Diff of the two buildlogs: -- --- b1/build.log 2024-11-12 06:46:53.814540302 +0000 +++ b2/build.log 2024-11-12 06:53:23.628645021 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Nov 11 18:09:39 -12 2024 -I: pbuilder-time-stamp: 1731391779 +I: Current time: Tue Nov 12 20:47:14 +14 2024 +I: pbuilder-time-stamp: 1731394034 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying trim-file-prefix.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/6876/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/720/tmp/hooks/D01_modify_environment starting +debug: Running on virt64b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 12 06:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/720/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/720/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='28c60be345044ee4bff1414e5066cc53' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='6876' - PS1='# ' - PS2='> ' + INVOCATION_ID=7b2d9dff87594ec29bd7cba8e1cb3955 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=720 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LvmxdCZq/pbuilderrc_67yu --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LvmxdCZq/b1 --logfile b1/build.log htslib_1.20+ds-2.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LvmxdCZq/pbuilderrc_TkoM --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LvmxdCZq/b2 --logfile b2/build.log htslib_1.20+ds-2.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux wbq0 6.1.0-27-armmp #1 SMP Debian 6.1.115-1 (2024-11-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/6876/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/720/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -216,7 +248,7 @@ Get: 85 http://deb.debian.org/debian unstable/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libhtscodecs-dev armhf 1.6.1-1 [2964 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.6.3-1+b1 [304 kB] -Fetched 36.0 MB in 7s (5385 kB/s) +Fetched 36.0 MB in 1s (46.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19689 files and directories currently installed.) @@ -579,7 +611,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/htslib-1.20+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htslib_1.20+ds-2_source.changes +I: user script /srv/workspace/pbuilder/720/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/720/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/htslib-1.20+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../htslib_1.20+ds-2_source.changes dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.20+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -592,7 +628,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/htslib-1.20+ds' dh_auto_clean - make -j3 distclean + make -j4 distclean make[2]: Entering directory '/build/reproducible-path/htslib-1.20+ds' rm -f test/*.tmp test/*.tmp.* test/faidx/*.tmp* test/faidx/FAIL* \ test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* \ @@ -732,7 +768,7 @@ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.20" \ libdir=/usr/lib/arm-linux-gnueabihf - make -j3 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/arm-linux-gnueabihf + make -j4 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/arm-linux-gnueabihf make[2]: Entering directory '/build/reproducible-path/htslib-1.20+ds' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c @@ -857,9 +893,9 @@ sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread -ln -sf libhts.so libhts.so.3 gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm +ln -sf libhts.so libhts.so.3 gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_time_funcs test/test_time_funcs.o gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread @@ -908,7 +944,7 @@ if find . -name "FAIL*" > /dev/null ; then \ for file in $(find . -name "FAIL*"); do echo ${file}; cat ${file}; done && false ; \ fi - make -j3 test "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/arm-linux-gnueabihf + make -j4 test "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/arm-linux-gnueabihf make[2]: Entering directory '/build/reproducible-path/htslib-1.20+ds' test/hts_endian test/test_expr @@ -1156,203 +1192,203 @@ bgzip --output 4 threads: .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 14 -x /tmp/CTNwOO3HpI/index.bam.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/CTNwOO3HpI/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 14 -x /tmp/1IAi_rUFv0/index.bam.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/1IAi_rUFv0/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/CTNwOO3HpI/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/1IAi_rUFv0/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 0 -x /tmp/CTNwOO3HpI/index.bam.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/CTNwOO3HpI/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 0 -x /tmp/1IAi_rUFv0/index.bam.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/1IAi_rUFv0/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/CTNwOO3HpI/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/1IAi_rUFv0/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/CTNwOO3HpI/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/1IAi_rUFv0/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/CTNwOO3HpI/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/1IAi_rUFv0/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/CTNwOO3HpI/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/1IAi_rUFv0/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/CTNwOO3HpI/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/1IAi_rUFv0/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -C -x /tmp/CTNwOO3HpI/index.cram.crai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/CTNwOO3HpI/index.cram + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -C -x /tmp/1IAi_rUFv0/index.cram.crai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/1IAi_rUFv0/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index /tmp/CTNwOO3HpI/index.cram + /build/reproducible-path/htslib-1.20+ds/test/test_index /tmp/1IAi_rUFv0/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 14 -x /tmp/CTNwOO3HpI/index.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/CTNwOO3HpI/index.bcf + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 14 -x /tmp/1IAi_rUFv0/index.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/1IAi_rUFv0/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/CTNwOO3HpI/index.bcf + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/1IAi_rUFv0/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/CTNwOO3HpI/index.vcf.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/CTNwOO3HpI/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/1IAi_rUFv0/index.vcf.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/1IAi_rUFv0/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/CTNwOO3HpI/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/1IAi_rUFv0/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/CTNwOO3HpI/index.vcf.gz.tbi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/CTNwOO3HpI/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/1IAi_rUFv0/index.vcf.gz.tbi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/1IAi_rUFv0/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -t /tmp/CTNwOO3HpI/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -t /tmp/1IAi_rUFv0/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/tabix /tmp/CTNwOO3HpI/index.vcf.gz##idx##/tmp/CTNwOO3HpI/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.20+ds/tabix /tmp/1IAi_rUFv0/index.vcf.gz##idx##/tmp/1IAi_rUFv0/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/CTNwOO3HpI/index2.bam 1:1000000-1000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/1IAi_rUFv0/index2.bam 1:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/CTNwOO3HpI/index2.bam 1:2000000-2000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/1IAi_rUFv0/index2.bam 1:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/CTNwOO3HpI/index2.bam 2:1000000-1000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/1IAi_rUFv0/index2.bam 2:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/CTNwOO3HpI/index2.bam 2:2000000-2000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/1IAi_rUFv0/index2.bam 2:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/CTNwOO3HpI/index.bam.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/CTNwOO3HpI/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/1IAi_rUFv0/index.bam.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/1IAi_rUFv0/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/CTNwOO3HpI/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/1IAi_rUFv0/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 0 -x /tmp/CTNwOO3HpI/index.bam.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/CTNwOO3HpI/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 0 -x /tmp/1IAi_rUFv0/index.bam.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/1IAi_rUFv0/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/CTNwOO3HpI/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/1IAi_rUFv0/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/CTNwOO3HpI/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/1IAi_rUFv0/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/CTNwOO3HpI/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/1IAi_rUFv0/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/CTNwOO3HpI/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/1IAi_rUFv0/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/CTNwOO3HpI/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/1IAi_rUFv0/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/CTNwOO3HpI/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/1IAi_rUFv0/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -C -x /tmp/CTNwOO3HpI/index.cram.crai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/CTNwOO3HpI/index.cram + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -C -x /tmp/1IAi_rUFv0/index.cram.crai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/1IAi_rUFv0/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index /tmp/CTNwOO3HpI/index.cram + /build/reproducible-path/htslib-1.20+ds/test/test_index /tmp/1IAi_rUFv0/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/CTNwOO3HpI/index.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/CTNwOO3HpI/index.bcf + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/1IAi_rUFv0/index.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/1IAi_rUFv0/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/CTNwOO3HpI/index.bcf + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/1IAi_rUFv0/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/CTNwOO3HpI/index.vcf.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/CTNwOO3HpI/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/1IAi_rUFv0/index.vcf.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/1IAi_rUFv0/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/CTNwOO3HpI/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/1IAi_rUFv0/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/CTNwOO3HpI/index.vcf.gz.tbi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/CTNwOO3HpI/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/1IAi_rUFv0/index.vcf.gz.tbi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/1IAi_rUFv0/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -t /tmp/CTNwOO3HpI/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -t /tmp/1IAi_rUFv0/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/tabix /tmp/CTNwOO3HpI/index.vcf.gz##idx##/tmp/CTNwOO3HpI/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.20+ds/tabix /tmp/1IAi_rUFv0/index.vcf.gz##idx##/tmp/1IAi_rUFv0/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/CTNwOO3HpI/index2.bam 1:1000000-1000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/1IAi_rUFv0/index2.bam 1:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/CTNwOO3HpI/index2.bam 1:2000000-2000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/1IAi_rUFv0/index2.bam 1:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/CTNwOO3HpI/index2.bam 2:1000000-1000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/1IAi_rUFv0/index2.bam 2:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/CTNwOO3HpI/index2.bam 2:2000000-2000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/1IAi_rUFv0/index2.bam 2:2000000-2000000 .. ok test_view testing multi-ref CRAM modes: @@ -2521,7 +2557,7 @@ .. ok test_vcf_api: - /build/reproducible-path/htslib-1.20+ds/test/test-vcf-api /tmp/CTNwOO3HpI/test-vcf-api.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-vcf-api /tmp/1IAi_rUFv0/test-vcf-api.bcf .. ok test_bcf2vcf: @@ -2529,7 +2565,7 @@ .. ok test_vcf_sweep: - /build/reproducible-path/htslib-1.20+ds/test/test-vcf-sweep /tmp/CTNwOO3HpI/test-vcf-api.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-vcf-sweep /tmp/1IAi_rUFv0/test-vcf-api.bcf .. ok test_vcf_various: @@ -2557,169 +2593,169 @@ .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/CTNwOO3HpI -s 74452500 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/1IAi_rUFv0 -s 74452500 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/CTNwOO3HpI -s 34270147 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/1IAi_rUFv0 -s 34270147 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/CTNwOO3HpI -s 11108528 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/1IAi_rUFv0 -s 11108528 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/CTNwOO3HpI -s 42233895 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/1IAi_rUFv0 -s 42233895 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/CTNwOO3HpI -s 8111117 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/1IAi_rUFv0 -s 8111117 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/CTNwOO3HpI -s 85644070 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/1IAi_rUFv0 -s 85644070 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/CTNwOO3HpI -s 49879942 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/1IAi_rUFv0 -s 49879942 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/CTNwOO3HpI -s 47881429 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/1IAi_rUFv0 -s 47881429 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/CTNwOO3HpI -s 69081244 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/1IAi_rUFv0 -s 69081244 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/CTNwOO3HpI -s 83459376 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/1IAi_rUFv0 -s 83459376 .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.b.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.c.vcf 2> /tmp/CTNwOO3HpI/no_index_1.err + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.b.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.c.vcf 2> /tmp/1IAi_rUFv0/no_index_1.err .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.hdr_order.vcf > /tmp/CTNwOO3HpI/no_index_2.out 2> /tmp/CTNwOO3HpI/no_index_2.err (expected fail) + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.hdr_order.vcf > /tmp/1IAi_rUFv0/no_index_2.out 2> /tmp/1IAi_rUFv0/no_index_2.err (expected fail) .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.rec_order.vcf > /tmp/CTNwOO3HpI/no_index_3.out 2> /tmp/CTNwOO3HpI/no_index_3.err (expected fail) + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.rec_order.vcf > /tmp/1IAi_rUFv0/no_index_3.out 2> /tmp/1IAi_rUFv0/no_index_3.err (expected fail) .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.rec_order.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf > /tmp/CTNwOO3HpI/no_index_4.out 2> /tmp/CTNwOO3HpI/no_index_4.err (expected fail) + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.rec_order.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf > /tmp/1IAi_rUFv0/no_index_4.out 2> /tmp/1IAi_rUFv0/no_index_4.err (expected fail) .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test_view -b -p /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf -x /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/weird-chr-names.vcf + /build/reproducible-path/htslib-1.20+ds/test/test_view -b -p /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf -x /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/weird-chr-names.vcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_1.out.vcf -r '1' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_1.out.vcf -r '1' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_2.out.vcf -r '1:1-2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_2.out.vcf -r '1:1-2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_3.out.vcf -r '1:1,1:2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_3.out.vcf -r '1:1,1:2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_4.out.vcf -r '1:1-1' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_4.out.vcf -r '1:1-1' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_5.out.vcf -r '{1:1}' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_5.out.vcf -r '{1:1}' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_6.out.vcf -r '{1:1}:1-2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_6.out.vcf -r '{1:1}:1-2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_7.out.vcf -r '{1:1}:1,{1:1}:2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_7.out.vcf -r '{1:1}:1,{1:1}:2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_8.out.vcf -r '{1:1}:1-1' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_8.out.vcf -r '{1:1}:1-1' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_9.out.vcf -r '{1:1-1}' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_9.out.vcf -r '{1:1-1}' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_10.out.vcf -r '{1:1-1}:1-2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_10.out.vcf -r '{1:1-1}:1-2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_11.out.vcf -r '{1:1-1}:1,{1:1-1}:2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_11.out.vcf -r '{1:1-1}:1,{1:1-1}:2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_12.out.vcf -r '{1:1-1}:1-1' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_12.out.vcf -r '{1:1-1}:1-1' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_13.out.vcf -r '{1:1-1}-2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf (expected fail) + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_13.out.vcf -r '{1:1-1}-2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf (expected fail) [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2 Failed to set regions .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_14.out.vcf -t '1' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_14.out.vcf -t '1' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_15.out.vcf -t '1:1-2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_15.out.vcf -t '1:1-2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_16.out.vcf -t '1:1,1:2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_16.out.vcf -t '1:1,1:2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_17.out.vcf -t '1:1-1' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_17.out.vcf -t '1:1-1' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_18.out.vcf -t '{1:1}' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_18.out.vcf -t '{1:1}' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_19.out.vcf -t '{1:1}:1-2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_19.out.vcf -t '{1:1}:1-2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_20.out.vcf -t '{1:1}:1,{1:1}:2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_20.out.vcf -t '{1:1}:1,{1:1}:2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_21.out.vcf -t '{1:1}:1-1' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_21.out.vcf -t '{1:1}:1-1' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_22.out.vcf -t '{1:1-1}' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_22.out.vcf -t '{1:1-1}' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_23.out.vcf -t '{1:1-1}:1-2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_23.out.vcf -t '{1:1-1}:1-2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_24.out.vcf -t '{1:1-1}:1,{1:1-1}:2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_24.out.vcf -t '{1:1-1}:1,{1:1-1}:2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_25.out.vcf -t '{1:1-1}:1-1' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_25.out.vcf -t '{1:1-1}:1-1' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/CTNwOO3HpI/range_test_26.out.vcf -t '{1:1-1}-2' --args /tmp/CTNwOO3HpI/weird-chr-names.vcf.bcf (expected fail) + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/1IAi_rUFv0/range_test_26.out.vcf -t '{1:1-1}-2' --args /tmp/1IAi_rUFv0/weird-chr-names.vcf.bcf (expected fail) [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2 Failed to set targets .. ok @@ -2729,15 +2765,15 @@ .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/CTNwOO3HpI/headernul0.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/1IAi_rUFv0/headernul0.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/CTNwOO3HpI/headernul1.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/1IAi_rUFv0/headernul1.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/CTNwOO3HpI/headernul678.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/1IAi_rUFv0/headernul678.bam .. ok test_rebgzip: Alternate zlib/deflate library detected @@ -3116,7 +3152,7 @@ failed .. 0 make[2]: Leaving directory '/build/reproducible-path/htslib-1.20+ds' - rm -fr -- /tmp/dh-xdg-rundir-N6ae02iv + rm -fr -- /tmp/dh-xdg-rundir-UcXt4Jdg make[1]: Leaving directory '/build/reproducible-path/htslib-1.20+ds' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_test-indep @@ -3139,14 +3175,14 @@ PACKAGE_VERSION="1.20" \ libdir=/usr/lib/arm-linux-gnueabihf install -m0755 -d /build/reproducible-path/htslib-1.20\+ds/debian/tmp - make -j3 install DESTDIR=/build/reproducible-path/htslib-1.20\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/arm-linux-gnueabihf + make -j4 install DESTDIR=/build/reproducible-path/htslib-1.20\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/arm-linux-gnueabihf make[2]: Entering directory '/build/reproducible-path/htslib-1.20+ds' mkdir -p -m 755 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/bin /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/include /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/include/htslib /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/arm-linux-gnueabihf /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/share/man/man1 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/share/man/man5 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/share/man/man7 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig if test -n "/usr/lib/arm-linux-gnueabihf/htslib"; then mkdir -p -m 755 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/htslib; fi install -p -m 644 libhts.so /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so.1.20 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/arm-linux-gnueabihf#g;s#@-PACKAGE_VERSION@#1.20#g' htslib.pc.tmp > /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc -chmod 644 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc ln -sf libhts.so.1.20 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so +chmod 644 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc ln -sf libhts.so.1.20 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so.3 install -p annot-tsv bgzip htsfile tabix /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/arm-linux-gnueabihf/htslib; fi @@ -3217,18 +3253,18 @@ debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/htslib-1.20+ds' dh_installchangelogs NEWS - install -m0755 -d debian/htslib-test/usr/share/doc/htslib-test - install -p -m0644 debian/.debhelper/generated/htslib-test/dh_installchangelogs.dch.trimmed debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian - install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog + install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev + install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian + install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/.debhelper/generated/tabix/dh_installchangelogs.dch.trimmed debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 install -p -m0644 debian/.debhelper/generated/libhts3t64/dh_installchangelogs.dch.trimmed debian/libhts3t64/usr/share/doc/libhts3t64/changelog.Debian install -p -m0644 NEWS debian/libhts3t64/usr/share/doc/libhts3t64/changelog - install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev - install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian - install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog + install -m0755 -d debian/htslib-test/usr/share/doc/htslib-test + install -p -m0644 debian/.debhelper/generated/htslib-test/dh_installchangelogs.dch.trimmed debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian + install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog make[1]: Leaving directory '/build/reproducible-path/htslib-1.20+ds' dh_installman install -m0755 -d debian/libhts3t64/usr/share/man/man7/ @@ -3239,19 +3275,21 @@ install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 + man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 debian/libhts3t64/usr/share/man/man5/vcf.5 - man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 - mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 - chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 mv debian/libhts3t64/usr/share/man/man5/faidx.5.dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 mv debian/libhts3t64/usr/share/man/man5/sam.5.dh-new debian/libhts3t64/usr/share/man/man5/sam.5 - mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 - chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 debian/libhts3t64/usr/share/man/man5/vcf.5 - mv debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 + chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 - chmod 0644 -- debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 + chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 + mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 + chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 + mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 + mv debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 + chmod 0644 -- debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 dh_lintian install -m0755 -d debian/libhts3t64/usr/share/lintian/overrides install -p -m0644 debian/libhts3t64.lintian-overrides debian/libhts3t64/usr/share/lintian/overrides/libhts3t64 @@ -3271,48 +3309,48 @@ ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism dh_compress - cd debian/htslib-test cd debian/libhts3t64 + cd debian/libhts-dev + cd debian/htslib-test + cd debian/tabix + chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 chmod a-x usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 + gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 + chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 + gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian - gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian cd '/build/reproducible-path/htslib-1.20+ds' + gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian cd '/build/reproducible-path/htslib-1.20+ds' - cd debian/tabix - cd debian/libhts-dev - chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian - chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 - gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 - gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/build/reproducible-path/htslib-1.20+ds' cd '/build/reproducible-path/htslib-1.20+ds' rm -f debian/htslib-test.debhelper.log debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/htslib-1.20+ds' dh_fixperms - find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libhts3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libhts3t64/usr/share/man debian/libhts3t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libhts3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libhts3t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts3t64/usr/share/man debian/libhts3t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/htslib-1.20+ds' @@ -3339,38 +3377,38 @@ make[1]: Entering directory '/build/reproducible-path/htslib-1.20+ds' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83 + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83/d5ce0976df0ffdfd43f731fa09a58186f8f180.debug install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/54 objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/arm-linux-gnueabihf/libhts.so.1.20 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/54/fe25f1286aa710d07d32e05d10d95a29580d5d.debug - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/73 - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/73/e5b453580cf390b8e5c06f4bd632b18649f4e0.debug - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/73/e5b453580cf390b8e5c06f4bd632b18649f4e0.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/73/e5b453580cf390b8e5c06f4bd632b18649f4e0.debug debian/tabix/usr/bin/bgzip - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2e - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2e/3debbf45e69e0825f31150d3066da53bbee3e7.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/54/fe25f1286aa710d07d32e05d10d95a29580d5d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/arm-linux-gnueabihf/libhts.so.1.20 objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/54/fe25f1286aa710d07d32e05d10d95a29580d5d.debug debian/libhts3t64/usr/lib/arm-linux-gnueabihf/libhts.so.1.20 - install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/de - objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/de/c6c093e438f1bfb990b885352a834a04197013.debug - chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/de/c6c093e438f1bfb990b885352a834a04197013.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so - objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/de/c6c093e438f1bfb990b885352a834a04197013.debug debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83/d5ce0976df0ffdfd43f731fa09a58186f8f180.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83/d5ce0976df0ffdfd43f731fa09a58186f8f180.debug debian/tabix/usr/bin/htsfile install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/72/e10a900153c12d006ba64011e036fdbf6b5c54.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/72/e10a900153c12d006ba64011e036fdbf6b5c54.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/72/e10a900153c12d006ba64011e036fdbf6b5c54.debug debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so - install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9f - objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9f/38ecf083fbcc0fa0e0f6be51b9281e98d11d38.debug - chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9f/38ecf083fbcc0fa0e0f6be51b9281e98d11d38.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so - objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9f/38ecf083fbcc0fa0e0f6be51b9281e98d11d38.debug debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2e + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2e/3debbf45e69e0825f31150d3066da53bbee3e7.debug install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1e/70d1aee358169ae8b374f6f1eb23d1039d9199.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1e/70d1aee358169ae8b374f6f1eb23d1039d9199.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1e/70d1aee358169ae8b374f6f1eb23d1039d9199.debug debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so + install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/de + objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/de/c6c093e438f1bfb990b885352a834a04197013.debug + chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/de/c6c093e438f1bfb990b885352a834a04197013.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so + objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/de/c6c093e438f1bfb990b885352a834a04197013.debug debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so + install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9f + objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9f/38ecf083fbcc0fa0e0f6be51b9281e98d11d38.debug + chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9f/38ecf083fbcc0fa0e0f6be51b9281e98d11d38.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so + objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9f/38ecf083fbcc0fa0e0f6be51b9281e98d11d38.debug debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3t64/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3t64/usr/lib/debug/.dwz @@ -3381,11 +3419,11 @@ chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2e/3debbf45e69e0825f31150d3066da53bbee3e7.debug strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2e/3debbf45e69e0825f31150d3066da53bbee3e7.debug debian/tabix/usr/bin/tabix - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83 - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83/d5ce0976df0ffdfd43f731fa09a58186f8f180.debug - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83/d5ce0976df0ffdfd43f731fa09a58186f8f180.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83/d5ce0976df0ffdfd43f731fa09a58186f8f180.debug debian/tabix/usr/bin/htsfile + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/73 + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/73/e5b453580cf390b8e5c06f4bd632b18649f4e0.debug + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/73/e5b453580cf390b8e5c06f4bd632b18649f4e0.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/73/e5b453580cf390b8e5c06f4bd632b18649f4e0.debug debian/tabix/usr/bin/bgzip install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz @@ -3406,9 +3444,9 @@ rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/tabix/DEBIAN - dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile + dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix debian/tabix/usr/bin/bgzip install -m0755 -d debian/libhts3t64/DEBIAN - dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/arm-linux-gnueabihf/libhts.so.1.20 debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so + dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/arm-linux-gnueabihf/libhts.so.1.20 debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect @@ -3424,58 +3462,58 @@ install -m0755 -d debian/htslib-test/DEBIAN install -m0755 -d debian/tabix/DEBIAN dh_gencontrol - install -m0755 -d debian/htslib-test/DEBIAN - echo misc:Depends= >> debian/htslib-test.substvars - echo misc:Pre-Depends= >> debian/htslib-test.substvars - dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -cdebian/control -Pdebian/htslib-test install -m0755 -d debian/libhts3t64/DEBIAN echo misc:Depends= >> debian/libhts3t64.substvars echo misc:Pre-Depends= >> debian/libhts3t64.substvars install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/.debhelper/libhts3t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libhts3t64-dbgsym "-DDepends=libhts3t64 (= \${binary:Version})" "-DDescription=debug symbols for libhts3t64" "-DBuild-Ids=1e70d1aee358169ae8b374f6f1eb23d1039d9199 54fe25f1286aa710d07d32e05d10d95a29580d5d 72e10a900153c12d006ba64011e036fdbf6b5c54 9f38ecf083fbcc0fa0e0f6be51b9281e98d11d38 dec6c093e438f1bfb990b885352a834a04197013" -DSection=debug -UReplaces -UBreaks - chmod 0644 -- debian/htslib-test/DEBIAN/control install -m0755 -d debian/tabix/DEBIAN echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=2e3debbf45e69e0825f31150d3066da53bbee3e7 73e5b453580cf390b8e5c06f4bd632b18649f4e0 83d5ce0976df0ffdfd43f731fa09a58186f8f180" -DSection=debug -UMulti-Arch -UReplaces -UBreaks + install -m0755 -d debian/htslib-test/DEBIAN + echo misc:Depends= >> debian/htslib-test.substvars + echo misc:Pre-Depends= >> debian/htslib-test.substvars + dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -cdebian/control -Pdebian/htslib-test + install -m0755 -d debian/libhts-dev/DEBIAN + echo misc:Depends= >> debian/libhts-dev.substvars + echo misc:Pre-Depends= >> debian/libhts-dev.substvars + dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -cdebian/control -Pdebian/libhts-dev + chmod 0644 -- debian/libhts-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/libhts3t64 chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/tabix + chmod 0644 -- debian/htslib-test/DEBIAN/control chmod 0644 -- debian/libhts3t64/DEBIAN/control - install -m0755 -d debian/libhts-dev/DEBIAN - echo misc:Depends= >> debian/libhts-dev.substvars - echo misc:Pre-Depends= >> debian/libhts-dev.substvars - dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -cdebian/control -Pdebian/libhts-dev chmod 0644 -- debian/tabix/DEBIAN/control - chmod 0644 -- debian/libhts-dev/DEBIAN/control dh_md5sums - install -m0755 -d debian/htslib-test/DEBIAN - cd debian/htslib-test >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + install -m0755 -d debian/tabix/DEBIAN + install -m0755 -d debian/libhts-dev/DEBIAN + cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libhts3t64/DEBIAN cd debian/libhts3t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums + install -m0755 -d debian/htslib-test/DEBIAN + cd debian/htslib-test >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN - cd debian/.debhelper/libhts3t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/htslib-test/DEBIAN/md5sums - install -m0755 -d debian/tabix/DEBIAN - cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/md5sums - install -m0755 -d debian/libhts-dev/DEBIAN - cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN + cd debian/.debhelper/libhts3t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/md5sums + chmod 0644 -- debian/htslib-test/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums - chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb --root-owner-group --build debian/libhts3t64 .. + dpkg-deb --root-owner-group --build debian/libhts-dev .. +dpkg-deb: building package 'libhts3t64' in '../libhts3t64_1.20+ds-2_armhf.deb'. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.20+ds-2_armhf.deb'. dpkg-deb: building package 'tabix' in '../tabix_1.20+ds-2_armhf.deb'. -dpkg-deb: building package 'libhts3t64' in '../libhts3t64_1.20+ds-2_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libhts3t64/dbgsym-root .. dpkg-deb: building package 'libhts3t64-dbgsym' in '../libhts3t64-dbgsym_1.20+ds-2_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. @@ -3490,12 +3528,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/720/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/720/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/6876 and its subdirectories -I: Current time: Mon Nov 11 18:46:48 -12 2024 -I: pbuilder-time-stamp: 1731394008 +I: removing directory /srv/workspace/pbuilder/720 and its subdirectories +I: Current time: Tue Nov 12 20:53:18 +14 2024 +I: pbuilder-time-stamp: 1731394398