-MatchCheck Seeds     = 2
-     MatchCalls = 2
-     MatchFound = 1
- fastMatchCalls = 1
- fastMatchFound = 0
- slowMatchCalls = 2
- slowMatchFound = 1
-  DupCacheFound = 0   0 matched, 0 mismatched
-HashCache size  = 1 keys
-HashCache size  = 1 entries
-FindHashInCache = 2
-HashFoundInCache= 0
-ExactMatchCalls = 0
-ExactMatchFound = 0
-Time elapsed 0.039 seconds
-query=OCCl SubstructMatch(useChirality=false) res =1 size=3
-query=OCCl SubstructMatch(useChirality=true ) res =1 size=3
-test target = O[C@H](F)CCl query = C(F)C useChirality = 0
-res sub = 1 size=3
-MCS: [#6](-[#9])-[#6] 3 atoms, 2 bonds
-test target = O[C@H](F)CCl query = C(F)C useChirality = 1
-res sub = 1 size=3
-MCS: [#6](-[#9])-[#6] 3 atoms, 2 bonds
-test target = CC[C@H](F)Cl query = CCC useChirality = 0
-res sub = 1 size=3
-MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
-test target = CC[C@H](F)Cl query = CCC useChirality = 1
-res sub = 1 size=3
-MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
-test target = CCC(F)Cl query = CC useChirality = 0
-res sub = 1 size=2
-MCS: [#6]-[#6] 2 atoms, 1 bonds
-test target = CCC(F)Cl query = CC useChirality = 1
-res sub = 1 size=2
-MCS: [#6]-[#6] 2 atoms, 1 bonds
-test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 0
-res sub = 1 size=4
-MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 1
-res sub = 1 size=4
-MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 0
-res sub = 1 size=4
-MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 1
-res sub = 1 size=4
-MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = O[C@H](F)CCl query = CC(F)C useChirality = 0
-res sub = 0 size=0
-MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
-test target = O[C@H](F)CCl query = CC(F)C useChirality = 1
-res sub = 0 size=0
-MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
-test target = O[C@H](F)CCl query = OC(F)C useChirality = 0
-res sub = 1 size=4
-MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = O[C@H](F)CCl query = OC(F)C useChirality = 1
-res sub = 1 size=4
-MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 0
-res sub = 1 size=4
-MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 1
-res sub = 1 size=4
-MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 0
-res sub = 1 size=4
-MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 1
-res sub = 0 size=0
-MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
-test target = OC(F)CCl query = OC(F)C useChirality = 0
-res sub = 1 size=4
-MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = OC(F)CCl query = OC(F)C useChirality = 1
-res sub = 1 size=4
-MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = OC(F)CCl query = O[C@H](F)C useChirality = 0
-res sub = 1 size=4
-MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = OC(F)CCl query = O[C@H](F)C useChirality = 1
-res sub = 0 size=0
-MCS: [#9] 1 atoms, 0 bonds
-test target = OC(F)CCl query = O[C@@H](F)C useChirality = 0
-res sub = 1 size=4
-MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
-test target = OC(F)CCl query = O[C@@H](F)C useChirality = 1
-res sub = 0 size=0
-MCS: [#9] 1 atoms, 0 bonds
-test target = O[C@H](F)CCl query = O[C@H]C useChirality = 0
-res sub = 1 size=3
-MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
-test target = O[C@H](F)CCl query = O[C@H]C useChirality = 1
-res sub = 1 size=3
-MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
-test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 0
-res sub = 1 size=3
-MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
-test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 1
-res sub = 1 size=3
-MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
-
-0. <<<<<<<<< actual MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds >>>>>>>
-test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 0
-res sub = 1 size=3
-MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
-test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 1
-res sub = 1 size=3
-MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
-	done
-[19:22:46] The provided InitialSeed is not an MCS and will be ignored
-MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
-MCS MatchStereo true  : [#6]-[#6]-[#6] 3 atoms, 2 bonds
-MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
-MCS MatchStereo true  : [#6]-[#6]-[#6] 3 atoms, 2 bonds
-MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
-MCS MatchStereo true  : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds
-[19:25:14] 
-
-****
-Test Assert
-Expression Failed: 
-Violation occurred on line 2937 in file ./Code/GraphMol/FMCS/testFMCS_Unit.cpp
-Failed Expression: !mcs.Canceled
-----------
-Stacktrace:
- 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
- 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf//lib/libRDKitRDGeneral.so.1
- 2# 0x00ACAECC in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/testFMCS
- 3# 0x00AC0DC6 in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/testFMCS
- 4# 0xF71824FA in /lib/arm-linux-gnueabihf/libc.so.6
- 5# __libc_start_main in /lib/arm-linux-gnueabihf/libc.so.6
-----------
-****
-
-terminate called after throwing an instance of 'Invar::Invariant'
-  what():  Expression Failed: 
-
+144: Nc1ncnc2c1ncn2[C@@H]1C[C@H](CO)[C@@H](O)C1
+144: C[C@H](C(N)=O)N1CC[C@@]23CCCC[C@@H]2[C@@H]1Cc1ccc(OCc2cccc(F)c2)cc13
+168: Timed out after 71 seconds.
+144: CN1C(=O)CC[C@@]2(C)C1=CCc1cc(Cl)ccc12
+144: Cc1nc(COc2ccc3c(c2)[C@@H](O)[C@@H](Cc2cccnc2)CO3)ccc1[N+](=O)[O-]
+144: [02:08:58] Molecule does not have explicit Hs. Consider calling AddHs()
+144: [02:08:14] 	---------------------------------
+144: [02:08:14] 	 test github issue 696: Bad 1-4 bounds matrix elements in highly constrained system
+144: [02:08:14] 	---------------------------------
+144: [02:08:14] 	 More ChEMBL molecules failing bounds smoothing.
+144: [02:08:15] 	---------------------------------
+144: [02:08:15] 	 ugly conformations can be generated for highly constrained ring systems.
+144: [02:08:15] 	---------------------------------
+144: [02:08:15] 	 test embed parameters structure.
+144: [02:08:16] 	---------------------------------
+144: [02:08:16] 	 test github 1227: Hs being used in RMSD filtering.
+144: [02:08:16] 	---------------------------------
+144: [02:08:16] 	 Failure to embed larger aromatic rings.
+144: [02:08:29] 	---------------------------------
+144: [02:08:29] 	 Deterministic with large random seeds
+144: [02:08:39] 	---------------------------------
+144: [02:08:39] 	 Github #1990: seg fault after RemoveHs
+144: [02:08:42] 	---------------------------------
+144: [02:08:42] 	 Github #2246: Use coordMap when starting embedding from random coords
+144: [02:08:57] 	---------------------------------
+144: [02:08:57] 	 Providing a distance bounds matrix.
+144: [02:08:57] 	---------------------------------
+144: [02:08:57] 	 Disabling fragmentation.
+144: [02:08:57] 	---------------------------------
+144: [02:08:57] 	 Using symmetry in conformation pruning.
+144: [02:08:58] 	---------------------------------
+144: [02:08:58] 	 Force trans amides.
+144: [02:08:58] 	---------------------------------
+144: [02:08:58] 	 test missing Hs warning.
+144: [02:08:58] 	---------------------------------
+144: [02:08:58] 	 basic H bond support.
+144: [02:08:58] *******************************************************
+166/230 Test #144: testDistGeomHelpers ....................   Passed  468.02 sec
 test 170
         Start 170: pyRascalMCES
 
 170: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/RascalMCES/Wrap/testRascalMCES.py"
 170: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RascalMCES/Wrap
 170: Test timeout computed to be: 1500
-166/230 Test #170: pyRascalMCES ...........................***Exception: SegFault  2.75 sec
+167/230 Test #170: pyRascalMCES ...........................***Exception: SegFault  2.78 sec
 
 test 171
         Start 171: testCIPLabeler
@@ -37079,26 +36941,26 @@
 171: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler/testCIPLabeler
 171: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler
 171: Test timeout computed to be: 1500
-171: Randomness seeded to: 3781279880
-171: [19:25:19] non kekulizable aromatic bond being treated as bond order 1
-171: [19:25:19] non kekulizable aromatic bond being treated as bond order 1
-171: [19:25:19] non kekulizable aromatic bond being treated as bond order 1
-171: [19:25:19] non kekulizable aromatic bond being treated as bond order 1
-171: [19:25:19] non kekulizable aromatic bond being treated as bond order 1
-171: [19:25:19] non kekulizable aromatic bond being treated as bond order 1
-171: [19:25:22] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
-171: [19:25:22] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+171: Randomness seeded to: 1551686342
+171: [02:09:02] non kekulizable aromatic bond being treated as bond order 1
+171: [02:09:02] non kekulizable aromatic bond being treated as bond order 1
+171: [02:09:02] non kekulizable aromatic bond being treated as bond order 1
+171: [02:09:02] non kekulizable aromatic bond being treated as bond order 1
+171: [02:09:02] non kekulizable aromatic bond being treated as bond order 1
+171: [02:09:02] non kekulizable aromatic bond being treated as bond order 1
+171: [02:09:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
+171: [02:09:03] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored
 171: ===============================================================================
 171: All tests passed (6572 assertions in 18 test cases)
 171: 
-167/230 Test #171: testCIPLabeler .........................   Passed    3.67 sec
+168/230 Test #171: testCIPLabeler .........................   Passed    1.78 sec
 test 172
         Start 172: pyCIPLabelsWrapTest
 
 172: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelWrapTest.py"
 172: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler/Wrap
 172: Test timeout computed to be: 1500
-168/230 Test #172: pyCIPLabelsWrapTest ....................***Exception: SegFault  3.96 sec
+169/230 Test #172: pyCIPLabelsWrapTest ....................***Exception: SegFault  2.19 sec
 
 test 173
         Start 173: pyCIPLabelsValidation
@@ -37106,7 +36968,7 @@
 173: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelsValidation.py"
 173: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/CIPLabeler/Wrap
 173: Test timeout computed to be: 1500
-169/230 Test #173: pyCIPLabelsValidation ..................***Exception: SegFault  3.11 sec
+170/230 Test #173: pyCIPLabelsValidation ..................***Exception: SegFault  2.51 sec
 
 test 174
         Start 174: deprotectTest
@@ -37114,19 +36976,18 @@
 174: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect/deprotectTest
 174: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect
 174: Test timeout computed to be: 1500
-168: Timed out after 121 seconds.
-174: Randomness seeded to: 909922241
+174: Randomness seeded to: 4181358824
 174: ===============================================================================
 174: All tests passed (111 assertions in 3 test cases)
 174: 
-170/230 Test #174: deprotectTest ..........................   Passed    1.77 sec
+171/230 Test #174: deprotectTest ..........................   Passed    0.61 sec
 test 175
         Start 175: pyDeprotect
 
 175: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Deprotect/Wrap/rough_test.py"
 175: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Deprotect/Wrap
 175: Test timeout computed to be: 1500
-171/230 Test #175: pyDeprotect ............................***Exception: SegFault  3.58 sec
+172/230 Test #175: pyDeprotect ............................***Exception: SegFault  2.58 sec
 
 test 176
         Start 176: testReducedGraphs
@@ -37152,14 +37013,14 @@
 176: 
 176: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
 176: 
-172/230 Test #176: testReducedGraphs ......................   Passed    0.49 sec
+173/230 Test #176: testReducedGraphs ......................   Passed    0.22 sec
 test 177
         Start 177: pyReducedGraphs
 
 177: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py"
 177: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap
 177: Test timeout computed to be: 1500
-173/230 Test #177: pyReducedGraphs ........................***Exception: SegFault  3.28 sec
+174/230 Test #177: pyReducedGraphs ........................***Exception: SegFault  1.29 sec
 
 test 178
         Start 178: trajectoryTest
@@ -37167,470 +37028,466 @@
 178: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory/trajectoryTest
 178: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Trajectory
 178: Test timeout computed to be: 1500
-174/230 Test #178: trajectoryTest .........................   Passed    6.57 sec
+175/230 Test #178: trajectoryTest .........................   Passed    0.95 sec
 test 179
         Start 179: substructLibraryTest
 
 179: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/substructLibraryTest
 179: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary
 179: Test timeout computed to be: 1500
-179: [19:25:46] -------------------------------------
-179: [19:25:46]     Test1
-179: [19:25:48]   done
-179: [19:25:48] -------------------------------------
-179: [19:25:48]     Test2
-179: [19:25:52]   done
-179: [19:25:52] -------------------------------------
-179: [19:25:52]     Test3 (stereo options)
-179: [19:25:52]     Done (stereo options)
-179: [19:25:52] -------------------------------------
-179: [19:25:52]     Test4 (trusted smiles)
-179: [19:25:52]     Done (trusted smiles)
-179: [19:25:52] -------------------------------------
-179: [19:25:52]     Testing C++ docs
-179: [19:25:52]     Done (C++ doc tests)
-179: [19:25:52] -------------------------------------
-179: [19:25:52]     Testing C++ ring query: PatternHolder
-179: [19:25:53]     Done (C++ ring query tests)
-179: [19:25:53] -------------------------------------
-179: [19:25:53]     Testing C++ ring query: TautomerPatternHolder
-179: [19:25:53]     Done (C++ ring query tests)
-179: [19:25:53] -------------------------------------
-179: [19:25:53]    Add Patterns 
-179: [19:26:11] -------------------------------------
-179: [19:26:11]    testing PatternHolder
-179: [19:26:12] -------------------------------------
-179: [19:26:12]    testing TautomerPatternHolder
-179: [19:26:14] -------------------------------------
-179: [19:26:14]    testSegFaultInHolder
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'[19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf'[19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] 
-179: SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179:  for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:14] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:14] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'[19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: 
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf'[19:26:15]  for input: 'dsafsdfSMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: '
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] SMILES Parse Error: syntax error while parsing: dsafsdf
-179: [19:26:15] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
-179: [19:26:15] -------------------------------------
-179: [19:26:15]    Results do not depend on numThreads 
-179: [19:27:08] -------------------------------------
-179: [19:27:08]    Results do not depend on numThreads (all same) 
-179: [19:27:09] -------------------------------------
-179: [19:27:09]    testTautomerQueries
-179: [19:27:09] Pattern fingerprints for tautomersearch aren't tautomer fingerprints, ignoring...
-179: [19:27:09] -------------------------------------
-179: [19:27:09]   github3881 recursive smarts with rings 
-175/230 Test #179: substructLibraryTest ...................   Passed   83.77 sec
+179: [02:09:14] -------------------------------------
+179: [02:09:14]     Test1
+179: [02:09:14]   done
+179: [02:09:14] -------------------------------------
+179: [02:09:14]     Test2
+179: [02:09:15]   done
+179: [02:09:16] -------------------------------------
+179: [02:09:16]     Test3 (stereo options)
+179: [02:09:16]     Done (stereo options)
+179: [02:09:16] -------------------------------------
+179: [02:09:16]     Test4 (trusted smiles)
+179: [02:09:16]     Done (trusted smiles)
+179: [02:09:16] -------------------------------------
+179: [02:09:16]     Testing C++ docs
+179: [02:09:16]     Done (C++ doc tests)
+179: [02:09:16] -------------------------------------
+179: [02:09:16]     Testing C++ ring query: PatternHolder
+179: [02:09:16]     Done (C++ ring query tests)
+179: [02:09:16] -------------------------------------
+179: [02:09:16]     Testing C++ ring query: TautomerPatternHolder
+179: [02:09:16]     Done (C++ ring query tests)
+179: [02:09:16] -------------------------------------
+179: [02:09:16]    Add Patterns 
+5: [02:09:26] Finished: testMultipleTimes() 
+5: [02:09:26] 
+5: -----------------------------------------
+176/230 Test   #5: testConcurrentQueue ....................   Passed  689.32 sec
 test 180
         Start 180: substructLibraryCatchTest
 
 180: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/substructLibraryCatchTest
 180: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary
 180: Test timeout computed to be: 1500
-180: Randomness seeded to: 2010132391
+180: Randomness seeded to: 3059465905
 180: ===============================================================================
 180: All tests passed (171 assertions in 5 test cases)
 180: 
-176/230 Test #180: substructLibraryCatchTest ..............   Passed    3.91 sec
+177/230 Test #180: substructLibraryCatchTest ..............   Passed    1.24 sec
 test 181
         Start 181: pySubstructLibrary
 
 181: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/SubstructLibrary/Wrap/rough_test.py"
 181: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SubstructLibrary/Wrap
 181: Test timeout computed to be: 1500
-177/230 Test #181: pySubstructLibrary .....................***Exception: SegFault  4.53 sec
+179: [02:09:28] -------------------------------------
+179: [02:09:28]    testing PatternHolder
+179: [02:09:29] -------------------------------------
+179: [02:09:29]    testing TautomerPatternHolder
+179: [02:09:29] -------------------------------------
+179: [02:09:29]    testSegFaultInHolder
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:29] SMILES Parse Error: syntax error while parsing: dsafsdf
+179: [02:09:29] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf'
+179: [02:09:30] -------------------------------------
+179: [02:09:30]    Results do not depend on numThreads 
+178/230 Test #181: pySubstructLibrary .....................***Exception: SegFault  2.11 sec
 
 test 182
         Start 182: testRGroupDecomp
@@ -37638,58 +37495,66 @@
 182: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/testRGroupDecomp
 182: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition
 182: Test timeout computed to be: 1500
-168: ===============================================================================
-168: All tests passed (2923 assertions in 27 test cases)
-168: 
-178/230 Test #168: testRascalMCES .........................   Passed  317.03 sec
+182: [02:09:32] Non terminal R group defined.  To allow set allowNonTerminalRGroups in RGroupDecompositionParameters
+182: [02:09:32] WARNING: not removing hydrogen atom with dummy atom neighbors
+182: iterative
+179: [02:09:47] -------------------------------------
+179: [02:09:47]    Results do not depend on numThreads (all same) 
+182: bulk
+179: [02:09:48] -------------------------------------
+179: [02:09:48]    testTautomerQueries
+179: [02:09:48] Pattern fingerprints for tautomersearch aren't tautomer fingerprints, ignoring...
+179: [02:09:48] -------------------------------------
+179: [02:09:48]   github3881 recursive smarts with rings 
+179/230 Test #179: substructLibraryTest ...................   Passed   34.47 sec
 test 183
         Start 183: testRGroupDecompInternals
 
 183: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/testRGroupDecompInternals
 183: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition
 183: Test timeout computed to be: 1500
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-183: [19:27:23] WARNING: not removing hydrogen atom with dummy atom neighbors
-179/230 Test #183: testRGroupDecompInternals ..............   Passed    0.54 sec
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+183: [02:09:48] WARNING: not removing hydrogen atom with dummy atom neighbors
+180/230 Test #183: testRGroupDecompInternals ..............   Passed    0.27 sec
 test 184
         Start 184: rgroupCatchTests
 
 184: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/rgroupCatchTests
 184: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition
 184: Test timeout computed to be: 1500
-182: [19:27:24] Non terminal R group defined.  To allow set allowNonTerminalRGroups in RGroupDecompositionParameters
-182: [19:27:24] WARNING: not removing hydrogen atom with dummy atom neighbors
-184: Randomness seeded to: 413978194
+182: bulk, no symmetry
+168: Timed out after 121 seconds.
+184: Randomness seeded to: 2200554308
 184: ===============================================================================
 184: All tests passed (1475 assertions in 14 test cases)
 184: 
-180/230 Test #184: rgroupCatchTests .......................   Passed    5.85 sec
+181/230 Test #184: rgroupCatchTests .......................   Passed    4.03 sec
 test 185
         Start 185: pyRGroupDecomposition
 
 185: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py"
 185: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/RGroupDecomposition/Wrap
 185: Test timeout computed to be: 1500
-181/230 Test #185: pyRGroupDecomposition ..................***Exception: SegFault  4.51 sec
+182/230 Test #185: pyRGroupDecomposition ..................***Exception: SegFault  1.93 sec
 
 test 186
         Start 186: molInterchangeTest1
@@ -37697,51 +37562,52 @@
 186: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange/molInterchangeTest1
 186: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange
 186: Test timeout computed to be: 1500
-186: [19:27:34] test1: basics
-186: [19:27:34] done
-186: [19:27:34] test2: basic writing
+182: [02:09:54] Relabelling existing label
+186: [02:09:55] test1: basics
+186: [02:09:55] done
+186: [02:09:55] test2: basic writing
 186: {"rdkitjson":{"version":11},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"mol1 name","atoms":[{"impHs":3},{"impHs":3}],"bonds":[{"atoms":[0,1]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2024.09.2","cipRanks":[0,0]}]}]}
 186: {"rdkitjson":{"version":11},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"test mol","atoms":[{"z":9},{"stereo":"cw"},{"z":17},{"z":8,"impHs":1},{"impHs":3}],"bonds":[{"atoms":[0,1]},{"atoms":[1,2]},{"atoms":[1,3]},{"atoms":[1,4]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2024.09.2","cipRanks":[3,1,4,2,0],"cipCodes":[[1,"S"]]}]}]}
 186: {"rdkitjson":{"version":11},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"test mol","atoms":[{"impHs":1},{"impHs":1},{"impHs":1},{"impHs":1},{"impHs":1},{"impHs":1}],"bonds":[{"bo":2,"atoms":[0,1]},{"atoms":[1,2]},{"bo":2,"atoms":[2,3]},{"atoms":[3,4]},{"bo":2,"atoms":[4,5]},{"atoms":[5,0]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2024.09.2","aromaticAtoms":[0,1,2,3,4,5],"aromaticBonds":[0,1,2,3,4,5],"cipRanks":[0,0,0,0,0,0],"atomRings":[[0,5,4,3,2,1]]}]}]}
 186: {"rdkitjson":{"version":11},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"test mol","atoms":[{"impHs":3},{"impHs":2},{},{},{"z":7,"impHs":2},{"impHs":1},{},{"impHs":3},{"z":7},{"impHs":1}],"bonds":[{"atoms":[0,1]},{"atoms":[1,2]},{"bo":2,"atoms":[2,3]},{"atoms":[3,4]},{"atoms":[3,5]},{"bo":2,"atoms":[5,6]},{"atoms":[6,7]},{"atoms":[6,8]},{"bo":2,"atoms":[8,9]},{"atoms":[9,2]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2024.09.2","aromaticAtoms":[2,3,5,6,8,9],"aromaticBonds":[2,4,5,7,8,9],"cipRanks":[0,2,4,5,8,3,7,1,9,6],"atomRings":[[2,9,8,6,5,3]]}]}]}
-186: [19:27:34] done
-186: [19:27:34] test3: writing conformers
+186: [02:09:55] done
+186: [02:09:55] test3: writing conformers
 186: {"rdkitjson":{"version":11},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"example 2","atoms":[{"z":8},{"stereo":"cw"},{"z":17,"isotope":35},{"z":9},{"z":1},{"z":1}],"bonds":[{"atoms":[0,1]},{"atoms":[1,2]},{"atoms":[1,3]},{"atoms":[0,4]},{"atoms":[1,5]}],"conformers":[{"dim":2,"coords":[[-1.1987,-0.0452],[-0.3332,0.4555],[0.1659,1.322],[0.5332,-0.0438],[-2.0652,0.4541],[-0.8339,1.3212]]},{"dim":3,"coords":[[0.9553,-0.3743,-0.4679],[-0.3616,-0.131,-0.0794],[-0.5097,1.6255,0.1705],[-0.5778,-0.7919,1.1042],[1.5276,0.1063,0.1627],[-1.0339,-0.4345,-0.8902]]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2024.09.2","cipCodes":[[1,"S"]]},{"name":"partialCharges","generator":"RDKit","formatVersion":10,"generatorVersion":"2024.09.2","values":[-0.352,0.273,-0.055,-0.198,0.215,0.117]}]}]}
-186: [19:27:34] done
-186: [19:27:34] test4: writing properties
+186: [02:09:55] done
+186: [02:09:55] test4: writing properties
 186: {"rdkitjson":{"version":11},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"atoms":[{"impHs":3},{"impHs":3}],"bonds":[{"atoms":[0,1]}],"properties":{"foo_string":"bar","foo_int":1,"foo_double":1.2},"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2024.09.2","cipRanks":[0,0]}]}]}
-186: [19:27:34] done
-186: [19:27:34] test5: writing partial charges
+186: [02:09:55] done
+186: [02:09:55] test5: writing partial charges
 186: {"rdkitjson":{"version":11},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"atoms":[{"impHs":3},{"z":8,"impHs":1}],"bonds":[{"atoms":[0,1]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2024.09.2","cipRanks":[0,1]},{"name":"partialCharges","generator":"RDKit","formatVersion":10,"generatorVersion":"2024.09.2","values":[0.5,-0.5]}]}]}
-186: [19:27:34] testing parse options
-186: [19:27:34] done
-186: [19:27:34] testing github #2046: CIPRank values from JSONDataToMols are not unsigned
+186: [02:09:55] testing parse options
+186: [02:09:55] done
+186: [02:09:55] testing github #2046: CIPRank values from JSONDataToMols are not unsigned
 186: {"rdkitjson":{"version":11},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"test mol","atoms":[{"impHs":2},{"impHs":2},{"impHs":2},{"z":8},{"impHs":1,"stereo":"cw"},{"z":9}],"bonds":[{"atoms":[0,1]},{"atoms":[1,2]},{"atoms":[2,3]},{"atoms":[3,4]},{"atoms":[4,5]},{"atoms":[4,0]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2024.09.2","cipRanks":[1,0,2,4,3,5],"cipCodes":[[4,"S"]],"atomRings":[[0,1,2,3,4]]}]}]}
-186: [19:27:34] done
-186: [19:27:34] testing 'either' stereochemistry
-186: [19:27:34] done
-182/230 Test #186: molInterchangeTest1 ....................   Passed    0.41 sec
+186: [02:09:55] done
+186: [02:09:55] testing 'either' stereochemistry
+186: [02:09:55] done
+183/230 Test #186: molInterchangeTest1 ....................   Passed    1.15 sec
 test 187
         Start 187: molInterchangeCatchTest
 
 187: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange/molInterchangeCatchTest
 187: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange
 187: Test timeout computed to be: 1500
-187: Randomness seeded to: 1380081233
-187: [19:27:34]  unrecognized bond type 12 set to zero while writing
-187: [19:27:34]  unrecognized bond type 0 set to zero while writing
+182: Best mapping
+187: Randomness seeded to: 705603982
+187: [02:09:56]  unrecognized bond type 12 set to zero while writing
+187: [02:09:56]  unrecognized bond type 0 set to zero while writing
 187: ===============================================================================
 187: All tests passed (122 assertions in 6 test cases)
 187: 
-183/230 Test #187: molInterchangeCatchTest ................   Passed    0.44 sec
+184/230 Test #187: molInterchangeCatchTest ................   Passed    1.01 sec
 test 188
         Start 188: pyMolInterchange
 
 188: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolInterchange/Wrap/testMolInterchange.py"
 188: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolInterchange/Wrap
 188: Test timeout computed to be: 1500
-184/230 Test #188: pyMolInterchange .......................***Exception: SegFault  3.25 sec
-
+185/230 Test #182: testRGroupDecomp .......................   Passed   27.21 sec
 test 189
         Start 189: testSLNParse
 
@@ -37761,28 +37627,28 @@
 189: 	2 0->3 order: 1
 189: 	3 0->4 order: 1
 189: 	4 0->5 order: 1
-189: [19:27:38] SLN Parse Error: syntax error while parsing: CH4[I=13]
-189: [19:27:38] Failed parsing SLN 'CH4[I=13]'
-189: [19:27:38] SLN Parser error: Atom ID 1 appears *after* its ring closure.
-189: [19:27:38] SLN Parser error: Ring closure 1 does not have a corresponding opener.
-189: [19:27:38] SLN Parse Error: syntax error while parsing: CH2(C@1H2)CH2(CH2CH2C[1]H2)
-189: [19:27:38] Failed parsing SLN 'CH2(C@1H2)CH2(CH2CH2C[1]H2)'
-189: [19:27:38] SLN Parse Error: syntax error while parsing: CH2(CH2[1])CH2(CH2CH2CH2@1)
-189: [19:27:38] Failed parsing SLN 'CH2(CH2[1])CH2(CH2CH2CH2@1)'
-189: [19:27:38] SLN Parse Error: syntax error while parsing: CH4	fff
-189: [19:27:38] Failed parsing SLN 'CH4	fff'
-189: [19:27:38] SLN Parse Error: syntax error while parsing: C[charge=+1] 	foo
-189: [19:27:38] Failed parsing SLN 'C[charge=+1] 	foo'
-189: [19:27:38] Query property 'is' ignored on non-query atom
-189: [19:27:38] Query property 'is' ignored on non-query atom
-185/230 Test #189: testSLNParse ...........................   Passed    0.50 sec
+189: [02:09:57] SLN Parse Error: syntax error while parsing: CH4[I=13]
+189: [02:09:57] Failed parsing SLN 'CH4[I=13]'
+189: [02:09:57] SLN Parser error: Atom ID 1 appears *after* its ring closure.
+189: [02:09:57] SLN Parser error: Ring closure 1 does not have a corresponding opener.
+189: [02:09:57] SLN Parse Error: syntax error while parsing: CH2(C@1H2)CH2(CH2CH2C[1]H2)
+189: [02:09:57] Failed parsing SLN 'CH2(C@1H2)CH2(CH2CH2C[1]H2)'
+189: [02:09:57] SLN Parse Error: syntax error while parsing: CH2(CH2[1])CH2(CH2CH2CH2@1)
+189: [02:09:57] Failed parsing SLN 'CH2(CH2[1])CH2(CH2CH2CH2@1)'
+189: [02:09:57] SLN Parse Error: syntax error while parsing: CH4	fff
+189: [02:09:57] Failed parsing SLN 'CH4	fff'
+189: [02:09:57] SLN Parse Error: syntax error while parsing: C[charge=+1] 	foo
+189: [02:09:57] Failed parsing SLN 'C[charge=+1] 	foo'
+189: [02:09:58] Query property 'is' ignored on non-query atom
+189: [02:09:58] Query property 'is' ignored on non-query atom
+186/230 Test #189: testSLNParse ...........................   Passed    0.49 sec
 test 190
         Start 190: pySLNParse
 
 190: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/SLNParse/Wrap/testSLN.py"
 190: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/Wrap
 190: Test timeout computed to be: 1500
-186/230 Test #190: pySLNParse .............................***Exception: SegFault  2.76 sec
+187/230 Test #188: pyMolInterchange .......................***Exception: SegFault  3.64 sec
 
 test 191
         Start 191: pyGraphMolWrap
@@ -37790,7 +37656,7 @@
 191: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/rough_test.py"
 191: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap
 191: Test timeout computed to be: 1500
-187/230 Test #191: pyGraphMolWrap .........................***Exception: SegFault  6.22 sec
+188/230 Test #190: pySLNParse .............................***Exception: SegFault  2.53 sec
 
 test 192
         Start 192: pyTestConformerWrap
@@ -37798,7 +37664,7 @@
 192: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/testConformer.py"
 192: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap
 192: Test timeout computed to be: 1500
-188/230 Test #192: pyTestConformerWrap ....................***Exception: SegFault  3.73 sec
+189/230 Test #192: pyTestConformerWrap ....................***Exception: SegFault  1.96 sec
 
 test 193
         Start 193: pyTestTrajectory
@@ -37806,7 +37672,7 @@
 193: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/testTrajectory.py"
 193: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap
 193: Test timeout computed to be: 1500
-189/230 Test #193: pyTestTrajectory .......................***Exception: SegFault  3.77 sec
+190/230 Test #191: pyGraphMolWrap .........................***Exception: SegFault  2.94 sec
 
 test 194
         Start 194: pyTestSGroups
@@ -37814,8 +37680,7 @@
 194: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/testSGroups.py"
 194: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap
 194: Test timeout computed to be: 1500
-182: iterative
-190/230 Test #194: pyTestSGroups ..........................***Exception: SegFault  4.46 sec
+191/230 Test #193: pyTestTrajectory .......................***Exception: SegFault  1.49 sec
 
 test 195
         Start 195: pyTestThreads
@@ -37823,7 +37688,7 @@
 195: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/testThreads.py"
 195: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap
 195: Test timeout computed to be: 1500
-191/230 Test #195: pyTestThreads ..........................***Exception: SegFault  2.70 sec
+192/230 Test #194: pyTestSGroups ..........................***Exception: SegFault  1.07 sec
 
 test 196
         Start 196: pyTestMultithreadedMolSupplier
@@ -37831,7 +37696,7 @@
 196: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/testMultithreadedMolSupplier.py"
 196: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap
 196: Test timeout computed to be: 1500
-192/230 Test #196: pyTestMultithreadedMolSupplier .........***Exception: SegFault  2.37 sec
+193/230 Test #195: pyTestThreads ..........................***Exception: SegFault  1.19 sec
 
 test 197
         Start 197: pyTestPropertyLists
@@ -37839,7 +37704,7 @@
 197: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/testPropertyLists.py"
 197: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap
 197: Test timeout computed to be: 1500
-193/230 Test #197: pyTestPropertyLists ....................***Exception: SegFault  2.60 sec
+194/230 Test #196: pyTestMultithreadedMolSupplier .........***Exception: SegFault  1.54 sec
 
 test 198
         Start 198: pyCDXMLTest
@@ -37847,8 +37712,7 @@
 198: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Wrap/test_cdxml.py"
 198: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap
 198: Test timeout computed to be: 1500
-182: bulk
-194/230 Test #198: pyCDXMLTest ............................***Exception: SegFault  4.10 sec
+195/230 Test #197: pyTestPropertyLists ....................***Exception: SegFault  1.60 sec
 
 test 199
         Start 199: molStandardizeTest
@@ -37856,25 +37720,23 @@
 199: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/molStandardizeTest
 199: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize
 199: Test timeout computed to be: 1500
-182: bulk, no symmetry
-144: [19:28:20]   done
-182: [19:28:26] Relabelling existing label
-195/230 Test #199: molStandardizeTest .....................   Passed   15.04 sec
+196/230 Test #198: pyCDXMLTest ............................***Exception: SegFault  1.57 sec
+
 test 200
         Start 200: molNormalizeTest
 
 200: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/molNormalizeTest
 200: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize
 200: Test timeout computed to be: 1500
-200: [19:28:27] Can't kekulize mol.  Unkekulized atoms: 3 7 8 9
-200: [19:28:28] Initializing Normalizer
-200: [19:28:28] Running Normalizer
-200: [19:28:28] Rule applied: BrokenazidetoN=N+=N-
-200: [19:28:28] Initializing Normalizer
-200: [19:28:28] Running Normalizer
-200: [19:28:28] Initializing Normalizer
-200: [19:28:28] Running Normalizer
-196/230 Test #200: molNormalizeTest .......................   Passed    2.11 sec
+200: [02:10:07] Can't kekulize mol.  Unkekulized atoms: 3 7 8 9
+200: [02:10:08] Initializing Normalizer
+200: [02:10:08] Running Normalizer
+200: [02:10:08] Rule applied: BrokenazidetoN=N+=N-
+200: [02:10:08] Initializing Normalizer
+200: [02:10:08] Running Normalizer
+200: [02:10:08] Initializing Normalizer
+200: [02:10:08] Running Normalizer
+197/230 Test #200: molNormalizeTest .......................   Passed    0.41 sec
 test 201
         Start 201: molValidateTest
 
@@ -37899,80 +37761,75 @@
 201: ERROR: [StereoValidation] Bond 3 has assigned stereo type, but unexpected bond order.
 201: there
 201: ERROR: [StereoValidation] Atom 0 has stereo bonds, but less than 3 explicit substituents.
-197/230 Test #201: molValidateTest ........................   Passed    0.59 sec
+198/230 Test #201: molValidateTest ........................   Passed    0.24 sec
 test 202
         Start 202: molChargeTest
 
 202: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/molChargeTest
 202: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize
 202: Test timeout computed to be: 1500
-198/230 Test #202: molChargeTest ..........................   Passed    1.02 sec
+199/230 Test #202: molChargeTest ..........................   Passed    0.56 sec
 test 203
         Start 203: molTautomerTest
 
 203: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/molTautomerTest
 203: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize
 203: Test timeout computed to be: 1500
-182: Best mapping
-199/230 Test #182: testRGroupDecomp .......................   Passed   75.20 sec
+203: [02:10:11] Tautomer enumeration stopped at 292 tautomers: max transforms reached
+200/230 Test #199: molStandardizeTest .....................   Passed    6.16 sec
 test 204
         Start 204: molStandardizeSmallTest
 
 204: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/molStandardizeSmallTest
 204: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize
 204: Test timeout computed to be: 1500
-200/230 Test #204: molStandardizeSmallTest ................   Passed    0.44 sec
+201/230 Test #204: molStandardizeSmallTest ................   Passed    0.19 sec
 test 205
         Start 205: molFragmentTest
 
 205: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/molFragmentTest
 205: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize
 205: Test timeout computed to be: 1500
-205: [19:28:34] SMARTS Parse Error: syntax error while parsing: [Cl
-205: [19:28:34] SMARTS Parse Error: Failed parsing SMARTS '[Cl' for input: '[Cl'
-201/230 Test #205: molFragmentTest ........................   Passed    0.63 sec
+205: [02:10:13] SMARTS Parse Error: syntax error while parsing: [Cl
+205: [02:10:13] SMARTS Parse Error: Failed parsing SMARTS '[Cl' for input: '[Cl'
+202/230 Test #205: molFragmentTest ........................   Passed    0.30 sec
 test 206
         Start 206: molStandardizeCatchTest
 
 206: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/molStandardizeCatchTest
 206: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize
 206: Test timeout computed to be: 1500
-206: Randomness seeded to: 422010498
+203: [02:10:14] Tautomer enumeration stopped at 292 tautomers: max transforms reached
+206: Randomness seeded to: 4259359940
 206:  * - * - * - * m1
 206:  * - * - * - * m2
 206:  * - * - * - * m1
 206:  * - * - * - * m2
-206: [19:28:38] Can't kekulize mol.  Unkekulized atoms: 3 7
-206: [19:28:38] Can't kekulize mol.  Unkekulized atoms: 3 8
-203: [19:28:38] Tautomer enumeration stopped at 292 tautomers: max transforms reached
-206: [19:28:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4
-203: [19:28:43] Tautomer enumeration stopped at 292 tautomers: max transforms reached
-203: [19:28:43] Tautomer enumeration stopped at 50 tautomers: max tautomers reached
-203: [19:28:45] Tautomer enumeration stopped at 6 tautomers: canceled
+206: [02:10:14] Can't kekulize mol.  Unkekulized atoms: 3 7
+206: [02:10:14] Can't kekulize mol.  Unkekulized atoms: 3 8
+206: [02:10:14] Can't kekulize mol.  Unkekulized atoms: 2 3 4
+203: [02:10:14] Tautomer enumeration stopped at 50 tautomers: max tautomers reached
+203: [02:10:16] Tautomer enumeration stopped at 22 tautomers: canceled
 203: Enumeration was canceled due to timeout (50 ms)
 203: 375
 203: Enumeration has completed
-203: [19:28:53] Tautomer enumeration stopped at 11 tautomers: canceled
-203: CN=c1cc[nH]cn1
-203: CN=c1ccnc[nH]1
-203: CNc1ccncn1
-203: res: CNc1ccncn1
-203: CN=c1cccc[nH]1
-203: CNc1ccccn1
-203: res: CNc1ccccn1
-202/230 Test #203: molTautomerTest ........................   Passed   38.39 sec
+203: [02:10:19] Tautomer enumeration stopped at 28 tautomers: canceled
+168: ===============================================================================
+168: All tests passed (2923 assertions in 27 test cases)
+168: 
+203/230 Test #168: testRascalMCES .........................   Passed  233.46 sec
 test 207
         Start 207: molStandardizePipelineTest
 
 207: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/molStandardizePipelineTest
 207: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize
 207: Test timeout computed to be: 1500
-207: Randomness seeded to: 430884608
+207: Randomness seeded to: 3800455310
 207: 1 Counts line too short: '' on line4
 207: 1 Could not instantiate a valid molecule from input
 207: 8 Molecule has no atoms
-207: [19:29:09] Explicit valence for atom # 1 N, 4, is greater than permitted
-207: [19:29:09] Explicit valence for atom # 1 N, 4, is greater than permitted
+207: [02:10:21] Explicit valence for atom # 1 N, 4, is greater than permitted
+207: [02:10:21] Explicit valence for atom # 1 N, 4, is greater than permitted
 207: 8 Explicit valence for atom # 1 N, 4, is greater than permitted
 207: 128 An error occurred while preparing the molecule for standardization.
 207: 8 The molecule contains an unknown isotope: 3C
@@ -37987,13 +37844,13 @@
 207: 4 Bond 3 of dative type is not allowed
 207: 4 Enhanced stereochemistry features are not allowed
 207: 8 The radical at atom 0 is not allowed
-207: [19:29:09] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+207: [02:10:21] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
 207: 16 The molecule includes non-null Z coordinates
 207: 32 Atom 0 too close to bond 2
 207: 32 The length of bond 3 between atoms 0 and 3 exceeds a configured limit
 207: 64 Atom 0 has 3 explicit substituents and multiple stereo bonds
 207: 64 Atom 0 has adjacent stereo bonds with like orientation
-207: [19:29:09] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
+207: [02:10:21] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D.
 207: 16 The molecule includes non-null Z coordinates
 207: 64 Atom 0 has adjacent stereo bonds with like orientation
 207: 32 The length of bond 16 between atoms 16 and 1 exceeds a configured limit
@@ -38039,18 +37896,18 @@
 207: 16777216 Double bond 2 was assigned an undefined/unknown stereochemical configuration
 207: 16777216 The "wavy" style of bond 3 was removed
 207: 16777216 The representation of some functional groups was adjusted.
-207: [19:29:11] Can't kekulize mol.  Unkekulized atoms: 2 3 5
+207: [02:10:22] Can't kekulize mol.  Unkekulized atoms: 2 3 5
 207: ===============================================================================
 207: All tests passed (268 assertions in 5 test cases)
 207: 
-203/230 Test #207: molStandardizePipelineTest .............   Passed    2.74 sec
+204/230 Test #207: molStandardizePipelineTest .............   Passed    1.07 sec
 test 208
         Start 208: pyMolStandardize
 
 208: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolStandardize/Wrap/testMolStandardize.py"
 208: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolStandardize/Wrap
 208: Test timeout computed to be: 1500
-204/230 Test #208: pyMolStandardize .......................***Exception: SegFault  2.19 sec
+205/230 Test #208: pyMolStandardize .......................***Exception: SegFault  2.56 sec
 
 test 209
         Start 209: testScaffoldNetwork
@@ -38058,30 +37915,21 @@
 209: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork/testScaffoldNetwork
 209: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork
 209: Test timeout computed to be: 1500
-144: [19:28:20] 	---------------------------------
-144: [19:28:20] 	 test github issue 256: handling of zero-atom molecules
-144: 
-144: [19:28:20] 	---------------------------------
-144: [19:28:20] 	 test embedder callback function 
-144: [19:28:20] 	---------------------------------
-144: [19:28:20] 	 test multi-threaded multi-conf embedding 
-144: 
-144: [19:29:16] 	---------------------------------
-144: [19:29:16] 	 test github issue 563: Incorrect ring stereochemistry after embedding
-144: 
-144: CNC[C@H]1CC[C@H](C[NH3+])CC1
-209: Randomness seeded to: 3950578186
-209: ===============================================================================
-209: All tests passed (269 assertions in 19 test cases)
-209: 
-205/230 Test #209: testScaffoldNetwork ....................   Passed   11.75 sec
+203: CN=c1cc[nH]cn1
+203: CN=c1ccnc[nH]1
+203: CNc1ccncn1
+203: res: CNc1ccncn1
+203: CN=c1cccc[nH]1
+203: CNc1ccccn1
+203: res: CNc1ccccn1
+206/230 Test #203: molTautomerTest ........................   Passed   19.36 sec
 test 210
         Start 210: pyScaffoldNetwork
 
 210: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ScaffoldNetwork/Wrap/testScaffoldNetwork.py"
 210: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork/Wrap
 210: Test timeout computed to be: 1500
-206/230 Test #210: pyScaffoldNetwork ......................***Exception: SegFault  2.21 sec
+207/230 Test #210: pyScaffoldNetwork ......................***Exception: SegFault  1.99 sec
 
 test 211
         Start 211: pyScaffoldNetworkPickling
@@ -38089,7 +37937,7 @@
 211: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/ScaffoldNetwork/Wrap/testPickleScaffoldNetwork.py"
 211: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/ScaffoldNetwork/Wrap
 211: Test timeout computed to be: 1500
-207/230 Test #211: pyScaffoldNetworkPickling ..............***Exception: SegFault  1.81 sec
+208/230 Test #211: pyScaffoldNetworkPickling ..............***Exception: SegFault  2.13 sec
 
 test 212
         Start 212: testMolEnumerator
@@ -38097,19 +37945,19 @@
 212: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator/testMolEnumerator
 212: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator
 212: Test timeout computed to be: 1500
-212: Randomness seeded to: 3568159557
-212: [19:29:30] can only enumerate SRUs with CONNECT=HT or CONNECT=HH
+212: Randomness seeded to: 2283489375
+212: [02:10:32] can only enumerate SRUs with CONNECT=HT or CONNECT=HH
 212: ===============================================================================
 212: All tests passed (321 assertions in 16 test cases)
 212: 
-208/230 Test #212: testMolEnumerator ......................   Passed    1.02 sec
+209/230 Test #212: testMolEnumerator ......................   Passed    0.66 sec
 test 213
         Start 213: pyMolEnumerator
 
 213: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolEnumerator/Wrap/rough_test.py"
 213: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolEnumerator/Wrap
 213: Test timeout computed to be: 1500
-209/230 Test #213: pyMolEnumerator ........................***Exception: SegFault  2.22 sec
+210/230 Test #213: pyMolEnumerator ........................***Exception: SegFault  1.60 sec
 
 test 214
         Start 214: testAbbreviations
@@ -38117,71 +37965,59 @@
 214: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations/testAbbreviations
 214: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations
 214: Test timeout computed to be: 1500
-144: [19:29:32] 	---------------------------------
-144: [19:29:32] 	 test github issue 568: Incorrect stereochemistry after embedding
-144: 
-144: C1=NC[C@]2(CN3CC[C@@H]2C3)O1
-214: Randomness seeded to: 2618224417
-214: [19:29:33] SMARTS Parse Error: syntax error while parsing: *fail
-214: [19:29:33] SMARTS Parse Error: Failed parsing SMARTS '*fail' for input: '*fail'
-214: [19:29:33] no suitable SubstanceGroups found
+214: Randomness seeded to: 3865726655
+214: [02:10:34] SMARTS Parse Error: syntax error while parsing: *fail
+214: [02:10:34] SMARTS Parse Error: Failed parsing SMARTS '*fail' for input: '*fail'
+214: [02:10:34] no suitable SubstanceGroups found
 214: ===============================================================================
 214: All tests passed (195 assertions in 12 test cases)
 214: 
-210/230 Test #214: testAbbreviations ......................   Passed    0.42 sec
+211/230 Test #214: testAbbreviations ......................   Passed    0.26 sec
 test 215
         Start 215: pyAbbreviations
 
 215: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/Abbreviations/Wrap/testAbbreviations.py"
 215: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/Abbreviations/Wrap
 215: Test timeout computed to be: 1500
-144: O=C(O)[C@@H]1[C@H](C(=O)O)[C@H]2CC[C@@H]1O2
-211/230 Test #215: pyAbbreviations ........................***Exception: SegFault  2.10 sec
-
+209: Randomness seeded to: 363761546
+209: ===============================================================================
+209: All tests passed (269 assertions in 19 test cases)
+209: 
+212/230 Test #209: testScaffoldNetwork ....................   Passed   10.01 sec
 test 216
         Start 216: generalizedSubstructCatch
 
 216: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct/generalizedSubstructCatch
 216: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct
 216: Test timeout computed to be: 1500
-144: O=C(CCc1ccccc1)OC[C@H]1C[C@@H]2O[C@H]1[C@H]1C(=O)OC(=O)[C@H]12
-216: Randomness seeded to: 1374252
-216: ===============================================================================
-216: All tests passed (486 assertions in 10 test cases)
-216: 
-212/230 Test #216: generalizedSubstructCatch ..............   Passed    2.61 sec
+213/230 Test #215: pyAbbreviations ........................***Exception: SegFault  1.82 sec
+
 test 217
         Start 217: pyGeneralizedSubstruct
 
 217: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/GeneralizedSubstruct/Wrap/testGeneralizedSubstruct.py"
 217: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/GeneralizedSubstruct/Wrap
 217: Test timeout computed to be: 1500
-213/230 Test #217: pyGeneralizedSubstruct .................***Exception: SegFault  2.69 sec
-
+216: Randomness seeded to: 3060544123
+216: ===============================================================================
+216: All tests passed (486 assertions in 10 test cases)
+216: 
+214/230 Test #216: generalizedSubstructCatch ..............   Passed    1.82 sec
 test 218
         Start 218: testMolProcessing
 
 218: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing/testMolProcessing
 218: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing
 218: Test timeout computed to be: 1500
-144: Cn1cc(C2=NC[C@]3(CN4CC[C@@H]3C4)O2)c2ccccc21
-144: Nc1ncnc2c1ncn2[C@@H]1C=C(CO)[C@@H](O)[C@H]1O
-144: CO[C@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
-144: CO[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
-144: CCS[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
-218: Randomness seeded to: 2395818743
-218: ===============================================================================
-218: All tests passed (203 assertions in 1 test case)
-218: 
-214/230 Test #218: testMolProcessing ......................   Passed   27.83 sec
+215/230 Test #217: pyGeneralizedSubstruct .................***Exception: SegFault  2.58 sec
+
 test 219
         Start 219: pyMolProcessing
 
 219: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/GraphMol/MolProcessing/Wrap/testMolProcessing.py"
 219: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/GraphMol/MolProcessing/Wrap
 219: Test timeout computed to be: 1500
-144: CCCCC[C@H](O)/C=C/[C@@]1(F)[C@H](O)C[C@H](O)[C@@H]1C/C=C\CCCC(=O)OC
-215/230 Test #219: pyMolProcessing ........................***Exception: SegFault  1.89 sec
+216/230 Test #219: pyMolProcessing ........................***Exception: SegFault  2.69 sec
 
 test 220
         Start 220: testQuery
@@ -38206,7 +38042,7 @@
 220: XOr
 220: pointer and copy foo
 220: Set2
-216/230 Test #220: testQuery ..............................   Passed    0.04 sec
+217/230 Test #220: testQuery ..............................   Passed    0.71 sec
 test 221
         Start 221: testMatCalc
 
@@ -38258,7 +38094,7 @@
 221: 9.49496e+07
 221: 2.25618e+08
 221: 1.30219e+08
-217/230 Test #221: testMatCalc ............................   Passed    0.05 sec
+218/230 Test #221: testMatCalc ............................   Passed    0.02 sec
 test 222
         Start 222: pyMatCalc
 
@@ -38267,58 +38103,56 @@
 222: Test timeout computed to be: 1500
 222: .....
 222: ----------------------------------------------------------------------
-222: Ran 5 tests in 2.581s
+222: Ran 5 tests in 0.716s
 222: 
 222: OK
-218/230 Test #222: pyMatCalc ..............................   Passed    4.46 sec
+219/230 Test #222: pyMatCalc ..............................   Passed    2.53 sec
 test 223
         Start 223: testSimDivPickers
 
 223: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/testSimDivPickers
 223: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers
 223: Test timeout computed to be: 1500
-223: [19:30:14] -------------------------------------
-223: [19:30:14] Testing github issue 1421: MaxMinPicker picking non-existent element.
-223: [19:30:14] Done
-223: [19:30:14] -------------------------------------
-223: [19:30:14] Testing github issue 2245: MinMax Diversity picker seeding shows deterministic / non-random behaviour.
-223: [19:30:14] Done
-219/230 Test #223: testSimDivPickers ......................   Passed    0.06 sec
+223: [02:10:45] -------------------------------------
+223: [02:10:45] Testing github issue 1421: MaxMinPicker picking non-existent element.
+223: [02:10:45] Done
+223: [02:10:45] -------------------------------------
+223: [02:10:45] Testing github issue 2245: MinMax Diversity picker seeding shows deterministic / non-random behaviour.
+223: [02:10:45] Done
+220/230 Test #223: testSimDivPickers ......................   Passed    0.07 sec
 test 224
         Start 224: pickersTestsCatch
 
 224: Test command: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/pickersTestsCatch
 224: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers
 224: Test timeout computed to be: 1500
-224: Randomness seeded to: 276038164
+224: Randomness seeded to: 1119295728
 224: ===============================================================================
 224: All tests passed (21267 assertions in 1 test case)
 224: 
-220/230 Test #224: pickersTestsCatch ......................   Passed    0.62 sec
+221/230 Test #224: pickersTestsCatch ......................   Passed    0.62 sec
 test 225
         Start 225: pySimDivPickers
 
 225: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/SimDivPickers/Wrap/testPickers.py"
 225: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap
 225: Test timeout computed to be: 1500
-225: [19:30:17] the useCache argument is deprecated and ignored
-225: ...[19:30:19] the useCache argument is deprecated and ignored
-225: [19:30:19] the useCache argument is deprecated and ignored
-225: .[19:30:20] the useCache argument is deprecated and ignored
-144: CCCCC[C@@H](O)/C=C/[C@@]1(F)[C@H](C/C=C\CCCC(=O)OC)[C@H](O)C[C@@H]1O
-225: .......
-225: ----------------------------------------------------------------------
-225: Ran 11 tests in 15.449s
-225: 
-225: OK
-221/230 Test #225: pySimDivPickers ........................   Passed   17.78 sec
+225: [02:10:47] the useCache argument is deprecated and ignored
+225: ...[02:10:48] the useCache argument is deprecated and ignored
+225: [02:10:48] the useCache argument is deprecated and ignored
+225: .[02:10:48] the useCache argument is deprecated and ignored
+218: Randomness seeded to: 1277219440
+218: ===============================================================================
+218: All tests passed (203 assertions in 1 test case)
+218: 
+222/230 Test #218: testMolProcessing ......................   Passed   16.26 sec
 test 226
         Start 226: pyRanker
 
 226: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/ML/InfoTheory/Wrap/testRanker.py"
 226: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap
 226: Test timeout computed to be: 1500
-226: ..[19:30:35] 
+226: ..[02:10:56] 
 226: 
 226: ****
 226: Invariant Violation
@@ -38333,23 +38167,23 @@
 226:  3# RDInfoTheory::getTopNbits(RDInfoTheory::InfoBitRanker*, int) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/rdkit/ML/InfoTheory/rdInfoTheory.so
 226:  4# boost::python::objects::caller_py_function_impl<boost::python::detail::caller<_object* (*)(RDInfoTheory::InfoBitRanker*, int), boost::python::default_call_policies, boost::mpl::vector3<_object*, RDInfoTheory::InfoBitRanker*, int> > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/rdkit/ML/InfoTheory/rdInfoTheory.so
 226:  5# boost::python::objects::function::call(_object*, _object*) const in /lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0
-226:  6# 0xF65798E8 in /lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0
+226:  6# 0xB59168E8 in /lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0
 226:  7# boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const in /lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0
 226:  8# boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<Invar::Invariant, void (*)(Invar::Invariant const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(Invar::Invariant const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/rdkit/rdBase.so
 226:  9# boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<KeyErrorException, void (*)(KeyErrorException const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(KeyErrorException const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/rdkit/rdBase.so
 226: 10# boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ValueErrorException, void (*)(ValueErrorException const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ValueErrorException const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/rdkit/rdBase.so
 226: 11# boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<IndexErrorException, void (*)(IndexErrorException const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(IndexErrorException const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) in /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/rdkit/rdBase.so
 226: 12# boost::python::handle_exception_impl(boost::function0<void>) in /lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0
-226: 13# 0xF6577190 in /lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0
+226: 13# 0xB5914190 in /lib/arm-linux-gnueabihf/libboost_python312.so.1.83.0
 226: ----------
 226: ****
 226: 
 226: ...
 226: ----------------------------------------------------------------------
-226: Ran 5 tests in 0.240s
+226: Ran 5 tests in 0.171s
 226: 
 226: OK
-222/230 Test #226: pyRanker ...............................   Passed    2.60 sec
+223/230 Test #226: pyRanker ...............................   Passed    3.89 sec
 test 227
         Start 227: testChemicalFeatures
 
@@ -38359,14 +38193,14 @@
 227: -----------------------------------------
 227: Test1
 227: Done
-223/230 Test #227: testChemicalFeatures ...................   Passed    0.05 sec
+224/230 Test #227: testChemicalFeatures ...................   Passed    0.03 sec
 test 228
         Start 228: pyFeatures
 
 228: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202409.2/Code/ChemicalFeatures/Wrap/testFeatures.py"
 228: Working Directory: /build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap
 228: Test timeout computed to be: 1500
-224/230 Test #228: pyFeatures .............................***Exception: SegFault  2.33 sec
+225/230 Test #228: pyFeatures .............................***Exception: SegFault  1.44 sec
 
 test 229
         Start 229: pythonProjectTests
@@ -38374,9 +38208,31 @@
 229: Test command: /usr/bin/python3 "-m" "pytest"
 229: Working Directory: /build/reproducible-path/rdkit-202409.2/Projects
 229: Test timeout computed to be: 1500
+225: .......
+225: ----------------------------------------------------------------------
+225: Ran 11 tests in 11.604s
+225: 
+225: OK
+226/230 Test #225: pySimDivPickers ........................   Passed   12.97 sec
+test 230
+        Start 230: pythonSourceTests
+
+230: Test command: /usr/bin/python3 "-m" "pytest"
+230: Working Directory: /build/reproducible-path/rdkit-202409.2/rdkit
+230: Test timeout computed to be: 1500
+230: ImportError while loading conftest '/build/reproducible-path/rdkit-202409.2/rdkit/conftest.py'.
+230: __init__.py:6: in <module>
+230:     from . import rdBase
+230: E   ImportError: cannot import name 'rdBase' from partially initialized module 'rdkit' (most likely due to a circular import) (/build/reproducible-path/rdkit-202409.2/rdkit/__init__.py)
+227/230 Test #230: pythonSourceTests ......................***Failed    4.21 sec
+ImportError while loading conftest '/build/reproducible-path/rdkit-202409.2/rdkit/conftest.py'.
+__init__.py:6: in <module>
+    from . import rdBase
+E   ImportError: cannot import name 'rdBase' from partially initialized module 'rdkit' (most likely due to a circular import) (/build/reproducible-path/rdkit-202409.2/rdkit/__init__.py)
+
 229: Fatal Python error: Segmentation fault
 229: 
-229: Current thread 0xf7af6020 (most recent call first):
+229: Current thread 0xb6d93020 (most recent call first):
 229:   File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
 229:   File "<frozen importlib._bootstrap_external>", line 1289 in create_module
 229:   File "<frozen importlib._bootstrap>", line 813 in module_from_spec
@@ -38433,10 +38289,10 @@
 229:   File "<frozen runpy>", line 198 in _run_module_as_main
 229: 
 229: Extension modules: rdkit.rdBase, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, rdkit.DataStructs.cDataStructs, rdkit.Chem.rdchem, rdkit.Geometry.rdGeometry, rdkit.Chem.rdinchi, rdkit.Chem.rdCIPLabeler (total: 19)
-225/230 Test #229: pythonProjectTests .....................***Exception: SegFault  4.93 sec
+228/230 Test #229: pythonProjectTests .....................***Exception: SegFault  5.17 sec
 Fatal Python error: Segmentation fault
 
-Current thread 0xf7af6020 (most recent call first):
+Current thread 0xb6d93020 (most recent call first):
   File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
   File "<frozen importlib._bootstrap_external>", line 1289 in create_module
   File "<frozen importlib._bootstrap>", line 813 in module_from_spec
@@ -38494,90 +38350,19 @@
 
 Extension modules: rdkit.rdBase, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, rdkit.DataStructs.cDataStructs, rdkit.Chem.rdchem, rdkit.Geometry.rdGeometry, rdkit.Chem.rdinchi, rdkit.Chem.rdCIPLabeler (total: 19)
 
-test 230
-        Start 230: pythonSourceTests
-
-230: Test command: /usr/bin/python3 "-m" "pytest"
-230: Working Directory: /build/reproducible-path/rdkit-202409.2/rdkit
-230: Test timeout computed to be: 1500
-230: ImportError while loading conftest '/build/reproducible-path/rdkit-202409.2/rdkit/conftest.py'.
-230: __init__.py:6: in <module>
-230:     from . import rdBase
-230: E   ImportError: cannot import name 'rdBase' from partially initialized module 'rdkit' (most likely due to a circular import) (/build/reproducible-path/rdkit-202409.2/rdkit/__init__.py)
-226/230 Test #230: pythonSourceTests ......................***Failed    2.91 sec
-ImportError while loading conftest '/build/reproducible-path/rdkit-202409.2/rdkit/conftest.py'.
-__init__.py:6: in <module>
-    from . import rdBase
-E   ImportError: cannot import name 'rdBase' from partially initialized module 'rdkit' (most likely due to a circular import) (/build/reproducible-path/rdkit-202409.2/rdkit/__init__.py)
-
-144: CNC(=O)Oc1cccc2c1OC[C@@H]1CCN(C)[C@H]21
-144: CNC(=O)Oc1ccc2c(c1)[C@@H]1[C@@H](CCN1C)CO2
-144: CN1CC[C@H]2COc3c(O)cccc3[C@H]21
-144: CC(=O)C[C@@]12CCC[C@H]1[C@@H]1CCC3=CC(=O)CC[C@@H]3[C@H]1CC2
-144: O=C(O)[C@@H]1C[C@H]2C[C@@H](CCc3nn[nH]n3)CC[C@H]2CN1
-144: COc1ccc2c(c1)OC[C@@H](N1CCC(O)(c3ccc(F)cc3)CC1)[C@H]2O
-144: Oc1ccc2c(c1)OC[C@@H](N1CCC(Cc3ccccc3)CC1)[C@H]2O
-144: Oc1ccc2c(c1)OC[C@H](N1CCC(O)(c3ccccc3)CC1)[C@@H]2O
-206: [19:31:26] Explicit valence for atom # 0 Br, 1, is greater than permitted
+206: [02:11:33] Explicit valence for atom # 0 Br, 1, is greater than permitted
 206: ===============================================================================
 206: All tests passed (38339 assertions in 50 test cases)
 206: 
-227/230 Test #206: molStandardizeCatchTest ................   Passed  172.58 sec
-144: CC(=O)c1ccc2c(c1)[C@@]13CCCC[C@H]1[C@@H](C2)N(CC1CC1)CC3
-145: ===============================================================================
-145: All tests passed (12735 assertions in 18 test cases)
-145: 
-228/230 Test #145: distGeomHelpersCatch ...................   Passed  1125.52 sec
-144: CC(=O)O[C@@H]1CC[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C1)OCO5
-144: COc1cc2c(cc1OC)[C@@H]1C[C@@H]3C[C@H](O)CC[C@@H]3CN1CC2
-144: N#C[C@@H]1C[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C[C@@H]1O)OCO5
-144: COC(=O)[C@@H]1C[C@](C)(C(=O)O)NC(=O)N1
-144: CC(=O)OC1=C(Sc2ccccc2)C[C@H]2Cc3cc4cccc(O)c4c(O)c3C(=O)[C@H]2C1
-144: Nc1ncnc2c1ncn2[C@@H]1C[C@H](CO)[C@@H](O)C1
-144: C[C@H](C(N)=O)N1CC[C@@]23CCCC[C@@H]2[C@@H]1Cc1ccc(OCc2cccc(F)c2)cc13
-144: CN1C(=O)CC[C@@]2(C)C1=CCc1cc(Cl)ccc12
-144: Cc1nc(COc2ccc3c(c2)[C@@H](O)[C@@H](Cc2cccnc2)CO3)ccc1[N+](=O)[O-]
-144: [19:32:48] Molecule does not have explicit Hs. Consider calling AddHs()
-144: [19:32:16] 	---------------------------------
-144: [19:32:16] 	 test github issue 696: Bad 1-4 bounds matrix elements in highly constrained system
-144: [19:32:16] 	---------------------------------
-144: [19:32:16] 	 More ChEMBL molecules failing bounds smoothing.
-144: [19:32:16] 	---------------------------------
-144: [19:32:16] 	 ugly conformations can be generated for highly constrained ring systems.
-144: [19:32:16] 	---------------------------------
-144: [19:32:16] 	 test embed parameters structure.
-144: [19:32:18] 	---------------------------------
-144: [19:32:18] 	 test github 1227: Hs being used in RMSD filtering.
-144: [19:32:18] 	---------------------------------
-144: [19:32:18] 	 Failure to embed larger aromatic rings.
-144: [19:32:28] 	---------------------------------
-144: [19:32:28] 	 Deterministic with large random seeds
-144: [19:32:40] 	---------------------------------
-144: [19:32:40] 	 Github #1990: seg fault after RemoveHs
-144: [19:32:41] 	---------------------------------
-144: [19:32:41] 	 Github #2246: Use coordMap when starting embedding from random coords
-144: [19:32:48] 	---------------------------------
-144: [19:32:48] 	 Providing a distance bounds matrix.
-144: [19:32:48] 	---------------------------------
-144: [19:32:48] 	 Disabling fragmentation.
-144: [19:32:48] 	---------------------------------
-144: [19:32:48] 	 Using symmetry in conformation pruning.
-144: [19:32:48] 	---------------------------------
-144: [19:32:48] 	 Force trans amides.
-144: [19:32:48] 	---------------------------------
-144: [19:32:48] 	 test missing Hs warning.
-144: [19:32:48] 	---------------------------------
-144: [19:32:48] 	 basic H bond support.
-144: [19:32:48] *******************************************************
-229/230 Test #144: testDistGeomHelpers ....................   Passed  1262.95 sec
+229/230 Test #206: molStandardizeCatchTest ................   Passed   80.25 sec
 169: ===============================================================================
 169: All tests passed (93 assertions in 5 test cases)
 169: 
-230/230 Test #169: testRascalCluster ......................   Passed  663.36 sec
+230/230 Test #169: testRascalCluster ......................   Passed  385.00 sec
 
-77% tests passed, 54 tests failed out of 230
+77% tests passed, 53 tests failed out of 230
 
-Total Test time (real) = 1858.45 sec
+Total Test time (real) = 902.77 sec
 
 The following tests FAILED:
 	  2 - pyCoordGen (SEGFAULT)
@@ -38603,7 +38388,6 @@
 	154 - pyShapeHelpers (SEGFAULT)
 	156 - pyMolCatalog (SEGFAULT)
 	160 - pyMolDraw2D (SEGFAULT)
-	161 - testFMCS (Subprocess aborted)
 	162 - pyFMCS (SEGFAULT)
 	165 - pyMolHash (SEGFAULT)
 	167 - pyMMPA (SEGFAULT)
@@ -38637,7 +38421,7 @@
 Errors while running CTest
 make[2]: *** [Makefile:94: test] Error 8
 make[2]: Leaving directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
-dh_auto_test: error: cd obj-arm-linux-gnueabihf && make -j5 test ARGS\+=--verbose ARGS\+=-j5 returned exit code 2
+dh_auto_test: error: cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4 returned exit code 2
 make[1]: [debian/rules:149: override_dh_auto_test] Error 25 (ignored)
 make[1]: Leaving directory '/build/reproducible-path/rdkit-202409.2'
    create-stamp debian/debhelper-build-stamp
@@ -38647,7 +38431,7 @@
    debian/rules override_dh_auto_install
 make[1]: Entering directory '/build/reproducible-path/rdkit-202409.2'
 dh_auto_install
-	cd obj-arm-linux-gnueabihf && make -j5 install DESTDIR=/build/reproducible-path/rdkit-202409.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+	cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/rdkit-202409.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
 make[2]: Entering directory '/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf'
 /usr/bin/cmake -S/build/reproducible-path/rdkit-202409.2 -B/build/reproducible-path/rdkit-202409.2/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
 make  -f CMakeFiles/Makefile2 preinstall
@@ -38659,1250 +38443,1250 @@
 -- Install configuration: "None"
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/pytest.ini
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/RDRandom.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/RDConfig.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataManip
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataManip/Metric
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataManip/Metric/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataManip/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/TopNContainer.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/HierarchyVis.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/LazySignature.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/BitEnsemble.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/TopNContainer.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/BitUtils.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/VectCollection.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/LazySignature.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataStructs/BitEnsembleDb.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DistanceGeometry
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DistanceGeometry/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/conftest.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataManip
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataManip/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataManip/Metric
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DataManip/Metric/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Avalon
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Avalon/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/TestRunner.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/DataUtils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/SplitData.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/Stats.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/MLData.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/Transforms.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/Quantize.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/FindQuantBounds.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/InfoTheory
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/InfoTheory/entropy.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/InfoTheory/BitRank.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/InfoTheory/BitClusterer.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/InfoTheory/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/MatOps.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/files.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/SLT
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/SLT/Risk.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/SLT/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors/CompoundDescriptors.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors/Descriptors.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors/Parser.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/MLUtils
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/MLUtils/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/MLUtils/VoteImg.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Scoring
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Scoring/Scoring.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Scoring/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/murtagh_test.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/ClusterUtils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/Resemblance.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/Butina.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/Murtagh.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/Clusters.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/ClusterVis.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/Standardize.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/__pycache__
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/__pycache__/__init__.cpython-312.pyc
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/RDLogger.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Avalon
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Avalon/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Geometry
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Geometry/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/retest.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/chemdraw_qax.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/spiral.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/cactvs.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/chemdraw.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/listutils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/chemutils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/fileutils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/SimDivFilters
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/SimDivFilters/SimilarityPickers.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/SimDivFilters/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Numerics
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Numerics/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ForceField
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ForceField/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Geometry
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Geometry/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/DbInfo.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/DbResultSet.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/DbUtils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/DbModule.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/DbConnection.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/StorageUtils.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/utils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/ReportLab
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/ReportLab/pidReportLab.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/ReportLab/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/pagesizes.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/colors.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/SVG
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/SVG/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/SVG/pidSVG.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-10.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-18.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-10.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-14.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-10.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-24.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-14.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-24.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pil.1
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-10.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-18.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-12.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/metrics.dat
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/removemedium.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-10.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-18.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-12.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-12.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-14.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-12.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-24.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-18.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-24.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-8.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-24.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-8.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-14.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-10.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pil
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-14.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pidPIL.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/WX
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/WX/pidWxDc.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/WX/pidWX.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/WX/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/WX/pidWX.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/Pyart
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/Pyart/Fontmapping.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/Pyart/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/Pyart/pidPyart.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/util
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/util/HTMLPiddler.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/util/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/patches
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/patches/Imaging-1.1.1.diff
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS/latin1MetricsCache.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS/fontinfo.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS/psmetrics.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS/pidPS.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/tests
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/tests/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/tests/pstests.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/tests/pidtest.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/tests/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/tests/testallps.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/tests/pidtest.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/patches
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/patches/Imaging-1.1.1.diff
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/stringformat.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/examples
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/examples/formatted-strings.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/utils.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF/pdfdoc.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF/pdfgeom.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF/pdfmetrics.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF/pidPDF.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF/pdfdoc.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF/pdfgen.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF/pidPDF.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF/pdfutils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PDF/pdfmetrics.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/colors.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/pid.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/stringformat.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/examples
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/examples/formatted-strings.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/README
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/README
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/pid.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/TK
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/TK/pidTK.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/TK/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/TK/pidTK.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/util
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/util/HTMLPiddler.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/util/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/Qt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/Qt/pidQt4.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/Qt/pidQt.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/Qt/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/SVG
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/SVG/pidSVG.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/SVG/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pidPIL.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-14.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-10.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-8.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/metrics.dat
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-12.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-18.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-14.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-24.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-12.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-14.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/removemedium.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-10.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-18.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-10.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-24.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-14.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-10.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-18.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-10.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-24.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-14.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-18.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-8.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-12.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pil.1
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-12.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-24.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/symbol-10.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-24.pbm
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/SimDivFilters
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/SimDivFilters/SimilarityPickers.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/SimDivFilters/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/Standardize.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/Butina.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/Clusters.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/Resemblance.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/ClusterVis.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/Murtagh.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/ClusterUtils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Cluster/murtagh_test.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors/Parser.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors/CompoundDescriptors.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Descriptors/Descriptors.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/MatOps.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Scoring
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Scoring/Scoring.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Scoring/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/files.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/MLUtils
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/MLUtils/VoteImg.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/MLUtils/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/InfoTheory
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/InfoTheory/entropy.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/InfoTheory/BitClusterer.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/InfoTheory/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/InfoTheory/BitRank.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/Transforms.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/SplitData.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/DataUtils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/Stats.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/MLData.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/Quantize.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/Data/FindQuantBounds.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/SLT
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/SLT/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/ML/SLT/Risk.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Numerics
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Numerics/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/StorageUtils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/DbResultSet.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/DbModule.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/DbInfo.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/DbConnection.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Dbase/DbUtils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/conftest.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/Qt/pidQt4.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/ReportLab
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/ReportLab/pidReportLab.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/ReportLab/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS/pidPS.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS/latin1MetricsCache.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS/psmetrics.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/PS/fontinfo.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/sping/pagesizes.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/Node.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/Output.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/Supply.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SDSupply.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/demo.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/Filter.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/Transform.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DistanceGeometry
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/DistanceGeometry/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MCS.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/TemplateAlign.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MACCSkeys.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Lipinski.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SpacialScore.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm3D
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm3D/EmbedLib.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm3D/Pharmacophore.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm3D/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/QED.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/PyMol.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/PropertyMol.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fraggle
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fraggle/FraggleSim.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fraggle/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs/Utils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs/Torsions.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs/Sheridan.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs/Pairs.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/EnumerateStereoisomers.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SATIS.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Descriptors3D.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb/FingerprintUtils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb/Loader_sa.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb/Loader_orig.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb/Loader.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Scaffolds
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Scaffolds/ScaffoldNetwork.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Scaffolds/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Scaffolds/MurckoScaffold.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/BRICS.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MCS.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw/FreeSans.ttf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw/MolDrawing.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw/SimilarityMaps.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw/IPythonConsole.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw/InteractiveRenderer.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw/SimilarityMaps.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw/FreeSans.ttf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Draw/MolDrawing.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ReducedGraphs.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/ClusterMols.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/MolSimilarity.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/FingerprintMols.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemicalFeatures.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fragments.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AllChem.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Randomize.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Scaffolds
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Scaffolds/MurckoScaffold.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Scaffolds/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Scaffolds/ScaffoldNetwork.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FastSDMolSupplier.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/RegistrationHash.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FilterCatalog.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/Utils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/Generate.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/LazyGenerator.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/Matcher.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/SigFactory.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolSurf.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Suppliers
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Suppliers/MolSupplier.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Suppliers/DbMolSupplier.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Suppliers/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SaltRemover.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/PandasTools.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolStandardize
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolStandardize/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Crippen.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Graphs.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/TorsionFingerprints.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/nbtests
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/nbtests/rdkit-structure-renderer.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/nbtests/github4823.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/nbtests/ChEMBL_quinolones.tsv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/DSViewer.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/BuildFragmentCatalog.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fraggle
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fraggle/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fraggle/FraggleSim.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Recap.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FeatMaps
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FeatMaps/FeatMapPoint.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FeatMaps/FeatMapUtils.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FeatMaps/FeatMaps.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FeatMaps/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FeatMaps/FeatMapParser.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FragmentCatalog.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AllChem.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolSurf.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb/Loader_sa.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb/Loader_orig.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb/Loader.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb/FingerprintUtils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolDb/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/RegistrationHash.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FeatMaps/FeatMapPoint.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FeatMaps/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SimpleEnum
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SimpleEnum/Enumerator.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SimpleEnum/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/EState
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/EState/EState_VSA.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/EState/AtomTypes.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/EState/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/EState/AtomTypes.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/EState/Fingerprinter.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/EState/EState.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SimpleEnum
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SimpleEnum/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SimpleEnum/Enumerator.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FragmentMatcher.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/EnumerateStereoisomers.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Suppliers
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Suppliers/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Suppliers/MolSupplier.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Suppliers/DbMolSupplier.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/inchi.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/ClusterMols.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/FingerprintMols.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/MolSimilarity.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/SubshapeObjects.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/SubshapeBuilder.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/SubshapeAligner.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/demoCombined.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/BuilderUtils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Features
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Features/FeatDirUtilsRD.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Features/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Features/ShowFeats.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Graphs.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/GraphDescriptors.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SpacialScore.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Lipinski.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/QED.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Descriptors3D.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Fragments.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FilterCatalog.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/BRICS.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Descriptors.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FeatFinderCLI.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MACCSkeys.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FastSDMolSupplier.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/PyMol.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemicalForceFields.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolCatalog.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/SaltRemover.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/fmcs
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/fmcs/fmcs.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/fmcs/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/fmcs/fmcs
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Crippen.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FragmentCatalog.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/EnumerateHeterocycles.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/DSViewer.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemicalFeatures.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/GraphDescriptors.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolKey
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolKey/InchiInfo.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolKey/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolKey/MolKey.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemUtils
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemUtils/BulkTester.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemUtils/AlignDepict.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemUtils/TemplateExpand.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemUtils/DescriptorUtilities.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemUtils/SDFToCSV.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemUtils/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemUtils/TemplateExpand.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/Utils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/LazyGenerator.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/SigFactory.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/Matcher.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm2D/Generate.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Descriptors.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/BuildFragmentCatalog.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolKey
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolKey/MolKey.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolKey/InchiInfo.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolKey/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemUtils/AlignDepict.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemUtils/BulkTester.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/FunctionalGroups.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/TorsionFingerprints.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/PandasPatcher.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/TemplateAlign.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/PandasTools.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolStandardize
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/MolStandardize/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Recap.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ReducedGraphs.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/fmcs
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/fmcs/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/fmcs/fmcs.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/fmcs/fmcs
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs/Utils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs/Torsions.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs/Sheridan.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/AtomPairs/Pairs.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/inchi.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/BuilderUtils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/SubshapeObjects.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/SubshapeAligner.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/SubshapeBuilder.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Subshape/demoCombined.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ShowMols.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/nbtests
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/nbtests/github4823.ipynb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/nbtests/ChEMBL_quinolones.tsv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/nbtests/rdkit-structure-renderer.ipynb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm3D
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm3D/EmbedLib.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm3D/Pharmacophore.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Pharm3D/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/chemdraw_qax.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/cactvs.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/chemdraw.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/fileutils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/retest.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/listutils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/spiral.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/utils/chemutils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/Filter.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/Node.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/Transform.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/Output.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/demo.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SDSupply.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/__init__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/VLib/Supply.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/ChemicalForceFields.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Features
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Features/ShowFeats.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Features/FeatDirUtilsRD.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/Features/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/Chem/PandasPatcher.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/RDRandom.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/python3.12/site-packages/rdkit/RDConfig.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/FunctionalGroups.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Crippen.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/wehi_pains.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/test_data
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/test_data/test_set3.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/test_data/wehi_mols.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/test_data/run_tests.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/README.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/struchk
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.opt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.trn
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.chk
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/BaseFeatures.fdef
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/rddata.sql
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/RDTests.sqlt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/FragmentDescriptors.csv
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Functional_Group_Hierarchy.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/FunctionalGroups.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/RDTests.sqlt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Salts.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/RDData.sqlt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/Amadeus.ttf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/font_dumper.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/Telex-Regular.ttf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/amadeus_font_license.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/telex_font_license.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/roboto_regular_license.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/FragmentDescriptors.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Crippen.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/NCI
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/NCI/first_5K.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/NCI/first_200.props.sdf
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/NCI/first_5k.tpsa.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/NCI/first_5K.smi
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/NCI/first_200.tpsa.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/struchk
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.trn
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.opt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.chk
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/BaseFeatures.fdef
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/NCI/first_200.props.sdf
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/SmartsLib
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/SmartsLib/patty_rules.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/bench2.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/mols.1000.pkl.gz
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/fps.1000.counts.pkl.gz
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/bench2.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/SmartsLib/patty_rules.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/SmartsLib/RLewis_smarts.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/font_dumper.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/telex_font_license.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/roboto_regular_license.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/Telex-Regular.ttf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/Amadeus.ttf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Fonts/amadeus_font_license.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/README.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/test_data
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/test_data/wehi_mols.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/test_data/run_tests.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/test_data/test_set3.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/Pains/wehi_pains.csv
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/DTDs
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/DTDs/RD_Dataset.dtd
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/DTDs/validate.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/DTDs/RD_Model.dtd
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Data/DTDs/validate.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/MolStandardize.ipynb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/compounds.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-Tests.ipynb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/compounds.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/MolStandardize.ipynb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GenericCores.ipynb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GA.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-DummyCores.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GA.ipynb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-StereoChemTest.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/gsocGeneralFileReader.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/EnhancedStereo.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/SGroups.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/CIPLabeling.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/CodingStandards.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_trans_base.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_base.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_expand.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_expand.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_expand.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/The_RDKit_Book_jp.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/introduction_jp.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/conf.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/Supplementary_Text_jp.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/terminology_jp.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/Backwards_incompatible_changes_jp.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/Installation_jp.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/Makefile
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/The_RDKit_database_cartridge_jp.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/index.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/RDKit_cookbook_jp.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/Getting_Started_with_RDKit_in_Python_jp.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/An_overview_of_the_RDKit_jp.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_30.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_11.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_42.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_54.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_10.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_35.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_23.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_16.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_41.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_61.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_59.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_29.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_21.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_22.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_27.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_36.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_55.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_12.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_44.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_32.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_50.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_60.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_51.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_34.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_24.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_39.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_45.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_49.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_25.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_5.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_53.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_57.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_8.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_33.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_19.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_38.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_47.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_62.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_9.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_6.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_56.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_17.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_13.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_52.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_15.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_48.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_4.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_28.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_43.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_31.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_14.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_18.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_40.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_58.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_7.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_46.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_20.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_37.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_26.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo.inkscape.svg
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/wiki
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo.lrg.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo.ai
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/EnhancedStereo.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/CodingStandards.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/SGroups.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/CIPLabeling.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/Cookbook.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/GettingStartedInPython.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/MinimalFeatures.fdef
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf.gz
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/README.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/5ht3ligs.sdf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/AmideBond.rxn
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.train.sdf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/chiral.mol
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/s1p_chembldoc89753.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/test_multi_colours.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.sdf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/invalid.mol
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/cdk2.sdf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.test.sdf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/input.mol
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/conf.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/Cartridge.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example5.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example4.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example2.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example9.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/CMakeLists.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example11.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example7.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example6.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example1.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example3.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/FindMyRDKit.cmake
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example14.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example15.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example13.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example10.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example16.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example8.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example17.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example12.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/Install.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/RDKit_Book.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/BackwardsIncompatibleChanges.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/Makefile
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/api-docs.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Pairs.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.QED.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesDupeFilter.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentMatcher.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.AlignDepict.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.CompoundDescriptors.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeAligner.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ReducedGraphs.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.VoteImg.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rdScaffoldNetwork.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSLNParse.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.FeatDirUtilsRD.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.MolSimilarity.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Sheridan.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.TorsionFingerprints.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Resemblance.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.InchiInfo.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.IPythonConsole.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_orig.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2D.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rdAlignment.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFingerprintGenerator.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolAlign.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.FingerprintUtils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.VectCollection.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapPoint.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors3D.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Output.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Node.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Transforms.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.MolSimilarity.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Standardize.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDepictor.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ShowMols.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolops.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeBuilder.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.cQuantize.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolCatalog.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Lipinski.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapUtils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolHash.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Supply.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.fileutils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Utils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalFeatures.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rdMolStandardize.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Quantize.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMaps.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsembleDb.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clusters.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fragments.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterUtils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfiltercatalog.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemReactions.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDistGeom.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsMolFilter.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SaltRemover.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2DQt.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeAlign.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.AtomTypes.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdTautomerQuery.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.files.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDetermineBonds.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCIPLabeler.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.VoteImg.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_sa.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFingerprintGenerator.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbModule.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSLNParse.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.BulkTester.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.DescriptorUtilities.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.ShowFeats.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMHFPFingerprint.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.FraggleSim.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.AlignDepict.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolSurf.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalForceFields.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.BuildFragmentCatalog.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMMPA.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Supply.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.SigFactory.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.entropy.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Filter.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolCatalog.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbInfo.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Avalon.pyAvalonTools.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Parser.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PeriodicTable.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.LazySignature.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDeprotect.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.DbFpSupplier.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.RegistrationHash.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalFeatures.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFreeSASA.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.MurckoScaffold.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdReducedGraphs.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.TopNContainer.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.BuilderUtils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Generate.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.LazySignature.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentMatcher.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_orig.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rdForceField.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rdSimDivPickers.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeHelpers.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.TemplateExpand.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.FindQuantBounds.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.DistGeom.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCoordGen.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapParser.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.Pharmacophore.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SATIS.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.cQuantize.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitRank.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.DbMolSupplier.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsRemover.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapUtils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.fmcs.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.TorsionFingerprints.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Recap.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState_VSA.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdtrajectory.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ReducedGraphs.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.inchi.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MatOps.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.DbFpSupplier.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfragcatalog.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Descriptors.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFMCS.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolfiles.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.GraphDescriptors.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Transforms.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.BRICS.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Quantize.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolTransforms.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Stats.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDPaths.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.MLData.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolops.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.QED.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Utils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapPoint.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdEHTTools.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdqueries.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.Enumerator.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Standardize.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.DataUtils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDLogger.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MatOps.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeAlign.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateStereoisomers.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.DbMolSupplier.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.TemplateAlign.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.SDFToCSV.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.DistGeom.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Avalon.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AllChem.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsemble.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Crippen.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsMolFilter.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdAbbreviations.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.FingerprintMols.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Matcher.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Parser.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.fileutils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rdAlignment.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDLogger.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SDSupply.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfiltercatalog.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rdMetricMatrixCalc.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCoordGen.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.TestRunner.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Node.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFMCS.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Pairs.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdinchi.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.InchiInfo.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.MolDrawing.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.SimilarityPickers.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDConfig.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SpacialScore.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.MoleculeDescriptors.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.FeatDirUtilsRD.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.IPythonConsole.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.ClusterMols.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.TemplateAlign.rst
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--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Randomize.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clusters.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolCatalog.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsembleDb.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FilterCatalog.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.RegistrationHash.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateHeterocycles.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolHash.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdAbbreviations.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.VectCollection.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterVis.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.SplitData.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateStereoisomers.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitClusterer.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Graphs.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeBuilder.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fragments.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.ExcludedVolume.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Lipinski.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitUtils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolAlign.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemReactions.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeObjects.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFreeSASA.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Torsions.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.rdBase.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeAligner.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst
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--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clustering.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Randomize.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.SimilarityScreener.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MACCSkeys.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.MolSupplier.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors3D.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.TemplateExpand.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Crippen.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbUtils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.MolKey.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.spiral.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMaps.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.CompoundDescriptors.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rdScaffoldNetwork.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PyMol.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.FindQuantBounds.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.chemutils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Output.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesDupeFilter.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbResultSet.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdEHTTools.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Butina.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbPickleSupplier.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterUtils.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rdGeometry.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Stats.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.listutils.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2D.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDRandom.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PandasTools.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PeriodicTable.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsemble.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AllChem.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Sheridan.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.cDataStructs.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolEnumerator.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.SimilarityPickers.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterVis.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MACCSkeys.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rdMetricMatrixCalc.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalForceFields.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rdInfoTheory.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbConnection.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitUtils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateHeterocycles.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDistGeom.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.ShowFeats.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SDSupply.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.rdBase.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.SigFactory.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.entropy.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Filter.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FastSDMolSupplier.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.DataUtils.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.SDFToCSV.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.DescriptorUtilities.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Recap.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PropertyMol.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapParser.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rdForceField.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Utils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PandasTools.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatFinderCLI.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2DQt.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdReducedGraphs.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Utils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdqueries.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCIPLabeler.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.BuilderUtils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.AtomTypes.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolCatalog.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolTransforms.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.files.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.spiral.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdtrajectory.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.Fingerprinter.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolEnumerator.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.SimilarityMaps.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clustering.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FunctionalGroups.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.FraggleSim.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.StorageUtils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Transform.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDRandom.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.MolSupplier.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.MoleculeDescriptors.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeObjects.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsRemover.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDPaths.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Avalon.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMMPA.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.BRICS.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.inchi.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.TopNContainer.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.MolDrawing.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_sa.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rdSimDivPickers.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Matcher.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbPickleSupplier.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolfiles.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.MurckoScaffold.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatFinderCLI.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PropertyMol.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.cDataStructs.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentCatalog.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDepictor.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.fmcs.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.BulkTester.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfragcatalog.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.Pharmacophore.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdinchi.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SaltRemover.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.MLData.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.MolKey.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PyMol.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolSurf.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.SimilarityMaps.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.Fingerprinter.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMHFPFingerprint.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitRank.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.ExcludedVolume.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbInfo.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Graphs.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.ClusterMols.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbUtils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState_VSA.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FilterCatalog.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SpacialScore.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitClusterer.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDetermineBonds.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.SimilarityScreener.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SATIS.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbModule.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Generate.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.TestRunner.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.BuildFragmentCatalog.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDConfig.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FastSDMolSupplier.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.EmbedLib.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.listutils.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Murtagh.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.chemutils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Butina.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbResultSet.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/index.rst
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/exts
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/exts/extapi.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rdInfoTheory.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbConnection.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.EmbedLib.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Transform.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/GettingStartedInPython.rst
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/GettingStartedInC++.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/Overview.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/Makefile
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf.gz
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/chiral.mol
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.test.sdf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/test_multi_colours.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/cdk2.sdf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.train.sdf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/input.mol
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.smi
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.sdf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/MinimalFeatures.fdef
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/5ht3ligs.sdf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/README.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/s1p_chembldoc89753.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/invalid.mol
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/AmideBond.rxn
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/BackwardsIncompatibleChanges.md
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_8.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im4.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molD.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_6_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_0_im2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_highlights_3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_8_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_29_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/query_atoms.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_highlights_2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_20_im1.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_13_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_representation1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_34_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_34_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_19_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_tb1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_33_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_23_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example5.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/reaction1_highlight.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_annotation_1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_4.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_labels_3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molC.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_23_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molF.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_6.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_oh2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_labels_2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_38_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_37_im2.svg
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/query_bonds.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_charges.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_37_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_missing1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_highlights_1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im2.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_2_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im5.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_representation2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/Cc1ccccc1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_ex2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im4.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/rdk_bit1553.svg
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/substruct_search_parameters1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_34_im2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_35_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molE.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molG.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_9.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_5.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_5.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_3_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mol_metadata1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_ex1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/indole1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_crippen.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_28_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_30_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_labels_1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molA.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_11.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/ary_group.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_oh1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_22_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_6.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/reaction1.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im5.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_3_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_tb1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_3.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_0_im1.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_13_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_39_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_tb2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_19_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_0_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/rdk_bit1553_2.svg
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_8.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_17_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_labels_3.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/rdk_bit1553_2.svg
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_12.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mfp2_bit872.svg
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_20_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_4.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_36_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_7.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molF.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_ex1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_labels_2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im3.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_33_im2.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im5.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/indole1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_rf.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_37_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/reaction1_highlight.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/parastereo_2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mol_metadata1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_9.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_40_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_17_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_36_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im4.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_40_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_37_im2.svg
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_29_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_28_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/parastereo_1.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_32_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_22_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.jpg
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_7.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_4.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_6_im2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_highlights_1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_23_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/ary_group.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/parastereo_1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_20_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_0_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_40_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_22_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im6.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example3.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_37_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_13_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/rdk_bit1553.svg
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_30_im1.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/query_bonds.2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_missing1.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_0_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molB.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_3.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im6.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_6_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_6.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_4.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/stereo_annotation.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mfp2_bit872.svg
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_rf.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_33_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im4.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_labels_1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_charges.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_36_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_34_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_12.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_39_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_22_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example5.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp4.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_30_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_20_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_highlights_2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_0_im2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/substruct_search_parameters1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_oh2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_highlights_3.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_crippen.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_33_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_5.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im3.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_8_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_annotation_1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_ex2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp3.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_6_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.jpg
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_2_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/parastereo_2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_33_im2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_37_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_33_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_28_im1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_1.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/reaction1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_23_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_11.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molC.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im1.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example4.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond2.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_36_im0.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp3.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp3.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_34_im2.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_32_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molG.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_30_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molA.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molD.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_oh1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_35_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_17_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molB.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_5.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_28_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_tb2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/query_atoms.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_representation2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_34_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molE.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/Cc1ccccc1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_6_im2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_6_im0.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/query_bonds.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_representation1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/RDKit_Book.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/FindMyRDKit.cmake
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example5.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example3.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example7.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example4.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/CMakeLists.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example8.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example1.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example15.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example14.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example6.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example9.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example13.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example16.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example10.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example2.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example17.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example12.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example11.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/exts
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/exts/extapi.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/Cookbook.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/Overview.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/api-docs.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/Install.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/Cartridge.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book/index.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/The_RDKit_Book_jp.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/conf.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/Getting_Started_with_RDKit_in_Python_jp.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/Makefile
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/Installation_jp.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/Backwards_incompatible_changes_jp.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/terminology_jp.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/An_overview_of_the_RDKit_jp.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_37.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_32.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_36.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_23.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_45.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_57.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_56.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_5.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_12.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_25.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_17.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_59.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_49.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_60.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_44.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_20.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_15.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_41.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_42.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_27.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_47.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_34.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_21.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_24.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_4.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_39.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_14.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_6.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_13.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_52.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_46.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_29.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_10.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_58.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_19.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_35.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_9.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_2.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_30.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_3.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_51.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_43.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_8.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_26.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_48.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_38.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_22.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_50.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_16.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_31.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_28.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_55.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_33.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_53.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_54.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_40.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_7.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_18.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_11.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_61.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_62.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/introduction_jp.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/RDKit_cookbook_jp.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/The_RDKit_database_cartridge_jp.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/index.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Book_jp/Supplementary_Text_jp.rst
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/RD.css
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo.inkscape.svg
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo.ai
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/wiki
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo.lrg.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/AddLabels.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/README.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePredict.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/CreateFps.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePlot.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/ClusterFps.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/M_Kossner
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/Frames.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/README
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/IFG
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/IFG/README
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/IFG/ifg.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/sdf2smi.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/cdk2.sdf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/converted.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/clustered_parse.tsv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/README.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/centroid.tsv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/fastcluster.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/clustered.tsv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/cdk2.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/fp.tsv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/freewilson.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/requirements.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/pytest.ini
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810_act.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810_scaffold.mol
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/README.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/setup.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/test
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/test/test_freewilson.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/PBFRDKit.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/demo.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/PBFRDKit.h
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/Makefile
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/README
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/pbf.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/testData
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.sdf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.out
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/Examples_CalcLigRMSD.ipynb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/6c83_complex.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/5dpv_complex.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/AKI.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/N15.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/1C9.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/BEG.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/JVE.png
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/5dt0.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/ACP_crystal_aligned_1.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/5dpv.pdb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/crystal_aligned.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_JVE_pH74_netcharge1.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_ACP_pH74_netcharge1.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/BEG_test.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_SKE_pH74_netcharge1.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_3w2p_1C9_pH74_netcharge1.pdb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_AKI_pH74_netcharge1.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/ACP_renamed.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/4i23_1C9.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/ACP_crystal_aligned_2.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/1C9_renamed.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/3w2c_N15.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/3m11_AKI.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_SKE_pH74_netcharge1.pdb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/1d4i_BEG.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/lig_crystal_aligned.pdb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/N15_renamed.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/aurka_protein_2c6e.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/AKI_renamed.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/4uzh_JVE.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/SKE_crystal_aligned_1.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/JVE_renamed.pdb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/SKE_renamed.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/lig_crystal_aligned.pdb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_N15_pH74_netcharge1.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_ACP_pH74_netcharge1.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/4i23_1C9.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/5dpv.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/SKE_crystal_aligned_1.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_JVE_pH74_netcharge1.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/BEG_test.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/aurka_protein_2c6e.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/ACP_crystal_aligned_1.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/3w2c_N15.pdb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/6c83.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_3w2p_1C9_pH74_netcharge1.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/AKI_renamed.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/ACP_crystal_aligned_2.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/4uzh_JVE.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/3m11_AKI.pdb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/4i24_1C9.pdb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/README.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/Examples_CalcLigRMSD.ipynb
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/JVE.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/BEG.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/6c83_complex.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/5dpv_complex.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/AKI.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/1C9.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/N15.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/ACP_renamed.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/1C9_renamed.pdb
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/JVE_renamed.pdb
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/CalcLigRMSD.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/README.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CMakeLists.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePredict.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/CreateFps.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/ClusterFps.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePlot.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/AddLabels.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/LEF/README.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/fastcluster.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/cdk2.sdf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/converted.smi
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/sdf2smi.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/clustered_parse.tsv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/fp.tsv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/clustered.tsv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/cdk2.smi
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/centroid.tsv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/README.md
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/pzc
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.html
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/pzc/readme.md
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/CMakeLists.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/utils.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/README.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/identifyReactants.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/rdkit_tversky.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/fraggle.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/cxn_tversky.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query.smi
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/ChEMBL_11265_actives.smi
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/final_fraggle_results.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/atomcontrib.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/readme.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data/zim.100.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/UnitTestSAScore.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/README
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/sascorer.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/CMakeLists.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/CMakeLists.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/rdConformerParser.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/testConformerParser.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.h
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.cpp
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/cansmirk.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/mol_transform.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/indexing.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/rfrag.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_smart_output.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mol_trans_output.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_output.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_cansmirks.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_output.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/simple.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxheavy.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_default.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs_smarts.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_transfroms.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mol_trans_output.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_smi.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans_smarts.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxratio.csv
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_transfroms.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_smart_output.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym_maxheavy.csv
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smiles_mol_trans.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/README.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/mol_transform.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/rfrag.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans_smarts.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/simple.smi
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample.smi
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_output.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_output.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_default.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxratio.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs_smarts.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/test_rfrag.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/search_mmp_db.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/cansmirk.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/README.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/create_mmp_db.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/mmpa/indexing.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data/zim.100.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/sascorer.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/README
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/SA_Score/UnitTestSAScore.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/MolVS
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/MolVS/molvs_cli.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Glare
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Glare/README.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Glare/glare.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/Glare/README.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NP_Score
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NP_Score/publicnp.model.gz
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NP_Score/npscorer.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NP_Score/README
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ChiralPairs
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ChiralPairs/README.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ChiralPairs/ChiralDescriptors.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/CMakeLists.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.h
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test.cpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/testConformerParser.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/CMakeLists.txt
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/rdConformerParser.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/ChiralPairs/README.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/pytest.ini
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810_scaffold.mol
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810_act.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810.smi
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/freewilson.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/requirements.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/README.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/setup.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/test
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/test/test_freewilson.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/utils.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/__init__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/identifyReactants.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/README.txt
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/pbf.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/PBFRDKit.h
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/Makefile
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/testData
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.out
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.sdf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/demo.cpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/README
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/PBF/PBFRDKit.cpp
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/filterExamples.png
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/README.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/FilterSet_NIBR2019_wPubChemExamples.html
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/examples
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/examples/chembl24_structs_randomtestSample_100_out.csv
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/examples/chembl24_structs_randomtestSample_100.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/FilterSet_NIBR2019_wPubChemExamples.html
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/examples/chembl24_structs_randomtestSample_100_out.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/SubstructureFilter_HitTriaging_wPubChemExamples.csv
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/filterExamples.png
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/README.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/IFG
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/IFG/README
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/IFG/ifg.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/M_Kossner
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/README
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/Frames.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/AtomAtomSimilarity
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/MolVS
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/MolVS/molvs_cli.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NP_Score
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NP_Score/README
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NP_Score/publicnp.model.gz
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/NP_Score/npscorer.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/rdkit_tversky.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/atomcontrib.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/ChEMBL_11265_actives.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/final_fraggle_results.csv
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/fraggle.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/cxn_tversky.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Contrib/fraggle/readme.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/pytest.ini
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/SearchDb.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/UnitTestDbCLI.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/__pycache__
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/__pycache__/CreateDb.cpython-312.pyc
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/moe_like.dsc
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.sdf
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/README
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/pubchem.200.sdf
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.2.smi
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/README
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.smi
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.sdf
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/UnitTestDbCLI.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/CreateDb.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Projects/DbCLI/moe_like.dsc
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/PythonFormat.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/gen_rdkit_stubs
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/gen_rdkit_stubs/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/gen_rdkit_stubs/worker.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/gen_rdkit_stubs/__main__.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/README.md
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/gen_rdkit_stubs/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/test.sh
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/FeatFinderCLI.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/PythonFormat.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/create_deb_packages.sh
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/FeatFinderCLI.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/README.md
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/patch_rdkit_docstrings
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/patch_rdkit_docstrings/clang_worker.py
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/patch_rdkit_docstrings/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/patch_rdkit_docstrings/__main__.py
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/Scripts/patch_rdkit_docstrings/__init__.py
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/README.md
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/share/RDKit/license.txt
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/libRDKitRDInchiLib.so.1.2024.09.2
@@ -39945,12 +39729,12 @@
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/test.h
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/ConcurrentQueue.h
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash_fwd.hpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash/extensions.hpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash.hpp
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash/detail
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash/detail/float_functions.hpp
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash/detail/hash_float.hpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash.hpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash/extensions.hpp
--- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash_fwd.hpp
+-- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/include/rdkit/RDGeneral/hash/detail/float_functions.hpp
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/libRDKitRDBoost.so.1.2024.09.2
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/libRDKitRDBoost.so.1
 -- Installing: /build/reproducible-path/rdkit-202409.2/debian/tmp/usr/lib/libRDKitRDBoost.so
@@ -40538,16 +40322,16 @@
 make[1]: Entering directory '/build/reproducible-path/rdkit-202409.2'
 dh_python3 -ppython3-rdkit
 I: dh_python3 fs:421: renaming rdBase.so to rdBase.cpython-312-arm-linux-gnueabihf.so
-I: dh_python3 fs:421: renaming rdMetricMatrixCalc.so to rdMetricMatrixCalc.cpython-312-arm-linux-gnueabihf.so
 I: dh_python3 fs:421: renaming cDataStructs.so to cDataStructs.cpython-312-arm-linux-gnueabihf.so
-I: dh_python3 fs:421: renaming DistGeom.so to DistGeom.cpython-312-arm-linux-gnueabihf.so
-I: dh_python3 fs:421: renaming rdGeometry.so to rdGeometry.cpython-312-arm-linux-gnueabihf.so
-I: dh_python3 fs:421: renaming rdForceField.so to rdForceField.cpython-312-arm-linux-gnueabihf.so
-I: dh_python3 fs:421: renaming rdSimDivPickers.so to rdSimDivPickers.cpython-312-arm-linux-gnueabihf.so
-I: dh_python3 fs:421: renaming Clustering.so to Clustering.cpython-312-arm-linux-gnueabihf.so
-I: dh_python3 fs:421: renaming rdInfoTheory.so to rdInfoTheory.cpython-312-arm-linux-gnueabihf.so
+I: dh_python3 fs:421: renaming rdMetricMatrixCalc.so to rdMetricMatrixCalc.cpython-312-arm-linux-gnueabihf.so
 I: dh_python3 fs:421: renaming cQuantize.so to cQuantize.cpython-312-arm-linux-gnueabihf.so
+I: dh_python3 fs:421: renaming rdInfoTheory.so to rdInfoTheory.cpython-312-arm-linux-gnueabihf.so
+I: dh_python3 fs:421: renaming Clustering.so to Clustering.cpython-312-arm-linux-gnueabihf.so
+I: dh_python3 fs:421: renaming rdSimDivPickers.so to rdSimDivPickers.cpython-312-arm-linux-gnueabihf.so
 I: dh_python3 fs:421: renaming rdAlignment.so to rdAlignment.cpython-312-arm-linux-gnueabihf.so
+I: dh_python3 fs:421: renaming rdForceField.so to rdForceField.cpython-312-arm-linux-gnueabihf.so
+I: dh_python3 fs:421: renaming rdGeometry.so to rdGeometry.cpython-312-arm-linux-gnueabihf.so
+I: dh_python3 fs:421: renaming DistGeom.so to DistGeom.cpython-312-arm-linux-gnueabihf.so
 I: dh_python3 fs:421: renaming rdAbbreviations.so to rdAbbreviations.cpython-312-arm-linux-gnueabihf.so
 I: dh_python3 fs:421: renaming rdCIPLabeler.so to rdCIPLabeler.cpython-312-arm-linux-gnueabihf.so
 I: dh_python3 fs:421: renaming rdChemReactions.so to rdChemReactions.cpython-312-arm-linux-gnueabihf.so
@@ -40587,8 +40371,8 @@
 I: dh_python3 fs:421: renaming rdmolops.so to rdmolops.cpython-312-arm-linux-gnueabihf.so
 I: dh_python3 fs:421: renaming rdqueries.so to rdqueries.cpython-312-arm-linux-gnueabihf.so
 I: dh_python3 fs:421: renaming rdtrajectory.so to rdtrajectory.cpython-312-arm-linux-gnueabihf.so
-I: dh_python3 fs:421: renaming rdMolDraw2D.so to rdMolDraw2D.cpython-312-arm-linux-gnueabihf.so
 I: dh_python3 fs:421: renaming rdScaffoldNetwork.so to rdScaffoldNetwork.cpython-312-arm-linux-gnueabihf.so
+I: dh_python3 fs:421: renaming rdMolDraw2D.so to rdMolDraw2D.cpython-312-arm-linux-gnueabihf.so
 I: dh_python3 fs:421: renaming rdMolStandardize.so to rdMolStandardize.cpython-312-arm-linux-gnueabihf.so
 dh_numpy3 -ppython3-rdkit
 make[1]: Leaving directory '/build/reproducible-path/rdkit-202409.2'
@@ -41219,94 +41003,94 @@
  diversion by libc6 from: /lib/ld-linux-armhf.so.3
 dpkg-shlibdeps: warning: diversions involved - output may be incorrect
  diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitTautomerQuery.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDeprotect.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDepictor.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: debian/postgresql-17-rdkit/usr/lib/postgresql/17/lib/rdkit.so contains an unresolvable reference to symbol MemoryContextAllocZero: it's probably a plugin
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolHash.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitSmilesParse.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitForceField.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitSubstructLibrary.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: debian/postgresql-17-rdkit/usr/lib/postgresql/17/lib/rdkit.so contains an unresolvable reference to symbol CurrentMemoryContext: it's probably a plugin
 dpkg-shlibdeps: warning: 26 other similar warnings have been skipped (use -v to see them all)
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitFingerprints.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDistGeomHelpers.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitChemTransforms.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolCatalog.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitFragCatalog.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitSubstructMatch.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitSubstructLibrary.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitGraphMol.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMMPA.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitTautomerQuery.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolAlign.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitFMCS.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitFilterCatalog.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitAbbreviations.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDataStructs.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolDraw2D.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolChemicalFeatures.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMarvinParser.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitSubgraphs.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolStandardize.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolInterchange.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitTrajectory.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitFragCatalog.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitForceFieldHelpers.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitFMCS.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMMPA.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitO3AAlign.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitAbbreviations.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitScaffoldNetwork.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRDGeneral.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRascalMCES.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitReducedGraphs.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolProcessing.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitCIPLabeler.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolAlign.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitChemReactions.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitSmilesParse.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolEnumerator.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitFilterCatalog.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitShapeHelpers.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol PyExc_KeyError used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol PyObject_CallFunction used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRascalMCES.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDescriptors.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol PyExc_KeyError used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all)
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRDGeometryLib.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitGraphMol.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRDInchiLib.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolHash.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDeprotect.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDistGeometry.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolCatalog.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitGenericGroups.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitChemTransforms.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitGeneralizedSubstruct.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolTransforms.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitFingerprints.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRDGeometryLib.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitga.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRGroupDecomposition.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitPartialCharges.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitForceField.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDistGeomHelpers.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDataStructs.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRDGeneral.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitScaffoldNetwork.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDepictor.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitGenericGroups.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitForceFieldHelpers.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitSLNParse.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolEnumerator.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRDInchiLib.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolStandardize.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitSubgraphs.so.1.2024.09.2 found in none of the libraries
 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitFileParsers.so.1.2024.09.2 found in none of the libraries
-dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitDescriptors.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitTrajectory.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolInterchange.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitRGroupDecomposition.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolProcessing.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitCIPLabeler.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMolTransforms.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitPartialCharges.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitMarvinParser.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitReducedGraphs.so.1.2024.09.2 found in none of the libraries
+dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1t64/usr/lib/libRDKitShapeHelpers.so.1.2024.09.2 found in none of the libraries
    dh_installdeb -O--buildsystem=cmake
    dh_gencontrol -O--buildsystem=cmake
-dpkg-gencontrol: warning: Depends field of package rdkit-data: substitution variable ${shlibs:Depends} used, but is not defined
 dpkg-gencontrol: warning: Depends field of package librdkit-dev: substitution variable ${shlibs:Depends} used, but is not defined
+dpkg-gencontrol: warning: Depends field of package rdkit-data: substitution variable ${shlibs:Depends} used, but is not defined
+dpkg-gencontrol: warning: Provides field of package python3-rdkit: substitution variable ${python3:Provides} used, but is not defined
 dpkg-gencontrol: warning: package librdkit-dev: substitution variable ${python3:Depends} unused, but is defined
 dpkg-gencontrol: warning: package rdkit-data: substitution variable ${python3:Depends} unused, but is defined
-dpkg-gencontrol: warning: Provides field of package python3-rdkit: substitution variable ${python3:Provides} used, but is not defined
 dpkg-gencontrol: warning: package postgresql-17-rdkit: substitution variable ${python3:Depends} unused, but is defined
-dpkg-gencontrol: warning: package librdkit1t64: substitution variable ${python3:Depends} unused, but is defined
 dpkg-gencontrol: warning: Provides field of package python3-rdkit: substitution variable ${python3:Provides} used, but is not defined
+dpkg-gencontrol: warning: package librdkit1t64: substitution variable ${python3:Depends} unused, but is defined
 dpkg-gencontrol: warning: package postgresql-17-rdkit: substitution variable ${python3:Depends} unused, but is defined
 dpkg-gencontrol: warning: package librdkit1t64: substitution variable ${python3:Depends} unused, but is defined
 dpkg-gencontrol: warning: Depends field of package rdkit-doc: substitution variable ${shlibs:Depends} used, but is not defined
 dpkg-gencontrol: warning: package rdkit-doc: substitution variable ${python3:Depends} unused, but is defined
    dh_md5sums -O--buildsystem=cmake
    dh_builddeb -O--buildsystem=cmake
+dpkg-deb: building package 'rdkit-data' in '../rdkit-data_202409.2-2_all.deb'.
 dpkg-deb: building package 'python3-rdkit' in '../python3-rdkit_202409.2-2_armhf.deb'.
-dpkg-deb: building package 'postgresql-17-rdkit-dbgsym' in '../postgresql-17-rdkit-dbgsym_202409.2-2_armhf.deb'.
-dpkg-deb: building package 'rdkit-doc' in '../rdkit-doc_202409.2-2_all.deb'.
-dpkg-deb: building package 'librdkit1t64' in '../librdkit1t64_202409.2-2_armhf.deb'.
 dpkg-deb: building package 'librdkit-dev' in '../librdkit-dev_202409.2-2_armhf.deb'.
 dpkg-deb: building package 'postgresql-17-rdkit' in '../postgresql-17-rdkit_202409.2-2_armhf.deb'.
-dpkg-deb: building package 'librdkit1t64-dbgsym' in '../librdkit1t64-dbgsym_202409.2-2_armhf.deb'.
+dpkg-deb: building package 'postgresql-17-rdkit-dbgsym' in '../postgresql-17-rdkit-dbgsym_202409.2-2_armhf.deb'.
 dpkg-deb: building package 'python3-rdkit-dbgsym' in '../python3-rdkit-dbgsym_202409.2-2_armhf.deb'.
-dpkg-deb: building package 'rdkit-data' in '../rdkit-data_202409.2-2_all.deb'.
+dpkg-deb: building package 'librdkit1t64' in '../librdkit1t64_202409.2-2_armhf.deb'.
+dpkg-deb: building package 'librdkit1t64-dbgsym' in '../librdkit1t64-dbgsym_202409.2-2_armhf.deb'.
+dpkg-deb: building package 'rdkit-doc' in '../rdkit-doc_202409.2-2_all.deb'.
  dpkg-genbuildinfo --build=binary -O../rdkit_202409.2-2_armhf.buildinfo
  dpkg-genchanges --build=binary -O../rdkit_202409.2-2_armhf.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
@@ -41314,12 +41098,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: not including original source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/3587/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/3587/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/7487 and its subdirectories
-I: Current time: Thu Nov 28 19:54:56 -12 2024
-I: pbuilder-time-stamp: 1732866896
+I: removing directory /srv/workspace/pbuilder/3587 and its subdirectories
+I: Current time: Sat Nov 30 02:24:57 +14 2024
+I: pbuilder-time-stamp: 1732883097