Diff of the two buildlogs: -- --- b1/build.log 2024-03-29 15:03:06.101974083 +0000 +++ b2/build.log 2024-03-29 15:09:02.646773164 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Mar 29 02:49:16 -12 2024 -I: pbuilder-time-stamp: 1711723756 +I: Current time: Sat Mar 30 05:03:23 +14 2024 +I: pbuilder-time-stamp: 1711724603 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: unpacking presto_0.7.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/24238/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/23154/tmp/hooks/D01_modify_environment starting +debug: Running on virt64z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 29 15:03 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/23154/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/23154/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='61100c515f6849d7b1a1fcb83b035b6c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='24238' - PS1='# ' - PS2='> ' + INVOCATION_ID=d0b765db87e441fabe6426ed63d9fa66 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=23154 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GZlJxPGu/pbuilderrc_8TeR --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GZlJxPGu/b1 --logfile b1/build.log presto_0.7.2-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GZlJxPGu/pbuilderrc_PFtG --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GZlJxPGu/b2 --logfile b2/build.log presto_0.7.2-1.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux cbxi4a 6.1.0-18-armmp #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 25 16:04 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/24238/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 25 16:02 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/23154/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -240,7 +272,7 @@ Get: 116 http://deb.debian.org/debian unstable/main armhf python3-pandas-lib armhf 2.1.4+dfsg-5 [7000 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf python3-pandas all 2.1.4+dfsg-5 [3015 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf python3-scipy armhf 1.11.4-6 [16.9 MB] -Fetched 89.7 MB in 6s (14.9 MB/s) +Fetched 89.7 MB in 1s (66.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19468 files and directories currently installed.) @@ -636,8 +668,8 @@ Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Mar 29 14:51:46 UTC 2024. -Universal Time is now: Fri Mar 29 14:51:46 UTC 2024. +Local time is now: Fri Mar 29 15:04:45 UTC 2024. +Universal Time is now: Fri Mar 29 15:04:45 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:armhf (1:1.1.8-1) ... @@ -746,7 +778,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/presto-0.7.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../presto_0.7.2-1_source.changes +I: user script /srv/workspace/pbuilder/23154/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/23154/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/presto-0.7.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../presto_0.7.2-1_source.changes dpkg-buildpackage: info: source package presto dpkg-buildpackage: info: source version 0.7.2-1 dpkg-buildpackage: info: source distribution unstable @@ -783,15 +819,15 @@ running build running build_py creating /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto -copying presto/Applications.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto -copying presto/Annotation.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto -copying presto/__init__.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto copying presto/Version.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto -copying presto/Multiprocessing.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto -copying presto/Defaults.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto +copying presto/__init__.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto copying presto/IO.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto -copying presto/Sequence.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto copying presto/Commandline.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto +copying presto/Applications.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto +copying presto/Sequence.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto +copying presto/Multiprocessing.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto +copying presto/Defaults.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto +copying presto/Annotation.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto running build_scripts creating build creating build/scripts-3.12 @@ -827,15 +863,15 @@ running build running build_py creating /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto -copying presto/Applications.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto -copying presto/Annotation.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto -copying presto/__init__.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto copying presto/Version.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto -copying presto/Multiprocessing.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto -copying presto/Defaults.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto +copying presto/__init__.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto copying presto/IO.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto -copying presto/Sequence.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto copying presto/Commandline.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto +copying presto/Applications.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto +copying presto/Sequence.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto +copying presto/Multiprocessing.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto +copying presto/Defaults.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto +copying presto/Annotation.py -> /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto running build_scripts creating build/scripts-3.11 copying and adjusting bin/AlignSets.py -> build/scripts-3.11 @@ -922,12 +958,12 @@ OrderedDict({'ID': 'SEQ1', 'TEST1': 'A,B', 'TEST2': '1', 'TEST3': ['First', 'Second']}) OrderedDict({'ID': 'SEQ1', 'TEST1': 'A,B', 'TEST2': '2', 'TEST3': ['First', 'Second']}) OrderedDict({'ID': 'SEQ1', 'TEST1': 'A,B', 'TEST2': '3', 'TEST3': ['First', 'Second']}) -<- test_collapseAnnotation() 0.001 +<- test_collapseAnnotation() 0.000 -> test_getCoordKey() ['MISEQ:132:000000000-A2F3U:1:1101:14340:1555', 'HWI-EAS209_0006_FC706VJ:5:58:5894:21141', 'MS6_33112:1:1101:18371:1066'] ['SRR001666.1', 'SRR735691.1', 'SRR1383326.1', 'SRR1383326.1', 'ERR346596.6'] ['000034_0199_0169', 'GXGJ56Z01AE06X'] -<- test_getCoordKey() 0.001 +<- test_getCoordKey() 0.000 -> test_mergeAnnotation() OrderedDict({'ID': 'SEQ1', 'TEST1': 'A,B,C,C', 'TEST2': '1,2,3', 'TEST3': ['First', 'Second']}) OrderedDict({'ID': 'SEQ1', 'TEST1': 'C,C,A,B', 'TEST2': '3,1,2', 'TEST3': ['First', 'Second']}) @@ -937,7 +973,7 @@ OrderedDict({'ID': 'SEQ1', 'RENAMED2': 'A,B', 'TEST2': [1, 2], 'TEST3': ['First', 'Second']}) OrderedDict({'ID': 'SEQ1', 'TEST1': 'A,B,1,2', 'TEST3': ['First', 'Second']}) OrderedDict({'ID': 'SEQ1', 'TEST1': 'A,B,1,2,First,Second'}) -<- test_renameAnnotation() 0.001 +<- test_renameAnnotation() 0.000 -> test_calculateSetError() Frequency consensus error> REF> CGGCGTAA @@ -955,11 +991,11 @@ SEQ4> CGNN--TA SEQ5> CGGC--AA ERROR> 0.233333 -<- test_calculateSetError() 0.003 +<- test_calculateSetError() 0.001 -> test_deleteSeqPositions() MAX_GAP=0.4> CGGCAA MAX_GAP=0.8> CGGCGTAA -<- test_deleteSeqPositions() 0.002 +<- test_deleteSeqPositions() 0.000 -> test_findGapPositions() MAX_GAP=0.4> [4, 5] MAX_GAP=0.8> [] @@ -967,12 +1003,12 @@ -> test_frequencyConsensus() MIN_FREQ=0.2> CGGCGTAA MIN_FREQ=0.8> CGGCGTNA -<- test_frequencyConsensus() 0.001 +<- test_frequencyConsensus() 0.000 -> test_qualityConsensus() MIN_QUAL=0> CGGCGTAA [90, 90, 36, 36, 16, 16, 72, 90] MIN_QUAL=20> CGGCNNAA [90, 90, 36, 36, 0, 0, 72, 90] MIN_FREQ=0.8> CGGCNNNA [90, 90, 36, 36, 0, 0, 0, 90] -<- test_qualityConsensus() 0.003 +<- test_qualityConsensus() 0.001 -> test_checkSeqEqual() DNA Equality> SEQ1|COUNT=1> CCACGTTTTAGTAATTAATA @@ -999,7 +1035,7 @@ SEQ4|COUNT=4> CCACGTTTTANTAATTAATA EQUAL> True -<- test_checkSeqEqual() 0.001 +<- test_checkSeqEqual() 0.000 -> test_convert454Header() OrderedDict({'ID': '000034_0199_0169', 'LENGTH': '437', 'UACCNO': 'GNDG01201ARRCR'}) OrderedDict({'ID': 'GXGJ56Z01AE06X', 'LENGTH': '222'}) @@ -1007,7 +1043,7 @@ -> test_convertGenbankHeader() OrderedDict({'ID': 'CM000663.2', 'GI': '568336023', 'SOURCE': 'gb', 'DESC': 'Homo_sapiens_chromosome_1_GRCh38_reference_primary_assembly'}) OrderedDict({'ID': 'CM000663.2', 'DESC': 'Homo_sapiens_chromosome_1__GRCh38_reference_primary_assembly'}) -<- test_convertGenbankHeader() 0.001 +<- test_convertGenbankHeader() 0.000 -> test_convertGenericHeader() OrderedDict({'ID': 'gi_568336023_gb_CM000663.2_Homo_sapiens_chromosome_1_GRCh38_reference_primary_assembly'}) OrderedDict({'ID': 'CM000663.2_Homo_sapiens_chromosome_1_GRCh38_reference_primary_assembly'}) @@ -1015,7 +1051,7 @@ OrderedDict({'ID': "Z29978_IGHV1-69*07_Homo_sapiens_F_V-REGION_1..233_233_nt_1_233+58_291_partial_in_5'_and_in_3'_"}) OrderedDict({'ID': 'AB019439_IGHV(III)-22-2*01_Homo_sapiens_P_L-PART1+V-EXON_168065..168119+168222..168262_96_nt_1_96+0_96_'}) OrderedDict({'ID': 'AE000659_TRAV11*01_Homo_sapiens_(P)_V-REGION_85121..85397_276_nt_1_276+42_318_'}) -<- test_convertGenericHeader() 0.002 +<- test_convertGenericHeader() 0.000 -> test_convertIMGTHeader() OrderedDict({'ID': 'IGHV1-18*01', 'SPECIES': 'Homo_sapiens', 'REGION': 'V-REGION', 'FUNCTIONALITY': 'F', 'PARTIAL': 'FALSE', 'ACCESSION': 'M99641'}) OrderedDict({'ID': 'IGHV1-69*07', 'SPECIES': 'Homo_sapiens', 'REGION': 'V-REGION', 'FUNCTIONALITY': 'F', 'PARTIAL': 'TRUE', 'ACCESSION': 'Z29978'}) @@ -1025,7 +1061,7 @@ OrderedDict({'ID': 'IGHV1-69*07'}) OrderedDict({'ID': 'IGHV(III)-22-2*01'}) OrderedDict({'ID': 'TRAV11*01'}) -<- test_convertIMGTHeader() 0.002 +<- test_convertIMGTHeader() 0.001 -> test_convertIlluminaHeader() OrderedDict({'ID': 'MISEQ:132:000000000-A2F3U:1:1101:14340:1555', 'INDEX': 'ATCACG', 'READ': '1'}) OrderedDict({'ID': 'HWI-EAS209_0006_FC706VJ:5:58:5894:21141', 'INDEX': 'ATCACG', 'READ': '1'}) @@ -1037,13 +1073,13 @@ OrderedDict({'ID': 'SRR1383326.1', 'DESC': '1', 'LENGTH': '250'}) OrderedDict({'ID': 'SRR1383326.1', 'READ': '2', 'DESC': '1', 'LENGTH': '250'}) OrderedDict({'ID': 'ERR346596.6', 'DESC': 'BS-DSFCONTROL04:4:000000000-A3F0Y:1:1101:13220:1649/1'}) -<- test_convertSRAHeader() 0.001 +<- test_convertSRAHeader() 0.000 -> test_calculateDistances() -<- test_calculateDistances() 0.006 +<- test_calculateDistances() 0.002 -> test_countMismatches() -<- test_countMismatches() 0.014 +<- test_countMismatches() 0.004 -> test_initializeMismatchDictionary() -<- test_initializeMismatchDictionary() 0.001 +<- test_initializeMismatchDictionary() 0.000 -> test_getFileType() <- test_getFileType() 0.000 -> test_extractAlignment() @@ -1117,7 +1153,7 @@ GAPS> 0 ERROR> 0.000000 -<- test_extractAlignment() 0.002 +<- test_extractAlignment() 0.001 -> test_localAlignment() TEST Ns> SEQ1> @@ -1298,7 +1334,7 @@ GAPS> 0 ERROR> 1.000000 -<- test_localAlignment() 0.382 +<- test_localAlignment() 0.185 -> test_maskSeq() TEST CUT> ID> SEQ|PRIMER=A|BARCODE=CCA @@ -1316,7 +1352,7 @@ ID> SEQ|PRIMER=A|BARCODE=CCA SEQ> CCACGTTTTAGTAATTAATA -<- test_maskSeq() 0.018 +<- test_maskSeq() 0.004 -> test_scoreAlignment() SEQ1> SEQ> CCACGTTTTAGTAATTAATA @@ -1388,16 +1424,16 @@ GAPS> 0 ERROR> 1.000000 -<- test_scoreAlignment() 0.119 +<- test_scoreAlignment() 0.059 -> test_calculateSetError() REF> CGGCGTAA 0.4347826086956522 REF> NNNNNNNN 1.0 -<- test_calculateSetError() 0.001 +<- test_calculateSetError() 0.000 -> test_filterQuality() RESULT> True 25 RESULT> False 5 RESULT> False 0 -<- test_filterQuality() 0.001 +<- test_filterQuality() 0.000 -> test_meanQuality() RESULT> 25 [30, 30, 20, 20, 30, 30, 40, 40] RESULT> 5 [30, 30, 0, 0, 30, 30, 20, 20] @@ -1431,7 +1467,7 @@ N==A> 0 A==-> 1 -==A> 0 -<- test_scoreDNA() 0.005 +<- test_scoreDNA() 0.002 -> test_scoreSeqPair() Default DNA Scores> SEQ1> CGGCGTAA @@ -1616,7 +1652,7 @@ test_deletionUnify (tests.test_UnifyHeaders.TestConvertHeaders.test_deletionUnify) ... ok ---------------------------------------------------------------------- -Ran 38 tests in 0.731s +Ran 38 tests in 0.373s OK (skipped=6) SEQ3> CGGC--AA @@ -1949,7 +1985,7 @@ WEIGHT> 8 ERROR> 0.250000 -<- test_scoreSeqPair() 0.086 +<- test_scoreSeqPair() 0.031 -> test_weightDNA() DNA Weight> SEQ1> 8 @@ -1965,7 +2001,7 @@ SEQ2> 6 SEQ3> 8 SEQ4> 6 -<- test_weightDNA() 0.001 +<- test_weightDNA() 0.000 -> test_consensusUnify() ID> SEQ0|BARCODE=AAAA|SAMPLE=S1 -> SEQ0|BARCODE=AAAA|SAMPLE=S1 ID> SEQ1|BARCODE=AAAA|SAMPLE=S1 -> SEQ1|BARCODE=AAAA|SAMPLE=S1 @@ -1975,7 +2011,7 @@ ID> SEQ5|BARCODE=CCCC|SAMPLE=S2 -> SEQ5|BARCODE=CCCC|SAMPLE=S1 ID> SEQ6|BARCODE=GGGG|SAMPLE=S2 -> SEQ6|BARCODE=GGGG|SAMPLE=S2 ID> SEQ7|BARCODE=GGGG|SAMPLE=S2 -> SEQ7|BARCODE=GGGG|SAMPLE=S2 -<- test_consensusUnify() 0.006 +<- test_consensusUnify() 0.001 -> test_deletionUnify() ID> SEQ0|BARCODE=AAAA|SAMPLE=S1 -> False ID> SEQ1|BARCODE=AAAA|SAMPLE=S1 -> False @@ -1985,7 +2021,7 @@ ID> SEQ5|BARCODE=CCCC|SAMPLE=S2 -> False ID> SEQ6|BARCODE=GGGG|SAMPLE=S2 -> True ID> SEQ7|BARCODE=GGGG|SAMPLE=S2 -> True -<- test_deletionUnify() 0.001 +<- test_deletionUnify() 0.000 I: pybuild pybuild:308: cp -r /build/reproducible-path/presto-0.7.2/bin /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build; rm /build/reproducible-path/presto-0.7.2/tests/test_ClusterSets.py || echo "Test file already removed or moved"; rm: cannot remove '/build/reproducible-path/presto-0.7.2/tests/test_ClusterSets.py': No such file or directory Test file already removed or moved @@ -2027,22 +2063,22 @@ OrderedDict([('ID', 'SEQ1'), ('TEST1', 'A,B'), ('TEST2', '1'), ('TEST3', ['First', 'Second'])]) OrderedDict([('ID', 'SEQ1'), ('TEST1', 'A,B'), ('TEST2', '2'), ('TEST3', ['First', 'Second'])]) OrderedDict([('ID', 'SEQ1'), ('TEST1', 'A,B'), ('TEST2', '3'), ('TEST3', ['First', 'Second'])]) -<- test_collapseAnnotation() 0.001 +<- test_collapseAnnotation() 0.000 -> test_getCoordKey() ['MISEQ:132:000000000-A2F3U:1:1101:14340:1555', 'HWI-EAS209_0006_FC706VJ:5:58:5894:21141', 'MS6_33112:1:1101:18371:1066'] ['SRR001666.1', 'SRR735691.1', 'SRR1383326.1', 'SRR1383326.1', 'ERR346596.6'] ['000034_0199_0169', 'GXGJ56Z01AE06X'] -<- test_getCoordKey() 0.001 +<- test_getCoordKey() 0.000 -> test_mergeAnnotation() OrderedDict([('ID', 'SEQ1'), ('TEST1', 'A,B,C,C'), ('TEST2', '1,2,3'), ('TEST3', ['First', 'Second'])]) OrderedDict([('ID', 'SEQ1'), ('TEST1', 'C,C,A,B'), ('TEST2', '3,1,2'), ('TEST3', ['First', 'Second'])]) -<- test_mergeAnnotation() 0.001 +<- test_mergeAnnotation() 0.000 -> test_renameAnnotation() OrderedDict([('ID', 'SEQ1'), ('RENAMED1', 'A,B'), ('TEST2', [1, 2]), ('TEST3', ['First', 'Second'])]) OrderedDict([('ID', 'SEQ1'), ('RENAMED2', 'A,B'), ('TEST2', [1, 2]), ('TEST3', ['First', 'Second'])]) OrderedDict([('ID', 'SEQ1'), ('TEST1', 'A,B,1,2'), ('TEST3', ['First', 'Second'])]) OrderedDict([('ID', 'SEQ1'), ('TEST1', 'A,B,1,2,First,Second')]) -<- test_renameAnnotation() 0.001 +<- test_renameAnnotation() 0.000 -> test_calculateSetError() Frequency consensus error> REF> CGGCGTAA @@ -2060,24 +2096,24 @@ SEQ4> CGNN--TA SEQ5> CGGC--AA ERROR> 0.233333 -<- test_calculateSetError() 0.003 +<- test_calculateSetError() 0.001 -> test_deleteSeqPositions() MAX_GAP=0.4> CGGCAA MAX_GAP=0.8> CGGCGTAA -<- test_deleteSeqPositions() 0.002 +<- test_deleteSeqPositions() 0.000 -> test_findGapPositions() MAX_GAP=0.4> [4, 5] MAX_GAP=0.8> [] -<- test_findGapPositions() 0.001 +<- test_findGapPositions() 0.000 -> test_frequencyConsensus() MIN_FREQ=0.2> CGGCGTAA MIN_FREQ=0.8> CGGCGTNA -<- test_frequencyConsensus() 0.001 +<- test_frequencyConsensus() 0.000 -> test_qualityConsensus() MIN_QUAL=0> CGGCGTAA [90, 90, 36, 36, 16, 16, 72, 90] MIN_QUAL=20> CGGCNNAA [90, 90, 36, 36, 0, 0, 72, 90] MIN_FREQ=0.8> CGGCNNNA [90, 90, 36, 36, 0, 0, 0, 90] -<- test_qualityConsensus() 0.003 +<- test_qualityConsensus() 0.001 -> test_checkSeqEqual() DNA Equality> SEQ1|COUNT=1> CCACGTTTTAGTAATTAATA @@ -2104,7 +2140,7 @@ SEQ4|COUNT=4> CCACGTTTTANTAATTAATA EQUAL> True -<- test_checkSeqEqual() 0.001 +<- test_checkSeqEqual() 0.000 -> test_convert454Header() OrderedDict([('ID', '000034_0199_0169'), ('LENGTH', '437'), ('UACCNO', 'GNDG01201ARRCR')]) OrderedDict([('ID', 'GXGJ56Z01AE06X'), ('LENGTH', '222')]) @@ -2112,7 +2148,7 @@ -> test_convertGenbankHeader() OrderedDict([('ID', 'CM000663.2'), ('GI', '568336023'), ('SOURCE', 'gb'), ('DESC', 'Homo_sapiens_chromosome_1_GRCh38_reference_primary_assembly')]) OrderedDict([('ID', 'CM000663.2'), ('DESC', 'Homo_sapiens_chromosome_1__GRCh38_reference_primary_assembly')]) -<- test_convertGenbankHeader() 0.001 +<- test_convertGenbankHeader() 0.000 -> test_convertGenericHeader() OrderedDict([('ID', 'gi_568336023_gb_CM000663.2_Homo_sapiens_chromosome_1_GRCh38_reference_primary_assembly')]) OrderedDict([('ID', 'CM000663.2_Homo_sapiens_chromosome_1_GRCh38_reference_primary_assembly')]) @@ -2120,7 +2156,7 @@ OrderedDict([('ID', "Z29978_IGHV1-69*07_Homo_sapiens_F_V-REGION_1..233_233_nt_1_233+58_291_partial_in_5'_and_in_3'_")]) OrderedDict([('ID', 'AB019439_IGHV(III)-22-2*01_Homo_sapiens_P_L-PART1+V-EXON_168065..168119+168222..168262_96_nt_1_96+0_96_')]) OrderedDict([('ID', 'AE000659_TRAV11*01_Homo_sapiens_(P)_V-REGION_85121..85397_276_nt_1_276+42_318_')]) -<- test_convertGenericHeader() 0.002 +<- test_convertGenericHeader() 0.000 -> test_convertIMGTHeader() OrderedDict([('ID', 'IGHV1-18*01'), ('SPECIES', 'Homo_sapiens'), ('REGION', 'V-REGION'), ('FUNCTIONALITY', 'F'), ('PARTIAL', 'FALSE'), ('ACCESSION', 'M99641')]) OrderedDict([('ID', 'IGHV1-69*07'), ('SPECIES', 'Homo_sapiens'), ('REGION', 'V-REGION'), ('FUNCTIONALITY', 'F'), ('PARTIAL', 'TRUE'), ('ACCESSION', 'Z29978')]) @@ -2130,7 +2166,7 @@ OrderedDict([('ID', 'IGHV1-69*07')]) OrderedDict([('ID', 'IGHV(III)-22-2*01')]) OrderedDict([('ID', 'TRAV11*01')]) -<- test_convertIMGTHeader() 0.002 +<- test_convertIMGTHeader() 0.000 -> test_convertIlluminaHeader() OrderedDict([('ID', 'MISEQ:132:000000000-A2F3U:1:1101:14340:1555'), ('INDEX', 'ATCACG'), ('READ', '1')]) OrderedDict([('ID', 'HWI-EAS209_0006_FC706VJ:5:58:5894:21141'), ('INDEX', 'ATCACG'), ('READ', '1')]) @@ -2142,13 +2178,13 @@ OrderedDict([('ID', 'SRR1383326.1'), ('DESC', '1'), ('LENGTH', '250')]) OrderedDict([('ID', 'SRR1383326.1'), ('READ', '2'), ('DESC', '1'), ('LENGTH', '250')]) OrderedDict([('ID', 'ERR346596.6'), ('DESC', 'BS-DSFCONTROL04:4:000000000-A3F0Y:1:1101:13220:1649/1')]) -<- test_convertSRAHeader() 0.001 +<- test_convertSRAHeader() 0.000 -> test_calculateDistances() -<- test_calculateDistances() 0.006 +<- test_calculateDistances() 0.002 -> test_countMismatches() -<- test_countMismatches() 0.015 +<- test_countMismatches() 0.004 -> test_initializeMismatchDictionary() -<- test_initializeMismatchDictionary() 0.001 +<- test_initializeMismatchDictionary() 0.000 -> test_getFileType() <- test_getFileType() 0.000 -> test_extractAlignment() @@ -2222,7 +2258,7 @@ GAPS> 0 ERROR> 0.000000 -<- test_extractAlignment() 0.002 +<- test_extractAlignment() 0.000 -> test_localAlignment() TEST Ns> SEQ1> @@ -2403,7 +2439,7 @@ GAPS> 0 ERROR> 1.000000 -<- test_localAlignment() 0.349 +<- test_localAlignment() 0.161 -> test_maskSeq() TEST CUT> ID> SEQ|PRIMER=A|BARCODE=CCA @@ -2421,7 +2457,7 @@ ID> SEQ|PRIMER=A|BARCODE=CCA SEQ> CCACGTTTTAGTAATTAATA -<- test_maskSeq() 0.018 +<- test_maskSeq() 0.004 -> test_scoreAlignment() SEQ1> SEQ> CCACGTTTTAGTAATTAATA @@ -2493,21 +2529,21 @@ GAPS> 0 ERROR> 1.000000 -<- test_scoreAlignment() 0.113 +<- test_scoreAlignment() 0.027 -> test_calculateSetError() REF> CGGCGTAA 0.4347826086956522 REF> NNNNNNNN 1.0 -<- test_calculateSetError() 0.001 +<- test_calculateSetError() 0.000 -> test_filterQuality() RESULT> True 25 RESULT> False 5 RESULT> False 0 -<- test_filterQuality() 0.001 +<- test_filterQuality() 0.000 -> test_meanQuality() RESULT> 25 [30, 30, 20, 20, 30, 30, 40, 40] RESULT> 5 [30, 30, 0, 0, 30, 30, 20, 20] RESULT> 0 [0, 0, 0, 0, 0, 0, 0, 0] -<- test_meanQuality() 0.001 +<- test_meanQuality() 0.000 -> test_scoreDNA() Default DNA Scores> A==A> 1 @@ -2536,7 +2572,7 @@ N==A> 0 A==-> 1 -==A> 0 -<- test_scoreDNA() 0.005 +<- test_scoreDNA() 0.001 -> test_scoreSeqPair() Default DNA Scores> SEQ1> CGGCGTAA @@ -2705,7 +2741,7 @@ test_deletionUnify (tests.test_UnifyHeaders.TestConvertHeaders.test_deletionUnify) ... ok ---------------------------------------------------------------------- -Ran 38 tests in 0.692s +Ran 38 tests in 0.272s OK (skipped=6) ERROR> 0.750000 @@ -3054,7 +3090,7 @@ WEIGHT> 8 ERROR> 0.250000 -<- test_scoreSeqPair() 0.081 +<- test_scoreSeqPair() 0.021 -> test_weightDNA() DNA Weight> SEQ1> 8 @@ -3070,7 +3106,7 @@ SEQ2> 6 SEQ3> 8 SEQ4> 6 -<- test_weightDNA() 0.001 +<- test_weightDNA() 0.000 -> test_consensusUnify() ID> SEQ0|BARCODE=AAAA|SAMPLE=S1 -> SEQ0|BARCODE=AAAA|SAMPLE=S1 ID> SEQ1|BARCODE=AAAA|SAMPLE=S1 -> SEQ1|BARCODE=AAAA|SAMPLE=S1 @@ -3080,7 +3116,7 @@ ID> SEQ5|BARCODE=CCCC|SAMPLE=S2 -> SEQ5|BARCODE=CCCC|SAMPLE=S1 ID> SEQ6|BARCODE=GGGG|SAMPLE=S2 -> SEQ6|BARCODE=GGGG|SAMPLE=S2 ID> SEQ7|BARCODE=GGGG|SAMPLE=S2 -> SEQ7|BARCODE=GGGG|SAMPLE=S2 -<- test_consensusUnify() 0.006 +<- test_consensusUnify() 0.001 -> test_deletionUnify() ID> SEQ0|BARCODE=AAAA|SAMPLE=S1 -> False ID> SEQ1|BARCODE=AAAA|SAMPLE=S1 -> False @@ -3090,7 +3126,7 @@ ID> SEQ5|BARCODE=CCCC|SAMPLE=S2 -> False ID> SEQ6|BARCODE=GGGG|SAMPLE=S2 -> True ID> SEQ7|BARCODE=GGGG|SAMPLE=S2 -> True -<- test_deletionUnify() 0.001 +<- test_deletionUnify() 0.000 create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -3119,80 +3155,80 @@ creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12 creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages +creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/BuildConsensus.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/AlignSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/ClusterSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/ParseLog.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/PairSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/FilterSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/ParseHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/UnifyHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/MaskPrimers.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/SplitSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/ConvertHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/CollapseSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/CollapseSeq.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/ConvertHeaders.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/UnifyHeaders.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/BuildConsensus.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/EstimateError.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/AssemblePairs.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/MaskPrimers.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/EstimateError.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/AssemblePairs.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Version.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__init__.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/IO.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Commandline.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Applications.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Defaults.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Commandline.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/IO.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Annotation.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Sequence.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Multiprocessing.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Version.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Defaults.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Applications.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Multiprocessing.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Sequence.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Annotation.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__init__.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Version.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/IO.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/__pycache__/Annotation.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Sequence.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Multiprocessing.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Defaults.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/IO.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Sequence.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Commandline.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto -creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/ConvertHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/ClusterSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/ParseLog.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/EstimateError.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/BuildConsensus.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/UnifyHeaders.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/MaskPrimers.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/AssemblePairs.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/CollapseSeq.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/__pycache__/ConvertHeaders.cpython-312.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/FilterSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/CollapseSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/AssemblePairs.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/SplitSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/ParseHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/AlignSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/UnifyHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/BuildConsensus.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/PairSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/MaskPrimers.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/bin/EstimateError.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.12_presto/build/presto/Annotation.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/BuildConsensus.py to BuildConsensus.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/AlignSets.py to AlignSets.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/ClusterSets.py to ClusterSets.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/ParseLog.py to ParseLog.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/PairSeq.py to PairSeq.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/FilterSeq.py to FilterSeq.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/ParseHeaders.py to ParseHeaders.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/UnifyHeaders.py to UnifyHeaders.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/MaskPrimers.py to MaskPrimers.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/SplitSeq.py to SplitSeq.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/ConvertHeaders.py to ConvertHeaders.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/CollapseSeq.py to CollapseSeq.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/EstimateError.py to EstimateError.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/AssemblePairs.py to AssemblePairs.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Version.py to Version.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/IO.py to IO.cpython-312.pyc +/usr/lib/python3.12/dist-packages/presto/IO.py:34: SyntaxWarning: invalid escape sequence '\s' +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Commandline.py to Commandline.cpython-312.pyc byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Applications.py to Applications.cpython-312.pyc /usr/lib/python3.12/dist-packages/presto/Applications.py:61: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/presto/Applications.py:288: SyntaxWarning: invalid escape sequence '\>' +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Sequence.py to Sequence.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Multiprocessing.py to Multiprocessing.cpython-312.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Defaults.py to Defaults.cpython-312.pyc byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Annotation.py to Annotation.cpython-312.pyc /usr/lib/python3.12/dist-packages/presto/Annotation.py:293: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/presto/Annotation.py:368: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/presto/Annotation.py:491: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/presto/Annotation.py:493: SyntaxWarning: invalid escape sequence '\(' /usr/lib/python3.12/dist-packages/presto/Annotation.py:494: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Version.py to Version.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Multiprocessing.py to Multiprocessing.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Defaults.py to Defaults.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/IO.py to IO.cpython-312.pyc -/usr/lib/python3.12/dist-packages/presto/IO.py:34: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Sequence.py to Sequence.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/presto/Commandline.py to Commandline.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/ConvertHeaders.py to ConvertHeaders.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/ClusterSets.py to ClusterSets.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/ParseLog.py to ParseLog.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/FilterSeq.py to FilterSeq.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/CollapseSeq.py to CollapseSeq.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/AssemblePairs.py to AssemblePairs.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/SplitSeq.py to SplitSeq.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/ParseHeaders.py to ParseHeaders.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/AlignSets.py to AlignSets.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/UnifyHeaders.py to UnifyHeaders.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/BuildConsensus.py to BuildConsensus.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/PairSeq.py to PairSeq.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/MaskPrimers.py to MaskPrimers.cpython-312.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.12/dist-packages/bin/EstimateError.py to EstimateError.cpython-312.pyc running install_egg_info running egg_info creating presto.egg-info @@ -3209,34 +3245,34 @@ Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.12/ConvertHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.12/BuildConsensus.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.12/AlignSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.12/ClusterSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.12/ParseLog.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.12/PairSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.12/FilterSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.12/CollapseSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.12/AssemblePairs.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.12/SplitSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.12/ParseHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.12/AlignSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.12/UnifyHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.12/BuildConsensus.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.12/PairSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.12/MaskPrimers.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.12/SplitSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.12/ConvertHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.12/CollapseSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.12/EstimateError.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/ConvertHeaders.py to 755 +copying build/scripts-3.12/AssemblePairs.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/BuildConsensus.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/AlignSets.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/ClusterSets.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/ParseLog.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/PairSeq.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/FilterSeq.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/CollapseSeq.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/AssemblePairs.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/SplitSeq.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/ParseHeaders.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/AlignSets.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/UnifyHeaders.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/BuildConsensus.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/PairSeq.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/MaskPrimers.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/SplitSeq.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/ConvertHeaders.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/CollapseSeq.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/EstimateError.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/AssemblePairs.py to 755 I: pybuild base:305: /usr/bin/python3 setup.py install --root /build/reproducible-path/presto-0.7.2/debian/python3-presto running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. @@ -3258,72 +3294,72 @@ running install_lib creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11 creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages -creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Applications.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto -creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Annotation.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Version.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Sequence.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Applications.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Commandline.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Multiprocessing.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/IO.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Defaults.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Annotation.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__init__.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Version.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Multiprocessing.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Defaults.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/IO.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Sequence.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Commandline.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/ConvertHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/BuildConsensus.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/AlignSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/ClusterSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/ParseLog.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/PairSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/FilterSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/ParseHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/UnifyHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/MaskPrimers.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/SplitSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/ConvertHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/CollapseSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/__pycache__ copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/__pycache__/AssemblePairs.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/__pycache__/CollapseSeq.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/__pycache__ copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/__pycache__/ConvertHeaders.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/__pycache__ copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/__pycache__/EstimateError.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/__pycache__ copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/__pycache__/BuildConsensus.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/__pycache__/MaskPrimers.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/__pycache__/CollapseSeq.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/__pycache__ copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/__pycache__/UnifyHeaders.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/__pycache__ -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/FilterSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/CollapseSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/AssemblePairs.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/SplitSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/ParseHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/AlignSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/UnifyHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/BuildConsensus.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/PairSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/MaskPrimers.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/__pycache__/MaskPrimers.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/__pycache__ copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/EstimateError.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Applications.py to Applications.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Annotation.py to Annotation.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Version.py to Version.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Multiprocessing.py to Multiprocessing.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Defaults.py to Defaults.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/IO.py to IO.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Sequence.py to Sequence.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Commandline.py to Commandline.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/ConvertHeaders.py to ConvertHeaders.cpython-311.pyc +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/bin/AssemblePairs.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin +creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Version.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__init__.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/IO.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Commandline.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Applications.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto +creating /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/IO.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Applications.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Annotation.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Sequence.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Defaults.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Version.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Multiprocessing.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/__pycache__/Commandline.cpython-311.pyc -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__pycache__ +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Sequence.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Multiprocessing.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Defaults.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto +copying /build/reproducible-path/presto-0.7.2/.pybuild/cpython3_3.11_presto/build/presto/Annotation.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/BuildConsensus.py to BuildConsensus.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/AlignSets.py to AlignSets.cpython-311.pyc byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/ClusterSets.py to ClusterSets.cpython-311.pyc byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/ParseLog.py to ParseLog.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/PairSeq.py to PairSeq.cpython-311.pyc byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/FilterSeq.py to FilterSeq.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/CollapseSeq.py to CollapseSeq.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/AssemblePairs.py to AssemblePairs.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/SplitSeq.py to SplitSeq.cpython-311.pyc byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/ParseHeaders.py to ParseHeaders.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/AlignSets.py to AlignSets.cpython-311.pyc byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/UnifyHeaders.py to UnifyHeaders.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/BuildConsensus.py to BuildConsensus.cpython-311.pyc -byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/PairSeq.py to PairSeq.cpython-311.pyc byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/MaskPrimers.py to MaskPrimers.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/SplitSeq.py to SplitSeq.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/ConvertHeaders.py to ConvertHeaders.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/CollapseSeq.py to CollapseSeq.cpython-311.pyc byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/EstimateError.py to EstimateError.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/bin/AssemblePairs.py to AssemblePairs.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Version.py to Version.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/IO.py to IO.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Commandline.py to Commandline.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Applications.py to Applications.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Sequence.py to Sequence.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Multiprocessing.py to Multiprocessing.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Defaults.py to Defaults.cpython-311.pyc +byte-compiling /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto/Annotation.py to Annotation.cpython-311.pyc running install_egg_info running egg_info writing presto.egg-info/PKG-INFO @@ -3337,34 +3373,34 @@ Copying presto.egg-info to /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/lib/python3.11/dist-packages/presto-0.7.2.egg-info Skipping SOURCES.txt running install_scripts -copying build/scripts-3.11/ConvertHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.11/BuildConsensus.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.11/AlignSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.11/ClusterSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.11/ParseLog.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.11/PairSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.11/FilterSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.11/CollapseSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.11/AssemblePairs.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.11/SplitSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.11/ParseHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.11/AlignSets.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.11/UnifyHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.11/BuildConsensus.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -copying build/scripts-3.11/PairSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.11/MaskPrimers.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.11/SplitSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.11/ConvertHeaders.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +copying build/scripts-3.11/CollapseSeq.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin copying build/scripts-3.11/EstimateError.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/ConvertHeaders.py to 755 +copying build/scripts-3.11/AssemblePairs.py -> /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/BuildConsensus.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/AlignSets.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/ClusterSets.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/ParseLog.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/PairSeq.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/FilterSeq.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/CollapseSeq.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/AssemblePairs.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/SplitSeq.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/ParseHeaders.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/AlignSets.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/UnifyHeaders.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/BuildConsensus.py to 755 -changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/PairSeq.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/MaskPrimers.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/SplitSeq.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/ConvertHeaders.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/CollapseSeq.py to 755 changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/EstimateError.py to 755 +changing mode of /build/reproducible-path/presto-0.7.2/debian/python3-presto/usr/bin/AssemblePairs.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/presto-0.7.2' dh_install @@ -3395,8 +3431,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-presto' in '../python3-presto_0.7.2-1_armhf.deb'. dpkg-deb: building package 'presto' in '../presto_0.7.2-1_all.deb'. +dpkg-deb: building package 'python3-presto' in '../python3-presto_0.7.2-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../presto_0.7.2-1_armhf.buildinfo dpkg-genchanges --build=binary -O../presto_0.7.2-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3405,12 +3441,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/23154/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/23154/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/24238 and its subdirectories -I: Current time: Fri Mar 29 03:03:00 -12 2024 -I: pbuilder-time-stamp: 1711724580 +I: removing directory /srv/workspace/pbuilder/23154 and its subdirectories +I: Current time: Sat Mar 30 05:08:58 +14 2024 +I: pbuilder-time-stamp: 1711724938