Diff of the two buildlogs:

--
--- b1/build.log	2024-11-06 07:27:09.444749517 +0000
+++ b2/build.log	2024-11-06 06:36:36.064464224 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Tue Nov  5 18:37:22 -12 2024
-I: pbuilder-time-stamp: 1730875042
+I: Current time: Wed Nov  6 18:08:55 +14 2024
+I: pbuilder-time-stamp: 1730866135
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -32,52 +32,84 @@
 dpkg-source: info: applying doc_no_mdanalysis_sphinx.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/3099/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/22080/tmp/hooks/D01_modify_environment starting
+debug: Running on virt64c.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Nov  6 04:09 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/22080/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/22080/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='armhf'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='armhf'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
+  BASH_VERSION='5.2.32(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=armhf
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=arm
+  HOST_ARCH=armhf
   IFS=' 	
   '
-  INVOCATION_ID='4f74355ee06c40ce915cb91ceb69caf2'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='3099'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=0fdcfd9f8cf84663b190707ea2392b9a
+  LANG=C
+  LANGUAGE=it_CH:it
+  LC_ALL=C
+  MACHTYPE=arm-unknown-linux-gnueabihf
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnueabihf
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=22080
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cWBUxRGR/pbuilderrc_qfnC --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cWBUxRGR/b1 --logfile b1/build.log mdanalysis_2.7.0-5.dsc'
-  SUDO_GID='110'
-  SUDO_UID='103'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://10.0.0.15:3142/'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cWBUxRGR/pbuilderrc_981m --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cWBUxRGR/b2 --logfile b2/build.log mdanalysis_2.7.0-5.dsc'
+  SUDO_GID=113
+  SUDO_UID=107
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://10.0.0.15:3142/
 I: uname -a
-  Linux virt32z 6.1.0-26-armmp-lpae #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux
 I: ls -l /bin
   lrwxrwxrwx 1 root root 7 Aug  4 21:30 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/3099/tmp/hooks/D02_print_environment finished
+I: user script /srv/workspace/pbuilder/22080/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -440,7 +472,7 @@
 Get: 259 http://deb.debian.org/debian unstable/main armhf python3-sphinx-sitemap all 2.6.0-1 [8508 B]
 Get: 260 http://deb.debian.org/debian unstable/main armhf python3-sphinxcontrib.bibtex all 2.6.2-1 [32.4 kB]
 Get: 261 http://deb.debian.org/debian unstable/main armhf python3-tqdm all 4.66.5-1 [90.1 kB]
-Fetched 170 MB in 3s (65.2 MB/s)
+Fetched 170 MB in 4s (38.1 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package fonts-lato.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19688 files and directories currently installed.)
@@ -1284,8 +1316,8 @@
 Setting up tzdata (2024b-3) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Wed Nov  6 06:38:41 UTC 2024.
-Universal Time is now:  Wed Nov  6 06:38:41 UTC 2024.
+Local time is now:      Wed Nov  6 04:10:59 UTC 2024.
+Universal Time is now:  Wed Nov  6 04:10:59 UTC 2024.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up unicode-data (15.1.0-1) ...
@@ -1528,7 +1560,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/mdanalysis-2.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../mdanalysis_2.7.0-5_source.changes
+I: user script /srv/workspace/pbuilder/22080/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/22080/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/mdanalysis-2.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../mdanalysis_2.7.0-5_source.changes
 dpkg-buildpackage: info: source package mdanalysis
 dpkg-buildpackage: info: source version 2.7.0-5
 dpkg-buildpackage: info: source distribution unstable
@@ -1648,203 +1684,203 @@
 running build
 running build_py
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis
-copying MDAnalysis/units.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis
-copying MDAnalysis/authors.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis
-copying MDAnalysis/version.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis
 copying MDAnalysis/due.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis
-copying MDAnalysis/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis
 copying MDAnalysis/exceptions.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis
-creating build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
-copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
-copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
-copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
-copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
-copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
-copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
-copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
+copying MDAnalysis/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis
+copying MDAnalysis/authors.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis
+copying MDAnalysis/units.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis
+copying MDAnalysis/version.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis
+creating build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
+copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
+copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
+copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
+copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
+copying MDAnalysis/converters/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
+copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
+copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
+copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
 copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
 copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
 copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
 copying MDAnalysis/analysis/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
 copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
 copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/distances.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
 copying MDAnalysis/analysis/psa.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
 copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/distances.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
-creating build/lib.linux-armv7l-cpython-312/MDAnalysis/core
-copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
-copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
-copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
-copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
-copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
-copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
-copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
-copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
-copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
-creating build/lib.linux-armv7l-cpython-312/MDAnalysis/tests
-copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/tests
-copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/tests
+copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
+copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/guessers.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
 copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
 copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/tables.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
 copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
 copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
 copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
 copying MDAnalysis/topology/core.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
 copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
 copying MDAnalysis/topology/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
 copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
-creating build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/correlations.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/util.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/_distopia.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
-copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/tables.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
+copying MDAnalysis/topology/guessers.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization
-copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization
-copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization
 copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization
+copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization
+copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization
+creating build/lib.linux-armv7l-cpython-312/MDAnalysis/tests
+copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/tests
+copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/tests
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
-copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
+copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
+copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
 copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
 copying MDAnalysis/transformations/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
-copying MDAnalysis/transformations/nojump.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
-copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
-copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
 copying MDAnalysis/transformations/fit.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
-copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
+copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
+copying MDAnalysis/transformations/nojump.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
 copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
-creating build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
-copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
-copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
-copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
-copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
-copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
+copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations
+creating build/lib.linux-armv7l-cpython-312/MDAnalysis/core
+copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
+copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
+copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
+copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
+copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
+copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
+copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
+copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
+copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/core
+creating build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/_distopia.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/correlations.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
+copying MDAnalysis/lib/util.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
 copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
 copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
 copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/TRC.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
 copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
 copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
 copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
 copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
 copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
-creating build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
-copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
-copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
-copying MDAnalysis/converters/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
-copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
-copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
-copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
-copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
-copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/converters
-creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data
-copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data
-copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data
+copying MDAnalysis/coordinates/TRC.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates
+creating build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
+copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
+copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
+copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
+copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
+copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
+copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
+copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/selections
+creating build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
+copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
+copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
+copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
+copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
+copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary
+creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hbonds
+copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hbonds
+copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hbonds
+creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/legacy
+copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/legacy
+copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/legacy
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2
-copying MDAnalysis/analysis/hole2/utils.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2
 copying MDAnalysis/analysis/hole2/templates.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2
-copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2
 copying MDAnalysis/analysis/hole2/hole.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2
-creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds
-copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds
-copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds
-copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds
-copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds
+copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2
+copying MDAnalysis/analysis/hole2/utils.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
-copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
 copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
-copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
 copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
-copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
+copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
 copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
-creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hbonds
-copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hbonds
-copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hbonds
-creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/legacy
-copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/legacy
-copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/legacy
+copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
+copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
+creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds
+copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds
+copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds
+copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds
+copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds
+creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data
+copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data
+copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction
+copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction
 copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction
 copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction
-copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering
-copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering
+copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering
 copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering
+copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering
 copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering
-copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr
-copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr
 copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr
-copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr
 copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr
+copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr
+copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr
 creating build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats
 copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats
 running egg_info
@@ -2300,8 +2336,8 @@
 
 !!
   check.warn(importable)
-copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data
 copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data
+copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data
 copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
 copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
 copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-armv7l-cpython-312/MDAnalysis/lib
@@ -2685,7 +2721,7 @@
 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/MDAnalysis/lib/formats/cython_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/cython_util.cpython-312-arm-linux-gnueabihf.so
 building 'MDAnalysis.analysis.encore.cutils' extension
 creating build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore
-arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/cutils.o -std=c99 -funroll-loops -fsigned-zeros -O3
+arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/cutils.o -std=c99 -funroll-loops -fsigned-zeros -O1
 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
@@ -2697,7 +2733,7 @@
 building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension
 creating build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering
 creating build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/src
-arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.7.0/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.12 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -funroll-loops -fsigned-zeros -O3
+arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.7.0/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.12 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -funroll-loops -fsigned-zeros -O1
 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
@@ -2705,12 +2741,12 @@
 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
    17 | #warning "Using deprecated NumPy API, disable it with " \
       |  ^~~~~~~
-arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.7.0/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.12 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -funroll-loops -fsigned-zeros -O3
+arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.7.0/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.12 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -funroll-loops -fsigned-zeros -O1
 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-312-arm-linux-gnueabihf.so
 building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension
 creating build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/src
-arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.7.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.12 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -funroll-loops -fsigned-zeros -O3
-arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.7.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.12 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -funroll-loops -fsigned-zeros -O3
+arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.7.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.12 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -funroll-loops -fsigned-zeros -O1
+arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.7.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.7.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.12 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -funroll-loops -fsigned-zeros -O1
 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
@@ -2758,290 +2794,290 @@
 running install_lib
 creating build/bdist.linux-armv7l/wheel
 creating build/bdist.linux-armv7l/wheel/MDAnalysis
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/converters
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hbonds
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hbonds
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/legacy
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/legacy
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hole2
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2/templates.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hole2
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hole2
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2/hole.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hole2
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hole2
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hole2
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/rms.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/psa.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/rms.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/cutils.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/cutils.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/src
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering/include
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering/src
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering/include
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hbonds
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hbonds
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/legacy
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/legacy
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/core
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/tests
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/tests
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/guessers.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/topology/guessers.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/tests
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/tests
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/nojump.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/core
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/nsgrid.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_augment.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libdcd.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/cython_util.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/cython_util.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libmdaxdr.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libdcd.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances_openmp.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances_openmp.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_cutil.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_augment.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/nsgrid.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/libmdanalysis
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_distopia.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/util.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/log.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_cutil.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/qcprot.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_distopia.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_transformations.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/include
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/libmdanalysis
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/util.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/lib/qcprot.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/authors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/version.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/nojump.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
 creating build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TRC.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/timestep.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
 copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
-creating build/bdist.linux-armv7l/wheel/MDAnalysis/converters
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
-copying build/lib.linux-armv7l-cpython-312/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/TRC.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/coordinates/timestep.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
+creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
+copying build/lib.linux-armv7l-cpython-312/MDAnalysis/version.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
 running install_egg_info
 Copying MDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/./MDAnalysis-2.7.0.egg-info
 running install_scripts
 creating build/bdist.linux-armv7l/wheel/MDAnalysis-2.7.0.dist-info/WHEEL
-creating '/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/.tmp-t75l_5tp/MDAnalysis-2.7.0-cp312-cp312-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
+creating '/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/.tmp-ipl__6jn/MDAnalysis-2.7.0-cp312-cp312-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
 adding 'MDAnalysis/__init__.py'
 adding 'MDAnalysis/authors.py'
 adding 'MDAnalysis/due.py'
@@ -3314,38 +3350,38 @@
 parsing bibtex file /build/reproducible-path/mdanalysis-2.7.0/package/doc/sphinx/source/references.bib... parsed 66 entries
 locale_dir /build/reproducible-path/mdanalysis-2.7.0/package/doc/sphinx/source/locales/en/LC_MESSAGES does not exist
 loading intersphinx inventory 'h5py' from https://docs.h5py.org/en/stable/objects.inv...
+WARNING: failed to reach any of the inventories with the following issues:
+intersphinx inventory 'https://docs.h5py.org/en/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='docs.h5py.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf018f150>: Failed to establish a new connection: [Errno 111] Connection refused')))
 loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv...
 loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv...
-WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://docs.h5py.org/en/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='docs.h5py.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf56a3c0>: Failed to establish a new connection: [Errno 111] Connection refused')))
 loading intersphinx inventory 'gsd' from https://gsd.readthedocs.io/en/stable/objects.inv...
+loading intersphinx inventory 'maplotlib' from https://matplotlib.org/stable/objects.inv...
 WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf56a6d8>: Failed to establish a new connection: [Errno 111] Connection refused')))
+intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf018f6d8>: Failed to establish a new connection: [Errno 111] Connection refused')))
 WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://gsd.readthedocs.io/en/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='gsd.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf56ade0>: Failed to establish a new connection: [Errno 111] Connection refused')))
-loading intersphinx inventory 'maplotlib' from https://matplotlib.org/stable/objects.inv...
-loading intersphinx inventory 'griddataformats' from https://mdanalysis.org/GridDataFormats/objects.inv...
+intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf018f750>: Failed to establish a new connection: [Errno 111] Connection refused')))
+WARNING: failed to reach any of the inventories with the following issues:
+intersphinx inventory 'https://gsd.readthedocs.io/en/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='gsd.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf018faf8>: Failed to establish a new connection: [Errno 111] Connection refused')))
 WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf56aaf8>: Failed to establish a new connection: [Errno 111] Connection refused')))
+intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf01b1048>: Failed to establish a new connection: [Errno 111] Connection refused')))
+loading intersphinx inventory 'griddataformats' from https://mdanalysis.org/GridDataFormats/objects.inv...
 loading intersphinx inventory 'pmda' from https://mdanalysis.org/pmda/objects.inv...
+WARNING: failed to reach any of the inventories with the following issues:
+intersphinx inventory 'https://mdanalysis.org/GridDataFormats/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /GridDataFormats/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf01b1300>: Failed to establish a new connection: [Errno 111] Connection refused')))
+WARNING: failed to reach any of the inventories with the following issues:
+intersphinx inventory 'https://mdanalysis.org/pmda/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /pmda/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf018fff0>: Failed to establish a new connection: [Errno 111] Connection refused')))
 loading intersphinx inventory 'networkx' from https://networkx.org/documentation/stable/objects.inv...
+WARNING: failed to reach any of the inventories with the following issues:
+intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf018f9f0>: Failed to establish a new connection: [Errno 111] Connection refused')))
 loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv...
 WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://mdanalysis.org/GridDataFormats/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /GridDataFormats/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf5c6f78>: Failed to establish a new connection: [Errno 111] Connection refused')))
+intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf01f7f18>: Failed to establish a new connection: [Errno 111] Connection refused')))
 loading intersphinx inventory 'parmed' from https://parmed.github.io/ParmEd/html/objects.inv...
 loading intersphinx inventory 'rdkit' from https://rdkit.org/docs/objects.inv...
 WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf5875d0>: Failed to establish a new connection: [Errno 111] Connection refused')))
-WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://mdanalysis.org/pmda/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /pmda/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf56acd8>: Failed to establish a new connection: [Errno 111] Connection refused')))
-WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf587a98>: Failed to establish a new connection: [Errno 111] Connection refused')))
+intersphinx inventory 'https://parmed.github.io/ParmEd/html/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='parmed.github.io', port=443): Max retries exceeded with url: /ParmEd/html/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf01b10f0>: Failed to establish a new connection: [Errno 111] Connection refused')))
 WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf56a618>: Failed to establish a new connection: [Errno 111] Connection refused')))
-WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://rdkit.org/docs/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='rdkit.org', port=443): Max retries exceeded with url: /docs/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf59b090>: Failed to establish a new connection: [Errno 111] Connection refused')))
-WARNING: failed to reach any of the inventories with the following issues:
-intersphinx inventory 'https://parmed.github.io/ParmEd/html/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='parmed.github.io', port=443): Max retries exceeded with url: /ParmEd/html/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xaf587cf0>: Failed to establish a new connection: [Errno 111] Connection refused')))
+intersphinx inventory 'https://rdkit.org/docs/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='rdkit.org', port=443): Max retries exceeded with url: /docs/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0xf01b1708>: Failed to establish a new connection: [Errno 111] Connection refused')))
 locale_dir /build/reproducible-path/mdanalysis-2.7.0/package/doc/sphinx/source/locales/en/LC_MESSAGES does not exist
 building [mo]: targets for 0 po files that are out of date
 writing output... 
@@ -3409,7 +3445,8 @@
 Didn't find DistanceMatrix.atoms in MDAnalysis.analysis.diffusionmap
 Didn't find DistanceMatrix.results.dist_matrix in MDAnalysis.analysis.diffusionmap
 reading sources... [  6%] documentation_pages/analysis/dihedrals
-Matplotlib created a temporary cache directory at /tmp/matplotlib-gmmt7ppw because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
+Matplotlib created a temporary cache directory at /tmp/matplotlib-6tp3v4oz because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
+Matplotlib is building the font cache; this may take a moment.
 Didn't find Dihedral.results.angles in MDAnalysis.analysis.dihedrals
 Didn't find Ramachandran.results.angles in MDAnalysis.analysis.dihedrals
 Didn't find Janin.results.angles in MDAnalysis.analysis.dihedrals
@@ -4071,7 +4108,7 @@
 platform linux -- Python 3.12.7+, pytest-8.3.3, pluggy-1.5.0
 rootdir: /build/reproducible-path/mdanalysis-2.7.0/testsuite
 configfile: setup.cfg
-plugins: hypothesis-6.116.0, typeguard-4.4.1
+plugins: typeguard-4.4.1, hypothesis-6.116.0
 collected 19229 items / 6 skipped
 
 testsuite/MDAnalysisTests/analysis/test_align.py ....................... [  0%]
@@ -4287,7 +4324,7 @@
 ........................................................................ [ 39%]
 .........................................................                [ 39%]
 testsuite/MDAnalysisTests/formats/test_libdcd.py ....................... [ 39%]
-........................................................................ [ 39%]
+.......................X................................................ [ 39%]
 ......                                                                   [ 39%]
 testsuite/MDAnalysisTests/formats/test_libmdaxdr.py .................... [ 40%]
 ........................................................................ [ 40%]
@@ -4618,7 +4655,7 @@
 
 MDAnalysisTests/analysis/test_bat.py: 9 warnings
 MDAnalysisTests/coordinates/test_mol2.py: 3 warnings
-  /build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/topology/MOL2Parser.py:234: UserWarning: Unknown elements found for some atoms: {'c3', 'oh', 'hc', 'h1', 'ho'}. These have been given an empty element record.
+  /build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/topology/MOL2Parser.py:234: UserWarning: Unknown elements found for some atoms: {'oh', 'ho', 'c3', 'h1', 'hc'}. These have been given an empty element record.
     warnings.warn("Unknown elements found for some "
 
 MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_neqbox
@@ -4655,7 +4692,7 @@
 MDAnalysisTests/analysis/test_encore.py: 5 warnings
 MDAnalysisTests/parallelism/test_multiprocessing.py: 34 warnings
 MDAnalysisTests/visualization/test_streamlines.py: 3 warnings
-  /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=17469) is multi-threaded, use of fork() may lead to deadlocks in the child.
+  /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=10175) is multi-threaded, use of fork() may lead to deadlocks in the child.
     self.pid = os.fork()
 
 MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_plane_circle
@@ -4949,8 +4986,8 @@
     warnings.warn("{} does not support data selection. Reverting to "
 
 MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_formats
-MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader11]
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xb3c75ed8>
+MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader13]
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xf4c34f28>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1532, in __del__
@@ -4998,7 +5035,7 @@
     warnings.warn(
 
 MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_empty_dcd
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xb3c75ed8>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xf4c34f28>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1532, in __del__
@@ -5014,7 +5051,7 @@
 MDAnalysisTests/coordinates/test_dcd.py::test_write_no_natoms
 MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_time_unit
 MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_unit
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function DCDWriter.__del__ at 0xb3bed4d8>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function DCDWriter.__del__ at 0xf4baa528>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/DCD.py", line 482, in __del__
@@ -5082,7 +5119,7 @@
     warnings.warn(
 
 MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_wrong_driver
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xb3c75ed8>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xf4c34f28>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1532, in __del__
@@ -5150,7 +5187,7 @@
     warnings.warn("Found no information for attr: '{}'"
 
 MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_reader_no_h5py
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xb3c75ed8>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xf4c34f28>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1530, in __del__
@@ -5171,7 +5208,7 @@
 
 MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_time_unit
 MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_unit
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xb3c75ed8>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xf4c34f28>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1530, in __del__
@@ -5236,7 +5273,7 @@
     warnings.warn("Found missing chainIDs."
 
 MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterErrorsWarnings::test_zero_atoms_VE
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function WriterBase.__del__ at 0xb3c78078>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function WriterBase.__del__ at 0xf4c370c8>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1612, in __del__
@@ -5315,7 +5352,7 @@
     warnings.warn(
 
 MDAnalysisTests/coordinates/test_tng.py::test_pytng_not_present_raises
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xb3c75ed8>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xf4c34f28>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1530, in __del__
@@ -5336,7 +5373,7 @@
     warnings.warn(
 
 MDAnalysisTests/coordinates/test_trj.py::test_trj_no_natoms
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xb3c75ed8>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function ReaderBase.__del__ at 0xf4c34f28>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1532, in __del__
@@ -5375,7 +5412,7 @@
     warnings.warn("Timestep didn't have dimensions information, "
 
 MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_long_title
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function WriterBase.__del__ at 0xb3c78078>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function WriterBase.__del__ at 0xf4c370c8>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1612, in __del__
@@ -5419,7 +5456,7 @@
     warnings.warn(wmsg)
 
 MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_no_container
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function XDRBaseWriter.__del__ at 0xb0a13028>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function XDRBaseWriter.__del__ at 0xf19cf078>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/XDR.py", line 324, in __del__
@@ -5432,7 +5469,7 @@
     warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
 
 MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_no_container
-  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function XDRBaseWriter.__del__ at 0xb0a13028>
+  /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function XDRBaseWriter.__del__ at 0xf19cf078>
   
   Traceback (most recent call last):
     File "/build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/XDR.py", line 324, in __del__
@@ -5446,22 +5483,22 @@
 
 MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_io_fails
 MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_value_fails
-  /build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/XDR.py:222: UserWarning: Reading offsets from /tmp/pytest-of-pbuilder1/pytest-0/xtc0/.adk_oplsaa.xtc_offsets.npz failed, reading offsets from trajectory instead.
+  /build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/XDR.py:222: UserWarning: Reading offsets from /tmp/pytest-of-pbuilder2/pytest-0/xtc0/.adk_oplsaa.xtc_offsets.npz failed, reading offsets from trajectory instead.
   Consider setting 'refresh_offsets=True' when loading your Universe.
     warnings.warn(f"Reading offsets from {fname} failed, "
 
 MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_readonly
-  /build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/XDR.py:202: UserWarning: Cannot write lock/offset file in same location as /tmp/pytest-of-pbuilder1/pytest-0/test_persistent_offsets_readon0/adk_oplsaa.xtc. Using slow offset calculation.
+  /build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/XDR.py:202: UserWarning: Cannot write lock/offset file in same location as /tmp/pytest-of-pbuilder2/pytest-0/test_persistent_offsets_readon0/adk_oplsaa.xtc. Using slow offset calculation.
     warnings.warn(f"Cannot write lock/offset file in same location as "
 
 MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_io_fails
 MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_value_fails
-  /build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/XDR.py:222: UserWarning: Reading offsets from /tmp/pytest-of-pbuilder1/pytest-0/xtc1/.adk_oplsaa.trr_offsets.npz failed, reading offsets from trajectory instead.
+  /build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/XDR.py:222: UserWarning: Reading offsets from /tmp/pytest-of-pbuilder2/pytest-0/xtc1/.adk_oplsaa.trr_offsets.npz failed, reading offsets from trajectory instead.
   Consider setting 'refresh_offsets=True' when loading your Universe.
     warnings.warn(f"Reading offsets from {fname} failed, "
 
 MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_readonly
-  /build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/XDR.py:202: UserWarning: Cannot write lock/offset file in same location as /tmp/pytest-of-pbuilder1/pytest-0/test_persistent_offsets_readon0/adk_oplsaa.trr. Using slow offset calculation.
+  /build/reproducible-path/mdanalysis-2.7.0/.pybuild/cpython3_3.12_mdanalysis/build/MDAnalysis/coordinates/XDR.py:202: UserWarning: Cannot write lock/offset file in same location as /tmp/pytest-of-pbuilder2/pytest-0/test_persistent_offsets_readon0/adk_oplsaa.trr. Using slow offset calculation.
     warnings.warn(f"Cannot write lock/offset file in same location as "
 
 MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[atoms]
@@ -5633,19 +5670,19 @@
   See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info.
 
 MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f0]
-  /usr/lib/python3/dist-packages/_pytest/python.py:159: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder1/pytest-0/test_pickle_with_write_mode_un0/pickle/test.pdb') mode='wb' closefd=True>
+  /usr/lib/python3/dist-packages/_pytest/python.py:159: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder2/pytest-0/test_pickle_with_write_mode_un0/pickle/test.pdb') mode='wb' closefd=True>
     result = testfunction(**testargs)
   Enable tracemalloc to get traceback where the object was allocated.
   See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info.
 
 MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f1]
-  /usr/lib/python3/dist-packages/_pytest/python.py:159: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder1/pytest-0/test_pickle_with_write_mode_un1/pickle/test.pdb') mode='xb' closefd=True>
+  /usr/lib/python3/dist-packages/_pytest/python.py:159: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder2/pytest-0/test_pickle_with_write_mode_un1/pickle/test.pdb') mode='xb' closefd=True>
     result = testfunction(**testargs)
   Enable tracemalloc to get traceback where the object was allocated.
   See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info.
 
 MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f2]
-  /usr/lib/python3/dist-packages/_pytest/python.py:159: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder1/pytest-0/test_pickle_with_write_mode_un2/pickle/test.pdb') mode='ab' closefd=True>
+  /usr/lib/python3/dist-packages/_pytest/python.py:159: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder2/pytest-0/test_pickle_with_write_mode_un2/pickle/test.pdb') mode='ab' closefd=True>
     result = testfunction(**testargs)
   Enable tracemalloc to get traceback where the object was allocated.
   See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info.
@@ -5655,7 +5692,7 @@
     warnings.warn(wmsg, DeprecationWarning)
 
 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
-= 18632 passed, 594 skipped, 7 xfailed, 2 xpassed, 27465 warnings in 2147.21s (0:35:47) =
+= 18631 passed, 594 skipped, 7 xfailed, 3 xpassed, 27465 warnings in 6487.07s (1:48:07) =
 --- Logging error ---
 Traceback (most recent call last):
   File "/usr/lib/python3/dist-packages/duecredit/utils.py", line 209, in wrapped_func
@@ -5695,7 +5732,7 @@
 Call stack:
   File "/usr/lib/python3/dist-packages/duecredit/utils.py", line 211, in wrapped_func
     lgr.warning(
-Message: "DueCredit internal failure while running <function DueSwitch.dump at 0xb3a86708>: PermissionError(13, 'Permission denied'). Please report to developers at https://github.com/duecredit/duecredit/issues"
+Message: "DueCredit internal failure while running <function DueSwitch.dump at 0xf4a44758>: PermissionError(13, 'Permission denied'). Please report to developers at https://github.com/duecredit/duecredit/issues"
 Arguments: ()
 
 DueCredit Report:
@@ -5703,14 +5740,14 @@
   - Bond-Angle-Torsions Coordinate Transformation / MDAnalysis.analysis.bat.BAT (v 2.7.0) [3]
   - Dielectric analysis / MDAnalysis.analysis.dielectric (v 2.7.0) [4]
   - ENCORE Ensemble Comparison / MDAnalysis.analysis.encore (v 2.7.0) [5]
-  - HOLE trajectory analysis with orderparameters, HOLE program / MDAnalysis.analysis.hole2 (v 2.7.0) [6, 7, 8]
+  - HOLE program, HOLE trajectory analysis with orderparameters / MDAnalysis.analysis.hole2 (v 2.7.0) [6, 7, 8]
   - Hydrogen bond analysis implementation / MDAnalysis.analysis.hydrogenbonds.hbond_analysis (v 2.7.0) [9]
   - Hydrogen bonding autocorrelation time / MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel (v 2.7.0) [10]
   - LeafletFinder algorithm / MDAnalysis.analysis.leaflet (v 2.7.0) [2]
-  - FCA fast correlation algorithm, Mean Squared Displacements with tidynamics / MDAnalysis.analysis.msd (v 2.7.0) [11, 12]
+  - Mean Squared Displacements with tidynamics, FCA fast correlation algorithm / MDAnalysis.analysis.msd (v 2.7.0) [11, 12]
   - Cumulative overlap / MDAnalysis.analysis.pca (v 2.7.0) [13]
   - Path Similarity Analysis algorithm and implementation / MDAnalysis.analysis.psa (v 2.7.0) [14]
-  - MDAnalysis trajectory reader/writer of the H5MDformat, Specifications of the H5MD standard / MDAnalysis.coordinates.H5MD (v 2.7.0, 1.1) [15, 16]
+  - MDAnalysis trajectory reader/writer of the H5MDformat, Specifications of the H5MD standard / MDAnalysis.coordinates.H5MD (v 1.1, 2.7.0) [15, 16]
   - MMTF Reader / MDAnalysis.coordinates.MMTF (v 2.7.0) [17]
   - The TNG paper / MDAnalysis.coordinates.TNG (v 2.7.0) [18]
   - QCProt implementation / MDAnalysis.lib.qcprot (v 2.7.0) [19, 20]
@@ -5761,8 +5798,8 @@
 dpkg-gencontrol: warning: package python-mdanalysis-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined
    dh_md5sums -O--buildsystem=pybuild
    dh_builddeb -O--buildsystem=pybuild
-dpkg-deb: building package 'python3-mdanalysis-dbgsym' in '../python3-mdanalysis-dbgsym_2.7.0-5_armhf.deb'.
 dpkg-deb: building package 'python3-mdanalysis' in '../python3-mdanalysis_2.7.0-5_armhf.deb'.
+dpkg-deb: building package 'python3-mdanalysis-dbgsym' in '../python3-mdanalysis-dbgsym_2.7.0-5_armhf.deb'.
 dpkg-deb: building package 'python-mdanalysis-doc' in '../python-mdanalysis-doc_2.7.0-5_all.deb'.
  dpkg-genbuildinfo --build=binary -O../mdanalysis_2.7.0-5_armhf.buildinfo
  dpkg-genchanges --build=binary -O../mdanalysis_2.7.0-5_armhf.changes
@@ -5772,12 +5809,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: not including original source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/22080/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/22080/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/3099 and its subdirectories
-I: Current time: Tue Nov  5 19:27:05 -12 2024
-I: pbuilder-time-stamp: 1730878025
+I: removing directory /srv/workspace/pbuilder/22080 and its subdirectories
+I: Current time: Wed Nov  6 20:36:29 +14 2024
+I: pbuilder-time-stamp: 1730874989