Diff of the two buildlogs: -- --- b1/build.log 2024-05-18 12:24:37.253012913 +0000 +++ b2/build.log 2024-05-18 12:28:18.375603816 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 18 00:21:17 -12 2024 -I: pbuilder-time-stamp: 1716034877 +I: Current time: Sat Jun 21 08:47:40 +14 2025 +I: pbuilder-time-stamp: 1750445260 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/215615/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1298478/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 20 18:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1298478/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1298478/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='96a7a590853b46058604f5e4ba4c4857' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='215615' - PS1='# ' - PS2='> ' + INVOCATION_ID=7aafa4245b5c42ad9df8a23bd7d0240b + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1298478 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RnLRXkYJ/pbuilderrc_Wk1Y --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RnLRXkYJ/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-10.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RnLRXkYJ/pbuilderrc_kptA --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RnLRXkYJ/b2 --logfile b2/build.log python-csb_1.2.5+dfsg-10.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 17 07:42 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/215615/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 19 14:05 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1298478/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -258,7 +290,7 @@ Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.0-1 [45.5 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.6.3-2 [7978 kB] -Fetched 97.1 MB in 0s (211 MB/s) +Fetched 97.1 MB in 0s (225 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19764 files and directories currently installed.) @@ -700,8 +732,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat May 18 12:21:44 UTC 2024. -Universal Time is now: Sat May 18 12:21:44 UTC 2024. +Local time is now: Fri Jun 20 18:48:06 UTC 2025. +Universal Time is now: Fri Jun 20 18:48:06 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -823,7 +855,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes +I: user script /srv/workspace/pbuilder/1298478/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1298478/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-10 dpkg-buildpackage: info: source distribution unstable @@ -1520,7 +1556,7 @@ testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdj0w5i7x' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6pxor06g' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1641,27 +1677,27 @@ content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgm_kkws9' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmdb_epyi' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5ht0dzlv' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpeei7vt1p' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwug032bz' mode='r' encoding='UTF-8'> +testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzd7tt892' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpg4aj3deg' mode='r' encoding='UTF-8'> +testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf4r6a4ru' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpajr2x0g5' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf4yvedcx' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnuivgscy' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvkwnr6oc' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1673,11 +1709,11 @@ testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwu6qbjl7' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpr09g5xf4' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmppwwg35li' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptdxy5tf_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1707,14 +1743,14 @@ testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmppt90mfj5' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkk45uhy2' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) -@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqrv04v7s' mode='r' encoding='UTF-8'> +@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8_xhyhn2' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1897,10 +1933,10 @@ testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvpznh79e' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkg5sowrk' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpunpdf8kt' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpd1i2hopz' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1916,10 +1952,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpki6_gxmy' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqigp4sqh' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpv_p9z3r0' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpd5ool7cb' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1935,10 +1971,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7oakjfh9' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnzyogxab' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2nizw4er' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpggpdy5n6' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1965,10 +2001,10 @@ testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5l1_rv0c' mode='r' encoding='UTF-8'> +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgg638q33' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp41jv7_er' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdehnb12j' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2077,10 +2113,10 @@ testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_wz70pas' mode='r' encoding='UTF-8'> +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp09s8plpx' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2p8pfgjq' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp273tlu21' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2146,7 +2182,7 @@ testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyepueh4g' mode='r' encoding='UTF-8'> +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpw4eax1kt' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2163,15 +2199,15 @@ testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp33jmaicy' mode='r' encoding='UTF-8'> +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5db9_ni2' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbx9288wt' mode='r' encoding='UTF-8'> +testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpq0ma0vnv' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxx5tncnh' mode='r' encoding='UTF-8'> +testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbx0ff23c' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2187,7 +2223,7 @@ testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpk9adnt2_' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp56l1pw2m' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2202,7 +2238,7 @@ testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok -testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpu8ghj7pz' mode='r' encoding='UTF-8'> +testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpko2foxfg' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2434,7 +2470,7 @@ AssertionError: RuntimeError not raised ---------------------------------------------------------------------- -Ran 697 tests in 50.362s +Ran 697 tests in 48.780s FAILED (failures=2, errors=5, skipped=6) I: pybuild base:311: set -e; \ @@ -2529,7 +2565,7 @@ testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3vy8pdht' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptd0cnhsl' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2650,27 +2686,27 @@ content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpm2ivpgyk' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphla2fwc3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqbxzzzg1' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1_c3vka2' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpy3etg74s' mode='r' encoding='UTF-8'> +testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsthywngd' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpni2z7n09' mode='r' encoding='UTF-8'> +testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxlu6lddr' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp00n8ym77' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplp_79meu' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgkudzagm' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp16u18heb' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2682,11 +2718,11 @@ testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpeena5y_p' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1ej8o5b5' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpy_wo5aq_' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5trr9cgm' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2716,14 +2752,14 @@ testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpi6fh7608' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpiqu6aj2p' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) -@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcby2mehp' mode='r' encoding='UTF-8'> +@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpb848sn8t' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2906,10 +2942,10 @@ testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqjcr89o_' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmppntkd88n' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp197lmzsd' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpm1tjzeql' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2925,10 +2961,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3rsz62lb' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpasx7qxs8' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxa5md9ht' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5742af27' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2944,10 +2980,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpy7l3o0ns' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4g9lmvxc' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp60fcokd5' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpc4t78auq' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2974,10 +3010,10 @@ testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpafmcwlqc' mode='r' encoding='UTF-8'> +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmzl_ptpe' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmryrwejr' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7sls_sa0' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3086,10 +3122,10 @@ testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp68v5n7li' mode='r' encoding='UTF-8'> +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph2vphsb1' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpz5b2s4j8' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmk7c_p3t' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3157,7 +3193,7 @@ testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphd4yeibf' mode='r' encoding='UTF-8'> +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpq6vjzy44' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3174,15 +3210,15 @@ testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpb2y065ot' mode='r' encoding='UTF-8'> +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphgq13t61' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdfry51jj' mode='r' encoding='UTF-8'> +testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmppov0gw_v' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptc0ylkr0' mode='r' encoding='UTF-8'> +testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfme3uad7' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3198,7 +3234,7 @@ testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpt777riu6' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfksh_bnl' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3213,7 +3249,7 @@ testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok -testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4lwtu713' mode='r' encoding='UTF-8'> +testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpd1zc_m5v' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3440,7 +3476,7 @@ AssertionError: True is not false ---------------------------------------------------------------------- -Ran 697 tests in 55.009s +Ran 697 tests in 66.686s FAILED (failures=1, errors=4, skipped=6) make[1]: Leaving directory '/build/reproducible-path/python-csb-1.2.5+dfsg' @@ -4558,8 +4594,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-10_all.deb'. dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-10_all.deb'. +dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-10_all.deb'. dpkg-genbuildinfo --build=binary -O../python-csb_1.2.5+dfsg-10_arm64.buildinfo dpkg-genchanges --build=binary -O../python-csb_1.2.5+dfsg-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4567,12 +4603,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1298478/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1298478/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/215615 and its subdirectories -I: Current time: Sat May 18 00:24:36 -12 2024 -I: pbuilder-time-stamp: 1716035076 +I: removing directory /srv/workspace/pbuilder/1298478 and its subdirectories +I: Current time: Sat Jun 21 08:51:16 +14 2025 +I: pbuilder-time-stamp: 1750445476