Diff of the two buildlogs: -- --- b1/build.log 2024-11-13 19:19:32.996048754 +0000 +++ b2/build.log 2024-11-13 19:44:31.326506569 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Dec 16 13:19:34 -12 2025 -I: pbuilder-time-stamp: 1765934374 +I: Current time: Wed Dec 17 15:42:37 +14 2025 +I: pbuilder-time-stamp: 1765935757 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -50,52 +50,84 @@ dpkg-source: info: applying no_pkg_resources.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2721/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/268808/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 17 01:42 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/268808/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/268808/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='18970872a0704d90983439aa1147d7af' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2721' - PS1='# ' - PS2='> ' + INVOCATION_ID=ad0f7add244949bd96579fd612e27958 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=268808 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dcwNJEBx/pbuilderrc_e0EB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dcwNJEBx/b1 --logfile b1/build.log snakemake_7.32.4-6.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dcwNJEBx/pbuilderrc_uefJ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dcwNJEBx/b2 --logfile b2/build.log snakemake_7.32.4-6.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2721/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/268808/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -629,7 +661,7 @@ Get: 394 http://deb.debian.org/debian unstable/main arm64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get: 395 http://deb.debian.org/debian unstable/main arm64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 396 http://deb.debian.org/debian unstable/main arm64 stress arm64 1.0.7-1+b1 [21.8 kB] -Fetched 230 MB in 1s (207 MB/s) +Fetched 230 MB in 2s (134 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20090 files and directories currently installed.) @@ -1894,8 +1926,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Dec 17 01:20:18 UTC 2025. -Universal Time is now: Wed Dec 17 01:20:18 UTC 2025. +Local time is now: Wed Dec 17 01:43:50 UTC 2025. +Universal Time is now: Wed Dec 17 01:43:50 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up liberror-perl (0.17029-2) ... @@ -2298,7 +2330,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/snakemake-7.32.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snakemake_7.32.4-6_source.changes +I: user script /srv/workspace/pbuilder/268808/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/268808/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/snakemake-7.32.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../snakemake_7.32.4-6_source.changes dpkg-buildpackage: info: source package snakemake dpkg-buildpackage: info: source version 7.32.4-6 dpkg-buildpackage: info: source distribution unstable @@ -2624,7 +2660,7 @@ Copying snakemake.egg-info to build/bdist.linux-aarch64/wheel/./snakemake-7.32.4.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/snakemake-7.32.4.dist-info/WHEEL -creating '/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/.tmp-ri8ge1gd/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/.tmp-wsfxsj02/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' @@ -3229,7 +3265,7 @@ .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test_group_job_resources_with_pipe PASSED [ 55%] .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test_group_job_resources_with_pipe_with_too_much_constraint PASSED [ 55%] .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test_multicomp_group_jobs Timeout (0:01:00)! -Thread 0x0000ffff7cf9f180 (most recent call first): +Thread 0x0000ffff3b7ef180 (most recent call first): File "/usr/lib/python3.12/selectors.py", line 468 in select File "/usr/lib/python3.12/asyncio/base_events.py", line 1954 in _run_once File "/usr/lib/python3.12/asyncio/base_events.py", line 640 in run_forever @@ -3241,7 +3277,7 @@ File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff954bd180 (most recent call first): +Thread 0x0000ffff57fff180 (most recent call first): File "/usr/lib/python3.12/selectors.py", line 468 in select File "/usr/lib/python3.12/asyncio/base_events.py", line 1954 in _run_once File "/usr/lib/python3.12/asyncio/base_events.py", line 640 in run_forever @@ -3253,109 +3289,103 @@ File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7d7af180 (most recent call first): +Thread 0x0000ffff3bfff180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7dfbf180 (most recent call first): +Thread 0x0000ffff54f9f180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7e7cf180 (most recent call first): +Thread 0x0000ffff557af180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7efdf180 (most recent call first): +Thread 0x0000ffff55fbf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7f7ef180 (most recent call first): +Thread 0x0000ffff567cf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7ffff180 (most recent call first): +Thread 0x0000ffff56fdf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff94cad180 (most recent call first): +Thread 0x0000ffff6e7cf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff977ef180 (most recent call first): +Thread 0x0000ffff577ef180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff97fff180 (most recent call first): +Thread 0x0000ffff6efdf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff962ce180 (most recent call first): +Thread 0x0000ffff6cf9f180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff96cde180 (most recent call first): +Thread 0x0000ffff6dfbf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb6e2f180 (most recent call first): +Thread 0x0000ffff6f7ef180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb4a6d180 (most recent call first): +Thread 0x0000ffff6ffff180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb527d180 (most recent call first): +Thread 0x0000ffff84b2d180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb5a8d180 (most recent call first): +Thread 0x0000ffff8533d180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb629d180 (most recent call first): +Thread 0x0000ffff85ecf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb766f180 (most recent call first): - File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker - File "/usr/lib/python3.12/threading.py", line 1012 in run - File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner - File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap - -Thread 0x0000ffffbed12740 (most recent call first): +Thread 0x0000ffff8ddb0740 (most recent call first): File "/usr/lib/python3.12/threading.py", line 355 in wait File "/usr/lib/python3.12/threading.py", line 507 in acquire File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/scheduler.py", line 546 in schedule @@ -3491,25 +3521,41 @@ .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test_checkpoint_allowed_rules PASSED [ 86%] .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 87%] .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test_issue1331 Timeout (0:01:00)! -Thread 0x0000ffff5bfff180 (most recent call first): +Thread 0x0000ffff3afdf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff96cdf180 (most recent call first): - File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker +Thread 0x0000ffff3a7cf180 (most recent call first): + File "/usr/lib/python3.12/subprocess.py", line 2011 in _try_wait + File "/usr/lib/python3.12/subprocess.py", line 2053 in _wait + File "/usr/lib/python3.12/subprocess.py", line 1264 in wait + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/shell.py", line 284 in __new__ + File "/tmp/snakemake-gp0ob806/Snakefile", line 76 in __rule_sort + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 2656 in run_wrapper + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 699 in cached_or_run + File "/usr/lib/python3.12/concurrent/futures/thread.py", line 58 in run + File "/usr/lib/python3.12/concurrent/futures/thread.py", line 92 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff962ce180 (most recent call first): - File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker +Thread 0x0000ffff397af180 (most recent call first): + File "/usr/lib/python3.12/subprocess.py", line 2011 in _try_wait + File "/usr/lib/python3.12/subprocess.py", line 2053 in _wait + File "/usr/lib/python3.12/subprocess.py", line 1264 in wait + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/shell.py", line 284 in __new__ + File "/tmp/snakemake-gp0ob806/Snakefile", line 56 in __rule_align + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 2656 in run_wrapper + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 699 in cached_or_run + File "/usr/lib/python3.12/concurrent/futures/thread.py", line 58 in run + File "/usr/lib/python3.12/concurrent/futures/thread.py", line 92 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff97fff180 (most recent call first): +Thread 0x0000ffff8788f180 (most recent call first): File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 679 in run_group_job File "/usr/lib/python3.12/concurrent/futures/thread.py", line 58 in run File "/usr/lib/python3.12/concurrent/futures/thread.py", line 92 in _worker @@ -3517,25 +3563,25 @@ File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff597af180 (most recent call first): +Thread 0x0000ffff6cf9f180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb87ef180 (most recent call first): +Thread 0x0000ffff6efdf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff58f9f180 (most recent call first): +Thread 0x0000ffff39fbf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff954bd180 (most recent call first): +Thread 0x0000ffff57fff180 (most recent call first): File "/usr/lib/python3.12/selectors.py", line 468 in select File "/usr/lib/python3.12/asyncio/base_events.py", line 1954 in _run_once File "/usr/lib/python3.12/asyncio/base_events.py", line 640 in run_forever @@ -3547,91 +3593,85 @@ File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7d7af180 (most recent call first): - File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker - File "/usr/lib/python3.12/threading.py", line 1012 in run - File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner - File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap - -Thread 0x0000ffff7dfbf180 (most recent call first): +Thread 0x0000ffff3bfff180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7e7cf180 (most recent call first): +Thread 0x0000ffff54f9f180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7efdf180 (most recent call first): +Thread 0x0000ffff557af180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7f7ef180 (most recent call first): +Thread 0x0000ffff55fbf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff7ffff180 (most recent call first): +Thread 0x0000ffff567cf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff94cad180 (most recent call first): +Thread 0x0000ffff56fdf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffff977ef180 (most recent call first): +Thread 0x0000ffff6e7cf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb6e2f180 (most recent call first): +Thread 0x0000ffff577ef180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb4a6d180 (most recent call first): +Thread 0x0000ffff6f7ef180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb527d180 (most recent call first): +Thread 0x0000ffff6ffff180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb5a8d180 (most recent call first): +Thread 0x0000ffff84b2d180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb629d180 (most recent call first): +Thread 0x0000ffff8533d180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffb766f180 (most recent call first): +Thread 0x0000ffff85ecf180 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x0000ffffbed12740 (most recent call first): +Thread 0x0000ffff8ddb0740 (most recent call first): File "/usr/lib/python3.12/threading.py", line 355 in wait File "/usr/lib/python3.12/threading.py", line 507 in acquire File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/scheduler.py", line 546 in schedule @@ -3726,10 +3766,10 @@ warnings.warn( tests/tests.py::test_glpk_solver - :888: DeprecationWarning: This process (pid=53139) is multi-threaded, use of fork() may lead to deadlocks in the child. + :888: DeprecationWarning: This process (pid=289124) is multi-threaded, use of fork() may lead to deadlocks in the child. -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 256 passed, 46 skipped, 92 deselected, 1 xfailed, 21 warnings in 1201.53s (0:20:01) = += 256 passed, 46 skipped, 92 deselected, 1 xfailed, 21 warnings in 1247.98s (0:20:47) = I: pybuild pybuild:334: rm -fr /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/bin /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/tests make[1]: Leaving directory '/build/reproducible-path/snakemake-7.32.4' create-stamp debian/debhelper-build-stamp @@ -3770,24 +3810,26 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/268808/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/268808/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem W: Stray processes left from build: -* system-pbuilder-build-snakemake_7.32.4\x2d6-2721.slice - Slice /system/pbuilder/build/snakemake_7.32.4-6/2721 +* system-pbuilder-build-snakemake_7.32.4\x2d6-268808.slice - Slice /system/pbuilder/build/snakemake_7.32.4-6/268808 Loaded: loaded - Active: active since Tue 2025-12-16 13:19:40 -12; 22min ago + Active: active since Wed 2025-12-17 15:42:43 +14; 24min ago Tasks: 1 Memory: 1.6G - CPU: 6min 21.683s - CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-snakemake_7.32.4\x2d6.slice/system-pbuilder-build-snakemake_7.32.4\x2d6-2721.slice - `-run-r1a75950d2f314a31b9f1be58d7d647a4.scope - `-208793 /usr/bin/bash -c "set -euo pipefail; grep 0 < test.0.txt > test.0.out" + CPU: 6min 19.224s + CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-snakemake_7.32.4\x2d6.slice/system-pbuilder-build-snakemake_7.32.4\x2d6-268808.slice + `-run-r86420132b408478c96f36971d00e5c94.scope + `-439020 /usr/bin/bash -c "set -euo pipefail; grep 0 < test.0.txt > test.0.out" -Dec 16 13:19:40 codethink03-arm64 systemd[1]: Created slice system-pbuilder-build-snakemake_7.32.4\x2d6-2721.slice - Slice /system/pbuilder/build/snakemake_7.32.4-6/2721. +Dec 17 15:42:43 codethink01-arm64 systemd[1]: Created slice system-pbuilder-build-snakemake_7.32.4\x2d6-268808.slice - Slice /system/pbuilder/build/snakemake_7.32.4-6/268808. I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2721 and its subdirectories -I: Current time: Tue Dec 16 13:42:31 -12 2025 -I: pbuilder-time-stamp: 1765935751 +I: removing directory /srv/workspace/pbuilder/268808 and its subdirectories +I: Current time: Wed Dec 17 16:07:30 +14 2025 +I: pbuilder-time-stamp: 1765937250