Diff of the two buildlogs:
--
--- b1/build.log 2025-01-18 00:37:35.801401787 +0000
+++ b2/build.log 2025-01-18 00:40:02.898712292 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Thu Feb 19 18:54:25 -12 2026
-I: pbuilder-time-stamp: 1771570465
+I: Current time: Fri Feb 20 21:00:38 +14 2026
+I: pbuilder-time-stamp: 1771570838
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
@@ -26,52 +26,84 @@
dpkg-source: info: applying pr235.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/533445/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/2288987/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink03-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Feb 20 07:00 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/2288987/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/2288987/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='arm64'
- DEBIAN_FRONTEND='noninteractive'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=arm64
+ DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
- DISTRIBUTION='unstable'
- HOME='/root'
- HOST_ARCH='arm64'
+ DIRSTACK=()
+ DISTRIBUTION=unstable
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=aarch64
+ HOST_ARCH=arm64
IFS='
'
- INVOCATION_ID='c40f688f18a948909ba101dd1e103068'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='533445'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=f7094f86d59c48b9b5d676dd0739f3e0
+ LANG=C
+ LANGUAGE=nl_BE:nl
+ LC_ALL=C
+ MACHTYPE=aarch64-unknown-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=2288987
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/pbuilderrc_Oq7x --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/b1 --logfile b1/build.log python-gffutils_0.13-2.dsc'
- SUDO_GID='109'
- SUDO_UID='104'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://192.168.101.4:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/pbuilderrc_vqv2 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/b2 --logfile b2/build.log python-gffutils_0.13-2.dsc'
+ SUDO_GID=109
+ SUDO_UID=104
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://192.168.101.4:3128
I: uname -a
- Linux codethink01-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/533445/tmp/hooks/D02_print_environment finished
+I: user script /srv/workspace/pbuilder/2288987/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -283,7 +315,7 @@
Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-pybedtools arm64 0.10.0-4 [12.3 MB]
Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-pyfaidx all 0.8.1.3-1 [29.1 kB]
Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.4-1 [250 kB]
-Fetched 85.3 MB in 1s (70.3 MB/s)
+Fetched 85.3 MB in 1s (138 MB/s)
Preconfiguring packages ...
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19965 files and directories currently installed.)
@@ -799,8 +831,8 @@
Setting up tzdata (2024b-6) ...
Current default time zone: 'Etc/UTC'
-Local time is now: Fri Feb 20 06:55:35 UTC 2026.
-Universal Time is now: Fri Feb 20 06:55:35 UTC 2026.
+Local time is now: Fri Feb 20 07:01:04 UTC 2026.
+Universal Time is now: Fri Feb 20 07:01:04 UTC 2026.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ...
@@ -934,7 +966,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/python-gffutils-0.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-gffutils_0.13-2_source.changes
+I: user script /srv/workspace/pbuilder/2288987/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/2288987/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/python-gffutils-0.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-gffutils_0.13-2_source.changes
dpkg-buildpackage: info: source package python-gffutils
dpkg-buildpackage: info: source version 0.13-2
dpkg-buildpackage: info: source distribution unstable
@@ -1140,50 +1176,50 @@
creating build/scripts-3.13
copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.13
changing mode of build/scripts-3.13/gffutils-cli from 644 to 755
-PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
+PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \
help2man --version-string=0.13 --no-info \
--name="Command line interface for python-gffutils." \
gffutils-cli > debian/gffutils-cli.1
-PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
+PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \
help2man --version-string=0.13 --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_fetch \- Fetch IDs") \
'gffutils-cli fetch' > debian/gffutils-cli-fetch.1
-PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
+PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \
help2man --version-string=0.13 --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_children \- Fetch children from the database according to ID") \
'gffutils-cli children' > debian/gffutils-cli-children.1
-PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
+PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \
help2man --version-string=0.13 --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_parents \- Fetch parents from the database according to ID") \
'gffutils-cli parents' > debian/gffutils-cli-parents.1
-PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
+PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \
help2man --version-string=0.13 --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_region \- Returns features within provided genomic coordinates") \
'gffutils-cli region' > debian/gffutils-cli-region.1
-PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
+PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \
help2man --version-string=0.13 --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_create \- Create a database") \
'gffutils-cli create' > debian/gffutils-cli-create.1
-PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
+PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \
help2man --version-string=0.13 --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_common \- Identify child features in common") \
'gffutils-cli common' > debian/gffutils-cli-common.1
-PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
+PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \
help2man --version-string=0.13 --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_clean \- Perform various QC operations to clean a GFF or GTF file") \
'gffutils-cli clean' > debian/gffutils-cli-clean.1
-PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
+PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \
help2man --version-string=0.13 --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_sanitize \- Sanitize a GFF file") \
'gffutils-cli sanitize' > debian/gffutils-cli-sanitize.1
-PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
+PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \
help2man --version-string=0.13 --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_rmdups \- Remove duplicates from a GFF file") \
'gffutils-cli rmdups' > debian/gffutils-cli-rmdups.1
make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/python-gffutils-0.13'
-PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games dh_auto_test
+PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path dh_auto_test
I: pybuild base:311: cd /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build; python3.12 -m pytest --doctest-modules -m 'not slow'
============================= test session starts ==============================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
@@ -1231,7 +1267,7 @@
warnings.warn(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
-============ 110 passed, 1 skipped, 1 xfailed, 8 warnings in 9.56s =============
+============ 110 passed, 1 skipped, 1 xfailed, 8 warnings in 2.88s =============
I: pybuild pybuild:334: find . -name tmp.db -delete
I: pybuild base:311: cd /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build; python3.13 -m pytest --doctest-modules -m 'not slow'
============================= test session starts ==============================
@@ -1280,7 +1316,7 @@
warnings.warn(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
-============ 110 passed, 1 skipped, 1 xfailed, 8 warnings in 8.38s =============
+============ 110 passed, 1 skipped, 1 xfailed, 8 warnings in 3.09s =============
I: pybuild pybuild:334: find . -name tmp.db -delete
make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13'
create-stamp debian/debhelper-build-stamp
@@ -1726,12 +1762,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/2288987/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/2288987/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/533445 and its subdirectories
-I: Current time: Thu Feb 19 19:00:34 -12 2026
-I: pbuilder-time-stamp: 1771570834
+I: removing directory /srv/workspace/pbuilder/2288987 and its subdirectories
+I: Current time: Fri Feb 20 21:03:01 +14 2026
+I: pbuilder-time-stamp: 1771570981