Diff of the two buildlogs: -- --- b1/build.log 2025-10-01 09:15:26.025601796 +0000 +++ b2/build.log 2025-10-01 09:36:30.699031330 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Sep 30 20:54:23 -12 2025 -I: pbuilder-time-stamp: 1759308863 +I: Current time: Wed Nov 4 05:38:28 +14 2026 +I: pbuilder-time-stamp: 1793720308 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -48,53 +48,85 @@ dpkg-source: info: applying graphviz_compat.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3161229/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2379232/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 3 15:38 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2379232/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2379232/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='653069c46fa4442ea2fcb203809c2f9b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3161229' - PS1='# ' - PS2='> ' + INVOCATION_ID=fa26fe6a3faa4aa2a8729f35255bccc3 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2379232 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ARNQ8EqV/pbuilderrc_Pwgv --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ARNQ8EqV/b1 --logfile b1/build.log snakemake_7.32.4-7.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ARNQ8EqV/pbuilderrc_HUzP --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ARNQ8EqV/b2 --logfile b2/build.log snakemake_7.32.4-7.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3161229/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2379232/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -643,7 +675,7 @@ Get: 409 http://deb.debian.org/debian unstable/main arm64 r-cran-shiny all 1.10.0+dfsg-2 [3139 kB] Get: 410 http://deb.debian.org/debian unstable/main arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1473 kB] Get: 411 http://deb.debian.org/debian unstable/main arm64 stress arm64 1.0.7-1+b1 [21.8 kB] -Fetched 249 MB in 2s (128 MB/s) +Fetched 249 MB in 1s (183 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19958 files and directories currently installed.) @@ -1958,8 +1990,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Oct 1 08:55:10 UTC 2025. -Universal Time is now: Wed Oct 1 08:55:10 UTC 2025. +Local time is now: Tue Nov 3 15:39:15 UTC 2026. +Universal Time is now: Tue Nov 3 15:39:15 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up liberror-perl (0.17030-1) ... @@ -2367,7 +2399,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/snakemake-7.32.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snakemake_7.32.4-7_source.changes +I: user script /srv/workspace/pbuilder/2379232/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2379232/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/snakemake-7.32.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../snakemake_7.32.4-7_source.changes dpkg-buildpackage: info: source package snakemake dpkg-buildpackage: info: source version 7.32.4-7 dpkg-buildpackage: info: source distribution unstable @@ -2706,7 +2742,7 @@ Copying snakemake.egg-info to build/bdist.linux-aarch64/wheel/./snakemake-7.32.4.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/snakemake-7.32.4.dist-info/WHEEL -creating '/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/.tmp-bfgl9ztn/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/.tmp-fiqu7_lc/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' @@ -3405,150 +3441,150 @@ .pybuild/cpython3_3.13_snakemake/build/tests/tests.py::test_checkpoint_allowed_rules PASSED [ 86%] .pybuild/cpython3_3.13_snakemake/build/tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 86%] .pybuild/cpython3_3.13_snakemake/build/tests/tests.py::test_issue1331 Timeout (0:01:00)! -Thread 0x0000ffff8cddf180 (most recent call first): +Thread 0x0000ffff71fbf180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff617af180 (most recent call first): +Thread 0x0000ffff3b7ef180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff3d7af180 (most recent call first): +Thread 0x0000ffff727cf180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff2bfff180 (most recent call first): - File "/usr/lib/python3.13/subprocess.py", line 1801 in _posix_spawn - File "/usr/lib/python3.13/subprocess.py", line 1857 in _execute_child - File "/usr/lib/python3.13/subprocess.py", line 1039 in __init__ - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/shell.py", line 258 in __new__ - File "/tmp/snakemake-thdsy9u1/Snakefile", line 34 in __rule_trimming - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/executors/__init__.py", line 2656 in run_wrapper - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/executors/__init__.py", line 699 in cached_or_run +Thread 0x0000ffff3a7cf180 (most recent call first): + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/executors/__init__.py", line 679 in run_group_job File "/usr/lib/python3.13/concurrent/futures/thread.py", line 59 in run File "/usr/lib/python3.13/concurrent/futures/thread.py", line 93 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff2afdf180 (most recent call first): +Thread 0x0000ffff27fff180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff3efdf180 (most recent call first): +Thread 0x0000ffff26fdf180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff63fff180 (most recent call first): +Thread 0x0000ffff267cf180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff3ffff180 (most recent call first): +Thread 0x0000ffff3afdf180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff60f9f180 (most recent call first): +Thread 0x0000ffff58f9f180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff61fbf180 (most recent call first): +Thread 0x0000ffff3bfff180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff627cf180 (most recent call first): +Thread 0x0000ffff73fff180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff62fdf180 (most recent call first): +Thread 0x0000ffff59fbf180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff637ef180 (most recent call first): +Thread 0x0000ffff5a7cf180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff7d7af180 (most recent call first): +Thread 0x0000ffff5afdf180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff7e7cf180 (most recent call first): +Thread 0x0000ffff5b7ef180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff7cf9f180 (most recent call first): +Thread 0x0000ffff717af180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff7dfbf180 (most recent call first): +Thread 0x0000ffff9101f180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff7f7ef180 (most recent call first): +Thread 0x0000ffff5bfff180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff7ffff180 (most recent call first): +Thread 0x0000ffff72fdf180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff8d5ef180 (most recent call first): +Thread 0x0000ffff737ef180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff8ffff180 (most recent call first): +Thread 0x0000ffff889f4180 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap -Thread 0x0000ffff9b737760 (most recent call first): - File "", line 19 in exists - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/io.py", line 863 in get_missing - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/io.py", line 872 in wait_for_files - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/dag.py", line 605 in check_and_touch_output - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/jobs.py", line 1178 in postprocess - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/executors/__init__.py", line 293 in handle_job_success - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/executors/__init__.py", line 730 in handle_job_success - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/scheduler.py", line 650 in _finish_jobs - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/scheduler.py", line 550 in schedule +Thread 0x0000ffff89204180 (most recent call first): + File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker + File "/usr/lib/python3.13/threading.py", line 994 in run + File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner + File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap + +Thread 0x0000ffff8bb54180 (most recent call first): + File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker + File "/usr/lib/python3.13/threading.py", line 994 in run + File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner + File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap + +Thread 0x0000ffff97b5c760 (most recent call first): + File "/usr/lib/python3.13/threading.py", line 359 in wait + File "/usr/lib/python3.13/threading.py", line 511 in acquire + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/scheduler.py", line 546 in schedule File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/workflow.py", line 1242 in execute File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/__init__.py", line 792 in snakemake File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/tests/common.py", line 234 in run @@ -3642,10 +3678,10 @@ warnings.warn( tests/tests.py::test_glpk_solver - :891: DeprecationWarning: This process (pid=3204655) is multi-threaded, use of fork() may lead to deadlocks in the child. + :891: DeprecationWarning: This process (pid=2441751) is multi-threaded, use of fork() may lead to deadlocks in the child. -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 249 passed, 46 skipped, 99 deselected, 1 xfailed, 21 warnings in 1086.73s (0:18:06) = += 249 passed, 46 skipped, 99 deselected, 1 xfailed, 21 warnings in 1093.44s (0:18:13) = I: pybuild pybuild:334: rm -fr /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/bin /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/tests make[1]: Leaving directory '/build/reproducible-path/snakemake-7.32.4' create-stamp debian/debhelper-build-stamp @@ -3688,12 +3724,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2379232/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2379232/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3161229 and its subdirectories -I: Current time: Tue Sep 30 21:15:25 -12 2025 -I: pbuilder-time-stamp: 1759310125 +I: removing directory /srv/workspace/pbuilder/2379232 and its subdirectories +I: Current time: Wed Nov 4 05:59:29 +14 2026 +I: pbuilder-time-stamp: 1793721569