Diff of the two buildlogs: -- --- b1/build.log 2025-01-24 13:47:20.392790654 +0000 +++ b2/build.log 2025-01-24 14:14:11.708099185 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jan 24 01:27:13 -12 2025 -I: pbuilder-time-stamp: 1737725233 +I: Current time: Sat Jan 25 03:48:19 +14 2025 +I: pbuilder-time-stamp: 1737726499 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying remove-recogniser-tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/7013/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1370/tmp/hooks/D01_modify_environment starting +debug: Running on ff4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 24 13:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1370/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1370/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='a54985233a3747f6908da4b6a5ddf74c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='7013' - PS1='# ' - PS2='> ' + INVOCATION_ID=c998526b1406413980db89258b62630c + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1370 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ccUJm96B/pbuilderrc_Gucy --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ccUJm96B/b1 --logfile b1/build.log oscar4_5.2.0+dfsg-3.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ccUJm96B/pbuilderrc_RtJI --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ccUJm96B/b2 --logfile b2/build.log oscar4_5.2.0+dfsg-3.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64c 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-armmp-lpae #1 SMP Debian 6.1.124-1 (2025-01-12) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/7013/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1370/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -453,7 +485,7 @@ Get: 313 http://deb.debian.org/debian unstable/main armhf maven-repo-helper all 1.11 [142 kB] Get: 314 http://deb.debian.org/debian unstable/main armhf unzip armhf 6.0-28 [152 kB] Get: 315 http://deb.debian.org/debian unstable/main armhf maven-debian-helper all 2.6.7 [108 kB] -Fetched 337 MB in 7s (51.6 MB/s) +Fetched 337 MB in 22s (15.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19557 files and directories currently installed.) @@ -1944,7 +1976,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/oscar4-5.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../oscar4_5.2.0+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/1370/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1370/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/oscar4-5.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../oscar4_5.2.0+dfsg-3_source.changes dpkg-buildpackage: info: source package oscar4 dpkg-buildpackage: info: source version 5.2.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -2572,24 +2608,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.2.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 0.956 s] -[INFO] oscar4-core ........................................ SUCCESS [ 11.265 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 3.970 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 3.993 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 1.563 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 3.501 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 2.518 s] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.873 s] -[INFO] oscar4-opsin ....................................... SUCCESS [ 0.661 s] -[INFO] oscar4-api ......................................... SUCCESS [ 0.721 s] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.357 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.294 s] -[INFO] oscar4-data ........................................ SUCCESS [ 0.752 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 1.226 s] +[INFO] oscar4-core ........................................ SUCCESS [ 13.515 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 3.912 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 4.838 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 1.651 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [ 4.156 s] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 3.394 s] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.928 s] +[INFO] oscar4-opsin ....................................... SUCCESS [ 0.716 s] +[INFO] oscar4-api ......................................... SUCCESS [ 0.786 s] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.372 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.277 s] +[INFO] oscar4-data ........................................ SUCCESS [ 0.762 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 32.100 s -[INFO] Finished at: 2025-01-24T13:30:41Z +[INFO] Total time: 37.373 s +[INFO] Finished at: 2025-01-24T13:53:36Z [INFO] ------------------------------------------------------------------------ dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/oscar4-5.2.0\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/oscar4-5.2.0\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/oscar4-5.2.0\+dfsg/debian/maven-repo --batch-mode test @@ -2644,37 +2680,37 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.177 s - in uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.03 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTagTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTagTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest -[INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest +[INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.205 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.126 s - in uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTagTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTagTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest -[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 s - in uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest +[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.142 s - in uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest -[WARNING] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.145 s - in uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest +[WARNING] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.117 s - in uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.783 s - in uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest +[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.802 s - in uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest [INFO] [INFO] Results: [INFO] @@ -2705,27 +2741,27 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.247 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.406 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest -SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". -SLF4J: Defaulting to no-operation (NOP) logger implementation -SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.256 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.658 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.201 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.037 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest +SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". +SLF4J: Defaulting to no-operation (NOP) logger implementation +SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.107 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest [INFO] [INFO] Results: [INFO] @@ -2760,13 +2796,13 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 30.736 s - in uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.216 s - in uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 38.667 s - in uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.073 s - in uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.448 s - in uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.135 s - in uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.354 s - in uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest [INFO] [INFO] Results: [INFO] @@ -2797,19 +2833,19 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest +[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.207 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest -[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.201 s - in uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.726 s - in uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.862 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest [INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest -[WARNING] Tests run: 35, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.079 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest +[WARNING] Tests run: 35, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.111 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest [INFO] [INFO] Results: [INFO] @@ -2840,29 +2876,29 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.166 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.21 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.838 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.293 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.425 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest +[WARNING] Tests run: 11, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 53.608 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest -[WARNING] Tests run: 8, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 14.217 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest +[WARNING] Tests run: 8, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 22.323 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest -[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.028 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest +[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.023 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.805 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest -[WARNING] Tests run: 11, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 55.876 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.972 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest [INFO] [INFO] Results: [INFO] @@ -2893,23 +2929,23 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.276 s - in uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 103.91 s - in uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 11.817 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest [INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.474 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.176 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.311 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest [INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 11.223 s - in uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 18.224 s - in uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 103.633 s - in uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.324 s - in uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest [INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.825 s - in uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest [INFO] [INFO] Results: [INFO] @@ -2944,7 +2980,7 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 169.244 s - in uk.ac.cam.ch.wwmm.oscarpattern.PatternRecogniserTest +[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 221.799 s - in uk.ac.cam.ch.wwmm.oscarpattern.PatternRecogniserTest [INFO] [INFO] Results: [INFO] @@ -2975,13 +3011,13 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- +[INFO] Running uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.076 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.328 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.108 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.654 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest [INFO] [INFO] Results: [INFO] @@ -3016,7 +3052,7 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 162.8 s - in uk.ac.cam.ch.wwmm.oscar.OscarTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 270.612 s - in uk.ac.cam.ch.wwmm.oscar.OscarTest [INFO] [INFO] Results: [INFO] @@ -3048,7 +3084,7 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.296 s - in uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.372 s - in uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest [INFO] [INFO] Results: [INFO] @@ -3101,19 +3137,19 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RPNodeTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.638 s - in uk.ac.cam.ch.wwmm.oscardata.RPNodeTest -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.915 s - in uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.OscarDataTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.024 s - in uk.ac.cam.ch.wwmm.oscardata.OscarDataTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 10.028 s - in uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RPNodeTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in uk.ac.cam.ch.wwmm.oscardata.RPNodeTest [INFO] Running uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.211 s - in uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.513 s - in uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest [INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataParserTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.664 s - in uk.ac.cam.ch.wwmm.oscardata.DataParserTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.8 s - in uk.ac.cam.ch.wwmm.oscardata.DataParserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.OscarDataTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in uk.ac.cam.ch.wwmm.oscardata.OscarDataTest [INFO] [INFO] Results: [INFO] @@ -3122,24 +3158,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.2.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 1.062 s] -[INFO] oscar4-core ........................................ SUCCESS [ 35.916 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 34.615 s] -[INFO] oscar4-obo ......................................... SUCCESS [01:06 min] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 35.044 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [01:51 min] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [02:39 min] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [03:20 min] -[INFO] oscar4-opsin ....................................... SUCCESS [ 37.861 s] -[INFO] oscar4-api ......................................... SUCCESS [03:14 min] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 31.470 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.082 s] -[INFO] oscar4-data ........................................ SUCCESS [ 36.834 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 1.118 s] +[INFO] oscar4-core ........................................ SUCCESS [ 36.217 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 34.757 s] +[INFO] oscar4-obo ......................................... SUCCESS [01:14 min] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 35.269 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [02:02 min] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [02:53 min] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [04:14 min] +[INFO] oscar4-opsin ....................................... SUCCESS [ 44.169 s] +[INFO] oscar4-api ......................................... SUCCESS [05:04 min] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 32.210 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.170 s] +[INFO] oscar4-data ........................................ SUCCESS [ 44.042 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 15:46 min -[INFO] Finished at: 2025-01-24T13:46:33Z +[INFO] Total time: 19:17 min +[INFO] Finished at: 2025-01-24T14:12:59Z [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_prep @@ -3335,24 +3371,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.2.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 1.624 s] -[INFO] oscar4-core ........................................ SUCCESS [ 0.192 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.147 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 0.197 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.120 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.135 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.137 s] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.176 s] -[INFO] oscar4-opsin ....................................... SUCCESS [ 0.118 s] -[INFO] oscar4-api ......................................... SUCCESS [ 0.092 s] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.077 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.075 s] -[INFO] oscar4-data ........................................ SUCCESS [ 0.093 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 1.953 s] +[INFO] oscar4-core ........................................ SUCCESS [ 0.251 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.241 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 0.331 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.131 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.222 s] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.288 s] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.152 s] +[INFO] oscar4-opsin ....................................... SUCCESS [ 0.122 s] +[INFO] oscar4-api ......................................... SUCCESS [ 0.134 s] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.090 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.081 s] +[INFO] oscar4-data ........................................ SUCCESS [ 0.118 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 4.005 s -[INFO] Finished at: 2025-01-24T13:46:43Z +[INFO] Total time: 5.138 s +[INFO] Finished at: 2025-01-24T14:13:15Z [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -pliboscar4-java --base-directory=/build/reproducible-path/oscar4-5.2.0\+dfsg --non-explore Analysing pom.xml... @@ -3402,12 +3438,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1370/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1370/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/7013 and its subdirectories -I: Current time: Fri Jan 24 01:47:15 -12 2025 -I: pbuilder-time-stamp: 1737726435 +I: removing directory /srv/workspace/pbuilder/1370 and its subdirectories +I: Current time: Sat Jan 25 04:14:07 +14 2025 +I: pbuilder-time-stamp: 1737728047