Diff of the two buildlogs: -- --- b1/build.log 2024-05-19 14:04:06.834331353 +0000 +++ b2/build.log 2024-05-19 14:16:48.065957580 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun May 19 01:57:40 -12 2024 -I: pbuilder-time-stamp: 1716127060 +I: Current time: Mon May 20 04:11:58 +14 2024 +I: pbuilder-time-stamp: 1716127918 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying do-not-overflow-int.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/9165/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/21946/tmp/hooks/D01_modify_environment starting +debug: Running on virt32z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 19 14:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/21946/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/21946/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='58556487b2204509865032489d4ebf4c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='9165' - PS1='# ' - PS2='> ' + INVOCATION_ID=b0dc4468460241adbe078af531e85f3a + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=21946 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gZOwtLOR/pbuilderrc_cfqn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gZOwtLOR/b1 --logfile b1/build.log pinfish_0.1.0+ds-4.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gZOwtLOR/pbuilderrc_dDsM --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gZOwtLOR/b2 --logfile b2/build.log pinfish_0.1.0+ds-4.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64b 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 17 07:43 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/9165/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 18 07:44 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/21946/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -200,7 +232,7 @@ Get: 74 http://deb.debian.org/debian unstable/main armhf libhts3t64 armhf 1.19+ds-1.1+b1 [395 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libncurses6 armhf 6.5-2 [81.8 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf samtools armhf 1.19.2-1+b1 [614 kB] -Fetched 71.5 MB in 1s (48.9 MB/s) +Fetched 71.5 MB in 1s (56.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19463 files and directories currently installed.) @@ -519,7 +551,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pinfish-0.1.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pinfish_0.1.0+ds-4_source.changes +I: user script /srv/workspace/pbuilder/21946/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/21946/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pinfish-0.1.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pinfish_0.1.0+ds-4_source.changes dpkg-buildpackage: info: source package pinfish dpkg-buildpackage: info: source version 0.1.0+ds-4 dpkg-buildpackage: info: source distribution unstable @@ -541,55 +577,54 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 3 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff + cd _build && go install -trimpath -v -p 4 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff internal/unsafeheader internal/goarch internal/coverage/rtcov internal/cpu +internal/godebugs internal/abi internal/chacha8rand -internal/bytealg -internal/godebugs internal/goexperiment internal/goos +internal/bytealg runtime/internal/atomic runtime/internal/math runtime/internal/sys runtime/internal/syscall internal/race sync/atomic -unicode unicode/utf8 -runtime +unicode encoding internal/itoa math/bits -math cmp -slices crypto/internal/alias crypto/internal/boring/sig +math +slices +runtime unicode/utf16 internal/nettrace log/internal +crypto/subtle internal/reflectlite sync -crypto/subtle +internal/singleflight internal/testlog internal/bisect -internal/singleflight runtime/cgo -internal/godebug errors +sort io strconv bytes strings reflect -bufio -sort internal/oserror syscall +bufio internal/safefilepath path github.com/biogo/biogo/feat @@ -598,48 +633,49 @@ hash crypto crypto/internal/randutil -math/rand -vendor/golang.org/x/net/dns/dnsmessage -internal/fmtsort +internal/godebug internal/syscall/unix time internal/syscall/execenv +math/rand +vendor/golang.org/x/net/dns/dnsmessage +internal/fmtsort encoding/binary +internal/poll +io/fs +context crypto/md5 crypto/cipher encoding/base64 crypto/internal/boring -crypto/sha1 internal/intern +crypto/sha1 net/netip hash/crc32 +os text/tabwriter container/heap -internal/poll -io/fs -context -os -fmt io/ioutil -net path/filepath +fmt +net os/exec github.com/biogo/biogo/alphabet flag encoding/csv +math/big github.com/biogo/biogo/seq +database/sql/driver github.com/biogo/biogo/feat/genome github.com/biogo/biogo/io/seqio -github.com/biogo/biogo/seq/linear github.com/biogo/biogo/io/seqio/fasta -math/big -github.com/biogo/biogo/io/featio/gff -database/sql/driver +github.com/biogo/biogo/seq/linear encoding/hex encoding/json -crypto/rand +github.com/biogo/biogo/io/featio/gff log compress/flate +crypto/rand github.com/biogo/biogo/io/seqio/fastq net/url compress/gzip @@ -649,15 +685,15 @@ github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/bam -github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff +github.com/nanoporetech/pinfish/polish_clusters github.com/google/uuid github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_test - cd _build && go test -vet=off -v -p 3 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff + cd _build && go test -vet=off -v -p 4 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff ? github.com/nanoporetech/pinfish/cluster_gff [no test files] ? github.com/nanoporetech/pinfish/collapse_partials [no test files] ? github.com/nanoporetech/pinfish/polish_clusters [no test files] @@ -697,8 +733,8 @@ dh_installdeb -O--builddirectory=_build -O--buildsystem=golang dh_golang -O--builddirectory=_build -O--buildsystem=golang dh_gencontrol -O--builddirectory=_build -O--buildsystem=golang -dpkg-gencontrol: warning: Depends field of package pinfish-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Static-Built-Using} unused, but is defined +dpkg-gencontrol: warning: Depends field of package pinfish-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--builddirectory=_build -O--buildsystem=golang dh_builddeb -O--builddirectory=_build -O--buildsystem=golang dpkg-deb: building package 'pinfish' in '../pinfish_0.1.0+ds-4_armhf.deb'. @@ -710,12 +746,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/21946/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/21946/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/9165 and its subdirectories -I: Current time: Sun May 19 02:04:02 -12 2024 -I: pbuilder-time-stamp: 1716127442 +I: removing directory /srv/workspace/pbuilder/21946 and its subdirectories +I: Current time: Mon May 20 04:16:44 +14 2024 +I: pbuilder-time-stamp: 1716128204