Diff of the two buildlogs: -- --- b1/build.log 2024-12-13 11:45:16.441047244 +0000 +++ b2/build.log 2024-12-13 11:45:54.719314800 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jan 15 06:07:44 -12 2026 -I: pbuilder-time-stamp: 1768500464 +I: Current time: Fri Jan 16 08:08:19 +14 2026 +I: pbuilder-time-stamp: 1768500499 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying clang.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2508971/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/372407/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 15 18:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/372407/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/372407/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='0bef31180f48496cbaf17aec48360ab5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2508971' - PS1='# ' - PS2='> ' + INVOCATION_ID=3663c6f412b446bbaa02a19bbe92d3ab + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=372407 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CibmoPpG/pbuilderrc_j5Vq --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CibmoPpG/b1 --logfile b1/build.log ncbi-seg_0.0.20000620-7.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CibmoPpG/pbuilderrc_EvWG --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CibmoPpG/b2 --logfile b2/build.log ncbi-seg_0.0.20000620-7.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2508971/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/372407/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -144,7 +176,7 @@ Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] -Fetched 19.4 MB in 0s (112 MB/s) +Fetched 19.4 MB in 0s (103 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20082 files and directories currently installed.) @@ -275,7 +307,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ncbi-seg-0.0.20000620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-seg_0.0.20000620-7_source.changes +I: user script /srv/workspace/pbuilder/372407/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/372407/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ncbi-seg-0.0.20000620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-seg_0.0.20000620-7_source.changes dpkg-buildpackage: info: source package ncbi-seg dpkg-buildpackage: info: source version 0.0.20000620-7 dpkg-buildpackage: info: source distribution unstable @@ -366,20 +402,6 @@ genwin.c:62:1: warning: return type defaults to 'int' [-Wimplicit-int] 62 | genwininit() | ^~~~~~~~~~ -genwin.c: In function 'opendbase': -genwin.c:93:8: warning: implicit declaration of function 'blastdb' [-Wimplicit-function-declaration] - 93 | if (blastdb(name)) - | ^~~~~~~ -genwin.c: At top level: -genwin.c:144:8: warning: return type defaults to 'int' [-Wimplicit-int] - 144 | extern closedbase(dbase) - | ^~~~~~~~~~ -genwin.c:185:8: warning: return type defaults to 'int' [-Wimplicit-int] - 185 | extern closeseq(seq) - | ^~~~~~~~ -genwin.c:319:8: warning: return type defaults to 'int' [-Wimplicit-int] - 319 | extern closewin(win) - | ^~~~~~~~ In file included from seg.c:10: genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] 146 | extern closedbase(); @@ -393,9 +415,6 @@ genwin.h:152:20: warning: type defaults to 'int' in declaration of 'closewin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ -genwin.c:336:8: warning: return type defaults to 'int' [-Wimplicit-int] - 336 | extern compon(win) - | ^~~~~~ genwin.h:154:8: warning: type defaults to 'int' in declaration of 'compon' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~~ @@ -417,6 +436,23 @@ genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ +genwin.c: In function 'opendbase': +genwin.c:93:8: warning: implicit declaration of function 'blastdb' [-Wimplicit-function-declaration] + 93 | if (blastdb(name)) + | ^~~~~~~ +genwin.c: At top level: +genwin.c:144:8: warning: return type defaults to 'int' [-Wimplicit-int] + 144 | extern closedbase(dbase) + | ^~~~~~~~~~ +genwin.c:185:8: warning: return type defaults to 'int' [-Wimplicit-int] + 185 | extern closeseq(seq) + | ^~~~~~~~ +genwin.c:319:8: warning: return type defaults to 'int' [-Wimplicit-int] + 319 | extern closewin(win) + | ^~~~~~~~ +genwin.c:336:8: warning: return type defaults to 'int' [-Wimplicit-int] + 336 | extern compon(win) + | ^~~~~~ genwin.c:364:8: warning: return type defaults to 'int' [-Wimplicit-int] 364 | extern stateon(win) | ^~~~~~~ @@ -622,8 +658,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'ncbi-seg' in '../ncbi-seg_0.0.20000620-7_arm64.deb'. dpkg-deb: building package 'ncbi-seg-dbgsym' in '../ncbi-seg-dbgsym_0.0.20000620-7_arm64.deb'. +dpkg-deb: building package 'ncbi-seg' in '../ncbi-seg_0.0.20000620-7_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ncbi-seg_0.0.20000620-7_arm64.buildinfo dpkg-genchanges --build=binary -O../ncbi-seg_0.0.20000620-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -631,12 +667,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/372407/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/372407/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2508971 and its subdirectories -I: Current time: Thu Jan 15 06:08:15 -12 2026 -I: pbuilder-time-stamp: 1768500495 +I: removing directory /srv/workspace/pbuilder/372407 and its subdirectories +I: Current time: Fri Jan 16 08:08:53 +14 2026 +I: pbuilder-time-stamp: 1768500533