Diff of the two buildlogs: -- --- b1/build.log 2024-12-04 13:56:36.287964601 +0000 +++ b2/build.log 2024-12-04 13:57:55.064392062 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 4 01:55:12 -12 2024 -I: pbuilder-time-stamp: 1733320512 +I: Current time: Wed Jan 7 10:19:38 +14 2026 +I: pbuilder-time-stamp: 1767730778 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying no-incompatible-pointer-types.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3542511/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3630292/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 6 20:19 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3630292/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3630292/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='4f2de3e46a434138a29ef1aa47a62bd0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3542511' - PS1='# ' - PS2='> ' + INVOCATION_ID=2de446c44e1f4fad88f1c318062912d5 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3630292 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mgNpAYIv/pbuilderrc_NOLO --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mgNpAYIv/b1 --logfile b1/build.log nim-hts_0.3.25+ds-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mgNpAYIv/pbuilderrc_Wper --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mgNpAYIv/b2 --logfile b2/build.log nim-hts_0.3.25+ds-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3542511/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3630292/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -216,7 +248,7 @@ Get: 92 http://deb.debian.org/debian unstable/main arm64 nim arm64 1.6.14-3+b1 [4039 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 samtools arm64 1.20-3+b1 [629 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 tabix arm64 1.20+ds-2 [455 kB] -Fetched 42.9 MB in 0s (87.9 MB/s) +Fetched 42.9 MB in 0s (122 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20086 files and directories currently installed.) @@ -607,7 +639,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/nim-hts-0.3.25+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nim-hts_0.3.25+ds-2_source.changes +I: user script /srv/workspace/pbuilder/3630292/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3630292/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/nim-hts-0.3.25+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nim-hts_0.3.25+ds-2_source.changes dpkg-buildpackage: info: source package nim-hts dpkg-buildpackage: info: source version 0.3.25+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -760,13 +796,13 @@ CC: ../../../../usr/lib/nim/lib/pure/parseutils.nim CC: ../../../../usr/lib/nim/lib/pure/math.nim CC: ../../../../usr/lib/nim/lib/pure/algorithm.nim -CC: ../../../../usr/lib/nim/lib/pure/unicode.nim -CC: ../../../../usr/lib/nim/lib/pure/strutils.nim -CC: ../../../../usr/lib/nim/lib/pure/streams.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem@sio.nim.c: In function 'raiseEIO__systemZio_96': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem@sio.nim.c:425:1: warning: 'noreturn' function does return 425 | } | ^ +CC: ../../../../usr/lib/nim/lib/pure/unicode.nim +CC: ../../../../usr/lib/nim/lib/pure/strutils.nim +CC: ../../../../usr/lib/nim/lib/pure/streams.nim CC: ../../../../usr/lib/nim/lib/pure/times.nim CC: ../../../../usr/lib/nim/lib/pure/hashes.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sets.nim @@ -778,34 +814,13 @@ CC: ../src/hts/bam/flag.nim CC: flagtest.nim CC: ../src/hts/bam.nim -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3152': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4390:1: warning: 'noreturn' function does return - 4390 | } - | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c: In function 'testEnded__pureZunittest_469': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3072': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4475:1: warning: 'noreturn' function does return - 4475 | } - | ^ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_2934': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4682:1: warning: 'noreturn' function does return - 4682 | } - | ^ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3403': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4903:1: warning: 'noreturn' function does return - 4903 | } - | ^ -CC: cigartest.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:1065:66: warning: passing argument 2 of 'writeLine__pureZstreams_205' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1065 | writeLine__pureZstreams_205((*formatter).stream, TM__Um3CQPZ9bILAIolZOsxNIaw_29, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:278:123: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 278 | N_LIB_PRIVATE N_NIMCALL(void, writeLine__pureZstreams_205)(tyObject_StreamObj__GEE8eLXRbeO6QCtMQowoMg* s, NimStringDesc** args, NI argsLen_0); | ~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3426': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:6359:1: warning: 'noreturn' function does return - 6359 | } - | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:1228:58: warning: passing argument 2 of 'writeLine__pureZstreams_205' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1228 | writeLine__pureZstreams_205((*formatter).stream, TM__Um3CQPZ9bILAIolZOsxNIaw_39, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -819,29 +834,41 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:278:123: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 278 | N_LIB_PRIVATE N_NIMCALL(void, writeLine__pureZstreams_205)(tyObject_StreamObj__GEE8eLXRbeO6QCtMQowoMg* s, NimStringDesc** args, NI argsLen_0); | ~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3152': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4390:1: warning: 'noreturn' function does return + 4390 | } + | ^ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3072': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4475:1: warning: 'noreturn' function does return + 4475 | } + | ^ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_2934': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4682:1: warning: 'noreturn' function does return + 4682 | } + | ^ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3403': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4903:1: warning: 'noreturn' function does return + 4903 | } + | ^ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3426': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:6359:1: warning: 'noreturn' function does return + 6359 | } + | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3318': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:6809:1: warning: 'noreturn' function does return 6809 | } | ^ -CC: htstest.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3254': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:7844:1: warning: 'noreturn' function does return 7844 | } | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3193': +CC: cigartest.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:7874:1: warning: 'noreturn' function does return 7874 | } | ^ -CC: ../src/hts/vcf.nim -CC: ../src/hts/fai.nim -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c: In function 'atmhtstestdotnim_Init000': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:2294:104: warning: passing argument 2 of 'set_fields__OOZsrcZhtsZbam_1045' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] - 2294 | colonc1___htstest_215 = set_fields__OOZsrcZhtsZbam_1045(b__htstest_21, TM__jvcRnrtV7JVGTy2WY4Ac9bQ_61, 2); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +CC: htstest.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c: In function 'set_fields__OOZsrcZhtsZbam_1045': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:396:161: note: expected 'tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw *' {aka 'int *'} but argument is of type 'const tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw *' {aka 'const int *'} - 396 | N_LIB_PRIVATE N_NIMCALL(NI, set_fields__OOZsrcZhtsZbam_1045)(tyObject_BamcolonObjectType___10nvBEE8jyF9b8WnXewcLvg* b, tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw* fields, NI fieldsLen_0); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c:1613:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1613 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__fmsjfOMDZ7knDvhlaoEJsw_34, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -855,14 +882,24 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c:815:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 815 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c: In function 'destroy_vcf__OOZsrcZhtsZvcf_312': +CC: ../src/hts/vcf.nim +CC: ../src/hts/fai.nim +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c: In function 'atmhtstestdotnim_Init000': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:2294:104: warning: passing argument 2 of 'set_fields__OOZsrcZhtsZbam_1045' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] + 2294 | colonc1___htstest_215 = set_fields__OOZsrcZhtsZbam_1045(b__htstest_21, TM__jvcRnrtV7JVGTy2WY4Ac9bQ_61, 2); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:396:161: note: expected 'tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw *' {aka 'int *'} but argument is of type 'const tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw *' {aka 'const int *'} + 396 | N_LIB_PRIVATE N_NIMCALL(NI, set_fields__OOZsrcZhtsZbam_1045)(tyObject_BamcolonObjectType___10nvBEE8jyF9b8WnXewcLvg* b, tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw* fields, NI fieldsLen_0); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ CC: ../src/hts/bgzf.nim +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c: In function 'destroy_vcf__OOZsrcZhtsZvcf_312': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:926:71: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 926 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__YpitUkA2u56canbHw5ilBQ_8, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:842:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 842 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ +CC: ../src/hts/csi.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c: In function 'close__OOZsrcZhtsZvcf_786': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:1688:51: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1688 | T16_ = contains__stdZenumutils_44(TM__YpitUkA2u56canbHw5ilBQ_39, 2, (*v).fname); @@ -870,10 +907,8 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:1639:71: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 1639 | static N_INLINE(NIM_BOOL, contains__stdZenumutils_44)(NimStringDesc** a, NI aLen_0, NimStringDesc* item) { | ~~~~~~~~~~~~~~~~^ -CC: ../src/hts/csi.nim CC: ../src/hts/bgzf/bgzi.nim CC: ../src/hts/stats.nim -CC: ../src/hts.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c: In function 'new_csi__OOZsrcZhtsZcsi_87': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c:633:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 633 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__tWGoZmdVu2LPIrNJYnsx1g_7, 1); @@ -881,8 +916,8 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c:587:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 587 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ +CC: ../src/hts.nim CC: bgzftest.nim -CC: faitest.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c: In function 'close__OOZsrcZhtsZbgzfZbgzi_160': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c:659:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 659 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__qoWmRqjZwkhRpTDfcqFa9bQ_10, 1); @@ -896,22 +931,21 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c:611:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 611 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ +CC: faitest.nim CC: auxtest.nim CC: vcftest.nim CC: bamtest.nim CC: statstests.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c: In function 'write_interval__OOZsrcZhtsZbgzfZbgzi_131': -CC: vcfiso.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c:1693:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1693 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__9aWI9cEsc4bKIGHzHjCQ7r4w_127, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c:1558:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 1558 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ +CC: vcfiso.nim CC: ../src/hts/files.nim CC: test_files.nim -CC: all.nim -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c: In function 'write_linked_blocks__vcftest_4811': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c: In function 'atmvcfisodotnim_Init000': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:1935:99: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1935 | T57_ = contains__stdZenumutils_44(TM__sA80JslFRt9aI2gci0rbANg_22, 2, ((NimStringDesc*) &TM__sA80JslFRt9aI2gci0rbANg_25)); @@ -922,12 +956,6 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:2450:149: warning: passing argument 2 of 'nsuSplitCharSet' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 2450 | T210_ = nsuSplitCharSet(((NimStringDesc*) &TM__sA80JslFRt9aI2gci0rbANg_25), TM__sA80JslFRt9aI2gci0rbANg_59, ((NI) 1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6278:59: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] - 6278 | T14_ = contains__stdZenumutils_44(TM__9b1mIhyjPa0b9anS9ar5V6sPA_848, 2, ((NimStringDesc*) &TM__9b1mIhyjPa0b9anS9ar5V6sPA_850)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6174:71: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' - 6174 | static N_INLINE(NIM_BOOL, contains__stdZenumutils_44)(NimStringDesc** a, NI aLen_0, NimStringDesc* item) { - | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:504:135: note: expected 'NU8 *' {aka 'unsigned char *'} but argument is of type 'const NU8 *' {aka 'const unsigned char *'} 504 | N_LIB_PRIVATE N_NIMCALL(tySequence__sM4lkSb7zS6F7OVMvW9cffQ*, nsuSplitCharSet)(NimStringDesc* s, tySet_tyChar__nmiMWKVIe46vacnhAFrQvw seps, NI maxsplit); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -937,15 +965,23 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:1542:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 1542 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6637:112: warning: passing argument 2 of 'nsuSplitCharSet' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] - 6637 | T115_ = nsuSplitCharSet(((NimStringDesc*) &TM__9b1mIhyjPa0b9anS9ar5V6sPA_850), TM__9b1mIhyjPa0b9anS9ar5V6sPA_860, ((NI) 1)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:2623:119: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 2623 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__sA80JslFRt9aI2gci0rbANg_63, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:1542:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 1542 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c: In function 'write_linked_blocks__vcftest_4811': +CC: all.nim +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6278:59: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] + 6278 | T14_ = contains__stdZenumutils_44(TM__9b1mIhyjPa0b9anS9ar5V6sPA_848, 2, ((NimStringDesc*) &TM__9b1mIhyjPa0b9anS9ar5V6sPA_850)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6174:71: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' + 6174 | static N_INLINE(NIM_BOOL, contains__stdZenumutils_44)(NimStringDesc** a, NI aLen_0, NimStringDesc* item) { + | ~~~~~~~~~~~~~~~~^ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6637:112: warning: passing argument 2 of 'nsuSplitCharSet' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] + 6637 | T115_ = nsuSplitCharSet(((NimStringDesc*) &TM__9b1mIhyjPa0b9anS9ar5V6sPA_850), TM__9b1mIhyjPa0b9anS9ar5V6sPA_860, ((NI) 1)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:947:135: note: expected 'NU8 *' {aka 'unsigned char *'} but argument is of type 'const NU8 *' {aka 'const unsigned char *'} 947 | N_LIB_PRIVATE N_NIMCALL(tySequence__sM4lkSb7zS6F7OVMvW9cffQ*, nsuSplitCharSet)(NimStringDesc* s, tySet_tyChar__nmiMWKVIe46vacnhAFrQvw seps, NI maxsplit); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -988,7 +1024,7 @@ | ~~~~~~~~~~~~~~~~^ Hint: [Link] Hint: gc: refc; opt: none (DEBUG BUILD, `-d:release` generates faster code) -84669 lines; 8.421s; 145.355MiB peakmem; proj: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all.nim; out: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all [SuccessX] +84669 lines; 6.957s; 145.277MiB peakmem; proj: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all.nim; out: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all [SuccessX] tests/all [Suite] flag test-suite @@ -1062,7 +1098,7 @@ [OK] re-use same header issue 77 [Suite] speed tests -312078 in .. 8.568124399999999 seconds +312078 in .. 8.37573448 seconds [OK] standard format getter [Suite] vcf indexing suite @@ -1110,12 +1146,12 @@ install -p -m0644 debian/copyright debian/nim-hts-dev/usr/share/doc/nim-hts-dev/copyright install -p -m0644 debian/copyright debian/nim-hts-examples/usr/share/doc/nim-hts-examples/copyright dh_installchangelogs - install -m0755 -d debian/nim-hts-examples/usr/share/doc/nim-hts-examples - install -p -m0644 debian/.debhelper/generated/nim-hts-examples/dh_installchangelogs.dch.trimmed debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog.Debian - install -p -m0644 ./CHANGES.md debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog install -m0755 -d debian/nim-hts-dev/usr/share/doc/nim-hts-dev install -p -m0644 debian/.debhelper/generated/nim-hts-dev/dh_installchangelogs.dch.trimmed debian/nim-hts-dev/usr/share/doc/nim-hts-dev/changelog.Debian install -p -m0644 ./CHANGES.md debian/nim-hts-dev/usr/share/doc/nim-hts-dev/changelog + install -m0755 -d debian/nim-hts-examples/usr/share/doc/nim-hts-examples + install -p -m0644 debian/.debhelper/generated/nim-hts-examples/dh_installchangelogs.dch.trimmed debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog.Debian + install -p -m0644 ./CHANGES.md debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog dh_perl dh_link dh_strip_nondeterminism @@ -1123,16 +1159,16 @@ cd debian/nim-hts-examples cd debian/nim-hts-dev chmod a-x usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim - gzip -9nf usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim chmod a-x usr/share/doc/nim-hts-dev/changelog usr/share/doc/nim-hts-dev/changelog.Debian + gzip -9nf usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim gzip -9nf usr/share/doc/nim-hts-dev/changelog usr/share/doc/nim-hts-dev/changelog.Debian cd '/build/reproducible-path/nim-hts-0.3.25+ds' cd '/build/reproducible-path/nim-hts-0.3.25+ds' dh_fixperms - find debian/nim-hts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nim-hts-examples ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/nim-hts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/nim-hts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nim-hts-examples/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-examples/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/nim-hts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-examples/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nim-hts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nim-hts-examples -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 @@ -1154,16 +1190,16 @@ chmod 0644 -- debian/nim-hts-dev/DEBIAN/control dh_md5sums install -m0755 -d debian/nim-hts-dev/DEBIAN - cd debian/nim-hts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/nim-hts-examples/DEBIAN + cd debian/nim-hts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/nim-hts-examples >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/nim-hts-examples/DEBIAN/md5sums chmod 0644 -- debian/nim-hts-dev/DEBIAN/md5sums + chmod 0644 -- debian/nim-hts-examples/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/nim-hts-dev .. dpkg-deb --root-owner-group --build debian/nim-hts-examples .. -dpkg-deb: building package 'nim-hts-dev' in '../nim-hts-dev_0.3.25+ds-2_all.deb'. dpkg-deb: building package 'nim-hts-examples' in '../nim-hts-examples_0.3.25+ds-2_all.deb'. +dpkg-deb: building package 'nim-hts-dev' in '../nim-hts-dev_0.3.25+ds-2_all.deb'. dpkg-genbuildinfo --build=binary -O../nim-hts_0.3.25+ds-2_arm64.buildinfo dpkg-genchanges --build=binary -O../nim-hts_0.3.25+ds-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1171,12 +1207,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3630292/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3630292/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3542511 and its subdirectories -I: Current time: Wed Dec 4 01:56:35 -12 2024 -I: pbuilder-time-stamp: 1733320595 +I: removing directory /srv/workspace/pbuilder/3630292 and its subdirectories +I: Current time: Wed Jan 7 10:20:53 +14 2026 +I: pbuilder-time-stamp: 1767730853