Diff of the two buildlogs: -- --- b1/build.log 2024-04-27 12:45:37.279575271 +0000 +++ b2/build.log 2024-04-27 12:50:03.716240701 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Apr 27 00:33:54 -12 2024 -I: pbuilder-time-stamp: 1714221234 +I: Current time: Sun Apr 28 02:45:47 +14 2024 +I: pbuilder-time-stamp: 1714221947 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying missing-use-carp.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/27282/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/22274/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 27 12:46 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/22274/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/22274/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='3c521d73923a4d07ad21b44695d96425' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='27282' - PS1='# ' - PS2='> ' + INVOCATION_ID=3b9079f0b6f147b29a2ecab9741c6ecb + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=22274 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ToQAUN5H/pbuilderrc_LgVh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ToQAUN5H/b1 --logfile b1/build.log libfreecontact-perl_0.08-9.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ToQAUN5H/pbuilderrc_yYH1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ToQAUN5H/b2 --logfile b2/build.log libfreecontact-perl_0.08-9.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux wbq0 6.1.0-20-armmp #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 25 07:46 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/27282/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 27 07:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/22274/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -152,7 +184,7 @@ Get: 34 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libfreecontact0t64 armhf 1.0.21-13.1+b1 [61.7 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libfreecontact-dev armhf 1.0.21-13.1+b1 [75.3 kB] -Fetched 20.8 MB in 2s (8842 kB/s) +Fetched 20.8 MB in 1s (31.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19440 files and directories currently installed.) @@ -313,7 +345,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libfreecontact-perl-0.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfreecontact-perl_0.08-9_source.changes +I: user script /srv/workspace/pbuilder/22274/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/22274/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libfreecontact-perl-0.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libfreecontact-perl_0.08-9_source.changes dpkg-buildpackage: info: source package libfreecontact-perl dpkg-buildpackage: info: source version 0.08-9 dpkg-buildpackage: info: source distribution unstable @@ -343,7 +379,7 @@ Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_build - make -j3 + make -j4 make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' Running Mkbootstrap for FreeContact () "/usr/bin/perl" "/usr/share/perl/5.38/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.38/ExtUtils/typemap' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/perlobject.map' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/typemap' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/typemap' FreeContact.xs > FreeContact.xsc @@ -368,7 +404,7 @@ Manifying 1 pod document make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_test - make -j3 test TEST_VERBOSE=1 + make -j4 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t @@ -379,28 +415,28 @@ ok 3 - FreeContact::Predictor->can(...) ok will use 1 OMP threads -488/1000total weight (variation) of alignment = 620.777515304633 +total weight (variation) of alignment = 620.777515304633 -seq weight loop for 1000 seqs took 0.469465 secs +seq weight loop for 1000 seqs took 0.194546 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.871142 secs +calculated pair frequency table in 0.360609 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 66.8737 secs, inverted matrix (incl LUf) in 199.741 secs +LU factorization took 23.7377 secs, inverted matrix (incl LUf) in 61.2358 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 -all done in 202.663 secs +all done in 62.2368 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 -seq weight loop for 1000 seqs took 0.454043 secs +seq weight loop for 1000 seqs took 0.144273 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.726245 secs +calculated pair frequency table in 0.216594 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) @@ -418,17 +454,17 @@ cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... -shrank covariance matrix in 101.787 secs +shrank covariance matrix in 29.4968 secs will try rho 0.00178064, exact solution  iteration = 1will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 1.3402 secs +calculated pair frequency table in 0.207205 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 69.4986 secs, inverted matrix (incl LUf) in 204.054 secs +LU factorization took 18.9297 secs, inverted matrix (incl LUf) in 50.9585 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 @@ -447,13 +483,13 @@ ok 10 - wtot precision test ok All tests successful. -Files=2, Tests=13, 518 wallclock secs ( 0.17 usr 0.04 sys + 510.69 cusr 4.53 csys = 515.43 CPU) +Files=2, Tests=13, 148 wallclock secs ( 0.08 usr 0.00 sys + 108.42 cusr 0.24 csys = 108.74 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libfreecontact-perl/ - make -j3 install DESTDIR=/build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j4 install DESTDIR=/build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 Manifying 1 pod document @@ -484,8 +520,8 @@ make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_md5sums dh_builddeb -dpkg-deb: building package 'libfreecontact-perl-dbgsym' in '../libfreecontact-perl-dbgsym_0.08-9_armhf.deb'. dpkg-deb: building package 'libfreecontact-perl' in '../libfreecontact-perl_0.08-9_armhf.deb'. +dpkg-deb: building package 'libfreecontact-perl-dbgsym' in '../libfreecontact-perl-dbgsym_0.08-9_armhf.deb'. dpkg-genbuildinfo --build=binary -O../libfreecontact-perl_0.08-9_armhf.buildinfo dpkg-genchanges --build=binary -O../libfreecontact-perl_0.08-9_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -493,12 +529,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/22274/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/22274/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/27282 and its subdirectories -I: Current time: Sat Apr 27 00:45:33 -12 2024 -I: pbuilder-time-stamp: 1714221933 +I: removing directory /srv/workspace/pbuilder/22274 and its subdirectories +I: Current time: Sun Apr 28 02:49:59 +14 2024 +I: pbuilder-time-stamp: 1714222199