Diff of the two buildlogs: -- --- b1/build.log 2024-12-02 00:25:15.927698282 +0000 +++ b2/build.log 2024-12-02 00:33:26.045694399 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Dec 1 12:15:33 -12 2024 -I: pbuilder-time-stamp: 1733098533 +I: Current time: Mon Dec 2 14:25:19 +14 2024 +I: pbuilder-time-stamp: 1733099119 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying pr1383.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1051505/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/781092/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 2 00:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/781092/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/781092/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='dfe6460c9c244796815c847c805d7910' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1051505' - PS1='# ' - PS2='> ' + INVOCATION_ID=14e4b6d17f8c47129703a50d1685f580 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=781092 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.I9XTmzDy/pbuilderrc_p99Q --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.I9XTmzDy/b1 --logfile b1/build.log nibabel_5.3.2-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.I9XTmzDy/pbuilderrc_NYx1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.I9XTmzDy/b2 --logfile b2/build.log nibabel_5.3.2-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1051505/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/781092/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -343,7 +375,7 @@ Get: 192 http://deb.debian.org/debian unstable/main arm64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 python3-pytest-httpserver all 1.1.0-1 [22.8 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 python3-texext all 0.6.7-5 [22.5 kB] -Fetched 116 MB in 1s (120 MB/s) +Fetched 116 MB in 0s (253 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) @@ -977,8 +1009,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Dec 2 00:16:34 UTC 2024. -Universal Time is now: Mon Dec 2 00:16:34 UTC 2024. +Local time is now: Mon Dec 2 00:25:49 UTC 2024. +Universal Time is now: Mon Dec 2 00:25:49 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1163,7 +1195,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/nibabel-5.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nibabel_5.3.2-2_source.changes +I: user script /srv/workspace/pbuilder/781092/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/781092/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/nibabel-5.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nibabel_5.3.2-2_source.changes dpkg-buildpackage: info: source package nibabel dpkg-buildpackage: info: source version 5.3.2-2 dpkg-buildpackage: info: source distribution unstable @@ -1180,8 +1216,8 @@ make[1]: Entering directory '/build/reproducible-path/nibabel-5.3.2' /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/nibabel-5.3.2' -/bin/sh: 1: python: not found -/bin/sh: 1: git: not found +/bin/sh: line 1: python: command not found +/bin/sh: line 1: git: command not found /usr/bin/make -C doc clean make[3]: Entering directory '/build/reproducible-path/nibabel-5.3.2/doc' rm -rf source/reference/*.rst @@ -1404,16 +1440,16 @@ Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv... loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv... -loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'numpy.org' ([Errno -3] Temporary failure in name resolution)")) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) +loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv... +loading intersphinx inventory 'matplotlib' from https://matplotlib.org/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) +intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.scipy.org' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.scipy.org' ([Errno -3] Temporary failure in name resolution)")) -loading intersphinx inventory 'matplotlib' from https://matplotlib.org/stable/objects.inv... +intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'numpy.org' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'matplotlib.org' ([Errno -3] Temporary failure in name resolution)")) +intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'matplotlib.org' ([Errno -3] Temporary failure in name resolution)")) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 127 source files that are out of date @@ -1809,10 +1845,10 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nibabel-5.3.2' PYBUILD_SYSTEM=custom \ -PYBUILD_TEST_ARGS="PATH={dir}/.pybuild/cpython3_{version}/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH={build_dir} LC_ALL=C.UTF-8 {interpreter} -m pytest --verbose" \ +PYBUILD_TEST_ARGS="PATH={dir}/.pybuild/cpython3_{version}/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH={build_dir} LC_ALL=C.UTF-8 {interpreter} -m pytest --verbose" \ dh_auto_test dh_auto_test: warning: warning: pybuild does not support building out of source tree. In source building enforced. -I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.3.2/.pybuild/cpython3_3.13/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH=/build/reproducible-path/nibabel-5.3.2/.pybuild/cpython3_3.13/build LC_ALL=C.UTF-8 python3.13 -m pytest --verbose +I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.3.2/.pybuild/cpython3_3.13/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH=/build/reproducible-path/nibabel-5.3.2/.pybuild/cpython3_3.13/build LC_ALL=C.UTF-8 python3.13 -m pytest --verbose ============================= test session starts ============================== platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache @@ -7583,9 +7619,9 @@ assert_array_equal(data_back, [np.array(np.nan).astype(np.int32), 99]) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 5451 passed, 101 skipped, 40 xfailed, 4 xpassed, 351 warnings in 155.01s (0:02:35) = += 5451 passed, 101 skipped, 40 xfailed, 4 xpassed, 351 warnings in 155.34s (0:02:35) = :0: ResourceWarning: unclosed file <_io.BufferedReader name='/build/reproducible-path/nibabel-5.3.2/nibabel/tests/data/tinypet.v'> -I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.3.2/.pybuild/cpython3_3.12/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH=/build/reproducible-path/nibabel-5.3.2/.pybuild/cpython3_3.12/build LC_ALL=C.UTF-8 python3.12 -m pytest --verbose +I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.3.2/.pybuild/cpython3_3.12/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH=/build/reproducible-path/nibabel-5.3.2/.pybuild/cpython3_3.12/build LC_ALL=C.UTF-8 python3.12 -m pytest --verbose ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache @@ -13347,8 +13383,12 @@ /build/reproducible-path/nibabel-5.3.2/nibabel/tests/test_scaling.py:132: RuntimeWarning: invalid value encountered in cast assert_array_equal(data_back, [np.array(np.nan).astype(np.int32), 99]) +nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters + /build/reproducible-path/nibabel-5.3.2/nibabel/volumeutils.py:1176: RuntimeWarning: overflow encountered in multiply + tst_trans = tst_trans * slope + -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 5451 passed, 101 skipped, 40 xfailed, 4 xpassed, 349 warnings in 155.22s (0:02:35) = += 5451 passed, 101 skipped, 40 xfailed, 4 xpassed, 350 warnings in 148.41s (0:02:28) = sys:1: ResourceWarning: unclosed file <_io.BufferedReader name='/build/reproducible-path/nibabel-5.3.2/nibabel/tests/data/tinypet.v'> make[1]: Leaving directory '/build/reproducible-path/nibabel-5.3.2' create-stamp debian/debhelper-build-stamp @@ -13410,8 +13450,8 @@ dh_gencontrol -O--buildsystem=pybuild -O--builddirectory=build dh_md5sums -O--buildsystem=pybuild -O--builddirectory=build dh_builddeb -O--buildsystem=pybuild -O--builddirectory=build -dpkg-deb: building package 'python-nibabel-doc' in '../python-nibabel-doc_5.3.2-2_all.deb'. dpkg-deb: building package 'python3-nibabel' in '../python3-nibabel_5.3.2-2_all.deb'. +dpkg-deb: building package 'python-nibabel-doc' in '../python-nibabel-doc_5.3.2-2_all.deb'. dpkg-genbuildinfo --build=binary -O../nibabel_5.3.2-2_arm64.buildinfo dpkg-genchanges --build=binary -O../nibabel_5.3.2-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -13420,12 +13460,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/781092/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/781092/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1051505 and its subdirectories -I: Current time: Sun Dec 1 12:25:14 -12 2024 -I: pbuilder-time-stamp: 1733099114 +I: removing directory /srv/workspace/pbuilder/781092 and its subdirectories +I: Current time: Mon Dec 2 14:33:24 +14 2024 +I: pbuilder-time-stamp: 1733099604