Diff of the two buildlogs: -- --- b1/build.log 2024-11-20 06:58:05.427917757 +0000 +++ b2/build.log 2024-11-20 07:09:49.816151200 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Nov 19 18:52:30 -12 2024 -I: pbuilder-time-stamp: 1732085550 +I: Current time: Wed Nov 20 20:58:33 +14 2024 +I: pbuilder-time-stamp: 1732085913 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13302/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32565/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 20 06:58 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32565/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32565/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='6a70ac8c8ec04293b48aaacba064da96' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13302' - PS1='# ' - PS2='> ' + INVOCATION_ID=ec15ad785b624911b84c79af43fd0527 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32565 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MpJhjcB8/pbuilderrc_eXag --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MpJhjcB8/b1 --logfile b1/build.log fenicsx-performance-tests_0.9.0-2.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MpJhjcB8/pbuilderrc_9xSZ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MpJhjcB8/b2 --logfile b2/build.log fenicsx-performance-tests_0.9.0-2.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-27-armmp-lpae #1 SMP Debian 6.1.115-1 (2024-11-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/13302/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/32565/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -423,7 +455,7 @@ Get: 301 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.2.0-1 [731 kB] Get: 302 http://deb.debian.org/debian unstable/main armhf python3-ffcx all 1:0.9.0-2 [94.9 kB] Get: 303 http://deb.debian.org/debian unstable/main armhf libdolfinx-dev armhf 1:0.9.0-3 [201 kB] -Fetched 183 MB in 3s (58.5 MB/s) +Fetched 183 MB in 9s (20.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19686 files and directories currently installed.) @@ -1398,8 +1430,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Nov 20 06:54:13 UTC 2024. -Universal Time is now: Wed Nov 20 06:54:13 UTC 2024. +Local time is now: Wed Nov 20 07:02:50 UTC 2024. +Universal Time is now: Wed Nov 20 07:02:50 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:armhf (1.83.0-3.2+b1) ... @@ -1705,7 +1737,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes +I: user script /srv/workspace/pbuilder/32565/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/32565/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.9.0-2 dpkg-buildpackage: info: source distribution unstable @@ -1788,8 +1824,8 @@ -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall --- Configuring done (6.8s) --- Generating done (0.0s) +-- Configuring done (9.3s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1801,7 +1837,7 @@ -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -1810,19 +1846,21 @@ make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' [ 9%] Generating Poisson.c -[ 18%] Generating Elasticity.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Poisson.py +[ 18%] Generating Elasticity.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Elasticity.py cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' [ 27%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -[ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mesh.cpp -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mesh.cpp +[ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/main.cpp +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp +[ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp In file included from /usr/include/c++/14/vector:72, from /usr/include/c++/14/chrono:47, from /usr/include/spdlog/common.h:10, @@ -1889,6 +1927,21 @@ | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1417 | std::random_access_iterator_tag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp: In function 'void {anonymous}::unpack_fn(std::span, std::span, std::span, std::function)': +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:39:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 39 | void unpack_fn(std::span in, std::span idx, + | ^~~~~~~~~ +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:39:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In file included from /usr/include/basix/finite-element.h:12, + from /usr/include/dolfinx/fem/FiniteElement.h:11, + from /usr/include/dolfinx/fem/Function.h:10, + from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.h:9, + from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:7: +/usr/include/basix/precompute.h: In function 'void basix::precompute::apply_matrix(std::span, std::mdspan >, std::span, std::size_t, std::size_t) [with T = double; E = double]': +/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 243 | void apply_matrix( + | ^~~~~~~~~~~~ +/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function 'constexpr void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter(std::ranges::less&, std::identity&):: >]': /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, @@ -1907,6 +1960,8 @@ /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp In file included from /usr/include/basix/finite-element.h:12, from /usr/include/dolfinx/fem/FiniteElement.h:11, from /usr/include/dolfinx/fem/Function.h:10, @@ -1950,12 +2005,10 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o /usr/include/dolfinx/common/MPI.h: In function 'std::vector::type> dolfinx::MPI::distribute_data(MPI_Comm, std::span, MPI_Comm, const U&, int) [with U = std::vector >]': /usr/include/dolfinx/common/MPI.h:676:1: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 676 | distribute_data(MPI_Comm comm0, std::span indices, | ^~~~~~~~~~~~~~~ -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp /usr/include/dolfinx/mesh/utils.h: In function 'dolfinx::mesh::Mesh::type> dolfinx::mesh::create_mesh(MPI_Comm, MPI_Comm, std::span, const dolfinx::fem::CoordinateElement::type>&, MPI_Comm, const U&, std::array, const CellPartitionFunction&) [with U = std::vector >]': /usr/include/dolfinx/mesh/utils.h:783:64: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 783 | Mesh> create_mesh( @@ -1991,6 +2044,11 @@ | ^~~~~~~~ /usr/include/dolfinx/mesh/utils.h:911:12: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 /usr/include/dolfinx/mesh/utils.h:911:12: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In file included from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:14: +/usr/include/dolfinx/fem/DirichletBC.h: In member function 'void dolfinx::fem::DirichletBC::set(std::span<_Type, 4294967295>, std::optional >, T) const [with T = double; U = double]': +/usr/include/dolfinx/fem/DirichletBC.h:495:8: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 495 | void set(std::span x, std::optional> x0, + | ^~~ In function 'std::tuple, std::vector >, std::array, std::optional > >, std::optional > > > dolfinx::refinement::plaza::impl::compute_refinement(MPI_Comm, std::span, const dolfinx::graph::AdjacencyList&, const dolfinx::mesh::Mesh&, std::span, std::span, dolfinx::refinement::Option) [with T = double]', inlined from 'std::tuple, std::vector >, std::array, std::optional > >, std::optional > > > dolfinx::refinement::plaza::compute_refinement_data(const dolfinx::mesh::Mesh&, std::optional >, dolfinx::refinement::Option) [with T = double]' at /usr/include/dolfinx/refinement/plaza.h:533:8, inlined from 'std::tuple, std::optional > >, std::optional > > > dolfinx::refinement::refine(const dolfinx::mesh::Mesh&, std::optional >, const dolfinx::mesh::CellPartitionFunction&, Option) [with T = double]' at /usr/include/dolfinx/refinement/refine.h:68:8: @@ -2002,6 +2060,11 @@ 73 | mesh::Mesh mesh1 = mesh::create_mesh( | ^~~~~ /usr/include/dolfinx/refinement/refine.h:73:17: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In file included from /usr/include/dolfinx/fem/Function.h:12: +/usr/include/dolfinx/fem/interpolate.h: In function 'std::vector dolfinx::fem::interpolation_coords(const FiniteElement&, const dolfinx::mesh::Geometry&, std::span) [with T = double]': +/usr/include/dolfinx/fem/interpolate.h:72:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 72 | cmap.tabulate(0, X, Xshape, phi_b); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In member function 'constexpr std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, std::initializer_list<_Tp>) [with _Tp = long long int; _Alloc = std::allocator]', inlined from 'dolfinx::mesh::Mesh dolfinx::mesh::impl::build_tet(MPI_Comm, MPI_Comm, std::array, 2>, std::array, const dolfinx::mesh::CellPartitionFunction&) [with T = double]' at /usr/include/dolfinx/mesh/generation.h:379:19: /usr/include/c++/14/bits/stl_vector.h:1416:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -2039,8 +2102,15 @@ /usr/include/dolfinx/fem/interpolate.h:72:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 72 | cmap.tabulate(0, X, Xshape, phi_b); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp +[ 72%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mem.cpp +In file included from /usr/include/dolfinx/fem/assemble_matrix_impl.h:13, + from /usr/include/dolfinx/fem/assembler.h:9, + from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:17: +/usr/include/dolfinx/fem/utils.h: In function 'void dolfinx::fem::pack_coefficients(const Form&, IntegralType, int, std::span<_Type, 4294967295>, int) [with T = double; U = double]': +/usr/include/dolfinx/fem/utils.h:1062:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1062 | void pack_coefficients(const Form& form, IntegralType integral_type, + | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/dolfinx/fem/assemble_matrix_impl.h:13, from /usr/include/dolfinx/fem/assembler.h:9, from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:16: @@ -2053,6 +2123,35 @@ 1305 | pack_coefficients(form, key.first, key.second, val.first, val.second); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In file included from /usr/include/dolfinx/fem/CoordinateElement.h:17, + from /usr/include/dolfinx/fem/FunctionSpace.h:9, + from /usr/include/dolfinx/fem/Function.h:11: +/usr/include/dolfinx/common/math.h: In function 'auto dolfinx::math::det(Matrix) [with Matrix = std::mdspan, std::layout_right, std::default_accessor >]': +/usr/include/dolfinx/common/math.h:87:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 87 | auto det(Matrix A) + | ^~~ +/usr/include/dolfinx/fem/CoordinateElement.h: In static member function 'static double dolfinx::fem::CoordinateElement::compute_jacobian_determinant(const U&, std::span) [with U = std::mdspan, std::layout_right, std::default_accessor >; T = double]': +/usr/include/dolfinx/fem/CoordinateElement.h:152:3: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 152 | compute_jacobian_determinant(const U& J, std::span w) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::inv(U, V) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >]': +/usr/include/dolfinx/common/math.h:125:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 125 | void inv(U A, V B) + | ^~~ +/usr/include/dolfinx/common/math.h:125:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 +/usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::pinv(U, V) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >]': +/usr/include/dolfinx/common/math.h:212:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 212 | void pinv(U A, V P) + | ^~~~ +/usr/include/dolfinx/common/math.h:212:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 +/usr/include/dolfinx/common/math.h:246:8: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 246 | inv(ATA, Inv); + | ~~~^~~~~~~~~~ +/usr/include/dolfinx/fem/utils.h: In function 'void dolfinx::fem::pack_coefficients(const Form&, std::map, std::pair, int> >&) [with T = double; U = double]': +/usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1305 | pack_coefficients(form, key.first, key.second, val.first, val.second); + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 /usr/include/basix/finite-element.h: In member function 'void basix::FiniteElement::transform_data(std::span, int, uint32_t, const std::map, std::pair, std::array > > > >&, OP) const [with T = double; bool post = false; OP = void (*)(std::span, std::mdspan, std::layout_right, std::default_accessor >, std::span, unsigned int, unsigned int); F = double]': /usr/include/basix/finite-element.h:1733:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 1733 | void FiniteElement::transform_data( @@ -2125,6 +2224,22 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1917 | precompute::apply_tranpose_matrix_right); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/interpolate.h: In function 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double; U = double]': +/usr/include/dolfinx/fem/interpolate.h:703:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 703 | void interpolate(Function& u, std::span f, + | ^~~~~~~~~~~ +/usr/include/dolfinx/fem/interpolate.h:954:18: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 954 | cmap.tabulate(1, X, Xshape, phi_b); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/interpolate.h:1008:52: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1008 | detJ[p] = cmap.compute_jacobian_determinant(_J, det_scratch); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In static member function 'static void dolfinx::fem::CoordinateElement::compute_jacobian_inverse(const U&, V&&) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >&; T = double]', + inlined from 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double; U = double]' at /usr/include/dolfinx/fem/interpolate.h:1007:38: +/usr/include/dolfinx/fem/CoordinateElement.h:142:17: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 142 | math::pinv(J, K); + | ~~~~~~~~~~^~~~~~ +/usr/include/dolfinx/fem/CoordinateElement.h:142:17: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 /usr/include/basix/finite-element.h: In member function 'void basix::FiniteElement::transform_data(std::span, int, uint32_t, const std::map, std::pair, std::array > > > >&, OP) const [with T = double; bool post = true; OP = void (*)(std::span, std::mdspan, std::layout_right, std::default_accessor >, std::span, unsigned int, unsigned int); F = double]': /usr/include/basix/finite-element.h:1733:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 1733 | void FiniteElement::transform_data( @@ -2212,6 +2327,12 @@ 125 | void inv(U A, V B) | ^~~ /usr/include/dolfinx/common/math.h:125:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 +/usr/include/dolfinx/fem/Function.h: In member function 'void dolfinx::fem::Function::interpolate(const std::function, std::vector >(std::mdspan >)>&, std::span) [with T = double; U = double]': +/usr/include/dolfinx/fem/Function.h:234:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 234 | fem::interpolate(*this, std::span(fx.data(), fx.size()), + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 235 | _fshape, cells); + | ~~~~~~~~~~~~~~~ /usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::pinv(U, V) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >]': /usr/include/dolfinx/common/math.h:212:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 212 | void pinv(U A, V P) @@ -2236,138 +2357,14 @@ 142 | math::pinv(J, K); | ~~~~~~~~~~^~~~~~ /usr/include/dolfinx/fem/CoordinateElement.h:142:17: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 +[ 81%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o +/usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/Elasticity.c /usr/include/dolfinx/fem/Function.h: In member function 'void dolfinx::fem::Function::interpolate(const std::function, std::vector >(std::mdspan >)>&, std::span) [with T = double; U = double]': /usr/include/dolfinx/fem/Function.h:234:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 234 | fem::interpolate(*this, std::span(fx.data(), fx.size()), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | _fshape, cells); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/dolfinx/fem/assembler.h:11: -/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]': -/usr/include/dolfinx/fem/assemble_vector_impl.h:1147:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1147 | void assemble_vector( - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp: In function 'void {anonymous}::unpack_fn(std::span, std::span, std::span, std::function)': -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:39:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 39 | void unpack_fn(std::span in, std::span idx, - | ^~~~~~~~~ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:39:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -In file included from /usr/include/basix/finite-element.h:12, - from /usr/include/dolfinx/fem/FiniteElement.h:11, - from /usr/include/dolfinx/fem/Function.h:10, - from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.h:9, - from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:7: -/usr/include/basix/precompute.h: In function 'void basix::precompute::apply_matrix(std::span, std::mdspan >, std::span, std::size_t, std::size_t) [with T = double; E = double]': -/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 243 | void apply_matrix( - | ^~~~~~~~~~~~ -/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_exterior_facets(std::span<_Type, 4294967295>, mdspan2_t, std::span >, int, auto:188, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:189, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:190, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, T, std::span) [with T = double; int _bs = -1; auto:188 = std::function; auto:189 = std::function, std::span, int, int)>; auto:190 = std::function, std::span, int, int)>]': -/usr/include/dolfinx/fem/assemble_vector_impl.h:263:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 263 | void _lift_bc_exterior_facets( - | ^~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_cells(std::span<_Type, 4294967295>, mdspan2_t, std::span >, auto:185, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:186, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:187, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, T) [with T = double; int _bs0 = -1; int _bs1 = -1; auto:185 = std::function; auto:186 = std::function, std::span, int, int)>; auto:187 = std::function, std::span, int, int)>]': -/usr/include/dolfinx/fem/assemble_vector_impl.h:76:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 76 | void _lift_bc_cells( - | ^~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_interior_facets(std::span<_Type, 4294967295>, mdspan2_t, std::span >, int, auto:191, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:192, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:193, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, std::span, T) [with T = double; int _bs = -1; auto:191 = std::function; auto:192 = std::function, std::span, int, int)>; auto:193 = std::function, std::span, int, int)>]': -/usr/include/dolfinx/fem/assemble_vector_impl.h:412:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 412 | void _lift_bc_interior_facets( - | ^~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::lift_bc(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&, std::span, std::span, std::span, T) [with T = double; U = double]': -/usr/include/dolfinx/fem/assemble_vector_impl.h:929:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 929 | void lift_bc(std::span b, const Form& a, mdspan2_t x_dofmap, - | ^~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:929:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -/usr/include/dolfinx/fem/assemble_vector_impl.h:1003:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1003 | _lift_bc_cells(b, x_dofmap, x, kernel, cells, - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1004 | {dofmap0, bs0, a.domain(IntegralType::cell, i, *mesh0)}, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1005 | P0, - | ~~~ - 1006 | {dofmap1, bs1, a.domain(IntegralType::cell, i, *mesh1)}, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1007 | P1T, constants, coeffs, cstride, cell_info0, cell_info1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1008 | bc_values1, bc_markers1, x0, alpha); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:1028:29: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1028 | _lift_bc_exterior_facets( - | ~~~~~~~~~~~~~~~~~~~~~~~~^ - 1029 | b, x_dofmap, x, num_facets_per_cell, kernel, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1030 | a.domain(IntegralType::exterior_facet, i), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1031 | {dofmap0, bs0, a.domain(IntegralType::exterior_facet, i, *mesh0)}, P0, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1032 | {dofmap1, bs1, a.domain(IntegralType::exterior_facet, i, *mesh1)}, P1T, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1033 | constants, coeffs, cstride, cell_info0, cell_info1, bc_values1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1034 | bc_markers1, x0, alpha, perms); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:1043:29: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1043 | _lift_bc_interior_facets( - | ~~~~~~~~~~~~~~~~~~~~~~~~^ - 1044 | b, x_dofmap, x, num_facets_per_cell, kernel, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1045 | a.domain(IntegralType::interior_facet, i), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1046 | {dofmap0, bs0, a.domain(IntegralType::interior_facet, i, *mesh0)}, P0, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1047 | {dofmap1, bs1, a.domain(IntegralType::interior_facet, i, *mesh1)}, P1T, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1048 | constants, coeffs, cstride, cell_info0, cell_info1, perms, bc_values1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1049 | bc_markers1, x0, alpha); - | ~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:14: -/usr/include/dolfinx/fem/DirichletBC.h: In member function 'void dolfinx::fem::DirichletBC::set(std::span<_Type, 4294967295>, std::optional >, T) const [with T = double; U = double]': -/usr/include/dolfinx/fem/DirichletBC.h:495:8: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 495 | void set(std::span x, std::optional> x0, - | ^~~ -In function 'void dolfinx::fem::impl::apply_lifting(std::span<_Type, 4294967295>, std::vector > >, const std::vector >&, const std::vector, std::pair, int> > >&, const std::vector > > >&, const std::vector >&, T) [with T = double; U = double]', - inlined from 'void dolfinx::fem::apply_lifting(std::span<_Type, 4294967295>, const std::vector > >&, const std::vector >&, const std::vector, std::pair, int> > >&, const std::vector > > >&, const std::vector >&, T) [with T = double; U = double]' at /usr/include/dolfinx/fem/assembler.h:165:25: -/usr/include/dolfinx/fem/assemble_vector_impl.h:1121:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1121 | bc->set(bc_values1, std::nullopt, 1); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:1126:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1126 | lift_bc(b, *a[j], x_dofmap, x, constants[j], coeffs[j], bc_values1, - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1127 | bc_markers1, x0[j], alpha); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:1126:19: note: parameter passing for argument of type 'const std::span' changed in GCC 7.1 -/usr/include/dolfinx/fem/assemble_vector_impl.h:1131:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1131 | lift_bc(b, *a[j], x_dofmap, x, constants[j], coeffs[j], bc_values1, - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1132 | bc_markers1, std::span(), alpha); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:1131:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -In file included from /usr/include/dolfinx/fem/Function.h:12: -/usr/include/dolfinx/fem/interpolate.h: In function 'std::vector dolfinx::fem::interpolation_coords(const FiniteElement&, const dolfinx::mesh::Geometry&, std::span) [with T = double]': -/usr/include/dolfinx/fem/interpolate.h:72:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 72 | cmap.tabulate(0, X, Xshape, phi_b); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]', - inlined from 'void dolfinx::fem::assemble_vector(std::span<_Type, 4294967295>, const Form&, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]' at /usr/include/dolfinx/fem/assembler.h:116:24, - inlined from 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > elastic::problem(std::shared_ptr >, int)' at /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:216:26: -/usr/include/dolfinx/fem/assemble_vector_impl.h:1297:20: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1297 | assemble_vector(b, L, mesh->geometry().dofmap(), mesh->geometry().x(), - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1298 | constants, coefficients); - | ~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp: In function 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > elastic::problem(std::shared_ptr >, int)': -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:222:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 222 | bc->set(b.mutable_array(), std::nullopt); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/dolfinx/fem/assemble_matrix_impl.h:13, - from /usr/include/dolfinx/fem/assembler.h:9, - from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:17: -/usr/include/dolfinx/fem/utils.h: In function 'void dolfinx::fem::pack_coefficients(const Form&, IntegralType, int, std::span<_Type, 4294967295>, int) [with T = double; U = double]': -/usr/include/dolfinx/fem/utils.h:1062:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1062 | void pack_coefficients(const Form& form, IntegralType integral_type, - | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/basix/finite-element.h:12, from /usr/include/dolfinx/fem/FiniteElement.h:11, from /usr/include/dolfinx/fem/Function.h:10, @@ -2383,69 +2380,6 @@ 243 | void apply_matrix( | ^~~~~~~~~~~~ /usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -/usr/include/dolfinx/fem/utils.h: In function 'void dolfinx::fem::pack_coefficients(const Form&, std::map, std::pair, int> >&) [with T = double; U = double]': -/usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1305 | pack_coefficients(form, key.first, key.second, val.first, val.second); - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -In file included from /usr/include/dolfinx/fem/CoordinateElement.h:17, - from /usr/include/dolfinx/fem/FunctionSpace.h:9, - from /usr/include/dolfinx/fem/Function.h:11: -/usr/include/dolfinx/common/math.h: In function 'auto dolfinx::math::det(Matrix) [with Matrix = std::mdspan, std::layout_right, std::default_accessor >]': -/usr/include/dolfinx/common/math.h:87:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 87 | auto det(Matrix A) - | ^~~ -/usr/include/dolfinx/fem/CoordinateElement.h: In static member function 'static double dolfinx::fem::CoordinateElement::compute_jacobian_determinant(const U&, std::span) [with U = std::mdspan, std::layout_right, std::default_accessor >; T = double]': -/usr/include/dolfinx/fem/CoordinateElement.h:152:3: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 152 | compute_jacobian_determinant(const U& J, std::span w) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::inv(U, V) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >]': -/usr/include/dolfinx/common/math.h:125:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 125 | void inv(U A, V B) - | ^~~ -/usr/include/dolfinx/common/math.h:125:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 -/usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::pinv(U, V) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >]': -/usr/include/dolfinx/common/math.h:212:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 212 | void pinv(U A, V P) - | ^~~~ -/usr/include/dolfinx/common/math.h:212:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 -/usr/include/dolfinx/common/math.h:246:8: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 246 | inv(ATA, Inv); - | ~~~^~~~~~~~~~ -/usr/include/dolfinx/fem/interpolate.h: In function 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double; U = double]': -/usr/include/dolfinx/fem/interpolate.h:703:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 703 | void interpolate(Function& u, std::span f, - | ^~~~~~~~~~~ -/usr/include/dolfinx/fem/interpolate.h:954:18: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 954 | cmap.tabulate(1, X, Xshape, phi_b); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/interpolate.h:1008:52: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1008 | detJ[p] = cmap.compute_jacobian_determinant(_J, det_scratch); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In static member function 'static void dolfinx::fem::CoordinateElement::compute_jacobian_inverse(const U&, V&&) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >&; T = double]', - inlined from 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double; U = double]' at /usr/include/dolfinx/fem/interpolate.h:1007:38: -/usr/include/dolfinx/fem/CoordinateElement.h:142:17: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 142 | math::pinv(J, K); - | ~~~~~~~~~~^~~~~~ -/usr/include/dolfinx/fem/CoordinateElement.h:142:17: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 -/usr/include/dolfinx/fem/Function.h: In member function 'void dolfinx::fem::Function::interpolate(const std::function, std::vector >(std::mdspan >)>&, std::span) [with T = double; U = double]': -/usr/include/dolfinx/fem/Function.h:234:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 234 | fem::interpolate(*this, std::span(fx.data(), fx.size()), - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 235 | _fshape, cells); - | ~~~~~~~~~~~~~~~ -[ 72%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mem.cpp -In file included from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp:12: -/usr/include/dolfinx/fem/DirichletBC.h: In member function 'void dolfinx::fem::DirichletBC::set(std::span<_Type, 4294967295>, std::optional >, T) const [with T = double; U = double]': -/usr/include/dolfinx/fem/DirichletBC.h:495:8: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 495 | void set(std::span x, std::optional> x0, - | ^~~ -In file included from /usr/include/dolfinx/fem/Function.h:12: -/usr/include/dolfinx/fem/interpolate.h: In function 'std::vector dolfinx::fem::interpolation_coords(const FiniteElement&, const dolfinx::mesh::Geometry&, std::span) [with T = double]': -/usr/include/dolfinx/fem/interpolate.h:72:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 72 | cmap.tabulate(0, X, Xshape, phi_b); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/dolfinx/fem/assembler.h:11: /usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]': /usr/include/dolfinx/fem/assemble_vector_impl.h:1147:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 @@ -2557,8 +2491,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1869 | precompute::apply_matrix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 81%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -/usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/Elasticity.c /usr/include/dolfinx/fem/assembler.h: In function 'void dolfinx::fem::assemble_vector(std::span<_Type, 4294967295>, const Form&) [with T = double; U = double]': /usr/include/dolfinx/fem/assembler.h:124:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 124 | void assemble_vector(std::span b, const Form& L) @@ -2577,6 +2509,88 @@ | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 | [](T /*a*/, T b) { return b; }); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/dolfinx/fem/assembler.h:11: +/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]': +/usr/include/dolfinx/fem/assemble_vector_impl.h:1147:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1147 | void assemble_vector( + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp: In function 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > cgpoisson::problem(std::shared_ptr >, int, std::string)': +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:154:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 154 | bc->set(un->x()->mutable_array(), std::nullopt, -1.0); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:154:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In file included from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp:12: +/usr/include/dolfinx/fem/DirichletBC.h: In member function 'void dolfinx::fem::DirichletBC::set(std::span<_Type, 4294967295>, std::optional >, T) const [with T = double; U = double]': +/usr/include/dolfinx/fem/DirichletBC.h:495:8: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 495 | void set(std::span x, std::optional> x0, + | ^~~ +In file included from /usr/include/dolfinx/fem/Function.h:12: +/usr/include/dolfinx/fem/interpolate.h: In function 'std::vector dolfinx::fem::interpolation_coords(const FiniteElement&, const dolfinx::mesh::Geometry&, std::span) [with T = double]': +/usr/include/dolfinx/fem/interpolate.h:72:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 72 | cmap.tabulate(0, X, Xshape, phi_b); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_exterior_facets(std::span<_Type, 4294967295>, mdspan2_t, std::span >, int, auto:188, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:189, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:190, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, T, std::span) [with T = double; int _bs = -1; auto:188 = std::function; auto:189 = std::function, std::span, int, int)>; auto:190 = std::function, std::span, int, int)>]': +/usr/include/dolfinx/fem/assemble_vector_impl.h:263:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 263 | void _lift_bc_exterior_facets( + | ^~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_cells(std::span<_Type, 4294967295>, mdspan2_t, std::span >, auto:185, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:186, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:187, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, T) [with T = double; int _bs0 = -1; int _bs1 = -1; auto:185 = std::function; auto:186 = std::function, std::span, int, int)>; auto:187 = std::function, std::span, int, int)>]': +/usr/include/dolfinx/fem/assemble_vector_impl.h:76:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 76 | void _lift_bc_cells( + | ^~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_interior_facets(std::span<_Type, 4294967295>, mdspan2_t, std::span >, int, auto:191, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:192, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:193, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, std::span, T) [with T = double; int _bs = -1; auto:191 = std::function; auto:192 = std::function, std::span, int, int)>; auto:193 = std::function, std::span, int, int)>]': +/usr/include/dolfinx/fem/assemble_vector_impl.h:412:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 412 | void _lift_bc_interior_facets( + | ^~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::lift_bc(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&, std::span, std::span, std::span, T) [with T = double; U = double]': +/usr/include/dolfinx/fem/assemble_vector_impl.h:929:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 929 | void lift_bc(std::span b, const Form& a, mdspan2_t x_dofmap, + | ^~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:929:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +/usr/include/dolfinx/fem/assemble_vector_impl.h:1003:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1003 | _lift_bc_cells(b, x_dofmap, x, kernel, cells, + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1004 | {dofmap0, bs0, a.domain(IntegralType::cell, i, *mesh0)}, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1005 | P0, + | ~~~ + 1006 | {dofmap1, bs1, a.domain(IntegralType::cell, i, *mesh1)}, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1007 | P1T, constants, coeffs, cstride, cell_info0, cell_info1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1008 | bc_values1, bc_markers1, x0, alpha); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:1028:29: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1028 | _lift_bc_exterior_facets( + | ~~~~~~~~~~~~~~~~~~~~~~~~^ + 1029 | b, x_dofmap, x, num_facets_per_cell, kernel, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1030 | a.domain(IntegralType::exterior_facet, i), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1031 | {dofmap0, bs0, a.domain(IntegralType::exterior_facet, i, *mesh0)}, P0, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1032 | {dofmap1, bs1, a.domain(IntegralType::exterior_facet, i, *mesh1)}, P1T, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1033 | constants, coeffs, cstride, cell_info0, cell_info1, bc_values1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1034 | bc_markers1, x0, alpha, perms); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:1043:29: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1043 | _lift_bc_interior_facets( + | ~~~~~~~~~~~~~~~~~~~~~~~~^ + 1044 | b, x_dofmap, x, num_facets_per_cell, kernel, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1045 | a.domain(IntegralType::interior_facet, i), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1046 | {dofmap0, bs0, a.domain(IntegralType::interior_facet, i, *mesh0)}, P0, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1047 | {dofmap1, bs1, a.domain(IntegralType::interior_facet, i, *mesh1)}, P1T, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1048 | constants, coeffs, cstride, cell_info0, cell_info1, perms, bc_values1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1049 | bc_markers1, x0, alpha); + | ~~~~~~~~~~~~~~~~~~~~~~~ +[ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o +/usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/Poisson.c In file included from /usr/include/dolfinx/fem/assemble_matrix_impl.h:13, from /usr/include/dolfinx/fem/assembler.h:9, from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp:16: @@ -2584,11 +2598,23 @@ /usr/include/dolfinx/fem/utils.h:1062:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 1062 | void pack_coefficients(const Form& form, IntegralType integral_type, | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp: In function 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > cgpoisson::problem(std::shared_ptr >, int, std::string)': -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:154:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 154 | bc->set(un->x()->mutable_array(), std::nullopt, -1.0); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:154:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In function 'void dolfinx::fem::impl::apply_lifting(std::span<_Type, 4294967295>, std::vector > >, const std::vector >&, const std::vector, std::pair, int> > >&, const std::vector > > >&, const std::vector >&, T) [with T = double; U = double]', + inlined from 'void dolfinx::fem::apply_lifting(std::span<_Type, 4294967295>, const std::vector > >&, const std::vector >&, const std::vector, std::pair, int> > >&, const std::vector > > >&, const std::vector >&, T) [with T = double; U = double]' at /usr/include/dolfinx/fem/assembler.h:165:25: +/usr/include/dolfinx/fem/assemble_vector_impl.h:1121:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1121 | bc->set(bc_values1, std::nullopt, 1); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:1126:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1126 | lift_bc(b, *a[j], x_dofmap, x, constants[j], coeffs[j], bc_values1, + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1127 | bc_markers1, x0[j], alpha); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:1126:19: note: parameter passing for argument of type 'const std::span' changed in GCC 7.1 +/usr/include/dolfinx/fem/assemble_vector_impl.h:1131:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1131 | lift_bc(b, *a[j], x_dofmap, x, constants[j], coeffs[j], bc_values1, + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1132 | bc_markers1, std::span(), alpha); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:1131:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 /usr/include/dolfinx/fem/utils.h: In function 'void dolfinx::fem::pack_coefficients(const Form&, std::map, std::pair, int> >&) [with T = double; U = double]': /usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 1305 | pack_coefficients(form, key.first, key.second, val.first, val.second); @@ -2618,6 +2644,18 @@ /usr/include/dolfinx/common/math.h:246:8: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 246 | inv(ATA, Inv); | ~~~^~~~~~~~~~ +In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]', + inlined from 'void dolfinx::fem::assemble_vector(std::span<_Type, 4294967295>, const Form&, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]' at /usr/include/dolfinx/fem/assembler.h:116:24, + inlined from 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > elastic::problem(std::shared_ptr >, int)' at /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:216:26: +/usr/include/dolfinx/fem/assemble_vector_impl.h:1297:20: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1297 | assemble_vector(b, L, mesh->geometry().dofmap(), mesh->geometry().x(), + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1298 | constants, coefficients); + | ~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp: In function 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > elastic::problem(std::shared_ptr >, int)': +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:222:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 222 | bc->set(b.mutable_array(), std::nullopt); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/dolfinx/fem/interpolate.h: In function 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double; U = double]': /usr/include/dolfinx/fem/interpolate.h:703:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 703 | void interpolate(Function& u, std::span f, @@ -2640,8 +2678,6 @@ | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | _fshape, cells); | ~~~~~~~~~~~~~~~ -[ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -/usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.21/arm-linux-gnueabihf-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/Poisson.c In file included from /usr/include/dolfinx/fem/assembler.h:11: /usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]': /usr/include/dolfinx/fem/assemble_vector_impl.h:1147:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 @@ -2892,67 +2928,67 @@ make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf ==== elasticity weak scaling (3 processes with ndofs=10000) ==== -[2024-11-19 18:56:46.553] [RANK: 0] [info] Using partitioner with 69312 cell data -[2024-11-19 18:56:46.555] [RANK: 0] [info] Compute partition of cells across ranks -[2024-11-19 18:56:46.555] [RANK: 0] [info] Building mesh dual graph -[2024-11-19 18:56:46.555] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-19 18:56:46.592] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-11-19 18:56:46.593] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:46.593] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:46.594] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-11-19 18:56:46.595] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) -[2024-11-19 18:56:46.596] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-11-19 18:56:52.006] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-19 18:56:52.016] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-19 18:56:52.038] [RANK: 0] [info] Extract basic topology: 68408->68408 -[2024-11-19 18:56:52.038] [RANK: 0] [info] Build local dual graph -[2024-11-19 18:56:52.038] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-19 18:56:52.068] [RANK: 0] [info] GPS pseudo-diameter:(120) 16471-1328 -[2024-11-19 18:56:52.073] [RANK: 0] [info] Create topology (single cell type) -[2024-11-19 18:56:52.073] [RANK: 0] [info] Create topology (generalised) -[2024-11-19 18:56:52.089] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-19 18:56:52.089] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-19 18:56:52.096] [RANK: 0] [info] Compute ghost indices -[2024-11-19 18:56:52.096] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-11-19 18:56:52.097] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-11-19 18:56:52.099] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-19 18:56:52.099] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-19 18:56:52.109] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:52.109] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:52.109] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:52.109] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:52.113] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-19 18:56:52.113] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-19 18:56:52.113] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-11-19 18:56:52.114] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:52.114] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:52.114] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-11-19 18:56:52.114] [RANK: 0] [info] Checking required entities per dimension -[2024-11-19 18:56:52.114] [RANK: 0] [info] Cell type: 0 dofmap: 17102x4 -[2024-11-19 18:56:52.119] [RANK: 0] [info] Global index computation -[2024-11-19 18:56:52.119] [RANK: 0] [info] Got 1 index_maps -[2024-11-19 18:56:52.119] [RANK: 0] [info] Get global indices -[2024-11-19 18:56:52.120] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:52.120] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:38.237] [RANK: 0] [info] Using partitioner with 69312 cell data +[2024-11-20 21:07:38.238] [RANK: 0] [info] Compute partition of cells across ranks +[2024-11-20 21:07:38.238] [RANK: 0] [info] Building mesh dual graph +[2024-11-20 21:07:38.238] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-11-20 21:07:38.302] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2024-11-20 21:07:38.363] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:38.364] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:38.364] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2024-11-20 21:07:38.374] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) +[2024-11-20 21:07:38.374] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2024-11-20 21:07:43.666] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-11-20 21:07:43.672] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-11-20 21:07:43.706] [RANK: 0] [info] Extract basic topology: 69504->69504 +[2024-11-20 21:07:43.706] [RANK: 0] [info] Build local dual graph +[2024-11-20 21:07:43.706] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-11-20 21:07:43.801] [RANK: 0] [info] GPS pseudo-diameter:(120) 637-16132 +[2024-11-20 21:07:43.811] [RANK: 0] [info] Create topology (single cell type) +[2024-11-20 21:07:43.812] [RANK: 0] [info] Create topology (generalised) +[2024-11-20 21:07:43.815] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-11-20 21:07:43.821] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-11-20 21:07:43.833] [RANK: 0] [info] Compute ghost indices +[2024-11-20 21:07:43.833] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2024-11-20 21:07:43.848] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2024-11-20 21:07:43.882] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-11-20 21:07:43.890] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-11-20 21:07:43.914] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:43.919] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:43.919] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:43.919] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:43.925] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-11-20 21:07:43.926] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-11-20 21:07:43.926] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2024-11-20 21:07:43.926] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:43.926] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:43.927] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2024-11-20 21:07:43.928] [RANK: 0] [info] Checking required entities per dimension +[2024-11-20 21:07:43.928] [RANK: 0] [info] Cell type: 0 dofmap: 17376x4 +[2024-11-20 21:07:43.936] [RANK: 0] [info] Global index computation +[2024-11-20 21:07:43.936] [RANK: 0] [info] Got 1 index_maps +[2024-11-20 21:07:43.936] [RANK: 0] [info] Get global indices +[2024-11-20 21:07:43.947] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:43.947] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times -[2024-11-19 18:56:52.122] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-11-19 18:56:52.160] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:52.160] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:52.229] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:52.229] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:52.231] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-19 18:56:52.231] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-11-19 18:56:52.233] [RANK: 0] [info] Checking required entities per dimension -[2024-11-19 18:56:52.233] [RANK: 0] [info] Cell type: 0 dofmap: 17102x4 -[2024-11-19 18:56:52.237] [RANK: 0] [info] Global index computation -[2024-11-19 18:56:52.237] [RANK: 0] [info] Got 1 index_maps -[2024-11-19 18:56:52.238] [RANK: 0] [info] Get global indices -[2024-11-19 18:56:52.238] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:52.238] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:52.239] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-19 18:56:52.239] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-19 18:56:52.239] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-11-19 18:56:52.282] [RANK: 0] [info] Column ghost size increased from 225 to 570 +[2024-11-20 21:07:43.951] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2024-11-20 21:07:44.000] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:44.007] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:44.078] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:44.078] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:44.080] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-11-20 21:07:44.080] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2024-11-20 21:07:44.082] [RANK: 0] [info] Checking required entities per dimension +[2024-11-20 21:07:44.083] [RANK: 0] [info] Cell type: 0 dofmap: 17376x4 +[2024-11-20 21:07:44.090] [RANK: 0] [info] Global index computation +[2024-11-20 21:07:44.091] [RANK: 0] [info] Got 1 index_maps +[2024-11-20 21:07:44.091] [RANK: 0] [info] Get global indices +[2024-11-20 21:07:44.091] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:44.091] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:44.092] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-11-20 21:07:44.093] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-11-20 21:07:44.093] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2024-11-20 21:07:44.139] [RANK: 0] [info] Column ghost size increased from 211 to 540 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -2966,7 +3002,7 @@ Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- -[2024-11-19 18:56:52.631] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2024-11-20 21:07:44.952] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -2985,7 +3021,7 @@ Number of levels of aggressive coarsening 1 Square graph aggressive coarsening Number smoothing steps 1 - Complexity: grid = 1.093 operator = 1.38036 + Complexity: grid = 1.0948 operator = 1.39028 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly @@ -3010,34 +3046,34 @@ tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd - factor fill ratio given 5., needed 1.17847 + factor fill ratio given 5., needed 1.1486 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=252, cols=252, bs=6 + rows=228, cols=228, bs=6 package used to perform factorization: petsc - total: nonzeros=57528, allocated nonzeros=57528 - using I-node routines: found 67 nodes, limit used is 5 + total: nonzeros=47304, allocated nonzeros=47304 + using I-node routines: found 58 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=252, cols=252, bs=6 - total: nonzeros=48816, allocated nonzeros=48816 + rows=228, cols=228, bs=6 + total: nonzeros=41184, allocated nonzeros=41184 total number of mallocs used during MatSetValues calls=0 - using I-node routines: found 82 nodes, limit used is 5 + using I-node routines: found 76 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=252, cols=252, bs=6 - total: nonzeros=48816, allocated nonzeros=48816 + rows=228, cols=228, bs=6 + total: nonzeros=41184, allocated nonzeros=41184 total number of mallocs used during MatSetValues calls=0 - using I-node (on process 0) routines: found 82 nodes, limit used is 5 + using I-node (on process 0) routines: found 76 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.264903, max 2.91393 - eigenvalues provided (min 0.0363342, max 2.64903) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.278267, max 3.06094 + eigenvalues provided (min 0.0250438, max 2.78267) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -3048,18 +3084,18 @@ linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=2538, cols=2538, bs=6 - total: nonzeros=427212, allocated nonzeros=427212 + rows=2616, cols=2616, bs=6 + total: nonzeros=447264, allocated nonzeros=447264 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 266 nodes, limit used is 5 + using I-node (on process 0) routines: found 274 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.257906, max 2.83696 - eigenvalues provided (min 0.0684725, max 2.57906) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.258481, max 2.84329 + eigenvalues provided (min 0.0717834, max 2.58481) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -3074,7 +3110,7 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3371 nodes, limit used is 5 + using I-node (on process 0) routines: found 3411 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes @@ -3083,47 +3119,47 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3371 nodes, limit used is 5 + using I-node (on process 0) routines: found 3411 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 5.570000 5.570000 -Build dofmap data | 2 0.010000 0.020000 +Build BoxMesh (tetrahedra) | 1 5.720000 5.720000 +Build dofmap data | 2 0.015000 0.030000 Build sparsity | 1 0.010000 0.010000 -Compute connectivity 2-0 | 1 0.000000 0.000000 +Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.110000 0.110000 -Compute graph partition (SCOTCH) | 1 5.410000 5.410000 -Compute local part of mesh dual graph (mixed) | 2 0.040000 0.080000 +Compute entities of dim = 2 | 1 0.130000 0.130000 +Compute graph partition (SCOTCH) | 1 5.290000 5.290000 +Compute local part of mesh dual graph (mixed) | 2 0.095000 0.190000 Compute local-to-local map | 1 0.000000 0.000000 -Compute non-local part of mesh dual graph | 1 0.000000 0.000000 -Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 +Compute non-local part of mesh dual graph | 1 0.090000 0.090000 +Compute-local-to-global links for global/local adjacency list | 1 0.010000 0.010000 Distribute fixed-degree adjacency list to destination ranks | 1 0.050000 0.050000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 -GPS: create_level_structure | 2 0.005000 0.010000 -Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 -Init MPI | 1 0.060000 0.060000 -Init PETSc | 1 0.000000 0.000000 -Init dofmap from element dofmap | 2 0.010000 0.020000 +GPS: create_level_structure | 6 0.003333 0.020000 +Gibbs-Poole-Stockmeyer ordering | 1 0.030000 0.030000 +Init MPI | 1 0.150000 0.150000 +Init PETSc | 1 0.010000 0.010000 +Init dofmap from element dofmap | 2 0.015000 0.030000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 1.150000 1.150000 +PETSc Krylov solver | 1 4.020000 4.020000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 5.400000 5.400000 -SparsityPattern::finalize | 1 0.010000 0.010000 -Topology: create | 1 0.040000 0.040000 -Topology: determine shared index ownership | 1 0.010000 0.010000 +SCOTCH: call SCOTCH_dgraphPart | 1 5.290000 5.290000 +SparsityPattern::finalize | 1 0.030000 0.030000 +Topology: create | 1 0.170000 0.170000 +Topology: determine shared index ownership | 1 0.070000 0.070000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 -ZZZ Assemble matrix | 1 0.320000 0.320000 -ZZZ Assemble vector | 1 0.010000 0.010000 -ZZZ Create Mesh | 1 5.580000 5.580000 +ZZZ Assemble matrix | 1 0.710000 0.710000 +ZZZ Assemble vector | 1 0.040000 0.040000 +ZZZ Create Mesh | 1 5.720000 5.720000 ZZZ Create RHS function | 1 0.020000 0.020000 ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.110000 0.110000 +ZZZ Create facets and facet->cell connectivity | 1 0.130000 0.130000 ZZZ Create forms | 1 0.000000 0.000000 -ZZZ Create near-nullspace | 1 0.010000 0.010000 +ZZZ Create near-nullspace | 1 0.040000 0.040000 ZZZ FunctionSpace | 1 0.010000 0.010000 -ZZZ Solve | 1 1.160000 1.160000 -*** Number of Krylov iterations: 18 +ZZZ Solve | 1 4.050000 4.050000 +*** Number of Krylov iterations: 19 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** @@ -3131,17 +3167,17 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt32z with 3 processes, by pbuilder1 on Tue Nov 19 18:56:53 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Wed Nov 20 21:07:48 2024 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total -Time (sec): 7.233e+00 1.000 7.233e+00 +Time (sec): 1.076e+01 1.001 1.076e+01 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 2.165e+08 1.068 2.082e+08 6.245e+08 -Flops/sec: 2.993e+07 1.068 2.878e+07 8.635e+07 -MPI Msg Count: 7.960e+02 1.040 7.757e+02 2.327e+03 -MPI Msg Len (bytes): 7.646e+06 1.447 8.246e+03 1.919e+07 -MPI Reductions: 4.760e+02 1.000 +Flops: 2.195e+08 1.019 2.173e+08 6.518e+08 +Flops/sec: 2.039e+07 1.018 2.019e+07 6.058e+07 +MPI Msg Count: 8.190e+02 1.040 7.983e+02 2.395e+03 +MPI Msg Len (bytes): 7.645e+06 1.461 8.105e+03 1.941e+07 +MPI Reductions: 4.800e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops @@ -3149,7 +3185,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 7.2328e+00 100.0% 6.2453e+08 100.0% 2.327e+03 100.0% 8.246e+03 100.0% 4.580e+02 96.2% + 0: Main Stage: 1.0760e+01 100.0% 6.5184e+08 100.0% 2.395e+03 100.0% 8.105e+03 100.0% 4.620e+02 96.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -3173,80 +3209,80 @@ --- Event Stage 0: Main Stage -BuildTwoSided 111 1.0 1.1846e-01 7.1 0.00e+00 0.0 1.9e+02 4.0e+00 1.1e+02 1 0 8 0 23 1 0 8 0 24 0 -BuildTwoSidedF 84 1.0 1.1815e-01 6.3 0.00e+00 0.0 1.1e+02 5.0e+04 8.4e+01 1 0 5 30 18 1 0 5 30 18 0 -MatMult 190 1.0 1.9770e-01 1.1 1.15e+08 1.1 1.1e+03 5.9e+03 0.0e+00 3 53 49 35 0 3 53 49 35 0 1671 -MatMultAdd 38 1.0 1.4975e-02 1.1 9.44e+06 1.1 1.5e+02 1.7e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 1830 -MatMultTranspose 38 1.0 3.3316e-02 1.1 9.45e+06 1.1 1.5e+02 1.7e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 824 -MatSolve 19 0.0 3.2367e-03 0.0 2.18e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 674 -MatLUFactorSym 1 1.0 4.1083e-03 196.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatLUFactorNum 1 1.0 1.3751e-02 5729.7 8.42e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 612 -MatScale 6 1.0 1.1749e-03 1.1 6.00e+05 1.1 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 1485 -MatResidual 38 1.0 3.6669e-02 1.1 2.23e+07 1.1 2.3e+02 5.6e+03 0.0e+00 0 10 10 7 0 0 10 10 7 0 1740 -MatAssemblyBegin 47 1.0 1.5859e-01 3.4 0.00e+00 0.0 1.1e+02 5.0e+04 2.4e+01 2 0 5 30 5 2 0 5 30 5 0 -MatAssemblyEnd 47 1.0 9.3653e-02 1.1 9.09e+04 2.0 1.8e+02 5.0e+02 9.5e+01 1 0 8 0 20 1 0 8 0 21 2 -MatGetRowIJ 1 0.0 1.2208e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCreateSubMat 2 1.0 1.0971e-02 1.0 0.00e+00 0.0 1.4e+01 3.3e+04 3.0e+01 0 0 1 2 6 0 0 1 2 7 0 -MatGetOrdering 1 0.0 2.6107e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCoarsen 2 1.0 2.4950e-03 1.0 0.00e+00 0.0 1.2e+02 8.6e+02 3.7e+01 0 0 5 1 8 0 0 5 1 8 0 -MatZeroEntries 2 1.0 1.5135e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 6 1.5 8.3573e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 -MatAXPY 4 1.0 2.1544e-02 1.0 1.18e+05 1.0 2.4e+01 4.1e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 16 -MatTranspose 9 1.0 1.5204e-02 1.2 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 0 0 5 1 6 0 0 5 1 6 0 -MatMatMultSym 6 1.0 9.6959e-02 1.0 0.00e+00 0.0 6.0e+01 1.1e+04 2.0e+01 1 0 3 3 4 1 0 3 3 4 0 -MatMatMultNum 2 1.0 2.9872e-02 1.0 7.05e+06 1.1 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 674 -MatPtAPSymbolic 2 1.0 2.5218e-01 1.0 0.00e+00 0.0 7.2e+01 5.0e+04 1.4e+01 3 0 3 19 3 3 0 3 19 3 0 -MatPtAPNumeric 2 1.0 3.2377e-01 1.0 6.25e+07 1.2 4.8e+01 6.4e+04 1.2e+01 4 27 2 16 3 4 27 2 16 3 528 -MatTrnMatMultSym 1 1.0 6.6873e-02 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 -MatGetLocalMat 7 1.0 4.7383e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatGetBrAoCol 6 1.0 6.3847e-03 1.2 0.00e+00 0.0 8.4e+01 4.6e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 -VecMDot 20 1.0 1.3839e-02 2.0 1.22e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 259 -VecTDot 38 1.0 3.4315e-03 2.3 7.71e+05 1.0 0.0e+00 0.0e+00 3.8e+01 0 0 0 0 8 0 0 0 0 8 664 -VecNorm 41 1.0 6.8693e-03 4.7 6.29e+05 1.0 0.0e+00 0.0e+00 4.1e+01 0 0 0 0 9 0 0 0 0 9 270 -VecScale 22 1.0 1.2100e-04 1.0 1.22e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2958 -VecCopy 118 1.0 8.5889e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 134 1.0 4.5983e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 38 1.0 9.5189e-04 1.2 7.53e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2338 -VecAYPX 245 1.0 3.6146e-03 1.1 2.03e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1650 -VecAXPBYCZ 76 1.0 1.8534e-03 1.2 2.11e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3336 -VecMAXPY 22 1.0 8.7981e-04 1.1 1.44e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4808 -VecAssemblyBegin 61 1.0 2.9976e-03 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 13 0 -VecAssemblyEnd 61 1.0 1.0735e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecPointwiseMult 174 1.0 2.9200e-03 1.1 9.64e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 969 -VecScatterBegin 330 1.0 7.4582e-03 1.2 0.00e+00 0.0 1.7e+03 4.6e+03 0.0e+00 0 0 74 41 0 0 0 74 41 0 0 -VecScatterEnd 330 1.0 1.8254e-02 1.6 1.25e+04 1.4 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2 -VecNormalize 22 1.0 1.1214e-03 1.4 3.66e+05 1.1 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 957 -SFSetGraph 27 1.0 2.7947e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 27 1.0 1.9984e-03 1.1 0.00e+00 0.0 2.7e+02 4.9e+02 2.7e+01 0 0 11 1 6 0 0 11 1 6 0 -SFBcastBegin 9 1.0 1.7711e-04 1.1 0.00e+00 0.0 5.4e+01 1.5e+03 0.0e+00 0 0 2 0 0 0 0 2 0 0 0 -SFBcastEnd 9 1.0 8.1153e-05 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFReduceBegin 3 1.0 8.8236e-05 1.2 0.00e+00 0.0 1.5e+01 6.6e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 -SFReduceEnd 3 1.0 4.5677e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFPack 342 1.0 2.0229e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 342 1.0 5.8490e-04 1.2 1.25e+04 1.4 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 54 -KSPSetUp 7 1.0 3.6743e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 2.5892e-01 1.0 1.31e+08 1.1 1.3e+03 4.9e+03 7.6e+01 4 61 57 34 16 4 61 57 34 17 1479 -KSPGMRESOrthog 20 1.0 1.4885e-02 1.9 2.44e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 481 -PCSetUp_GAMG+ 1 1.0 8.8362e-01 1.0 8.50e+07 1.2 9.4e+02 1.2e+04 3.3e+02 12 38 40 60 69 12 38 40 60 72 267 - PCGAMGCreateG 2 1.0 5.6188e-02 1.0 1.55e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 8 - GAMG Coarsen 4 1.0 7.2623e-02 1.0 0.00e+00 0.0 1.9e+02 8.1e+03 5.4e+01 1 0 8 8 11 1 0 8 8 12 0 - GAMG MIS/Agg 2 1.0 6.9783e-02 1.0 0.00e+00 0.0 1.6e+02 8.7e+03 5.0e+01 1 0 7 7 11 1 0 7 7 11 0 - PCGAMGProl 2 1.0 3.3024e-02 1.0 0.00e+00 0.0 2.6e+02 3.1e+03 7.6e+01 0 0 11 4 16 0 0 11 4 17 0 - GAMG Prol-col 2 1.0 9.6950e-03 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 10 3 12 0 0 10 3 12 0 - GAMG Prol-lift 2 1.0 2.2798e-02 1.0 0.00e+00 0.0 3.6e+01 6.2e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 - PCGAMGOptProl 2 1.0 1.3224e-01 1.0 2.24e+07 1.1 1.9e+02 8.9e+03 6.6e+01 2 10 8 9 14 2 10 8 9 14 487 - GAMG smooth 2 1.0 9.0612e-02 1.0 7.62e+06 1.1 7.2e+01 1.4e+04 2.4e+01 1 3 3 5 5 1 3 3 5 5 240 - PCGAMGCreateL 2 1.0 5.8770e-01 1.0 6.25e+07 1.2 1.5e+02 4.8e+04 8.1e+01 8 27 6 37 17 8 27 6 37 18 291 - GAMG PtAP 2 1.0 5.7567e-01 1.0 6.25e+07 1.2 1.2e+02 5.6e+04 2.6e+01 8 27 5 35 5 8 27 5 35 6 297 - GAMG Reduce 1 1.0 1.2120e-02 1.0 0.00e+00 0.0 2.9e+01 1.7e+04 5.5e+01 0 0 1 3 12 0 0 1 3 12 0 -PCGAMG Squ l00 1 1.0 6.6877e-02 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 -PCGAMG Gal l00 1 1.0 3.9778e-01 1.0 3.88e+07 1.0 6.0e+01 7.9e+04 1.3e+01 5 18 3 25 3 5 18 3 25 3 290 -PCGAMG Opt l00 1 1.0 6.2838e-02 1.0 5.10e+06 1.0 3.6e+01 2.2e+04 1.1e+01 1 2 2 4 2 1 2 2 4 2 239 -PCGAMG Gal l01 1 1.0 1.7789e-01 1.0 2.38e+07 1.8 6.0e+01 3.2e+04 1.3e+01 2 9 3 10 3 2 9 3 10 3 311 -PCGAMG Opt l01 1 1.0 1.6278e-02 1.0 1.95e+06 1.3 3.6e+01 6.8e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 315 -PCSetUp 2 1.0 9.0190e-01 1.0 8.50e+07 1.1 9.4e+02 1.2e+04 3.3e+02 12 39 40 60 69 12 39 40 60 72 271 -PCSetUpOnBlocks 19 1.0 1.8352e-02 72.0 8.42e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 459 -PCApply 19 1.0 2.2966e-01 1.0 1.14e+08 1.1 1.2e+03 4.6e+03 1.9e+01 3 53 52 29 4 3 53 52 29 4 1445 +BuildTwoSided 111 1.0 5.6833e-01 2.1 0.00e+00 0.0 1.9e+02 4.0e+00 1.1e+02 4 0 8 0 23 4 0 8 0 24 0 +BuildTwoSidedF 84 1.0 5.4511e-01 2.5 0.00e+00 0.0 1.1e+02 5.0e+04 8.4e+01 4 0 5 29 18 4 0 5 29 18 0 +MatMult 199 1.0 7.9089e-01 1.1 1.19e+08 1.0 1.2e+03 5.9e+03 0.0e+00 7 54 50 36 0 7 54 50 36 0 442 +MatMultAdd 40 1.0 1.5478e-01 2.5 9.94e+06 1.0 1.6e+02 1.6e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 190 +MatMultTranspose 40 1.0 1.4051e-01 1.1 9.95e+06 1.0 1.6e+02 1.6e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 210 +MatSolve 20 0.0 2.7928e-03 0.0 1.89e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 676 +MatLUFactorSym 1 1.0 3.3685e-03 80.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatLUFactorNum 1 1.0 1.2489e-02 2124.3 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1.4 8.19e+05 1.1 0.0e+00 0.0e+00 4.0e+01 1 0 0 0 8 1 0 0 0 9 18 +VecNorm 42 1.0 2.4757e-01 2.5 6.52e+05 1.1 0.0e+00 0.0e+00 4.2e+01 1 0 0 0 9 1 0 0 0 9 8 +VecScale 22 1.0 2.6280e-04 1.1 1.22e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1365 +VecCopy 124 1.0 4.8254e-03 4.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 141 1.0 9.5194e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 40 1.0 7.2861e-03 4.0 8.00e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 322 +VecAYPX 258 1.0 6.8940e-03 1.3 2.14e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 914 +VecAXPBYCZ 80 1.0 3.1335e-03 1.1 2.21e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2082 +VecMAXPY 22 1.0 3.2701e-03 1.1 1.44e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1297 +VecAssemblyBegin 61 1.0 2.0150e-02 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 12 0 0 0 0 13 0 +VecAssemblyEnd 61 1.0 2.4339e-02 114.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecPointwiseMult 182 1.0 1.3674e-02 3.3 1.01e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 217 +VecScatterBegin 343 1.0 1.4501e-02 1.2 0.00e+00 0.0 1.8e+03 4.6e+03 0.0e+00 0 0 74 43 0 0 0 74 43 0 0 +VecScatterEnd 343 1.0 5.3075e-01 1.2 1.32e+04 1.6 0.0e+00 0.0e+00 0.0e+00 5 0 0 0 0 5 0 0 0 0 0 +VecNormalize 22 1.0 1.2072e-01 3.0 3.65e+05 1.0 0.0e+00 0.0e+00 2.2e+01 1 0 0 0 5 1 0 0 0 5 9 +SFSetGraph 27 1.0 9.6719e-04 3.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 27 1.0 5.6193e-02 1.3 0.00e+00 0.0 2.7e+02 4.8e+02 2.7e+01 0 0 11 1 6 0 0 11 1 6 0 +SFBcastBegin 9 1.0 4.7678e-04 1.5 0.00e+00 0.0 5.4e+01 1.5e+03 0.0e+00 0 0 2 0 0 0 0 2 0 0 0 +SFBcastEnd 9 1.0 4.5977e-03 20.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFReduceBegin 3 1.0 1.9412e-04 1.7 0.00e+00 0.0 1.5e+01 6.6e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 +SFReduceEnd 3 1.0 3.4231e-04 11.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFPack 355 1.0 3.3972e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 355 1.0 1.6127e-03 2.6 1.32e+04 1.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 20 +KSPSetUp 7 1.0 5.1429e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 1.2388e+00 1.0 1.38e+08 1.0 1.4e+03 4.9e+03 8.0e+01 12 62 58 35 17 12 62 58 35 17 326 +KSPGMRESOrthog 20 1.0 1.5141e-01 1.6 2.43e+06 1.0 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 4 1 1 0 0 4 47 +PCSetUp_GAMG+ 1 1.0 2.7752e+00 1.0 8.39e+07 1.1 9.4e+02 1.2e+04 3.3e+02 26 37 39 59 69 26 37 39 59 71 87 + PCGAMGCreateG 2 1.0 3.0814e-01 1.0 1.54e+05 1.0 1.4e+02 1.7e+03 5.0e+01 3 0 6 1 10 3 0 6 1 11 1 + GAMG Coarsen 4 1.0 1.8500e-01 1.0 0.00e+00 0.0 1.9e+02 8.1e+03 5.4e+01 2 0 8 8 11 2 0 8 8 12 0 + GAMG MIS/Agg 2 1.0 1.8007e-01 1.0 0.00e+00 0.0 1.6e+02 8.8e+03 5.0e+01 2 0 7 7 10 2 0 7 7 11 0 + PCGAMGProl 2 1.0 2.1335e-01 1.0 0.00e+00 0.0 2.6e+02 3.2e+03 7.6e+01 2 0 11 4 16 2 0 11 4 16 0 + GAMG Prol-col 2 1.0 5.6106e-02 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 1 0 9 3 12 1 0 9 3 12 0 + GAMG Prol-lift 2 1.0 1.4879e-01 1.1 0.00e+00 0.0 3.6e+01 6.7e+03 1.2e+01 1 0 2 1 2 1 0 2 1 3 0 + PCGAMGOptProl 2 1.0 6.3385e-01 1.0 2.21e+07 1.0 1.9e+02 8.9e+03 6.6e+01 6 10 8 9 14 6 10 8 9 14 103 + GAMG smooth 2 1.0 3.3034e-01 1.0 7.53e+06 1.1 7.2e+01 1.4e+04 2.4e+01 3 3 3 5 5 3 3 3 5 5 67 + PCGAMGCreateL 2 1.0 1.4467e+00 1.0 6.17e+07 1.1 1.5e+02 4.7e+04 8.1e+01 13 27 6 36 17 13 27 6 36 18 122 + GAMG PtAP 2 1.0 1.3728e+00 1.0 6.17e+07 1.1 1.2e+02 5.6e+04 2.6e+01 13 27 5 34 5 13 27 5 34 6 128 + GAMG Reduce 1 1.0 7.3893e-02 1.0 0.00e+00 0.0 2.9e+01 1.3e+04 5.5e+01 1 0 1 2 11 1 0 1 2 12 0 +PCGAMG Squ l00 1 1.0 1.6434e-01 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 2 0 2 7 3 2 0 2 7 3 0 +PCGAMG Gal l00 1 1.0 9.5963e-01 1.0 4.00e+07 1.0 6.0e+01 7.8e+04 1.3e+01 9 18 3 24 3 9 18 3 24 3 123 +PCGAMG Opt l00 1 1.0 2.2572e-01 1.0 5.10e+06 1.1 3.6e+01 2.2e+04 1.1e+01 2 2 2 4 2 2 2 2 4 2 67 +PCGAMG Gal l01 1 1.0 4.1339e-01 1.0 2.28e+07 1.5 6.0e+01 3.4e+04 1.3e+01 4 9 3 10 3 4 9 3 10 3 140 +PCGAMG Opt l01 1 1.0 6.6849e-02 1.0 2.13e+06 1.4 3.6e+01 7.0e+03 1.1e+01 1 1 2 1 2 1 1 2 1 2 80 +PCSetUp 2 1.0 2.7915e+00 1.0 8.39e+07 1.0 9.4e+02 1.2e+04 3.3e+02 26 38 39 59 69 26 38 39 59 71 89 +PCSetUpOnBlocks 20 1.0 1.6574e-02 40.5 6.23e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 376 +PCApply 20 1.0 9.8087e-01 1.0 1.19e+08 1.0 1.3e+03 4.6e+03 2.0e+01 9 54 53 30 4 9 54 53 30 4 357 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -3269,9 +3305,9 @@ Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== -Average time to get PetscTime(): 9.2e-08 -Average time for MPI_Barrier(): 4.9598e-06 -Average time for zero size MPI_Send(): 4.05333e-06 +Average time to get PetscTime(): 1.5e-07 +Average time for MPI_Barrier(): 4.6356e-06 +Average time for zero size MPI_Send(): 4.733e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) @@ -3335,67 +3371,67 @@ Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== elasticity strong scaling (3 processes with ndofs=30000) ==== -[2024-11-19 18:56:54.001] [RANK: 0] [info] Using partitioner with 69312 cell data -[2024-11-19 18:56:54.003] [RANK: 0] [info] Compute partition of cells across ranks -[2024-11-19 18:56:54.003] [RANK: 0] [info] Building mesh dual graph -[2024-11-19 18:56:54.003] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-19 18:56:54.042] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-11-19 18:56:54.043] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:54.043] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:54.043] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-11-19 18:56:54.045] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) -[2024-11-19 18:56:54.045] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-11-19 18:56:59.462] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-19 18:56:59.476] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-19 18:56:59.517] [RANK: 0] [info] Extract basic topology: 68336->68336 -[2024-11-19 18:56:59.517] [RANK: 0] [info] Build local dual graph -[2024-11-19 18:56:59.517] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-19 18:56:59.574] [RANK: 0] [info] GPS pseudo-diameter:(120) 1250-16527 -[2024-11-19 18:56:59.583] [RANK: 0] [info] Create topology (single cell type) -[2024-11-19 18:56:59.583] [RANK: 0] [info] Create topology (generalised) -[2024-11-19 18:56:59.591] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-19 18:56:59.596] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-19 18:56:59.603] [RANK: 0] [info] Compute ghost indices -[2024-11-19 18:56:59.603] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-11-19 18:56:59.603] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-11-19 18:56:59.605] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-19 18:56:59.606] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-19 18:56:59.613] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:59.614] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:59.614] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:59.614] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:59.619] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-19 18:56:59.619] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-19 18:56:59.619] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-11-19 18:56:59.619] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:59.619] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:59.619] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-11-19 18:56:59.620] [RANK: 0] [info] Checking required entities per dimension -[2024-11-19 18:56:59.620] [RANK: 0] [info] Cell type: 0 dofmap: 17084x4 -[2024-11-19 18:56:59.624] [RANK: 0] [info] Global index computation -[2024-11-19 18:56:59.625] [RANK: 0] [info] Got 1 index_maps -[2024-11-19 18:56:59.625] [RANK: 0] [info] Get global indices -[2024-11-19 18:56:59.625] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:59.625] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:49.395] [RANK: 0] [info] Using partitioner with 69312 cell data +[2024-11-20 21:07:49.400] [RANK: 0] [info] Compute partition of cells across ranks +[2024-11-20 21:07:49.400] [RANK: 0] [info] Building mesh dual graph +[2024-11-20 21:07:49.400] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-11-20 21:07:49.442] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2024-11-20 21:07:49.505] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:49.505] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:49.505] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2024-11-20 21:07:49.508] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) +[2024-11-20 21:07:49.508] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2024-11-20 21:07:55.662] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-11-20 21:07:55.692] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-11-20 21:07:55.757] [RANK: 0] [info] Extract basic topology: 68888->68888 +[2024-11-20 21:07:55.758] [RANK: 0] [info] Build local dual graph +[2024-11-20 21:07:55.758] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-11-20 21:07:55.837] [RANK: 0] [info] GPS pseudo-diameter:(120) 1246-16642 +[2024-11-20 21:07:55.847] [RANK: 0] [info] Create topology (single cell type) +[2024-11-20 21:07:55.847] [RANK: 0] [info] Create topology (generalised) +[2024-11-20 21:07:55.854] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-11-20 21:07:55.855] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-11-20 21:07:55.870] [RANK: 0] [info] Compute ghost indices +[2024-11-20 21:07:55.870] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2024-11-20 21:07:55.870] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2024-11-20 21:07:55.881] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-11-20 21:07:55.881] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-11-20 21:07:55.901] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:55.901] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:55.901] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:55.901] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:55.909] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-11-20 21:07:55.909] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-11-20 21:07:55.909] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2024-11-20 21:07:55.910] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:55.910] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:55.910] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2024-11-20 21:07:55.910] [RANK: 0] [info] Checking required entities per dimension +[2024-11-20 21:07:55.910] [RANK: 0] [info] Cell type: 0 dofmap: 17222x4 +[2024-11-20 21:07:55.929] [RANK: 0] [info] Global index computation +[2024-11-20 21:07:55.930] [RANK: 0] [info] Got 1 index_maps +[2024-11-20 21:07:55.930] [RANK: 0] [info] Get global indices +[2024-11-20 21:07:55.930] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:55.931] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times -[2024-11-19 18:56:59.627] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-11-19 18:56:59.664] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:59.668] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:59.738] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:59.738] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:59.739] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-19 18:56:59.739] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-11-19 18:56:59.741] [RANK: 0] [info] Checking required entities per dimension -[2024-11-19 18:56:59.741] [RANK: 0] [info] Cell type: 0 dofmap: 17084x4 -[2024-11-19 18:56:59.746] [RANK: 0] [info] Global index computation -[2024-11-19 18:56:59.746] [RANK: 0] [info] Got 1 index_maps -[2024-11-19 18:56:59.746] [RANK: 0] [info] Get global indices -[2024-11-19 18:56:59.747] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:56:59.747] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:56:59.747] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-19 18:56:59.748] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-19 18:56:59.748] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-11-19 18:56:59.822] [RANK: 0] [info] Column ghost size increased from 215 to 555 +[2024-11-20 21:07:55.933] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2024-11-20 21:07:56.041] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:56.041] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:56.138] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:56.138] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:56.140] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-11-20 21:07:56.140] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2024-11-20 21:07:56.143] [RANK: 0] [info] Checking required entities per dimension +[2024-11-20 21:07:56.143] [RANK: 0] [info] Cell type: 0 dofmap: 17222x4 +[2024-11-20 21:07:56.149] [RANK: 0] [info] Global index computation +[2024-11-20 21:07:56.149] [RANK: 0] [info] Got 1 index_maps +[2024-11-20 21:07:56.150] [RANK: 0] [info] Get global indices +[2024-11-20 21:07:56.162] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:07:56.162] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:07:56.163] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-11-20 21:07:56.163] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-11-20 21:07:56.163] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2024-11-20 21:07:56.238] [RANK: 0] [info] Column ghost size increased from 209 to 541 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -3409,7 +3445,7 @@ Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- -[2024-11-19 18:57:00.306] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2024-11-20 21:07:57.549] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -3428,7 +3464,7 @@ Number of levels of aggressive coarsening 1 Square graph aggressive coarsening Number smoothing steps 1 - Complexity: grid = 1.0978 operator = 1.41137 + Complexity: grid = 1.0954 operator = 1.39175 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly @@ -3453,34 +3489,34 @@ tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd - factor fill ratio given 5., needed 1.15921 + factor fill ratio given 5., needed 1.12544 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=264, cols=264, bs=6 + rows=258, cols=258, bs=6 package used to perform factorization: petsc - total: nonzeros=63432, allocated nonzeros=63432 - using I-node routines: found 63 nodes, limit used is 5 + total: nonzeros=58140, allocated nonzeros=58140 + using I-node routines: found 76 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=264, cols=264, bs=6 - total: nonzeros=54720, allocated nonzeros=54720 + rows=258, cols=258, bs=6 + total: nonzeros=51660, allocated nonzeros=51660 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 86 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=264, cols=264, bs=6 - total: nonzeros=54720, allocated nonzeros=54720 + rows=258, cols=258, bs=6 + total: nonzeros=51660, allocated nonzeros=51660 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 86 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.274167, max 3.01584 - eigenvalues provided (min 0.0374422, max 2.74167) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.261068, max 2.87175 + eigenvalues provided (min 0.0340542, max 2.61068) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -3491,18 +3527,18 @@ linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=2670, cols=2670, bs=6 - total: nonzeros=460116, allocated nonzeros=460116 + rows=2604, cols=2604, bs=6 + total: nonzeros=438624, allocated nonzeros=438624 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 280 nodes, limit used is 5 + using I-node (on process 0) routines: found 262 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.258414, max 2.84255 - eigenvalues provided (min 0.0770223, max 2.58414) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.258268, max 2.84094 + eigenvalues provided (min 0.0742902, max 2.58268) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -3517,7 +3553,7 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3354 nodes, limit used is 5 + using I-node (on process 0) routines: found 3386 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes @@ -3526,46 +3562,46 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3354 nodes, limit used is 5 + using I-node (on process 0) routines: found 3386 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 5.620000 5.620000 -Build dofmap data | 2 0.000000 0.000000 -Build sparsity | 1 0.010000 0.010000 +Build BoxMesh (tetrahedra) | 1 6.540000 6.540000 +Build dofmap data | 2 0.020000 0.040000 +Build sparsity | 1 0.020000 0.020000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.120000 0.120000 -Compute graph partition (SCOTCH) | 1 5.420000 5.420000 -Compute local part of mesh dual graph (mixed) | 2 0.050000 0.100000 +Compute entities of dim = 2 | 1 0.210000 0.210000 +Compute graph partition (SCOTCH) | 1 6.150000 6.150000 +Compute local part of mesh dual graph (mixed) | 2 0.075000 0.150000 Compute local-to-local map | 1 0.000000 0.000000 -Compute non-local part of mesh dual graph | 1 0.000000 0.000000 +Compute non-local part of mesh dual graph | 1 0.060000 0.060000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.070000 0.070000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.100000 0.100000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 -GPS: create_level_structure | 2 0.000000 0.000000 -Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 -Init MPI | 1 0.060000 0.060000 -Init PETSc | 1 0.010000 0.010000 -Init dofmap from element dofmap | 2 0.000000 0.000000 +GPS: create_level_structure | 2 0.005000 0.010000 +Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 +Init MPI | 1 0.120000 0.120000 +Init PETSc | 1 0.030000 0.030000 +Init dofmap from element dofmap | 2 0.015000 0.030000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 2.160000 2.160000 +PETSc Krylov solver | 1 3.430000 3.430000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 5.420000 5.420000 -SparsityPattern::finalize | 1 0.040000 0.040000 -Topology: create | 1 0.080000 0.080000 -Topology: determine shared index ownership | 1 0.070000 0.070000 +SCOTCH: call SCOTCH_dgraphPart | 1 6.140000 6.140000 +SparsityPattern::finalize | 1 0.030000 0.030000 +Topology: create | 1 0.130000 0.130000 +Topology: determine shared index ownership | 1 0.080000 0.080000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 -ZZZ Assemble matrix | 1 0.410000 0.410000 -ZZZ Assemble vector | 1 0.020000 0.020000 -ZZZ Create Mesh | 1 5.630000 5.630000 +ZZZ Assemble matrix | 1 0.900000 0.900000 +ZZZ Assemble vector | 1 0.030000 0.030000 +ZZZ Create Mesh | 1 6.550000 6.550000 ZZZ Create RHS function | 1 0.030000 0.030000 ZZZ Create boundary conditions | 1 0.010000 0.010000 -ZZZ Create facets and facet->cell connectivity | 1 0.120000 0.120000 +ZZZ Create facets and facet->cell connectivity | 1 0.210000 0.210000 ZZZ Create forms | 1 0.000000 0.000000 -ZZZ Create near-nullspace | 1 0.030000 0.030000 -ZZZ FunctionSpace | 1 0.000000 0.000000 -ZZZ Solve | 1 2.160000 2.160000 +ZZZ Create near-nullspace | 1 0.330000 0.330000 +ZZZ FunctionSpace | 1 0.020000 0.020000 +ZZZ Solve | 1 3.440000 3.440000 *** Number of Krylov iterations: 18 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** @@ -3574,17 +3610,17 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt32z with 3 processes, by pbuilder1 on Tue Nov 19 18:57:02 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Wed Nov 20 21:08:00 2024 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total -Time (sec): 8.475e+00 1.000 8.475e+00 +Time (sec): 1.161e+01 1.000 1.161e+01 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 2.278e+08 1.112 2.173e+08 6.520e+08 -Flops/sec: 2.688e+07 1.112 2.564e+07 7.693e+07 -MPI Msg Count: 7.960e+02 1.043 7.750e+02 2.325e+03 -MPI Msg Len (bytes): 7.730e+06 1.389 8.377e+03 1.948e+07 -MPI Reductions: 4.770e+02 1.000 +Flops: 2.223e+08 1.086 2.121e+08 6.362e+08 +Flops/sec: 1.914e+07 1.085 1.827e+07 5.480e+07 +MPI Msg Count: 7.960e+02 1.040 7.757e+02 2.327e+03 +MPI Msg Len (bytes): 7.469e+06 1.420 8.148e+03 1.896e+07 +MPI Reductions: 4.760e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops @@ -3592,7 +3628,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 8.4747e+00 100.0% 6.5197e+08 100.0% 2.325e+03 100.0% 8.377e+03 100.0% 4.590e+02 96.2% + 0: Main Stage: 1.1610e+01 100.0% 6.3623e+08 100.0% 2.327e+03 100.0% 8.148e+03 100.0% 4.580e+02 96.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -3616,80 +3652,80 @@ --- Event Stage 0: Main Stage -BuildTwoSided 111 1.0 2.4954e-01 1.7 0.00e+00 0.0 1.9e+02 4.0e+00 1.1e+02 3 0 8 0 23 3 0 8 0 24 0 -BuildTwoSidedF 84 1.0 2.0968e-01 2.1 0.00e+00 0.0 1.1e+02 5.5e+04 8.4e+01 2 0 5 30 18 2 0 5 30 18 0 -MatMult 190 1.0 3.8985e-01 1.2 1.19e+08 1.1 1.1e+03 5.7e+03 0.0e+00 4 52 49 34 0 4 52 49 34 0 862 -MatMultAdd 38 1.0 5.6270e-02 1.2 9.73e+06 1.1 1.5e+02 1.7e+03 0.0e+00 1 4 7 1 0 1 4 7 1 0 505 -MatMultTranspose 38 1.0 1.1006e-01 1.3 9.74e+06 1.1 1.5e+02 1.7e+03 0.0e+00 1 4 7 1 0 1 4 7 1 0 258 -MatSolve 19 0.0 3.2135e-03 0.0 2.41e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 749 -MatLUFactorSym 1 1.0 4.5922e-03 197.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatLUFactorNum 1 1.0 1.4744e-02 6042.7 1.00e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 679 -MatScale 6 1.0 1.3971e-03 1.3 6.16e+05 1.1 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 1287 -MatResidual 38 1.0 7.5959e-02 1.4 2.31e+07 1.1 2.3e+02 5.5e+03 0.0e+00 1 10 10 6 0 1 10 10 6 0 856 -MatAssemblyBegin 47 1.0 2.5115e-01 1.8 0.00e+00 0.0 1.1e+02 5.5e+04 2.4e+01 2 0 5 30 5 2 0 5 30 5 0 -MatAssemblyEnd 47 1.0 2.3099e-01 1.1 1.16e+05 1.9 1.8e+02 4.9e+02 9.5e+01 3 0 8 0 20 3 0 8 0 21 1 -MatGetRowIJ 1 0.0 1.3460e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCreateSubMat 2 1.0 2.4179e-02 1.0 0.00e+00 0.0 1.4e+01 3.1e+04 3.0e+01 0 0 1 2 6 0 0 1 2 7 0 -MatGetOrdering 1 0.0 2.9563e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCoarsen 2 1.0 2.5836e-03 1.0 0.00e+00 0.0 1.2e+02 8.1e+02 3.8e+01 0 0 5 1 8 0 0 5 1 8 0 -MatZeroEntries 2 1.0 3.0023e-04 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 6 1.5 8.9169e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 -MatAXPY 4 1.0 2.2112e-02 1.0 1.18e+05 1.0 2.4e+01 4.0e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 16 -MatTranspose 9 1.0 7.9718e-02 1.0 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 1 0 5 1 6 1 0 5 1 6 0 -MatMatMultSym 6 1.0 1.5288e-01 1.3 0.00e+00 0.0 6.0e+01 1.1e+04 2.0e+01 2 0 3 3 4 2 0 3 3 4 0 -MatMatMultNum 2 1.0 4.0923e-02 1.0 7.29e+06 1.1 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 502 -MatPtAPSymbolic 2 1.0 4.6285e-01 1.0 0.00e+00 0.0 7.2e+01 5.4e+04 1.4e+01 5 0 3 20 3 5 0 3 20 3 0 -MatPtAPNumeric 2 1.0 5.0768e-01 1.0 6.97e+07 1.2 4.8e+01 7.1e+04 1.2e+01 6 29 2 17 3 6 29 2 17 3 371 -MatTrnMatMultSym 1 1.0 5.9227e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 6 3 1 0 2 6 3 0 -MatGetLocalMat 7 1.0 4.3813e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatGetBrAoCol 6 1.0 1.0069e-02 1.1 0.00e+00 0.0 8.4e+01 4.8e+04 0.0e+00 0 0 4 21 0 0 0 4 21 0 0 -VecMDot 20 1.0 2.3546e-02 2.1 1.21e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 153 -VecTDot 38 1.0 8.6802e-02 1.7 7.65e+05 1.0 0.0e+00 0.0e+00 3.8e+01 1 0 0 0 8 1 0 0 0 8 26 -VecNorm 41 1.0 4.9579e-02 1.3 6.22e+05 1.0 0.0e+00 0.0e+00 4.1e+01 0 0 0 0 9 0 0 0 0 9 37 -VecScale 22 1.0 1.2368e-04 1.0 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2906 -VecCopy 118 1.0 8.3333e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 134 1.0 4.0691e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 38 1.0 1.0122e-03 1.3 7.46e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2199 -VecAYPX 245 1.0 3.4142e-03 1.1 2.01e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1753 -VecAXPBYCZ 76 1.0 1.6164e-03 1.1 2.09e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3840 -VecMAXPY 22 1.0 7.9753e-04 1.1 1.43e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 5325 -VecAssemblyBegin 61 1.0 5.7072e-03 2.8 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 13 0 -VecAssemblyEnd 61 1.0 1.0543e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecPointwiseMult 174 1.0 2.8453e-03 1.1 9.56e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 999 -VecScatterBegin 330 1.0 7.5569e-03 1.1 0.00e+00 0.0 1.7e+03 4.5e+03 0.0e+00 0 0 74 40 0 0 0 74 40 0 0 -VecScatterEnd 330 1.0 2.6470e-01 1.5 1.35e+04 1.9 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0 -VecNormalize 22 1.0 4.9822e-03 4.6 3.63e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 216 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GAMG smooth 2 1.0 3.0401e-01 1.0 7.77e+06 1.1 7.2e+01 1.4e+04 2.4e+01 3 3 3 5 5 3 3 3 5 5 72 + PCGAMGCreateL 2 1.0 1.0320e+00 1.0 6.61e+07 1.2 1.5e+02 4.9e+04 8.1e+01 9 28 6 38 17 9 28 6 38 18 174 + GAMG PtAP 2 1.0 9.9332e-01 1.0 6.61e+07 1.2 1.2e+02 5.6e+04 2.6e+01 9 28 5 36 5 9 28 5 36 6 181 + GAMG Reduce 1 1.0 3.8816e-02 1.0 0.00e+00 0.0 2.9e+01 1.8e+04 5.5e+01 0 0 1 3 12 0 0 1 3 12 0 +PCGAMG Squ l00 1 1.0 2.8383e-01 1.1 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 2 0 2 7 3 2 0 2 7 3 0 +PCGAMG Gal l00 1 1.0 5.4661e-01 1.0 3.96e+07 1.0 6.0e+01 7.7e+04 1.3e+01 5 18 3 25 3 5 18 3 25 3 214 +PCGAMG Opt l00 1 1.0 1.8189e-01 1.0 5.05e+06 1.0 3.6e+01 2.1e+04 1.1e+01 2 2 2 4 2 2 2 2 4 2 83 +PCGAMG Gal l01 1 1.0 4.4671e-01 1.0 2.65e+07 1.7 6.0e+01 3.5e+04 1.3e+01 4 10 3 11 3 4 10 3 11 3 139 +PCGAMG Opt l01 1 1.0 7.7963e-02 1.1 2.15e+06 1.5 3.6e+01 6.8e+03 1.1e+01 1 1 2 1 2 1 1 2 1 2 68 +PCSetUp 2 1.0 2.1238e+00 1.0 8.90e+07 1.1 9.4e+02 1.2e+04 3.3e+02 18 40 40 61 69 18 40 40 61 72 119 +PCSetUpOnBlocks 19 1.0 2.1910e-02 63.8 8.30e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 379 +PCApply 19 1.0 9.5419e-01 1.1 1.15e+08 1.1 1.2e+03 4.5e+03 1.9e+01 8 53 52 29 4 8 53 52 29 4 351 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -3712,9 +3748,9 @@ Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== -Average time to get PetscTime(): 9.2e-08 -Average time for MPI_Barrier(): 4.6878e-06 -Average time for zero size MPI_Send(): 4.413e-06 +Average time to get PetscTime(): 1.68e-07 +Average time for MPI_Barrier(): 4.4116e-06 +Average time for zero size MPI_Send(): 4.873e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) @@ -3778,69 +3814,69 @@ Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== poisson weak scaling (3 processes with ndofs=10000) ==== -[2024-11-19 18:57:02.890] [RANK: 0] [info] Using partitioner with 216000 cell data -[2024-11-19 18:57:02.895] [RANK: 0] [info] Compute partition of cells across ranks -[2024-11-19 18:57:02.895] [RANK: 0] [info] Building mesh dual graph -[2024-11-19 18:57:02.895] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-19 18:57:03.011] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-11-19 18:57:03.120] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:03.120] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:03.120] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-11-19 18:57:03.125] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) -[2024-11-19 18:57:03.125] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-11-19 18:57:12.023] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-19 18:57:12.044] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-19 18:57:12.106] [RANK: 0] [info] Extract basic topology: 212896->212896 -[2024-11-19 18:57:12.106] [RANK: 0] [info] Build local dual graph -[2024-11-19 18:57:12.106] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-19 18:57:12.216] [RANK: 0] [info] GPS pseudo-diameter:(165) 1788-51746 -[2024-11-19 18:57:12.231] [RANK: 0] [info] Create topology (single cell type) -[2024-11-19 18:57:12.231] [RANK: 0] [info] Create topology (generalised) -[2024-11-19 18:57:12.448] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-19 18:57:12.468] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-19 18:57:12.556] [RANK: 0] [info] Compute ghost indices -[2024-11-19 18:57:12.556] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-11-19 18:57:12.556] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-11-19 18:57:12.561] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-19 18:57:12.571] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-19 18:57:12.605] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:12.648] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:12.656] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:12.688] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:12.752] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-19 18:57:12.768] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-19 18:57:12.768] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-11-19 18:57:12.785] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:12.816] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:12.816] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-11-19 18:57:12.829] [RANK: 0] [info] Checking required entities per dimension -[2024-11-19 18:57:12.829] [RANK: 0] [info] Cell type: 0 dofmap: 53224x4 -[2024-11-19 18:57:12.855] [RANK: 0] [info] Global index computation -[2024-11-19 18:57:12.855] [RANK: 0] [info] Got 1 index_maps -[2024-11-19 18:57:12.856] [RANK: 0] [info] Get global indices -[2024-11-19 18:57:12.857] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:12.857] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:01.414] [RANK: 0] [info] Using partitioner with 216000 cell data +[2024-11-20 21:08:01.417] [RANK: 0] [info] Compute partition of cells across ranks +[2024-11-20 21:08:01.417] [RANK: 0] [info] Building mesh dual graph +[2024-11-20 21:08:01.417] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-11-20 21:08:01.614] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2024-11-20 21:08:01.731] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:01.731] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:01.731] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2024-11-20 21:08:01.745] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) +[2024-11-20 21:08:01.745] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2024-11-20 21:08:10.618] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-11-20 21:08:10.624] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-11-20 21:08:10.681] [RANK: 0] [info] Extract basic topology: 213176->213176 +[2024-11-20 21:08:10.681] [RANK: 0] [info] Build local dual graph +[2024-11-20 21:08:10.681] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-11-20 21:08:10.843] [RANK: 0] [info] GPS pseudo-diameter:(173) 755-53122 +[2024-11-20 21:08:10.864] [RANK: 0] [info] Create topology (single cell type) +[2024-11-20 21:08:10.864] [RANK: 0] [info] Create topology (generalised) +[2024-11-20 21:08:11.068] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-11-20 21:08:11.084] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-11-20 21:08:11.202] [RANK: 0] [info] Compute ghost indices +[2024-11-20 21:08:11.202] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2024-11-20 21:08:11.208] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2024-11-20 21:08:11.232] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-11-20 21:08:11.244] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-11-20 21:08:11.307] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:11.322] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:11.322] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:11.322] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:11.343] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-11-20 21:08:11.343] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-11-20 21:08:11.343] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2024-11-20 21:08:11.345] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:11.346] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:11.346] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2024-11-20 21:08:11.349] [RANK: 0] [info] Checking required entities per dimension +[2024-11-20 21:08:11.349] [RANK: 0] [info] Cell type: 0 dofmap: 53294x4 +[2024-11-20 21:08:11.372] [RANK: 0] [info] Global index computation +[2024-11-20 21:08:11.372] [RANK: 0] [info] Got 1 index_maps +[2024-11-20 21:08:11.373] [RANK: 0] [info] Get global indices +[2024-11-20 21:08:11.392] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:11.392] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times -[2024-11-19 18:57:12.863] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-11-19 18:57:12.981] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:13.077] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:13.255] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:13.255] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:13.260] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-19 18:57:13.260] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-11-19 18:57:13.265] [RANK: 0] [info] Checking required entities per dimension -[2024-11-19 18:57:13.265] [RANK: 0] [info] Cell type: 0 dofmap: 53224x4 -[2024-11-19 18:57:13.279] [RANK: 0] [info] Global index computation -[2024-11-19 18:57:13.279] [RANK: 0] [info] Got 1 index_maps -[2024-11-19 18:57:13.280] [RANK: 0] [info] Get global indices -[2024-11-19 18:57:13.282] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:13.282] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:13.283] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-19 18:57:13.284] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-19 18:57:13.284] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-11-19 18:57:13.333] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-19 18:57:13.333] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) -[2024-11-19 18:57:13.463] [RANK: 0] [info] Column ghost size increased from 482 to 1290 +[2024-11-20 21:08:11.408] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2024-11-20 21:08:11.601] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:11.752] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:12.120] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:12.144] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:12.174] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-11-20 21:08:12.180] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2024-11-20 21:08:12.190] [RANK: 0] [info] Checking required entities per dimension +[2024-11-20 21:08:12.190] [RANK: 0] [info] Cell type: 0 dofmap: 53294x4 +[2024-11-20 21:08:12.236] [RANK: 0] [info] Global index computation +[2024-11-20 21:08:12.237] [RANK: 0] [info] Got 1 index_maps +[2024-11-20 21:08:12.238] [RANK: 0] [info] Get global indices +[2024-11-20 21:08:12.292] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:12.308] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:12.372] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-11-20 21:08:12.374] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-11-20 21:08:12.374] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2024-11-20 21:08:12.636] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-11-20 21:08:12.636] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) +[2024-11-20 21:08:12.804] [RANK: 0] [info] Column ghost size increased from 458 to 1273 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -3854,7 +3890,7 @@ Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- -[2024-11-19 18:57:13.738] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2024-11-20 21:08:13.752] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -3898,43 +3934,43 @@ total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines -[MPI_MAX] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 9.980000 9.980000 -Build dofmap data | 2 0.025000 0.050000 -Build sparsity | 1 0.040000 0.040000 -Compute connectivity 2-0 | 1 0.000000 0.000000 -Compute dof reordering map | 2 0.005000 0.010000 -Compute entities of dim = 2 | 1 0.400000 0.400000 -Compute graph partition (SCOTCH) | 1 8.900000 8.900000 -Compute local part of mesh dual graph (mixed) | 2 0.215000 0.430000 -Compute local-to-local map | 1 0.000000 0.000000 -Compute non-local part of mesh dual graph | 1 0.110000 0.110000 -Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.120000 0.120000 -Distribute row-wise data (scalable) | 1 0.080000 0.080000 -GPS: create_level_structure | 2 0.005000 0.020000 -Gibbs-Poole-Stockmeyer ordering | 1 0.050000 0.050000 -Init MPI | 1 0.170000 0.170000 -Init PETSc | 1 0.010000 0.010000 -Init dofmap from element dofmap | 2 0.020000 0.040000 -Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 1.550000 1.550000 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 8.900000 8.900000 -SparsityPattern::finalize | 1 0.100000 0.100000 -Topology: create | 1 0.490000 0.490000 -Topology: determine shared index ownership | 1 0.280000 0.280000 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.030000 0.030000 -ZZZ Assemble | 1 0.450000 0.450000 -ZZZ Assemble matrix | 1 0.180000 0.180000 -ZZZ Assemble vector | 1 0.040000 0.040000 -ZZZ Create Mesh | 1 9.980000 9.980000 -ZZZ Create RHS function | 1 0.060000 0.060000 -ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.400000 0.400000 -ZZZ FunctionSpace | 1 0.020000 0.020000 -ZZZ Solve | 1 1.560000 1.560000 +[MPI_MAX] Summary of timings | reps wall avg wall tot +--------------------------------------------------------------------------------------------------------- +Build BoxMesh (tetrahedra) | 1 9.990000 9.990000 +Build dofmap data | 2 0.100000 0.200000 +Build sparsity | 1 0.060000 0.060000 +Compute connectivity 2-0 | 1 0.020000 0.020000 +Compute dof reordering map | 2 0.000000 0.000000 +Compute entities of dim = 2 | 1 0.780000 0.780000 +Compute graph partition (SCOTCH) | 1 8.850000 8.850000 +Compute local part of mesh dual graph (mixed) | 2 0.235000 0.470000 +Compute local-to-local map | 1 0.000000 0.000000 +Compute non-local part of mesh dual graph | 1 0.150000 0.150000 +Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.100000 0.100000 +Distribute row-wise data (scalable) | 1 0.010000 0.010000 +GPS: create_level_structure | 2 0.008000 0.040000 +Gibbs-Poole-Stockmeyer ordering | 1 0.060000 0.060000 +Init MPI | 1 0.140000 0.140000 +Init PETSc | 1 0.040000 0.040000 +Init dofmap from element dofmap | 2 0.045000 0.090000 +Init logging | 1 0.000000 0.000000 +PETSc Krylov solver | 1 4.500000 4.500000 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 +SCOTCH: call SCOTCH_dgraphPart | 1 8.840000 8.840000 +SparsityPattern::finalize | 1 0.110000 0.110000 +Topology: create | 1 0.510000 0.510000 +Topology: determine shared index ownership | 1 0.320000 0.320000 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.020000 0.020000 +ZZZ Assemble | 1 1.130000 1.130000 +ZZZ Assemble matrix | 1 0.510000 0.510000 +ZZZ Assemble vector | 1 0.080000 0.080000 +ZZZ Create Mesh | 1 10.020000 10.020000 +ZZZ Create RHS function | 1 0.230000 0.230000 +ZZZ Create boundary conditions | 1 0.080000 0.080000 +ZZZ Create facets and facet->cell connectivity | 1 0.800000 0.800000 +ZZZ FunctionSpace | 1 0.160000 0.160000 +ZZZ Solve | 1 4.740000 4.740000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** @@ -3943,16 +3979,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt32z with 3 processes, by pbuilder1 on Tue Nov 19 18:57:15 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Wed Nov 20 21:08:18 2024 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total -Time (sec): 1.241e+01 1.000 1.241e+01 +Time (sec): 1.687e+01 1.001 1.686e+01 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 3.517e+06 1.021 3.489e+06 1.047e+07 -Flops/sec: 2.833e+05 1.021 2.811e+05 8.433e+05 +Flops: 3.552e+06 1.029 3.488e+06 1.046e+07 +Flops/sec: 2.106e+05 1.029 2.068e+05 6.205e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 -MPI Msg Len (bytes): 1.885e+05 1.179 5.939e+03 5.345e+05 +MPI Msg Len (bytes): 1.937e+05 1.205 6.022e+03 5.420e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -3961,7 +3997,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 1.2412e+01 100.0% 1.0466e+07 100.0% 9.000e+01 100.0% 5.939e+03 100.0% 5.400e+01 75.0% + 0: Main Stage: 1.6865e+01 100.0% 1.0465e+07 100.0% 9.000e+01 100.0% 6.022e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -3985,32 +4021,32 @@ --- Event Stage 0: Main Stage -BuildTwoSided 5 1.0 6.8495e-02 343.9 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 -BuildTwoSidedF 2 1.0 6.8501e-02 284.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatMult 7 1.0 1.4033e-02 3.6 1.93e+06 1.0 4.2e+01 5.7e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 408 -MatConvert 1 1.0 1.1923e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 -MatAssemblyBegin 5 1.0 7.1248e-02 18.2 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatAssemblyEnd 5 1.0 1.4563e-02 1.4 3.85e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 1 -MatGetRowIJ 4 1.0 5.1200e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 1 1.0 8.0205e-03 183.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 -MatSetPreallCOO 2 1.0 2.3791e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatSetValuesCOO 2 1.0 1.4464e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecTDot 16 1.0 2.1893e-02 1.4 3.20e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 44 -VecNorm 8 1.0 2.2386e-02 2.4 1.60e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 21 -VecCopy 2 1.0 3.8238e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 9 1.0 8.3198e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 14 1.0 3.3735e-04 1.3 2.80e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 2473 -VecAYPX 6 1.0 1.8655e-04 1.4 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1916 -VecScatterBegin 7 1.0 2.8859e-04 1.2 0.00e+00 0.0 4.2e+01 5.7e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 -VecScatterEnd 7 1.0 9.6237e-03 32.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetGraph 3 1.0 7.4079e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 3 1.0 3.6679e-04 1.2 0.00e+00 0.0 3.6e+01 8.3e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 -SFPack 7 1.0 8.1000e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 7 1.0 6.7200e-06 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSetUp 1 1.0 7.0358e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 5.9061e-01 1.0 2.81e+06 1.0 4.2e+01 5.7e+03 2.4e+01 5 80 47 45 33 5 80 47 45 44 14 -PCSetUp 1 1.0 9.5900e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 8 0 0 0 3 8 0 0 0 4 0 -PCApply 8 1.0 5.4291e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 +BuildTwoSided 5 1.0 1.6925e-01 1.5 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 1 0 27 0 7 1 0 27 0 9 0 +BuildTwoSidedF 2 1.0 8.6731e-02 3.2 0.00e+00 0.0 1.2e+01 2.3e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatMult 7 1.0 8.2825e-03 1.2 1.95e+06 1.0 4.2e+01 5.7e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 692 +MatConvert 1 1.0 1.3787e-01 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 +MatAssemblyBegin 5 1.0 9.7877e-02 3.1 0.00e+00 0.0 1.2e+01 2.3e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatAssemblyEnd 5 1.0 2.0184e-01 1.2 3.79e+03 1.2 1.2e+01 1.4e+03 5.0e+00 1 0 13 3 7 1 0 13 3 9 0 +MatGetRowIJ 4 1.0 1.0959e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 1 1.0 7.7775e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 +MatSetPreallCOO 2 1.0 1.1046e-02 3.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatSetValuesCOO 2 1.0 2.2478e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecTDot 16 1.0 5.6913e-03 2.7 3.23e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 167 +VecNorm 8 1.0 4.1308e-02 2.3 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 12 +VecCopy 2 1.0 5.0455e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 9 1.0 1.5793e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 14 1.0 8.5956e-03 21.3 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 97 +VecAYPX 6 1.0 2.5190e-04 1.3 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1419 +VecScatterBegin 7 1.0 3.0529e-04 1.1 0.00e+00 0.0 4.2e+01 5.7e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 +VecScatterEnd 7 1.0 2.1788e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetGraph 3 1.0 9.2132e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 3 1.0 9.9669e-02 1.1 0.00e+00 0.0 3.6e+01 8.4e+02 3.0e+00 1 0 40 6 4 1 0 40 6 6 0 +SFPack 7 1.0 8.9471e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 7 1.0 8.4000e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSetUp 1 1.0 1.5353e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 1.8466e+00 1.0 2.83e+06 1.0 4.2e+01 5.7e+03 2.4e+01 11 80 47 45 33 11 80 47 45 44 5 +PCSetUp 1 1.0 2.6451e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 16 0 0 0 3 16 0 0 0 4 0 +PCApply 8 1.0 1.8123e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 11 0 0 0 0 11 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -4027,9 +4063,9 @@ Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== -Average time to get PetscTime(): 1e-07 -Average time for MPI_Barrier(): 4.7838e-06 -Average time for zero size MPI_Send(): 5.41333e-06 +Average time to get PetscTime(): 1.54e-07 +Average time for MPI_Barrier(): 4.7276e-06 +Average time for zero size MPI_Send(): 4.62633e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) @@ -4086,69 +4122,69 @@ Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line ==== poisson strong scaling (3 processes with ndofs=30000) ==== -[2024-11-19 18:57:15.666] [RANK: 0] [info] Using partitioner with 216000 cell data -[2024-11-19 18:57:15.671] [RANK: 0] [info] Compute partition of cells across ranks -[2024-11-19 18:57:15.671] [RANK: 0] [info] Building mesh dual graph -[2024-11-19 18:57:15.671] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-19 18:57:15.799] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-11-19 18:57:15.847] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:15.847] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:15.847] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-11-19 18:57:15.851] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) -[2024-11-19 18:57:15.852] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-11-19 18:57:26.262] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-19 18:57:26.274] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-19 18:57:26.371] [RANK: 0] [info] Extract basic topology: 212772->212772 -[2024-11-19 18:57:26.371] [RANK: 0] [info] Build local dual graph -[2024-11-19 18:57:26.371] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-19 18:57:26.603] [RANK: 0] [info] GPS pseudo-diameter:(169) 1306-51198 -[2024-11-19 18:57:26.634] [RANK: 0] [info] Create topology (single cell type) -[2024-11-19 18:57:26.634] [RANK: 0] [info] Create topology (generalised) -[2024-11-19 18:57:26.668] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-19 18:57:26.668] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-19 18:57:26.716] [RANK: 0] [info] Compute ghost indices -[2024-11-19 18:57:26.716] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-11-19 18:57:26.716] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-11-19 18:57:26.734] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-19 18:57:26.734] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-19 18:57:26.773] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:26.796] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:26.796] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:26.796] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:26.816] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-19 18:57:26.820] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-19 18:57:26.820] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-11-19 18:57:26.822] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:26.823] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:26.823] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-11-19 18:57:26.824] [RANK: 0] [info] Checking required entities per dimension -[2024-11-19 18:57:26.824] [RANK: 0] [info] Cell type: 0 dofmap: 53193x4 -[2024-11-19 18:57:26.837] [RANK: 0] [info] Global index computation -[2024-11-19 18:57:26.838] [RANK: 0] [info] Got 1 index_maps -[2024-11-19 18:57:26.839] [RANK: 0] [info] Get global indices -[2024-11-19 18:57:26.857] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:26.857] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:19.212] [RANK: 0] [info] Using partitioner with 216000 cell data +[2024-11-20 21:08:19.214] [RANK: 0] [info] Compute partition of cells across ranks +[2024-11-20 21:08:19.214] [RANK: 0] [info] Building mesh dual graph +[2024-11-20 21:08:19.214] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-11-20 21:08:19.516] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2024-11-20 21:08:19.544] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:19.548] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:19.548] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2024-11-20 21:08:19.606] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) +[2024-11-20 21:08:19.606] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2024-11-20 21:08:30.025] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-11-20 21:08:30.032] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-11-20 21:08:30.204] [RANK: 0] [info] Extract basic topology: 212800->212800 +[2024-11-20 21:08:30.204] [RANK: 0] [info] Build local dual graph +[2024-11-20 21:08:30.204] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-11-20 21:08:30.519] [RANK: 0] [info] GPS pseudo-diameter:(168) 1826-51364 +[2024-11-20 21:08:30.569] [RANK: 0] [info] Create topology (single cell type) +[2024-11-20 21:08:30.569] [RANK: 0] [info] Create topology (generalised) +[2024-11-20 21:08:30.592] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-11-20 21:08:30.600] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-11-20 21:08:30.705] [RANK: 0] [info] Compute ghost indices +[2024-11-20 21:08:30.705] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2024-11-20 21:08:30.712] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2024-11-20 21:08:30.748] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-11-20 21:08:30.768] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-11-20 21:08:30.897] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:30.936] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:30.948] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:30.970] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:31.032] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-11-20 21:08:31.040] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-11-20 21:08:31.040] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2024-11-20 21:08:31.053] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:31.076] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:31.076] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2024-11-20 21:08:31.129] [RANK: 0] [info] Checking required entities per dimension +[2024-11-20 21:08:31.129] [RANK: 0] [info] Cell type: 0 dofmap: 53200x4 +[2024-11-20 21:08:31.176] [RANK: 0] [info] Global index computation +[2024-11-20 21:08:31.177] [RANK: 0] [info] Got 1 index_maps +[2024-11-20 21:08:31.178] [RANK: 0] [info] Get global indices +[2024-11-20 21:08:31.236] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:31.260] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times -[2024-11-19 18:57:26.896] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-11-19 18:57:27.102] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:27.195] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:27.547] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:27.547] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:27.561] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-19 18:57:27.561] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-11-19 18:57:27.565] [RANK: 0] [info] Checking required entities per dimension -[2024-11-19 18:57:27.572] [RANK: 0] [info] Cell type: 0 dofmap: 53193x4 -[2024-11-19 18:57:27.598] [RANK: 0] [info] Global index computation -[2024-11-19 18:57:27.598] [RANK: 0] [info] Got 1 index_maps -[2024-11-19 18:57:27.599] [RANK: 0] [info] Get global indices -[2024-11-19 18:57:27.601] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-19 18:57:27.601] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-19 18:57:27.602] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-19 18:57:27.603] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-19 18:57:27.603] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-11-19 18:57:27.696] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-19 18:57:27.696] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) -[2024-11-19 18:57:27.787] [RANK: 0] [info] Column ghost size increased from 480 to 1274 +[2024-11-20 21:08:31.304] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2024-11-20 21:08:31.650] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:31.712] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:32.159] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:32.159] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:32.174] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-11-20 21:08:32.174] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2024-11-20 21:08:32.196] [RANK: 0] [info] Checking required entities per dimension +[2024-11-20 21:08:32.197] [RANK: 0] [info] Cell type: 0 dofmap: 53200x4 +[2024-11-20 21:08:32.237] [RANK: 0] [info] Global index computation +[2024-11-20 21:08:32.237] [RANK: 0] [info] Got 1 index_maps +[2024-11-20 21:08:32.238] [RANK: 0] [info] Get global indices +[2024-11-20 21:08:32.260] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-11-20 21:08:32.261] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-11-20 21:08:32.262] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-11-20 21:08:32.264] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-11-20 21:08:32.264] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2024-11-20 21:08:32.460] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-11-20 21:08:32.460] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) +[2024-11-20 21:08:32.690] [RANK: 0] [info] Column ghost size increased from 477 to 1306 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -4162,7 +4198,7 @@ Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- -[2024-11-19 18:57:27.937] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2024-11-20 21:08:33.267] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -4208,41 +4244,41 @@ [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 11.250000 11.250000 -Build dofmap data | 2 0.040000 0.080000 -Build sparsity | 1 0.050000 0.050000 -Compute connectivity 2-0 | 1 0.000000 0.000000 +Build BoxMesh (tetrahedra) | 1 12.120000 12.120000 +Build dofmap data | 2 0.125000 0.250000 +Build sparsity | 1 0.210000 0.210000 +Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.660000 0.660000 -Compute graph partition (SCOTCH) | 1 10.400000 10.400000 -Compute local part of mesh dual graph (mixed) | 2 0.195000 0.390000 -Compute local-to-local map | 1 0.010000 0.010000 -Compute non-local part of mesh dual graph | 1 0.060000 0.060000 -Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.150000 0.150000 -Distribute row-wise data (scalable) | 1 0.010000 0.010000 -GPS: create_level_structure | 2 0.005000 0.010000 -Gibbs-Poole-Stockmeyer ordering | 1 0.030000 0.030000 -Init MPI | 1 0.150000 0.150000 -Init PETSc | 1 0.050000 0.050000 -Init dofmap from element dofmap | 2 0.030000 0.060000 +Compute entities of dim = 2 | 1 0.870000 0.870000 +Compute graph partition (SCOTCH) | 1 10.370000 10.370000 +Compute local part of mesh dual graph (mixed) | 2 0.335000 0.670000 +Compute local-to-local map | 1 0.000000 0.000000 +Compute non-local part of mesh dual graph | 1 0.120000 0.120000 +Compute-local-to-global links for global/local adjacency list | 1 0.020000 0.020000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.230000 0.230000 +Distribute row-wise data (scalable) | 1 0.100000 0.100000 +GPS: create_level_structure | 6 0.010000 0.030000 +Gibbs-Poole-Stockmeyer ordering | 1 0.100000 0.100000 +Init MPI | 1 0.230000 0.230000 +Init PETSc | 1 0.000000 0.000000 +Init dofmap from element dofmap | 2 0.055000 0.110000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 3.830000 3.830000 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.010000 0.010000 -SCOTCH: call SCOTCH_dgraphPart | 1 10.390000 10.390000 -SparsityPattern::finalize | 1 0.040000 0.040000 -Topology: create | 1 0.170000 0.170000 -Topology: determine shared index ownership | 1 0.010000 0.010000 +PETSc Krylov solver | 1 4.310000 4.310000 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.040000 0.040000 +SCOTCH: call SCOTCH_dgraphPart | 1 10.360000 10.360000 +SparsityPattern::finalize | 1 0.110000 0.110000 +Topology: create | 1 0.450000 0.450000 +Topology: determine shared index ownership | 1 0.080000 0.080000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.030000 0.030000 -ZZZ Assemble | 1 0.330000 0.330000 -ZZZ Assemble matrix | 1 0.120000 0.120000 -ZZZ Assemble vector | 1 0.020000 0.020000 -ZZZ Create Mesh | 1 11.270000 11.270000 -ZZZ Create RHS function | 1 0.110000 0.110000 +ZZZ Assemble | 1 0.990000 0.990000 +ZZZ Assemble matrix | 1 0.440000 0.440000 +ZZZ Assemble vector | 1 0.090000 0.090000 +ZZZ Create Mesh | 1 12.120000 12.120000 +ZZZ Create RHS function | 1 0.230000 0.230000 ZZZ Create boundary conditions | 1 0.020000 0.020000 -ZZZ Create facets and facet->cell connectivity | 1 0.660000 0.660000 -ZZZ FunctionSpace | 1 0.040000 0.040000 -ZZZ Solve | 1 3.840000 3.840000 +ZZZ Create facets and facet->cell connectivity | 1 0.880000 0.880000 +ZZZ FunctionSpace | 1 0.090000 0.090000 +ZZZ Solve | 1 4.310000 4.310000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** @@ -4251,16 +4287,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt32z with 3 processes, by pbuilder1 on Tue Nov 19 18:57:31 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Wed Nov 20 21:08:37 2024 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total -Time (sec): 1.614e+01 1.001 1.614e+01 +Time (sec): 1.838e+01 1.000 1.838e+01 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 3.531e+06 1.026 3.489e+06 1.047e+07 -Flops/sec: 2.188e+05 1.026 2.161e+05 6.484e+05 +Flops: 3.527e+06 1.022 3.488e+06 1.046e+07 +Flops/sec: 1.919e+05 1.022 1.897e+05 5.691e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 -MPI Msg Len (bytes): 1.881e+05 1.189 5.918e+03 5.326e+05 +MPI Msg Len (bytes): 1.999e+05 1.234 6.201e+03 5.581e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -4269,7 +4305,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 1.6141e+01 100.0% 1.0467e+07 100.0% 9.000e+01 100.0% 5.918e+03 100.0% 5.400e+01 75.0% + 0: Main Stage: 1.8384e+01 100.0% 1.0463e+07 100.0% 9.000e+01 100.0% 6.201e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -4293,32 +4329,32 @@ --- Event Stage 0: Main Stage -BuildTwoSided 5 1.0 6.3698e-04 3.5 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 -BuildTwoSidedF 2 1.0 6.6890e-04 2.4 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatMult 7 1.0 3.6398e-02 9.6 1.93e+06 1.0 4.2e+01 5.7e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 157 -MatConvert 1 1.0 7.6655e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 -MatAssemblyBegin 5 1.0 3.8008e-03 1.1 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatAssemblyEnd 5 1.0 6.6880e-03 1.0 3.90e+03 1.3 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 2 -MatGetRowIJ 4 1.0 5.6400e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 1 1.0 4.0191e-04 3.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 -MatSetPreallCOO 2 1.0 2.6877e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatSetValuesCOO 2 1.0 1.5494e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecTDot 16 1.0 8.7486e-02 5.7 3.21e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 11 -VecNorm 8 1.0 5.3378e-02 1.9 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 9 -VecCopy 2 1.0 4.3558e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 9 1.0 8.8437e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 14 1.0 3.4423e-04 1.1 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 2423 -VecAYPX 6 1.0 1.6191e-04 1.1 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 2208 -VecScatterBegin 7 1.0 5.2170e-04 1.7 0.00e+00 0.0 4.2e+01 5.7e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 -VecScatterEnd 7 1.0 3.1040e-02 166.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetGraph 3 1.0 7.0438e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 3 1.0 2.9815e-04 1.0 0.00e+00 0.0 3.6e+01 8.3e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 -SFPack 7 1.0 8.9996e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 7 1.0 8.9600e-06 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSetUp 1 1.0 9.6197e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 2.1263e+00 1.0 2.82e+06 1.0 4.2e+01 5.7e+03 2.4e+01 13 80 47 45 33 13 80 47 45 44 4 -PCSetUp 1 1.0 1.7091e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 11 0 0 0 3 11 0 0 0 4 0 -PCApply 8 1.0 2.0204e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 12 0 0 0 0 12 0 0 0 0 0 +BuildTwoSided 5 1.0 1.3263e-02 8.2 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 +BuildTwoSidedF 2 1.0 1.3353e-02 7.9 0.00e+00 0.0 1.2e+01 2.3e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatMult 7 1.0 6.1503e-02 7.8 1.93e+06 1.0 4.2e+01 5.9e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 93 +MatConvert 1 1.0 5.9163e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 +MatAssemblyBegin 5 1.0 2.5943e-02 4.7 0.00e+00 0.0 1.2e+01 2.3e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatAssemblyEnd 5 1.0 6.7705e-02 1.1 4.07e+03 1.3 1.2e+01 1.5e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 0 +MatGetRowIJ 4 1.0 4.4097e-05 3.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 1 1.0 1.9836e-02 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 +MatSetPreallCOO 2 1.0 1.1302e-02 3.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatSetValuesCOO 2 1.0 2.6209e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecTDot 16 1.0 1.4045e-01 1.5 3.20e+05 1.0 0.0e+00 0.0e+00 1.6e+01 1 9 0 0 22 1 9 0 0 30 7 +VecNorm 8 1.0 5.3324e-02 1.4 1.60e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 9 +VecCopy 2 1.0 6.7193e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 9 1.0 1.5013e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 14 1.0 5.5055e-04 1.1 2.80e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1515 +VecAYPX 6 1.0 2.9215e-04 1.1 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1224 +VecScatterBegin 7 1.0 4.0722e-04 1.2 0.00e+00 0.0 4.2e+01 5.9e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 +VecScatterEnd 7 1.0 5.3404e-02 186.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetGraph 3 1.0 8.8771e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 3 1.0 4.0688e-04 1.1 0.00e+00 0.0 3.6e+01 8.6e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 +SFPack 7 1.0 9.6729e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 7 1.0 1.6360e-05 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSetUp 1 1.0 1.2913e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 2.4227e+00 1.0 2.81e+06 1.0 4.2e+01 5.9e+03 2.4e+01 13 80 47 45 33 13 80 47 45 44 3 +PCSetUp 1 1.0 1.8575e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 10 0 0 0 3 10 0 0 0 4 0 +PCApply 8 1.0 2.2310e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 12 0 0 0 0 12 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -4335,9 +4371,9 @@ Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== -Average time to get PetscTime(): 9.2e-08 -Average time for MPI_Barrier(): 1.07036e-05 -Average time for zero size MPI_Send(): 4.69333e-06 +Average time to get PetscTime(): 1.56e-07 +Average time for MPI_Barrier(): 4.9036e-06 +Average time for zero size MPI_Send(): 5.21267e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) @@ -4398,7 +4434,7 @@ dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4434,9 +4470,9 @@ dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src -dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.9.0-2_armhf.deb'. -dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.9.0-2_all.deb'. dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.9.0-2_armhf.deb'. +dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.9.0-2_all.deb'. +dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.9.0-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.9.0-2_armhf.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.9.0-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4444,12 +4480,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/32565/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/32565/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13302 and its subdirectories -I: Current time: Tue Nov 19 18:58:00 -12 2024 -I: pbuilder-time-stamp: 1732085880 +I: removing directory /srv/workspace/pbuilder/32565 and its subdirectories +I: Current time: Wed Nov 20 21:09:35 +14 2024 +I: pbuilder-time-stamp: 1732086575