Diff of the two buildlogs: -- --- b1/build.log 2024-06-07 23:17:03.262500177 +0000 +++ b2/build.log 2024-06-07 23:18:48.530024831 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jun 7 11:15:58 -12 2024 -I: pbuilder-time-stamp: 1717802158 +I: Current time: Sat Jun 8 13:17:13 +14 2024 +I: pbuilder-time-stamp: 1717802233 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/14083/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/23325/tmp/hooks/D01_modify_environment starting +debug: Running on ff4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 7 23:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/23325/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/23325/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='19d84b7e44834b74b8faab5dfc546fc8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='14083' - PS1='# ' - PS2='> ' + INVOCATION_ID=716e61e9b0d5465cb0ea71537353e7f8 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=23325 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LIwPtqdb/pbuilderrc_farg --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LIwPtqdb/b1 --logfile b1/build.log libbio-primerdesigner-perl_0.07-8.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LIwPtqdb/pbuilderrc_kxhC --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LIwPtqdb/b2 --logfile b2/build.log libbio-primerdesigner-perl_0.07-8.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64z 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 5 07:43 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/14083/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 6 07:44 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/23325/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -191,7 +223,7 @@ Get: 62 http://deb.debian.org/debian unstable/main armhf libtest-pod-perl all 1.52-3 [12.6 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf ncbi-epcr armhf 2.3.12-1-9 [148 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf primer3 armhf 2.6.1-4 [182 kB] -Fetched 22.1 MB in 0s (80.1 MB/s) +Fetched 22.1 MB in 2s (9872 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19463 files and directories currently installed.) @@ -473,7 +505,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbio-primerdesigner-perl-0.07/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-primerdesigner-perl_0.07-8_source.changes +I: user script /srv/workspace/pbuilder/23325/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/23325/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbio-primerdesigner-perl-0.07/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-primerdesigner-perl_0.07-8_source.changes dpkg-buildpackage: info: source package libbio-primerdesigner-perl dpkg-buildpackage: info: source version 0.07-8 dpkg-buildpackage: info: source distribution unstable @@ -519,25 +555,25 @@ t/pod-coverage.t ..... 1..8 ok 1 - Pod coverage on Bio::PrimerDesigner -ok 2 - Pod coverage on Bio::PrimerDesigner::Remote -ok 3 - Pod coverage on Bio::PrimerDesigner::primer3 -ok 4 - Pod coverage on Bio::PrimerDesigner::Result -ok 5 - Pod coverage on Bio::PrimerDesigner::Tables -ok 6 - Pod coverage on Bio::PrimerDesigner::epcr -ok 7 - Pod coverage on Bio::PrimerDesigner::ispcr -ok 8 - Pod coverage on Bio::PrimerDesigner::Config +ok 2 - Pod coverage on Bio::PrimerDesigner::Result +ok 3 - Pod coverage on Bio::PrimerDesigner::Config +ok 4 - Pod coverage on Bio::PrimerDesigner::ispcr +ok 5 - Pod coverage on Bio::PrimerDesigner::epcr +ok 6 - Pod coverage on Bio::PrimerDesigner::primer3 +ok 7 - Pod coverage on Bio::PrimerDesigner::Remote +ok 8 - Pod coverage on Bio::PrimerDesigner::Tables ok t/pod.t .............. 1..9 -ok 1 - POD test for blib/script/primer_designer -ok 2 - POD test for blib/lib/Bio/PrimerDesigner.pm -ok 3 - POD test for blib/lib/Bio/PrimerDesigner/Remote.pm -ok 4 - POD test for blib/lib/Bio/PrimerDesigner/primer3.pm -ok 5 - POD test for blib/lib/Bio/PrimerDesigner/Result.pm -ok 6 - POD test for blib/lib/Bio/PrimerDesigner/Tables.pm -ok 7 - POD test for blib/lib/Bio/PrimerDesigner/epcr.pm -ok 8 - POD test for blib/lib/Bio/PrimerDesigner/ispcr.pm -ok 9 - POD test for blib/lib/Bio/PrimerDesigner/Config.pm +ok 1 - POD test for blib/lib/Bio/PrimerDesigner.pm +ok 2 - POD test for blib/lib/Bio/PrimerDesigner/Result.pm +ok 3 - POD test for blib/lib/Bio/PrimerDesigner/Config.pm +ok 4 - POD test for blib/lib/Bio/PrimerDesigner/ispcr.pm +ok 5 - POD test for blib/lib/Bio/PrimerDesigner/epcr.pm +ok 6 - POD test for blib/lib/Bio/PrimerDesigner/primer3.pm +ok 7 - POD test for blib/lib/Bio/PrimerDesigner/Remote.pm +ok 8 - POD test for blib/lib/Bio/PrimerDesigner/Tables.pm +ok 9 - POD test for blib/script/primer_designer ok Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. @@ -611,7 +647,7 @@ ok 10 # skip Can't get remote server call to work ok All tests successful. -Files=7, Tests=67, 2 wallclock secs ( 0.06 usr 0.04 sys + 1.94 cusr 0.20 csys = 2.24 CPU) +Files=7, Tests=67, 3 wallclock secs ( 0.11 usr 0.04 sys + 2.56 cusr 0.24 csys = 2.95 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-primerdesigner-perl-0.07' create-stamp debian/debhelper-build-stamp @@ -624,21 +660,21 @@ Building Bio-PrimerDesigner Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man1/primer_designer.1p Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner.pm -Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Remote.pm -Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/primer3.pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Result.pm -Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Tables.pm -Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/epcr.pm -Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/ispcr.pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Config.pm +Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/ispcr.pm +Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/epcr.pm +Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/primer3.pm +Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Remote.pm +Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Tables.pm +Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner.3pm -Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Result.3pm +Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Remote.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::primer3.3pm -Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Tables.3pm -Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm -Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::ispcr.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::epcr.3pm -Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Remote.3pm +Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::ispcr.3pm +Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Result.3pm +Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Tables.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/bin/primer_designer # remove empty manpage without whatis entry rm -f -v /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm @@ -666,12 +702,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/23325/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/23325/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/14083 and its subdirectories -I: Current time: Fri Jun 7 11:16:59 -12 2024 -I: pbuilder-time-stamp: 1717802219 +I: removing directory /srv/workspace/pbuilder/23325 and its subdirectories +I: Current time: Sat Jun 8 13:18:44 +14 2024 +I: pbuilder-time-stamp: 1717802324