Diff of the two buildlogs: -- --- b1/build.log 2024-11-30 06:25:32.717760317 +0000 +++ b2/build.log 2024-11-30 06:50:39.045790438 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jan 2 00:10:00 -12 2026 -I: pbuilder-time-stamp: 1767355800 +I: Current time: Sat Nov 30 20:25:36 +14 2024 +I: pbuilder-time-stamp: 1732947936 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -35,52 +35,84 @@ dpkg-source: info: applying fix-type-cast-i386.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1814912/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3720380/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 30 06:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3720380/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3720380/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='265d15a9348546bfba3a3b2e793582c2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1814912' - PS1='# ' - PS2='> ' + INVOCATION_ID=79979fe038874e17ae38ce8c6800c23c + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3720380 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w74S6Eey/pbuilderrc_xgq4 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w74S6Eey/b1 --logfile b1/build.log python-biopython_1.84+dfsg-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w74S6Eey/pbuilderrc_RAjX --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w74S6Eey/b2 --logfile b2/build.log python-biopython_1.84+dfsg-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1814912/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3720380/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -501,7 +533,7 @@ Get: 314 http://deb.debian.org/debian unstable/main arm64 texlive-latex-extra all 2024.20241115-1 [24.6 MB] Get: 315 http://deb.debian.org/debian unstable/main arm64 wise-data all 2.4.1-25 [76.1 kB] Get: 316 http://deb.debian.org/debian unstable/main arm64 wise arm64 2.4.1-25 [1007 kB] -Fetched 365 MB in 4s (95.9 MB/s) +Fetched 365 MB in 2s (231 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) @@ -1525,8 +1557,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Jan 2 12:11:33 UTC 2026. -Universal Time is now: Fri Jan 2 12:11:33 UTC 2026. +Local time is now: Sat Nov 30 06:26:24 UTC 2024. +Universal Time is now: Sat Nov 30 06:26:24 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1857,7 +1889,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-biopython-1.84+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-biopython_1.84+dfsg-4_source.changes +I: user script /srv/workspace/pbuilder/3720380/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3720380/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-biopython-1.84+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-biopython_1.84+dfsg-4_source.changes dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.84+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -3772,293 +3808,293 @@ making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: Tutorial/chapter_align.rst, Tutorial/chapter_appendix.rst, Tutorial/chapter_bibliography.rst, Tutorial/chapter_blast.rst, Tutorial/chapter_cluster.rst, Tutorial/chapter_contributing.rst, Tutorial/chapter_cookbook.rst, Tutorial/chapter_entrez.rst, Tutorial/chapter_graphics.rst, Tutorial/chapter_introduction.rst, ..., Tutorial/chapter_quick_start.rst, Tutorial/chapter_searchio.rst, Tutorial/chapter_seq_annot.rst, Tutorial/chapter_seq_objects.rst, Tutorial/chapter_seqio.rst, Tutorial/chapter_testing.rst, Tutorial/chapter_uniprot.rst, Tutorial/index.rst, api/index.rst, index.rst -Creating file /tmp/tmpmai649ro/BioSQL.rst. -Creating file /tmp/tmpmai649ro/BioSQL.BioSeq.rst. -Creating file /tmp/tmpmai649ro/BioSQL.BioSeqDatabase.rst. -Creating file /tmp/tmpmai649ro/BioSQL.DBUtils.rst. -Creating file /tmp/tmpmai649ro/BioSQL.Loader.rst. -Creating file /tmp/tmpmai649ro/conf.py. -Creating file /tmp/tmpmai649ro/index.rst. -Creating file /tmp/tmpmai649ro/Makefile. -Creating file /tmp/tmpmai649ro/make.bat. -Creating file /tmp/tmpmai649ro/Bio.rst. -Creating file /tmp/tmpmai649ro/Bio.File.rst. -Creating file /tmp/tmpmai649ro/Bio.LogisticRegression.rst. -Creating file /tmp/tmpmai649ro/Bio.MarkovModel.rst. -Creating file /tmp/tmpmai649ro/Bio.MaxEntropy.rst. -Creating file /tmp/tmpmai649ro/Bio.NaiveBayes.rst. -Creating file /tmp/tmpmai649ro/Bio.Seq.rst. -Creating file /tmp/tmpmai649ro/Bio.SeqFeature.rst. -Creating file /tmp/tmpmai649ro/Bio.SeqRecord.rst. -Creating file /tmp/tmpmai649ro/Bio.bgzf.rst. -Creating file /tmp/tmpmai649ro/Bio.kNN.rst. -Creating file /tmp/tmpmai649ro/Bio.pairwise2.rst. -Creating file /tmp/tmpmai649ro/Bio.Affy.rst. -Creating file /tmp/tmpmai649ro/Bio.Affy.CelFile.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.AlignInfo.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.a2m.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.analysis.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.bed.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.bigbed.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.bigmaf.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.bigpsl.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.chain.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.clustal.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.emboss.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.exonerate.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.fasta.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.hhr.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.interfaces.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.maf.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.mauve.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.msf.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.nexus.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.phylip.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.psl.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.sam.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.stockholm.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.tabular.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.Applications.rst. -Creating file /tmp/tmpmai649ro/Bio.Align.substitution_matrices.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.ClustalIO.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.EmbossIO.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.FastaIO.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.Interfaces.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.MafIO.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.MauveIO.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.MsfIO.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.NexusIO.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.PhylipIO.rst. -Creating file /tmp/tmpmai649ro/Bio.AlignIO.StockholmIO.rst. -Creating file /tmp/tmpmai649ro/Bio.Application.rst. -Creating file /tmp/tmpmai649ro/Bio.Blast.rst. -Creating file /tmp/tmpmai649ro/Bio.Blast.Applications.rst. -Creating file /tmp/tmpmai649ro/Bio.Blast.NCBIWWW.rst. -Creating file /tmp/tmpmai649ro/Bio.Blast.NCBIXML.rst. -Creating file /tmp/tmpmai649ro/Bio.CAPS.rst. -Creating file /tmp/tmpmai649ro/Bio.Cluster.rst. -Creating file /tmp/tmpmai649ro/Bio.Compass.rst. -Creating file /tmp/tmpmai649ro/Bio.Data.rst. -Creating file /tmp/tmpmai649ro/Bio.Data.CodonTable.rst. -Creating file /tmp/tmpmai649ro/Bio.Data.IUPACData.rst. -Creating file /tmp/tmpmai649ro/Bio.Data.PDBData.rst. -Creating file /tmp/tmpmai649ro/Bio.Emboss.rst. -Creating file /tmp/tmpmai649ro/Bio.Emboss.Applications.rst. -Creating file /tmp/tmpmai649ro/Bio.Emboss.Primer3.rst. -Creating file /tmp/tmpmai649ro/Bio.Emboss.PrimerSearch.rst. -Creating file /tmp/tmpmai649ro/Bio.Entrez.rst. -Creating file /tmp/tmpmai649ro/Bio.Entrez.Parser.rst. -Creating file /tmp/tmpmai649ro/Bio.ExPASy.rst. -Creating file /tmp/tmpmai649ro/Bio.ExPASy.Enzyme.rst. -Creating file /tmp/tmpmai649ro/Bio.ExPASy.Prodoc.rst. -Creating file /tmp/tmpmai649ro/Bio.ExPASy.Prosite.rst. -Creating file /tmp/tmpmai649ro/Bio.ExPASy.ScanProsite.rst. -Creating file /tmp/tmpmai649ro/Bio.ExPASy.cellosaurus.rst. -Creating file /tmp/tmpmai649ro/Bio.GenBank.rst. -Creating file /tmp/tmpmai649ro/Bio.GenBank.Record.rst. -Creating file /tmp/tmpmai649ro/Bio.GenBank.Scanner.rst. -Creating file /tmp/tmpmai649ro/Bio.GenBank.utils.rst. -Creating file /tmp/tmpmai649ro/Bio.Geo.rst. -Creating file /tmp/tmpmai649ro/Bio.Geo.Record.rst. -Creating file /tmp/tmpmai649ro/Bio.Graphics.rst. -Creating file /tmp/tmpmai649ro/Bio.Graphics.BasicChromosome.rst. -Creating file /tmp/tmpmai649ro/Bio.Graphics.ColorSpiral.rst. -Creating file /tmp/tmpmai649ro/Bio.Graphics.Comparative.rst. -Creating file /tmp/tmpmai649ro/Bio.Graphics.DisplayRepresentation.rst. -Creating file /tmp/tmpmai649ro/Bio.Graphics.Distribution.rst. -Creating file /tmp/tmpmai649ro/Bio.Graphics.KGML_vis.rst. -Creating file /tmp/tmpmai649ro/Bio.Graphics.GenomeDiagram.rst. -Creating file /tmp/tmpmai649ro/Bio.HMM.rst. -Creating file /tmp/tmpmai649ro/Bio.HMM.DynamicProgramming.rst. -Creating file /tmp/tmpmai649ro/Bio.HMM.MarkovModel.rst. -Creating file /tmp/tmpmai649ro/Bio.HMM.Trainer.rst. -Creating file /tmp/tmpmai649ro/Bio.HMM.Utilities.rst. -Creating file /tmp/tmpmai649ro/Bio.KEGG.rst. -Creating file /tmp/tmpmai649ro/Bio.KEGG.REST.rst. -Creating file /tmp/tmpmai649ro/Bio.KEGG.Compound.rst. -Creating file /tmp/tmpmai649ro/Bio.KEGG.Enzyme.rst. -Creating file /tmp/tmpmai649ro/Bio.KEGG.Gene.rst. -Creating file /tmp/tmpmai649ro/Bio.KEGG.KGML.rst. -Creating file /tmp/tmpmai649ro/Bio.KEGG.KGML.KGML_parser.rst. -Creating file /tmp/tmpmai649ro/Bio.KEGG.KGML.KGML_pathway.rst. -Creating file /tmp/tmpmai649ro/Bio.KEGG.Map.rst. -Creating file /tmp/tmpmai649ro/Bio.Medline.rst. -Creating file /tmp/tmpmai649ro/Bio.NMR.rst. -Creating file /tmp/tmpmai649ro/Bio.NMR.NOEtools.rst. -Creating file /tmp/tmpmai649ro/Bio.NMR.xpktools.rst. -Creating file /tmp/tmpmai649ro/Bio.Nexus.rst. -Creating file /tmp/tmpmai649ro/Bio.Nexus.Nexus.rst. -Creating file /tmp/tmpmai649ro/Bio.Nexus.Nodes.rst. -Creating file /tmp/tmpmai649ro/Bio.Nexus.StandardData.rst. -Creating file /tmp/tmpmai649ro/Bio.Nexus.Trees.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.AbstractPropertyMap.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.Atom.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.Chain.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.DSSP.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.Dice.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.Entity.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.FragmentMapper.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.HSExposure.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.MMCIF2Dict.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.MMCIFParser.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.Model.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.NACCESS.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.NeighborSearch.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.PDBExceptions.rst. -Creating file 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/tmp/tmpmai649ro/Bio.PDB.cealign.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.ic_data.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.ic_rebuild.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.internal_coords.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.mmcifio.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.parse_pdb_header.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.qcprot.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.vectors.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.mmtf.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.mmtf.DefaultParser.rst. -Creating file /tmp/tmpmai649ro/Bio.PDB.mmtf.mmtfio.rst. -Creating file /tmp/tmpmai649ro/Bio.Pathway.rst. -Creating file /tmp/tmpmai649ro/Bio.Pathway.Rep.rst. -Creating file /tmp/tmpmai649ro/Bio.Pathway.Rep.Graph.rst. -Creating file /tmp/tmpmai649ro/Bio.Pathway.Rep.MultiGraph.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.BaseTree.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.CDAO.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.CDAOIO.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.Consensus.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.NeXML.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.NeXMLIO.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.Newick.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.NewickIO.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.NexusIO.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.PhyloXML.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.PhyloXMLIO.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.TreeConstruction.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.Applications.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.PAML.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.PAML.baseml.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.PAML.chi2.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.PAML.codeml.rst. -Creating file /tmp/tmpmai649ro/Bio.Phylo.PAML.yn00.rst. -Creating file /tmp/tmpmai649ro/Bio.PopGen.rst. -Creating file /tmp/tmpmai649ro/Bio.PopGen.GenePop.rst. -Creating file /tmp/tmpmai649ro/Bio.PopGen.GenePop.Controller.rst. -Creating file /tmp/tmpmai649ro/Bio.PopGen.GenePop.EasyController.rst. -Creating file /tmp/tmpmai649ro/Bio.PopGen.GenePop.FileParser.rst. -Creating file /tmp/tmpmai649ro/Bio.PopGen.GenePop.LargeFileParser.rst. -Creating file /tmp/tmpmai649ro/Bio.Restriction.rst. -Creating file /tmp/tmpmai649ro/Bio.Restriction.PrintFormat.rst. -Creating file /tmp/tmpmai649ro/Bio.Restriction.Restriction_Dictionary.rst. -Creating file /tmp/tmpmai649ro/Bio.SCOP.rst. -Creating file /tmp/tmpmai649ro/Bio.SCOP.Cla.rst. -Creating file /tmp/tmpmai649ro/Bio.SCOP.Des.rst. -Creating file /tmp/tmpmai649ro/Bio.SCOP.Dom.rst. -Creating file /tmp/tmpmai649ro/Bio.SCOP.Hie.rst. -Creating file /tmp/tmpmai649ro/Bio.SCOP.Raf.rst. -Creating file /tmp/tmpmai649ro/Bio.SCOP.Residues.rst. -Creating file /tmp/tmpmai649ro/Bio.SVDSuperimposer.rst. -Creating file /tmp/tmpmai649ro/Bio.SearchIO.rst. -Creating file /tmp/tmpmai649ro/Bio.SearchIO.BlatIO.rst. -Creating file 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/tmp/tmpmai649ro/Bio.motifs.pfm.rst. -Creating file /tmp/tmpmai649ro/Bio.motifs.thresholds.rst. -Creating file /tmp/tmpmai649ro/Bio.motifs.transfac.rst. -Creating file /tmp/tmpmai649ro/Bio.motifs.xms.rst. -Creating file /tmp/tmpmai649ro/Bio.motifs.applications.rst. -Creating file /tmp/tmpmai649ro/Bio.motifs.jaspar.rst. -Creating file /tmp/tmpmai649ro/Bio.motifs.jaspar.db.rst. -Creating file /tmp/tmpmai649ro/Bio.phenotype.rst. -Creating file /tmp/tmpmai649ro/Bio.phenotype.phen_micro.rst. -Creating file /tmp/tmpmai649ro/Bio.phenotype.pm_fitting.rst. -File /tmp/tmpmai649ro/conf.py already exists, skipping. -File /tmp/tmpmai649ro/index.rst already exists, skipping. -File /tmp/tmpmai649ro/Makefile already exists, skipping. -File /tmp/tmpmai649ro/make.bat already exists, skipping. +Creating file /tmp/tmp8v44qh_1/BioSQL.rst. +Creating file /tmp/tmp8v44qh_1/BioSQL.BioSeq.rst. +Creating file /tmp/tmp8v44qh_1/BioSQL.BioSeqDatabase.rst. +Creating file /tmp/tmp8v44qh_1/BioSQL.DBUtils.rst. +Creating file /tmp/tmp8v44qh_1/BioSQL.Loader.rst. +Creating file /tmp/tmp8v44qh_1/conf.py. +Creating file /tmp/tmp8v44qh_1/index.rst. +Creating file /tmp/tmp8v44qh_1/Makefile. +Creating file /tmp/tmp8v44qh_1/make.bat. +Creating file /tmp/tmp8v44qh_1/Bio.rst. +Creating file /tmp/tmp8v44qh_1/Bio.File.rst. +Creating file /tmp/tmp8v44qh_1/Bio.LogisticRegression.rst. +Creating file /tmp/tmp8v44qh_1/Bio.MarkovModel.rst. +Creating file /tmp/tmp8v44qh_1/Bio.MaxEntropy.rst. +Creating file /tmp/tmp8v44qh_1/Bio.NaiveBayes.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Seq.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqFeature.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqRecord.rst. +Creating file /tmp/tmp8v44qh_1/Bio.bgzf.rst. +Creating file /tmp/tmp8v44qh_1/Bio.kNN.rst. +Creating file /tmp/tmp8v44qh_1/Bio.pairwise2.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Affy.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Affy.CelFile.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Align.rst. +Creating file 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+Creating file /tmp/tmp8v44qh_1/Bio.Graphics.Distribution.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Graphics.KGML_vis.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Graphics.GenomeDiagram.rst. +Creating file /tmp/tmp8v44qh_1/Bio.HMM.rst. +Creating file /tmp/tmp8v44qh_1/Bio.HMM.DynamicProgramming.rst. +Creating file /tmp/tmp8v44qh_1/Bio.HMM.MarkovModel.rst. +Creating file /tmp/tmp8v44qh_1/Bio.HMM.Trainer.rst. +Creating file /tmp/tmp8v44qh_1/Bio.HMM.Utilities.rst. +Creating file /tmp/tmp8v44qh_1/Bio.KEGG.rst. +Creating file /tmp/tmp8v44qh_1/Bio.KEGG.REST.rst. +Creating file /tmp/tmp8v44qh_1/Bio.KEGG.Compound.rst. +Creating file /tmp/tmp8v44qh_1/Bio.KEGG.Enzyme.rst. +Creating file /tmp/tmp8v44qh_1/Bio.KEGG.Gene.rst. +Creating file /tmp/tmp8v44qh_1/Bio.KEGG.KGML.rst. +Creating file /tmp/tmp8v44qh_1/Bio.KEGG.KGML.KGML_parser.rst. +Creating file /tmp/tmp8v44qh_1/Bio.KEGG.KGML.KGML_pathway.rst. +Creating file /tmp/tmp8v44qh_1/Bio.KEGG.Map.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Medline.rst. +Creating file /tmp/tmp8v44qh_1/Bio.NMR.rst. +Creating file /tmp/tmp8v44qh_1/Bio.NMR.NOEtools.rst. +Creating file /tmp/tmp8v44qh_1/Bio.NMR.xpktools.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Nexus.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Nexus.Nexus.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Nexus.Nodes.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Nexus.StandardData.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Nexus.Trees.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PDB.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PDB.AbstractPropertyMap.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PDB.Atom.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PDB.Chain.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PDB.DSSP.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PDB.Dice.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PDB.Entity.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PDB.FragmentMapper.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PDB.HSExposure.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PDB.MMCIF2Dict.rst. +Creating file 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+Creating file /tmp/tmp8v44qh_1/Bio.Pathway.Rep.Graph.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Pathway.Rep.MultiGraph.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.BaseTree.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.CDAO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.CDAOIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.Consensus.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.NeXML.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.NeXMLIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.Newick.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.NewickIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.NexusIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.PhyloXML.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.PhyloXMLIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.TreeConstruction.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.Applications.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.PAML.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.PAML.baseml.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.PAML.chi2.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.PAML.codeml.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Phylo.PAML.yn00.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PopGen.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PopGen.GenePop.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PopGen.GenePop.Controller.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PopGen.GenePop.EasyController.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PopGen.GenePop.FileParser.rst. +Creating file /tmp/tmp8v44qh_1/Bio.PopGen.GenePop.LargeFileParser.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Restriction.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Restriction.PrintFormat.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Restriction.Restriction_Dictionary.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SCOP.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SCOP.Cla.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SCOP.Des.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SCOP.Dom.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SCOP.Hie.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SCOP.Raf.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SCOP.Residues.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SVDSuperimposer.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.BlatIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.FastaIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.BlastIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.BlastIO.blast_tab.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.BlastIO.blast_xml.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.ExonerateIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.ExonerateIO.exonerate_cigar.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.ExonerateIO.exonerate_text.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.ExonerateIO.exonerate_vulgar.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.HHsuiteIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.HHsuiteIO.hhsuite2_text.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.HmmerIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.HmmerIO.hmmer2_text.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.HmmerIO.hmmer3_domtab.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.HmmerIO.hmmer3_tab.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.HmmerIO.hmmer3_text.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.InterproscanIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SearchIO.InterproscanIO.interproscan_xml.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.AbiIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.AceIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.FastaIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.GckIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.GfaIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.IgIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.InsdcIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.Interfaces.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.NibIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.PdbIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.PhdIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.PirIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.QualityIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.SeqXmlIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.SffIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.SnapGeneIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.SwissIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.TabIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.TwoBitIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.UniprotIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqIO.XdnaIO.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqUtils.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqUtils.CheckSum.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqUtils.IsoelectricPoint.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqUtils.MeltingTemp.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqUtils.ProtParam.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqUtils.ProtParamData.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SeqUtils.lcc.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Sequencing.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Sequencing.Ace.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Sequencing.Phd.rst. +Creating file /tmp/tmp8v44qh_1/Bio.Sequencing.Applications.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SwissProt.rst. +Creating file /tmp/tmp8v44qh_1/Bio.SwissProt.KeyWList.rst. +Creating file /tmp/tmp8v44qh_1/Bio.TogoWS.rst. +Creating file /tmp/tmp8v44qh_1/Bio.UniGene.rst. +Creating file /tmp/tmp8v44qh_1/Bio.UniProt.rst. +Creating file /tmp/tmp8v44qh_1/Bio.UniProt.GOA.rst. +Creating file /tmp/tmp8v44qh_1/Bio.codonalign.rst. +Creating file /tmp/tmp8v44qh_1/Bio.codonalign.codonalignment.rst. +Creating file /tmp/tmp8v44qh_1/Bio.codonalign.codonseq.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.alignace.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.clusterbuster.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.mast.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.matrix.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.meme.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.minimal.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.pfm.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.thresholds.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.transfac.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.xms.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.applications.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.jaspar.rst. +Creating file /tmp/tmp8v44qh_1/Bio.motifs.jaspar.db.rst. +Creating file /tmp/tmp8v44qh_1/Bio.phenotype.rst. +Creating file /tmp/tmp8v44qh_1/Bio.phenotype.phen_micro.rst. +Creating file /tmp/tmp8v44qh_1/Bio.phenotype.pm_fitting.rst. +File /tmp/tmp8v44qh_1/conf.py already exists, skipping. +File /tmp/tmp8v44qh_1/index.rst already exists, skipping. +File /tmp/tmp8v44qh_1/Makefile already exists, skipping. +File /tmp/tmp8v44qh_1/make.bat already exists, skipping. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 29 source files that are out of date @@ -5424,7 +5460,7 @@ BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- -Ran 550 tests in 943.746 seconds +Ran 550 tests in 522.977 seconds Skipping any tests requiring internet access Python version: 3.13.0 (main, Nov 12 2024, 09:54:22) [GCC 14.2.0] @@ -6043,12 +6079,12 @@ BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- -Ran 550 tests in 691.400 seconds +Ran 550 tests in 535.876 seconds Skipping any tests requiring internet access Python version: 3.12.7 (main, Nov 8 2024, 17:55:36) [GCC 14.2.0] Operating system: posix linux - rm -fr -- /tmp/dh-xdg-rundir-gGq3_CuU + rm -fr -- /tmp/dh-xdg-rundir-pe6HhPTl # Cleanup steps after tests. set -e \ ; if [ -d Tests_avoid ] \ @@ -6228,8 +6264,8 @@ running install_lib creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.13/dist-packages/Tests -creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.13/dist-packages/Tests/tmpdirprankmsa3fkE6d -creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.13/dist-packages/Tests/tmpdirprankmsaT4ToBj +creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.13/dist-packages/Tests/tmpdirprankmsa0ghfBH +creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.13/dist-packages/Tests/tmpdirprankmsavZDu2f copying /build/reproducible-path/python-biopython-1.84+dfsg/.pybuild/cpython3_3.13/build/Tests/output.best.nex -> /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.13/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.84+dfsg/.pybuild/cpython3_3.13/build/Tests/output.best.fas -> /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.13/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.13/dist-packages/Tests/__pycache__ @@ -10152,8 +10188,8 @@ running install_lib creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.12/dist-packages/Tests -creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.12/dist-packages/Tests/tmpdirprankmsaISVW6N -creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.12/dist-packages/Tests/tmpdirprankmsa8oog0n +creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.12/dist-packages/Tests/tmpdirprankmsa7lWQpd +creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.12/dist-packages/Tests/tmpdirprankmsa742Iqi copying /build/reproducible-path/python-biopython-1.84+dfsg/.pybuild/cpython3_3.12/build/Tests/output.best.nex -> /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.84+dfsg/.pybuild/cpython3_3.12/build/Tests/output.best.fas -> /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.84+dfsg/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ @@ -14006,12 +14042,12 @@ install -p -m0644 debian/TODO debian/python3-biopython/usr/share/doc/python3-biopython/TODO.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -O--buildsystem=pybuild - install -m0755 -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc - install -p -m0644 debian/.debhelper/generated/python-biopython-doc/dh_installchangelogs.dch.trimmed debian/python-biopython-doc/usr/share/doc/python-biopython-doc/changelog.Debian - install -p -m0644 debian/.debhelper/generated/python-biopython-doc/dh_installchangelogs.news.trimmed debian/python-biopython-doc/usr/share/doc/python-biopython-doc/NEWS.Debian install -m0755 -d debian/python3-biopython/usr/share/doc/python3-biopython install -p -m0644 debian/.debhelper/generated/python3-biopython/dh_installchangelogs.dch.trimmed debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian install -p -m0644 debian/.debhelper/generated/python3-biopython/dh_installchangelogs.news.trimmed debian/python3-biopython/usr/share/doc/python3-biopython/NEWS.Debian + install -m0755 -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc + install -p -m0644 debian/.debhelper/generated/python-biopython-doc/dh_installchangelogs.dch.trimmed debian/python-biopython-doc/usr/share/doc/python-biopython-doc/changelog.Debian + install -p -m0644 debian/.debhelper/generated/python-biopython-doc/dh_installchangelogs.news.trimmed debian/python-biopython-doc/usr/share/doc/python-biopython-doc/NEWS.Debian install -m0755 -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql install -p -m0644 debian/.debhelper/generated/python3-biopython-sql/dh_installchangelogs.dch.trimmed debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/changelog.Debian install -p -m0644 debian/.debhelper/generated/python3-biopython-sql/dh_installchangelogs.news.trimmed debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/NEWS.Debian @@ -14086,52 +14122,52 @@ ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_static/searchtools.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1730321142 as canonical time + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/PDB/1gbt.bcif.gz using File::StripNondeterminism::handlers::gzip + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Fasta/flowers.pro.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/three_track_simple.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/simple_chrom.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/plasmid_linear_nice.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/plasmid_linear.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/plasmid_circular_nice.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/three_track_cl2a.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/three_track_cl.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/tRNA_chrom.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/smcra.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/plasmid_circular.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/phylo-simple-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/phylo-draw-example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/phylo-color-draw.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/PDB/1gbt.bcif.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Fasta/flowers.pro.gz using File::StripNondeterminism::handlers::gzip + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/examples/ls_orchid.gbk.gz using File::StripNondeterminism::handlers::gzip + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz using File::StripNondeterminism::handlers::gzip + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/PDB/6wg6.bcif.gz using File::StripNondeterminism::handlers::gzip + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/PDB/3jqh.bcif.gz using File::StripNondeterminism::handlers::gzip + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/GD_sigils.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/GD_sigil_labels.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/GD_sigil_arrow_shafts.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/GD_sigil_arrow_heads.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/dot_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/biopython_logo_m.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/SRR001666.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/PSIBlastRecord.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/three_track_cl2a.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/three_track_cl.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/tRNA_chrom.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/smcra.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/phe-pairs-3pbl.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/hist_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/gc_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/dot_plot_scatter.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/BlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/1a8o-ca-plot.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/simple_chrom.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/plasmid_linear_nice.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/plasmid_linear.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/plasmid_circular_nice.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/GD_sigils.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/GD_sigil_labels.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/GD_sigil_arrow_shafts.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/html/_images/GD_sigil_arrow_heads.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/examples/ls_orchid.gbk.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/PDB/6wg6.bcif.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/PDB/3jqh.bcif.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild - cd debian/python3-biopython-sql cd debian/python3-biopython cd debian/python-biopython-doc - chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.Debian usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian + cd debian/python3-biopython-sql chmod a-x usr/share/doc/python3-biopython-sql/NEWS.Debian usr/share/doc/python3-biopython-sql/changelog.Debian - gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.Debian usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian + chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.Debian usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython-sql/NEWS.Debian usr/share/doc/python3-biopython-sql/changelog.Debian + gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.Debian usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian cd '/build/reproducible-path/python-biopython-1.84+dfsg' cd '/build/reproducible-path/python-biopython-1.84+dfsg' chmod a-x usr/share/doc/python-biopython-doc/NEWS.Debian usr/share/doc/python-biopython-doc/Tests/Abi/310.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3100.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3730.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/A6_1-DB3.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/empty.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/no_smpl1.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/nonascii_encoding.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/test.fsa usr/share/doc/python-biopython-doc/Tests/Abi/test_data usr/share/doc/python-biopython-doc/Tests/Ace/consed_sample.ace usr/share/doc/python-biopython-doc/Tests/Ace/contig1.ace usr/share/doc/python-biopython-doc/Tests/Ace/seq.cap.ace 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usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_20_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_22_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_24_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_006.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_007.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_008.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_009.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_010.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_011.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_003.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_phmmer_001.out usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/TAT_mase_nuc.txt usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/VIF_mase-pro.txt usr/share/doc/python-biopython-doc/Tests/InterProScan/test_001.xml usr/share/doc/python-biopython-doc/Tests/KEGG/compound.sample usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.4letter usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.sample usr/share/doc/python-biopython-doc/Tests/KEGG/ko00010.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko00253.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko01100.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko03070.xml usr/share/doc/python-biopython-doc/Tests/KEGG/map00950.rea usr/share/doc/python-biopython-doc/Tests/MAF/bundle_without_target.bb usr/share/doc/python-biopython-doc/Tests/MAF/corrupt.idx usr/share/doc/python-biopython-doc/Tests/MAF/humor.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.bb usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_test.bb usr/share/doc/python-biopython-doc/Tests/MAF/unfinished.idx usr/share/doc/python-biopython-doc/Tests/MAF/wrong_version.idx usr/share/doc/python-biopython-doc/Tests/Mauve/simple.fa usr/share/doc/python-biopython-doc/Tests/Mauve/simple.xmfa usr/share/doc/python-biopython-doc/Tests/Medline/pubmed_result2.txt usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta4.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta6.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta7.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta8.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta2.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta9.out usr/share/doc/python-biopython-doc/Tests/NBRF/B_nuc.pir @@ -14145,21 +14181,21 @@ debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/python-biopython-1.84+dfsg' dh_fixperms - find debian/python-biopython-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/python-biopython-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/python-biopython-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/python3-biopython/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/python-biopython-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/python-biopython-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/python3-biopython/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/python-biopython-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/python-biopython-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/python-biopython-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' @@ -14181,16 +14217,16 @@ chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/40/e166b12d24251b0602b604bbece6ff0cad18a8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/40/e166b12d24251b0602b604bbece6ff0cad18a8.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a0 - objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a0/2037bc6d10e9a2fed606cb4525f03fef579821.debug - chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a0/2037bc6d10e9a2fed606cb4525f03fef579821.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a0/2037bc6d10e9a2fed606cb4525f03fef579821.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2c/e99cc56f6a858d5d5839700e9bdb2be7b710bf.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2c/e99cc56f6a858d5d5839700e9bdb2be7b710bf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2c/e99cc56f6a858d5d5839700e9bdb2be7b710bf.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-313-aarch64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a0 + objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a0/2037bc6d10e9a2fed606cb4525f03fef579821.debug + chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a0/2037bc6d10e9a2fed606cb4525f03fef579821.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a0/2037bc6d10e9a2fed606cb4525f03fef579821.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/fd objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/fd/7645d2561e3785d4720fa3db9a62a16002b259.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/fd/7645d2561e3785d4720fa3db9a62a16002b259.debug @@ -14211,16 +14247,16 @@ chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/07/7ade2dd04611126cf1fa84604e695d7b9c6c4f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/07/7ade2dd04611126cf1fa84604e695d7b9c6c4f.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf - objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf/a1e9cc16bdb64cb6a7e8662fcc2581505e494a.debug - chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf/a1e9cc16bdb64cb6a7e8662fcc2581505e494a.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-313-aarch64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf/a1e9cc16bdb64cb6a7e8662fcc2581505e494a.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/07 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/07/21f21cdc8cdb95c70ed651a6757c88c5852775.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/07/21f21cdc8cdb95c70ed651a6757c88c5852775.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/07/21f21cdc8cdb95c70ed651a6757c88c5852775.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf + objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf/a1e9cc16bdb64cb6a7e8662fcc2581505e494a.debug + chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf/a1e9cc16bdb64cb6a7e8662fcc2581505e494a.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-313-aarch64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf/a1e9cc16bdb64cb6a7e8662fcc2581505e494a.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/96 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/96/8dbdd215b20a64f4d4814f7c30450470e97679.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/96/8dbdd215b20a64f4d4814f7c30450470e97679.debug @@ -14241,16 +14277,16 @@ chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ed/a1f28b94f9d12e6ad409d1c228770008eb79c3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/_bcif_helper.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ed/a1f28b94f9d12e6ad409d1c228770008eb79c3.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/_bcif_helper.cpython-312-aarch64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/37 - objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/37/b6d3705f6ca6e9ab62ad136bd1597d7283b039.debug - chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/37/b6d3705f6ca6e9ab62ad136bd1597d7283b039.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/37/b6d3705f6ca6e9ab62ad136bd1597d7283b039.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/41 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/41/2e7cd3e9319a3102cadd171d892dd62d7282c7.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/41/2e7cd3e9319a3102cadd171d892dd62d7282c7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/41/2e7cd3e9319a3102cadd171d892dd62d7282c7.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-313-aarch64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/37 + objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/37/b6d3705f6ca6e9ab62ad136bd1597d7283b039.debug + chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/37/b6d3705f6ca6e9ab62ad136bd1597d7283b039.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/37/b6d3705f6ca6e9ab62ad136bd1597d7283b039.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e2/9633088b13d7ac6be99a54dd465b24d1d40504.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e2/9633088b13d7ac6be99a54dd465b24d1d40504.debug @@ -14261,16 +14297,16 @@ chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/68/b0b44282fcdf93cf17e27e1509003371ff24fb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/68/b0b44282fcdf93cf17e27e1509003371ff24fb.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10 - objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10/6cddd9e9cdb4d363358651e4ea106e110582b0.debug - chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10/6cddd9e9cdb4d363358651e4ea106e110582b0.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10/6cddd9e9cdb4d363358651e4ea106e110582b0.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/17/2c3019e6455c6cd01ec4991e0db46aa07ad38c.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/17/2c3019e6455c6cd01ec4991e0db46aa07ad38c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/17/2c3019e6455c6cd01ec4991e0db46aa07ad38c.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-313-aarch64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10 + objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10/6cddd9e9cdb4d363358651e4ea106e110582b0.debug + chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10/6cddd9e9cdb4d363358651e4ea106e110582b0.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10/6cddd9e9cdb4d363358651e4ea106e110582b0.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligncore.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84/4d3183cae3926ea8bdfdf15de465a24ddcfeae.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84/4d3183cae3926ea8bdfdf15de465a24ddcfeae.debug @@ -14292,7 +14328,7 @@ rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/DEBIAN - dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/_bcif_helper.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/_bcif_helper.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligncore.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligncore.cpython-312-aarch64-linux-gnu.so + dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/_bcif_helper.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/_bcif_helper.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligncore.cpython-313-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligncore.cpython-312-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect @@ -14314,31 +14350,31 @@ cat debian/python3-biopython-sql.prerm.debhelper >> debian/python3-biopython-sql/DEBIAN/prerm chmod 0755 -- debian/python3-biopython-sql/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild - install -m0755 -d debian/python-biopython-doc/DEBIAN - echo misc:Depends= >> debian/python-biopython-doc.substvars - echo misc:Pre-Depends= >> debian/python-biopython-doc.substvars - dpkg-gencontrol -ppython-biopython-doc -ldebian/changelog -Tdebian/python-biopython-doc.substvars -cdebian/control -Pdebian/python-biopython-doc install -m0755 -d debian/python3-biopython-sql/DEBIAN echo misc:Depends= >> debian/python3-biopython-sql.substvars echo misc:Pre-Depends= >> debian/python3-biopython-sql.substvars dpkg-gencontrol -ppython3-biopython-sql -ldebian/changelog -Tdebian/python3-biopython-sql.substvars -cdebian/control -Pdebian/python3-biopython-sql + install -m0755 -d debian/python-biopython-doc/DEBIAN + echo misc:Depends= >> debian/python-biopython-doc.substvars + echo misc:Pre-Depends= >> debian/python-biopython-doc.substvars + dpkg-gencontrol -ppython-biopython-doc -ldebian/changelog -Tdebian/python-biopython-doc.substvars -cdebian/control -Pdebian/python-biopython-doc install -m0755 -d debian/python3-biopython/DEBIAN echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -cdebian/control -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=0721f21cdc8cdb95c70ed651a6757c88c5852775 076c1d8b2eb2a7a9abfee0f85e5b30ad87ab71a2 077ade2dd04611126cf1fa84604e695d7b9c6c4f 106cddd9e9cdb4d363358651e4ea106e110582b0 172c3019e6455c6cd01ec4991e0db46aa07ad38c 2ce99cc56f6a858d5d5839700e9bdb2be7b710bf 37b6d3705f6ca6e9ab62ad136bd1597d7283b039 40e166b12d24251b0602b604bbece6ff0cad18a8 412e7cd3e9319a3102cadd171d892dd62d7282c7 5cf0d842251360167512fa0a3d93e9ca2dc929e5 664bbb765dffba7b5756d6b7ea6e45221f3f3138 68b0b44282fcdf93cf17e27e1509003371ff24fb 844d3183cae3926ea8bdfdf15de465a24ddcfeae 968dbdd215b20a64f4d4814f7c30450470e97679 a02037bc6d10e9a2fed606cb4525f03fef579821 bf4b025abe2a4aae585df0d9a9e08343f6282efb bfa1e9cc16bdb64cb6a7e8662fcc2581505e494a c88c48f2f8726f27b0856fc7a7ffb1c66c202082 d11a49325a31fdffbba2a1bd18e220b07c6c4ae4 e29633088b13d7ac6be99a54dd465b24d1d40504 eda1f28b94f9d12e6ad409d1c228770008eb79c3 fd7645d2561e3785d4720fa3db9a62a16002b259" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control - dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -cdebian/control -Pdebian/python3-biopython dpkg-gencontrol: warning: Provides field of package python3-biopython-sql: substitution variable ${python3:Provides} used, but is not defined chmod 0644 -- debian/python3-biopython-sql/DEBIAN/control chmod 0644 -- debian/python-biopython-doc/DEBIAN/control + chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control + dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -cdebian/control -Pdebian/python3-biopython chmod 0644 -- debian/python3-biopython/DEBIAN/control dh_md5sums -O--buildsystem=pybuild + install -m0755 -d debian/python3-biopython/DEBIAN install -m0755 -d debian/python-biopython-doc/DEBIAN install -m0755 -d debian/python3-biopython-sql/DEBIAN - install -m0755 -d debian/python3-biopython/DEBIAN - cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biopython-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython-sql/DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums @@ -14348,11 +14384,11 @@ chmod 0644 -- debian/python-biopython-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biopython .. - dpkg-deb --root-owner-group --build debian/python3-biopython-sql .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biopython/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python-biopython-doc .. -dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.84+dfsg-4_arm64.deb'. + dpkg-deb --root-owner-group --build debian/python3-biopython-sql .. dpkg-deb: building package 'python3-biopython-dbgsym' in '../python3-biopython-dbgsym_1.84+dfsg-4_arm64.deb'. +dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.84+dfsg-4_arm64.deb'. dpkg-deb: building package 'python-biopython-doc' in '../python-biopython-doc_1.84+dfsg-4_all.deb'. dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.84+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biopython_1.84+dfsg-4_arm64.buildinfo @@ -14362,12 +14398,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3720380/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3720380/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1814912 and its subdirectories -I: Current time: Fri Jan 2 00:48:31 -12 2026 -I: pbuilder-time-stamp: 1767358111 +I: removing directory /srv/workspace/pbuilder/3720380 and its subdirectories +I: Current time: Sat Nov 30 20:50:37 +14 2024 +I: pbuilder-time-stamp: 1732949437