Diff of the two buildlogs:
--
--- b1/build.log 2025-03-06 10:00:01.459434993 +0000
+++ b2/build.log 2025-03-06 10:04:25.831557421 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Wed Mar 5 21:52:05 -12 2025
-I: pbuilder-time-stamp: 1741254725
+I: Current time: Fri Mar 7 00:00:32 +14 2025
+I: pbuilder-time-stamp: 1741255232
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
@@ -26,52 +26,84 @@
dpkg-source: info: applying set-zlib-after-setting-default-libs.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/29960/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/4232/tmp/hooks/D01_modify_environment starting
+debug: Running on virt64z.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Mar 6 10:00 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/4232/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/4232/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='armhf'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
- DISTRIBUTION='unstable'
- HOME='/root'
- HOST_ARCH='armhf'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=armhf
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
+ DIRSTACK=()
+ DISTRIBUTION=unstable
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=arm
+ HOST_ARCH=armhf
IFS='
'
- INVOCATION_ID='b53e4f1d67b64d918955ffa31435c8d4'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='29960'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=82afe1a224054956847be412643c7ad6
+ LANG=C
+ LANGUAGE=it_CH:it
+ LC_ALL=C
+ MACHTYPE=arm-unknown-linux-gnueabihf
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnueabihf
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=4232
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tX5jPBTX/pbuilderrc_t2nE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tX5jPBTX/b1 --logfile b1/build.log hyphy_2.5.69+dfsg-1.dsc'
- SUDO_GID='113'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://10.0.0.15:3142/'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tX5jPBTX/pbuilderrc_3k4m --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tX5jPBTX/b2 --logfile b2/build.log hyphy_2.5.69+dfsg-1.dsc'
+ SUDO_GID=110
+ SUDO_UID=103
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://10.0.0.15:3142/
I: uname -a
- Linux ff4a 6.1.0-31-armmp-lpae #1 SMP Debian 6.1.128-1 (2025-02-07) armv7l GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-31-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/29960/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/4232/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -264,7 +296,7 @@
Get: 137 http://deb.debian.org/debian unstable/main armhf python3.13-dev armhf 3.13.2-1 [505 kB]
Get: 138 http://deb.debian.org/debian unstable/main armhf python3-dev armhf 3.13.2-2 [26.1 kB]
Get: 139 http://deb.debian.org/debian unstable/main armhf python3-all-dev armhf 3.13.2-2 [1064 B]
-Fetched 74.3 MB in 5s (15.8 MB/s)
+Fetched 74.3 MB in 6s (11.7 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libpython3.13-minimal:armhf.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19508 files and directories currently installed.)
@@ -718,8 +750,8 @@
Setting up tzdata (2025a-2) ...
Current default time zone: 'Etc/UTC'
-Local time is now: Thu Mar 6 09:53:29 UTC 2025.
-Universal Time is now: Thu Mar 6 09:53:29 UTC 2025.
+Local time is now: Thu Mar 6 10:01:23 UTC 2025.
+Universal Time is now: Thu Mar 6 10:01:23 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up autotools-dev (20220109.1) ...
@@ -850,7 +882,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/hyphy-2.5.69+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hyphy_2.5.69+dfsg-1_source.changes
+I: user script /srv/workspace/pbuilder/4232/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/4232/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/hyphy-2.5.69+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../hyphy_2.5.69+dfsg-1_source.changes
dpkg-buildpackage: info: source package hyphy
dpkg-buildpackage: info: source version 2.5.69+dfsg-1
dpkg-buildpackage: info: source distribution unstable
@@ -919,8 +955,8 @@
CMakeLists.txt:701 (makeLink)
This warning is for project developers. Use -Wno-dev to suppress it.
--- Configuring done (9.1s)
--- Generating done (0.3s)
+-- Configuring done (5.0s)
+-- Generating done (0.2s)
CMake Warning:
Manually-specified variables were not used by the project:
@@ -940,7 +976,7 @@
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg'
dh_auto_build -- MP MPI
- cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1
+ cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1
make[2]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.69+dfsg -B/build/reproducible-path/hyphy-2.5.69+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 MP
@@ -955,13 +991,13 @@
make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/build
make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-arm-linux-gnueabihf'
-[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o
-[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o
[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o
+[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o
+[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o
+[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllist.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -MF CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/_hyExecutionContext.cpp
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -MF CMakeFiles/hyphy.dir/src/core/alignment.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/alignment.cpp
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -MF CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/associative_list.cpp
-[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllist.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/avllist.cpp.o -MF CMakeFiles/hyphy.dir/src/core/avllist.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/avllist.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/avllist.cpp
[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o -MF CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/avllistx.cpp
@@ -993,10 +1029,10 @@
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/dataset_filter.cpp.o -MF CMakeFiles/hyphy.dir/src/core/dataset_filter.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/dataset_filter.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter.cpp
[ 25%] Building CXX object CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o -MF CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter_numeric.cpp
-[ 25%] Building CXX object CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o
-/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o -MF CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/fisher_exact.cpp
[ 30%] Building CXX object CMakeFiles/hyphy.dir/src/core/formula.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/formula.cpp.o -MF CMakeFiles/hyphy.dir/src/core/formula.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/formula.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/formula.cpp
+[ 30%] Building CXX object CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o
+/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o -MF CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/fisher_exact.cpp
[ 30%] Building CXX object CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o -MF CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/formula_parsing_context.cpp
[ 30%] Building CXX object CMakeFiles/hyphy.dir/src/core/fstring.cpp.o
@@ -1118,13 +1154,13 @@
make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/build
make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-arm-linux-gnueabihf'
-[ 0%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o
-[ 0%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o
[ 0%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o
+[ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o
+[ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o
+[ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/_hyExecutionContext.cpp
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/alignment.cpp
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/associative_list.cpp
-[ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/avllist.cpp
[ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/avllistx.cpp
@@ -1276,9 +1312,9 @@
-type f,l \
-executable \
-exec cp -v '{}' . \;
-'obj-arm-linux-gnueabihf/hyphy' -> './hyphy'
-'obj-arm-linux-gnueabihf/HYPHYMPI' -> './HYPHYMPI'
'obj-arm-linux-gnueabihf/HYPHYMP' -> './HYPHYMP'
+'obj-arm-linux-gnueabihf/HYPHYMPI' -> './HYPHYMPI'
+'obj-arm-linux-gnueabihf/hyphy' -> './hyphy'
./run_unit_tests.sh
./tests/hbltests/UnitTests/HBLCommands/Abs.bf
./tests/hbltests/UnitTests/HBLCommands/Add.bf
@@ -1387,7 +1423,7 @@
dh_testroot -O--buildsystem=cmake
dh_prep -O--buildsystem=cmake
dh_auto_install -O--buildsystem=cmake
- cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/hyphy-2.5.69\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+ cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/hyphy-2.5.69\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.69+dfsg -B/build/reproducible-path/hyphy-2.5.69+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
@@ -1398,487 +1434,487 @@
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params.
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params.
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/categoryEcho.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolClockAllRoots.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NucModelCompare.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/WANC.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGIvL.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestBranchDNDS.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NielsenYang.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/simpleBootstrap.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonModelCompare.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_MFReader_.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-joint-fitter.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolecularClock.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SandNSAmbigs.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/FitnessAAModels.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/selectModelParameters.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ModelTest.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DirectionalREL.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BGM.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/UpperBound.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/chooseDistanceFormula.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/files.lst
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_tipDater.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SandNSAmbigs.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relratioBootstrap.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/queryTree.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BGM.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolecularClock.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NucModelCompare.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_MFReader_.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/posteriors.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/readIndexFile.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteREL.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanGaps.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/bayesgraph.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/binomial.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relrateBootstrap.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/NJ.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanStopCodons.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonModelCompare.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/bayesgraph.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LHT.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearch.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LZ_Complexity.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_CMS_Aux.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/WANC.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper4.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PartitionDataFile.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignShared.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/files.lst
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/posteriors.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestClade.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanGaps.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MGvsGY.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/last.date
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGASimProcessor.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/IOFunctions.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/UtilityFunctions.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/IOFunctions.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MSS.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_GTR.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MSS.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/charbinary.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/REV.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrix2dict_aux.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JTT.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/gcpREV.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/LG.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/WAG.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JC69.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/mt.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/HIV.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/empirical.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/parameters.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR-MutSel.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/parameters.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/function-loader.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/HIV.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/mt.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/WAG.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/LG.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/gcpREV.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JTT.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JC69.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/REV.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrix2dict_aux.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/empirical.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/random.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/math.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/matrix.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/math.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/regexp.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/distances.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mapping.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/stats.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/function-loader.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/all-terms.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSites.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/stats.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGASimProcessor.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_tipDater.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/globalChecker.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LocalMolClock.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestClade.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearch.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/categoryEcho.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestBranchDNDS.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/sir.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/sir.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignShared.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LEISR.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestCladeMeans.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/error-filter.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MGvsGY.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper4.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Gateaux.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/last.date
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteREL.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relratioBootstrap.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestCladeMeans.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/chooseDistanceFormula.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/branchSwappingFunctions.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doSPRSwap.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/binomial.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NeighborJoining.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN84
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_MH
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93_RV
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools2.def
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_RV
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/JC69
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_codon
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/T3P
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93_RV
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_binary
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_MH
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_codon
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/JC69
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools2.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN84
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_RV
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSites.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PartitionDataFile.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/KHTest.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_CMS_Aux.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector-2.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolClockAllRoots.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relrateBootstrap.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/queryTree.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LEISR.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/simpleBootstrap.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/globalChecker.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ModelTest.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/KHTest.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/NJ.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/branchSwappingFunctions.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NielsenYang.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/selectModelParameters.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-joint-fitter.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DirectionalREL.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/FitnessAAModels.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/UpperBound.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GateauxMR.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGIvL.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/readIndexFile.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/error-filter.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/molclockBootstrap.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doSPRSwap.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector-2.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GateauxMR.bf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params.
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params.
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated
--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P
+-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/bin/hyphy
-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/bin/HYPHYMPI
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/bin/HYPHYMPI" to ""
@@ -1943,8 +1979,8 @@
dh_md5sums -O--buildsystem=cmake
dh_builddeb -O--buildsystem=cmake
dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.69+dfsg-1_armhf.deb'.
-dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.5.69+dfsg-1_armhf.deb'.
dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.5.69+dfsg-1_all.deb'.
+dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.5.69+dfsg-1_armhf.deb'.
dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.5.69+dfsg-1_armhf.deb'.
dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.5.69+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=binary -O../hyphy_2.5.69+dfsg-1_armhf.buildinfo
@@ -1954,12 +1990,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/4232/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/4232/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/29960 and its subdirectories
-I: Current time: Wed Mar 5 21:59:57 -12 2025
-I: pbuilder-time-stamp: 1741255197
+I: removing directory /srv/workspace/pbuilder/4232 and its subdirectories
+I: Current time: Fri Mar 7 00:04:21 +14 2025
+I: pbuilder-time-stamp: 1741255461