Diff of the two buildlogs:
--
--- b1/build.log 2025-02-03 13:07:41.982536439 +0000
+++ b2/build.log 2025-02-03 13:22:14.715204638 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Mon Feb 3 00:59:56 -12 2025
-I: pbuilder-time-stamp: 1738587596
+I: Current time: Tue Feb 4 03:07:55 +14 2025
+I: pbuilder-time-stamp: 1738588075
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
@@ -26,52 +26,84 @@
dpkg-source: info: applying rename_bseq1_t.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/10274/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/8268/tmp/hooks/D01_modify_environment starting
+debug: Running on cbxi4a.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Feb 3 13:08 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/8268/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/8268/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='armhf'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
- DISTRIBUTION='unstable'
- HOME='/root'
- HOST_ARCH='armhf'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=armhf
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
+ DIRSTACK=()
+ DISTRIBUTION=unstable
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=arm
+ HOST_ARCH=armhf
IFS='
'
- INVOCATION_ID='667520928c9048beb0d4aee8984e8a8b'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='10274'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=6522302af9af48a1935c9a35e91a7b46
+ LANG=C
+ LANGUAGE=it_CH:it
+ LC_ALL=C
+ MACHTYPE=arm-unknown-linux-gnueabihf
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnueabihf
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=8268
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nIk9hbC8/pbuilderrc_VpVb --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nIk9hbC8/b1 --logfile b1/build.log gatk-fermilite_1.2.1+dfsg-2.dsc'
- SUDO_GID='113'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://10.0.0.15:3142/'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nIk9hbC8/pbuilderrc_LCmN --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nIk9hbC8/b2 --logfile b2/build.log gatk-fermilite_1.2.1+dfsg-2.dsc'
+ SUDO_GID=113
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://10.0.0.15:3142/
I: uname -a
- Linux virt64b 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-23-armmp #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/10274/tmp/hooks/D02_print_environment finished
+I: user script /srv/workspace/pbuilder/8268/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -286,7 +318,7 @@
Get: 167 http://deb.debian.org/debian unstable/main armhf libfml0 armhf 0.1+git20221215.85f159e-1 [70.5 kB]
Get: 168 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB]
Get: 169 http://deb.debian.org/debian unstable/main armhf libfml-dev armhf 0.1+git20221215.85f159e-1 [82.1 kB]
-Fetched 223 MB in 8s (27.4 MB/s)
+Fetched 223 MB in 25s (8865 kB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19565 files and directories currently installed.)
@@ -1178,7 +1210,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes
+I: user script /srv/workspace/pbuilder/8268/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/8268/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes
dpkg-buildpackage: info: source package gatk-fermilite
dpkg-buildpackage: info: source version 1.2.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
@@ -1224,7 +1260,7 @@
dh_auto_build
mkdir -p .gradle/init.d
cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/
- gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=3 jar
+ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=4 jar
openjdk version "21.0.6" 2025-01-21
OpenJDK Runtime Environment (build 21.0.6+7-Debian-1)
OpenJDK Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing)
@@ -1232,18 +1268,18 @@
To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html.
Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1
Successfully started process 'Gradle build daemon'
-An attempt to start the daemon took 6.318 secs.
-The client will now receive all logging from the daemon (pid: 24302). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-24302.out.log
+An attempt to start the daemon took 20.341 secs.
+The client will now receive all logging from the daemon (pid: 14369). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-14369.out.log
Daemon will be stopped at the end of the build stopping after processing
Closing daemon's stdin at end of input.
The daemon will no longer process any standard input.
-Using 3 worker leases.
-Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@16437d
-Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@16437d
-Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2ded5e
+Using 4 worker leases.
+Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d4d421
+Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d4d421
+Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@75090f
Starting Build
Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer.
-Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d58ed6
+Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@eb16ef
Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer.
Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using SubsetScriptTransformer.
Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using BuildScriptTransformer.
@@ -1260,23 +1296,23 @@
Linking the generated javadoc to the system JDK API documentation
All projects evaluated.
Selected primary task 'jar' from project :
-Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@11a3b38
+Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@168bc4a
Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar']
-Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2ded5e
-Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@de3d18
-Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@70fe37
-:compileJava (Thread[#29,Daemon worker,5,main]) started.
+Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@75090f
+Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@272824
+Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@598554
+:compileJava (Thread[#41,Task worker for ':',5,main]) started.
:compileJava
-Putting task artifact state for task ':compileJava' into context took 0.029 secs.
-Up-to-date check for task ':compileJava' took 0.091 secs. It is not up-to-date because:
+Putting task artifact state for task ':compileJava' into context took 0.146 secs.
+Up-to-date check for task ':compileJava' took 0.44 secs. It is not up-to-date because:
No history is available.
All input files are considered out-of-date for incremental task ':compileJava'.
Compiling with JDK Java compiler API.
-:compileJava (Thread[#29,Daemon worker,5,main]) completed. Took 3.925 secs.
-:buildFermiLib (Thread[#29,Daemon worker,5,main]) started.
+:compileJava (Thread[#41,Task worker for ':',5,main]) completed. Took 23.429 secs.
+:buildFermiLib (Thread[#41,Task worker for ':',5,main]) started.
:buildFermiLib
Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs.
-Up-to-date check for task ':buildFermiLib' took 0.006 secs. It is not up-to-date because:
+Up-to-date check for task ':buildFermiLib' took 0.055 secs. It is not up-to-date because:
No history is available.
using /usr/lib/jvm/java-21-openjdk-armhf -> /usr/lib/jvm/java-21-openjdk-armhf as JAVA_HOME
Starting process 'command 'make''. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c Command: make
@@ -1285,33 +1321,33 @@
gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-21-openjdk-armhf/include -I/usr/lib/jvm/java-21-openjdk-armhf/include/linux -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c
gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/arm-linux-gnueabihf/libfml.so -lm -lz -lpthread
make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c'
-:buildFermiLib (Thread[#29,Daemon worker,5,main]) completed. Took 0.792 secs.
-:processResources (Thread[#29,Daemon worker,5,main]) started.
+:buildFermiLib (Thread[#41,Task worker for ':',5,main]) completed. Took 3.365 secs.
+:processResources (Thread[#41,Task worker for ':',5,main]) started.
:processResources
Putting task artifact state for task ':processResources' into context took 0.0 secs.
file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found
Skipping task ':processResources' as it has no source files and no previous output files.
:processResources NO-SOURCE
-:processResources (Thread[#29,Daemon worker,5,main]) completed. Took 0.022 secs.
-:classes (Thread[#42,Task worker for ':' Thread 2,5,main]) started.
+:processResources (Thread[#41,Task worker for ':',5,main]) completed. Took 0.053 secs.
+:classes (Thread[#41,Task worker for ':',5,main]) started.
:classes
Skipping task ':classes' as it has no actions.
-:classes (Thread[#42,Task worker for ':' Thread 2,5,main]) completed. Took 0.002 secs.
-:debianMavenPom (Thread[#42,Task worker for ':' Thread 2,5,main]) started.
+:classes (Thread[#41,Task worker for ':',5,main]) completed. Took 0.027 secs.
+:debianMavenPom (Thread[#41,Task worker for ':',5,main]) started.
:debianMavenPom
Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs.
-Up-to-date check for task ':debianMavenPom' took 0.003 secs. It is not up-to-date because:
+Up-to-date check for task ':debianMavenPom' took 0.022 secs. It is not up-to-date because:
No history is available.
Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom
-:debianMavenPom (Thread[#42,Task worker for ':' Thread 2,5,main]) completed. Took 0.462 secs.
-:jar (Thread[#42,Task worker for ':' Thread 2,5,main]) started.
+:debianMavenPom (Thread[#41,Task worker for ':',5,main]) completed. Took 1.809 secs.
+:jar (Thread[#41,Task worker for ':',5,main]) started.
:jar
Putting task artifact state for task ':jar' into context took 0.0 secs.
-Up-to-date check for task ':jar' took 0.014 secs. It is not up-to-date because:
+Up-to-date check for task ':jar' took 0.099 secs. It is not up-to-date because:
No history is available.
-:jar (Thread[#42,Task worker for ':' Thread 2,5,main]) completed. Took 0.209 secs.
+:jar (Thread[#41,Task worker for ':',5,main]) completed. Took 0.649 secs.
-BUILD SUCCESSFUL in 42s
+BUILD SUCCESSFUL in 2m 22s
4 actionable tasks: 4 executed
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg'
@@ -1319,7 +1355,7 @@
LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(readlink -f src/main/c)" dh_auto_test
mkdir -p .gradle/init.d
cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/
- gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=3 test
+ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=4 test
openjdk version "21.0.6" 2025-01-21
OpenJDK Runtime Environment (build 21.0.6+7-Debian-1)
OpenJDK Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing)
@@ -1327,17 +1363,17 @@
To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html.
Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1
Successfully started process 'Gradle build daemon'
-An attempt to start the daemon took 4.172 secs.
-The client will now receive all logging from the daemon (pid: 26106). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-26106.out.log
+An attempt to start the daemon took 18.47 secs.
+The client will now receive all logging from the daemon (pid: 14620). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-14620.out.log
Daemon will be stopped at the end of the build stopping after processing
Closing daemon's stdin at end of input.
The daemon will no longer process any standard input.
-Using 3 worker leases.
-Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@19cd60f
-Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@19cd60f
-Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@43af4
+Using 4 worker leases.
+Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@553d95
+Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@553d95
+Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6703ae
Starting Build
-Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@58e2c9
+Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b40fbd
Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'.
Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'.
Included projects: [root project 'gatk-fermilite']
@@ -1349,75 +1385,75 @@
Linking the generated javadoc to the system JDK API documentation
All projects evaluated.
Selected primary task 'test' from project :
-Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@136f71d
+Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@641f8e
Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test']
-Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@43af4
-Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@bf0a43
-Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@761b4
-:compileJava (Thread[#29,Daemon worker,5,main]) started.
+Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6703ae
+Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@44ac9d
+Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1a887e1
+:compileJava (Thread[#41,Task worker for ':',5,main]) started.
:compileJava
-Putting task artifact state for task ':compileJava' into context took 0.014 secs.
-Skipping task ':compileJava' as it is up-to-date (took 0.074 secs).
+Putting task artifact state for task ':compileJava' into context took 0.056 secs.
+Skipping task ':compileJava' as it is up-to-date (took 0.598 secs).
:compileJava UP-TO-DATE
-:compileJava (Thread[#29,Daemon worker,5,main]) completed. Took 0.568 secs.
-:buildFermiLib (Thread[#29,Daemon worker,5,main]) started.
+:compileJava (Thread[#41,Task worker for ':',5,main]) completed. Took 1.166 secs.
+:buildFermiLib (Thread[#41,Task worker for ':',5,main]) started.
:buildFermiLib
Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs.
-Skipping task ':buildFermiLib' as it is up-to-date (took 0.008 secs).
+Skipping task ':buildFermiLib' as it is up-to-date (took 0.069 secs).
:buildFermiLib UP-TO-DATE
-:buildFermiLib (Thread[#29,Daemon worker,5,main]) completed. Took 0.018 secs.
-:processResources (Thread[#29,Daemon worker,5,main]) started.
+:buildFermiLib (Thread[#41,Task worker for ':',5,main]) completed. Took 0.189 secs.
+:processResources (Thread[#41,Task worker for ':',5,main]) started.
:processResources
Putting task artifact state for task ':processResources' into context took 0.0 secs.
file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found
Skipping task ':processResources' as it has no source files and no previous output files.
:processResources NO-SOURCE
-:processResources (Thread[#29,Daemon worker,5,main]) completed. Took 0.006 secs.
-:classes (Thread[#29,Daemon worker,5,main]) started.
+:processResources (Thread[#41,Task worker for ':',5,main]) completed. Took 0.077 secs.
+:classes (Thread[#41,Task worker for ':',5,main]) started.
:classes
Skipping task ':classes' as it has no actions.
:classes UP-TO-DATE
-:classes (Thread[#29,Daemon worker,5,main]) completed. Took 0.002 secs.
-:compileTestJava (Thread[#29,Daemon worker,5,main]) started.
+:classes (Thread[#41,Task worker for ':',5,main]) completed. Took 0.03 secs.
+:compileTestJava (Thread[#41,Task worker for ':',5,main]) started.
:compileTestJava
Putting task artifact state for task ':compileTestJava' into context took 0.0 secs.
-Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1494a8c
+Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1fbdc2d
Loading the Maven rules...
Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian
Passing through org.beanshell:bsh:jar:debian
Passing through com.beust:jcommander:jar:debian
-Up-to-date check for task ':compileTestJava' took 6.501 secs. It is not up-to-date because:
+Up-to-date check for task ':compileTestJava' took 15.694 secs. It is not up-to-date because:
No history is available.
All input files are considered out-of-date for incremental task ':compileTestJava'.
Compiling with JDK Java compiler API.
-:compileTestJava (Thread[#29,Daemon worker,5,main]) completed. Took 23.049 secs.
-:processTestResources (Thread[#29,Daemon worker,5,main]) started.
+:compileTestJava (Thread[#41,Task worker for ':',5,main]) completed. Took 40.514 secs.
+:processTestResources (Thread[#41,Task worker for ':',5,main]) started.
:processTestResources
Putting task artifact state for task ':processTestResources' into context took 0.0 secs.
file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found
Skipping task ':processTestResources' as it has no source files and no previous output files.
:processTestResources NO-SOURCE
-:processTestResources (Thread[#29,Daemon worker,5,main]) completed. Took 0.006 secs.
-:testClasses (Thread[#29,Daemon worker,5,main]) started.
+:processTestResources (Thread[#41,Task worker for ':',5,main]) completed. Took 0.056 secs.
+:testClasses (Thread[#41,Task worker for ':',5,main]) started.
:testClasses
Skipping task ':testClasses' as it has no actions.
-:testClasses (Thread[#29,Daemon worker,5,main]) completed. Took 0.002 secs.
-:test (Thread[#29,Daemon worker,5,main]) started.
+:testClasses (Thread[#41,Task worker for ':',5,main]) completed. Took 0.026 secs.
+:test (Thread[#41,Task worker for ':',5,main]) started.
:test
Putting task artifact state for task ':test' into context took 0.0 secs.
-Up-to-date check for task ':test' took 0.682 secs. It is not up-to-date because:
+Up-to-date check for task ':test' took 3.05 secs. It is not up-to-date because:
No history is available.
-Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-armhf/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath7856512501778877252txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1'
+Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-armhf/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath1093580209060798003txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1'
Successfully started process 'Gradle Test Executor 1'
Gradle Test Executor 1 started executing tests.
Gradle Test Executor 1 finished executing tests.
Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped)
-Finished generating test XML results (0.114 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test
+Finished generating test XML results (0.21 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test
Generating HTML test report...
-Finished generating test html results (0.073 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test
-:test (Thread[#29,Daemon worker,5,main]) completed. Took 10.632 secs.
+Finished generating test html results (0.427 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test
+:test (Thread[#41,Task worker for ':',5,main]) completed. Took 22.73 secs.
-BUILD SUCCESSFUL in 1m 2s
+BUILD SUCCESSFUL in 2m 45s
4 actionable tasks: 2 executed, 2 up-to-date
make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg'
create-stamp debian/debhelper-build-stamp
@@ -1442,9 +1478,9 @@
dpkg-gencontrol: warning: Depends field of package libgatk-fermilite-java: substitution variable ${java:Depends} used, but is not defined
dh_md5sums
dh_builddeb
-dpkg-deb: building package 'libgatk-fermilite-java' in '../libgatk-fermilite-java_1.2.1+dfsg-2_all.deb'.
dpkg-deb: building package 'libgatk-fermilite-jni' in '../libgatk-fermilite-jni_1.2.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libgatk-fermilite-jni-dbgsym' in '../libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_armhf.deb'.
+dpkg-deb: building package 'libgatk-fermilite-java' in '../libgatk-fermilite-java_1.2.1+dfsg-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_armhf.buildinfo
dpkg-genchanges --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -1452,12 +1488,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/8268/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/8268/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/10274 and its subdirectories
-I: Current time: Mon Feb 3 01:07:37 -12 2025
-I: pbuilder-time-stamp: 1738588057
+I: removing directory /srv/workspace/pbuilder/8268 and its subdirectories
+I: Current time: Tue Feb 4 03:22:10 +14 2025
+I: pbuilder-time-stamp: 1738588930