Diff of the two buildlogs: -- --- b1/build.log 2024-10-26 08:39:40.342553601 +0000 +++ b2/build.log 2024-10-26 08:41:52.261851595 +0000 @@ -1,91 +1,8 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 25 20:38:52 -12 2024 -I: pbuilder-time-stamp: 1729931932 +I: Current time: Sat Nov 29 05:02:43 +14 2025 +I: pbuilder-time-stamp: 1764342163 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] -tar: ./build: time stamp 2025-11-27 02:06:38 is 34320464.812812943 s in the future -tar: ./dev/shm: time stamp 2025-11-28 01:29:55 is 34404661.812740623 s in the future -tar: ./dev/ptmx: time stamp 2025-11-27 02:06:22 is 34320448.812693303 s in the future -tar: ./dev/pts: time stamp 2025-11-27 02:06:22 is 34320448.812678783 s in the future -tar: ./dev/console: time stamp 2025-11-27 02:06:22 is 34320448.812668183 s in the future -tar: ./dev/tty: time stamp 2025-11-27 02:06:22 is 34320448.812655703 s in the future -tar: ./dev/urandom: time stamp 2025-11-27 02:06:22 is 34320448.812642823 s in the future -tar: ./dev/random: time stamp 2025-11-27 02:06:22 is 34320448.812630783 s in the future -tar: ./dev/full: time stamp 2025-11-27 02:06:22 is 34320448.812619063 s in the future -tar: ./dev/zero: time stamp 2025-11-27 02:06:22 is 34320448.812607303 s in the future -tar: ./dev/null: time stamp 2025-11-27 02:06:22 is 34320448.812595023 s in the future -tar: ./etc/resolv.conf: time stamp 2025-11-28 01:29:55 is 34404661.812561543 s in the future -tar: ./etc/mailname: time stamp 2025-11-28 01:29:55 is 34404661.812542903 s in the future -tar: ./etc/hostname: time stamp 2025-11-28 01:29:55 is 34404661.812531303 s in the future -tar: ./etc/hosts: time stamp 2025-11-28 01:29:55 is 34404661.812519263 s in the future -tar: ./etc/ld.so.cache: time stamp 2025-11-27 02:06:46 is 34320472.812477063 s in the future -tar: ./etc/group: time stamp 2025-11-27 02:06:43 is 34320469.812433463 s in the future -tar: ./etc/group-: time stamp 2025-11-27 02:06:22 is 34320448.812422183 s in the future -tar: ./etc/gshadow: time stamp 2025-11-27 02:06:43 is 34320469.812395383 s in the future -tar: ./etc/passwd: time stamp 2025-11-27 02:06:43 is 34320469.812377103 s in the future -tar: ./etc/passwd-: time stamp 2025-11-27 02:06:22 is 34320448.812366463 s in the future -tar: ./etc/shadow: time stamp 2025-11-27 02:06:43 is 34320469.812347543 s in the future -tar: ./etc/.pwd.lock: time stamp 2025-11-27 02:06:43 is 34320469.812332303 s in the future -tar: ./etc/selinux: time stamp 2025-11-27 02:06:43 is 34320469.812309343 s in the future -tar: ./etc/perl/Net: time stamp 2025-11-27 02:06:37 is 34320463.812257503 s in the future -tar: ./etc/perl: time stamp 2025-11-27 02:06:37 is 34320463.812248263 s in the future -tar: ./etc/kernel: time stamp 2025-11-27 02:06:30 is 34320456.812226543 s in the future -tar: ./etc/environment: time stamp 2025-11-27 02:06:29 is 34320455.812214343 s in the future -tar: ./etc/shells: time stamp 2025-11-27 02:06:28 is 34320454.811654303 s in the future -tar: ./etc/opt: time stamp 2025-11-27 02:06:22 is 34320448.811614623 s in the future -tar: ./etc/subgid: time stamp 2025-11-27 02:06:22 is 34320448.811569263 s in the future -tar: ./etc/subuid: time stamp 2025-11-27 02:06:22 is 34320448.811558223 s in the future -tar: ./etc/fstab: time stamp 2025-11-27 02:06:22 is 34320448.811547223 s in the future -tar: ./etc/terminfo: time stamp 2025-11-27 02:06:28 is 34320454.811528663 s in the future -tar: ./etc/pam.d/common-session-noninteractive: time stamp 2025-11-27 02:06:29 is 34320455.811456703 s in the future -tar: ./etc/pam.d/common-session: time stamp 2025-11-27 02:06:29 is 34320455.811442063 s in the future -tar: ./etc/pam.d/common-password: time stamp 2025-11-27 02:06:29 is 34320455.811430583 s in the future -tar: ./etc/pam.d/common-account: time stamp 2025-11-27 02:06:29 is 34320455.811416503 s in the future -tar: ./etc/pam.d/common-auth: time stamp 2025-11-27 02:06:29 is 34320455.811405263 s in the future -tar: ./etc/pam.d: time stamp 2025-11-27 02:06:43 is 34320469.811352623 s in the future -tar: ./etc/security/opasswd: time stamp 2025-11-27 02:06:29 is 34320455.811327943 s in the future -tar: ./etc/security: time stamp 2025-11-27 02:06:29 is 34320455.810702943 s in the future -tar: ./etc/ld.so.conf.d: time stamp 2025-11-27 02:06:46 is 34320472.810620023 s in the future -tar: ./etc/logrotate.d: time stamp 2025-11-27 02:06:46 is 34320472.810123143 s in the future -tar: ./etc/cron.daily: time stamp 2025-11-27 02:06:46 is 34320472.810065383 s in the future -tar: ./etc/apt/trusted.gpg.d/reproducible.asc: time stamp 2025-11-27 02:07:14 is 34320500.809628703 s in the future -tar: ./etc/apt/trusted.gpg.d: time stamp 2025-11-27 02:07:14 is 34320500.808461543 s in the future -tar: ./etc/apt/sources.list.d/reproducible.list: time stamp 2025-11-27 02:07:14 is 34320500.808411663 s in the future -tar: ./etc/apt/sources.list.d: time stamp 2025-11-27 02:07:14 is 34320500.808403743 s in the future -tar: ./etc/apt/preferences.d/reproducible: time stamp 2025-11-27 02:07:14 is 34320500.808382863 s in the future -tar: ./etc/apt/preferences.d: time stamp 2025-11-27 02:07:14 is 34320500.808376223 s in the future -tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2025-11-27 02:06:38 is 34320464.808337823 s in the future -tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2025-11-27 02:07:02 is 34320488.808306823 s in the future -tar: ./etc/apt/apt.conf.d: time stamp 2025-11-27 02:07:02 is 34320488.808300623 s in the future -tar: ./etc/apt/sources.list: time stamp 2025-11-27 02:07:02 is 34320488.808286703 s in the future -tar: ./etc/apt: time stamp 2025-11-27 02:07:02 is 34320488.808280103 s in the future -tar: ./etc/update-motd.d: time stamp 2025-11-27 02:06:28 is 34320454.808249303 s in the future -tar: ./etc/skel: time stamp 2025-11-27 02:06:28 is 34320454.808207503 s in the future -tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2025-11-27 02:07:02 is 34320488.808130183 s in the future -tar: ./etc/dpkg/dpkg.cfg.d: time stamp 2025-11-27 02:07:02 is 34320488.808123663 s in the future -tar: ./etc/dpkg/origins/default: time stamp 2025-11-27 02:06:22 is 34320448.808095823 s in the future -tar: ./etc/dpkg/origins: time stamp 2025-11-27 02:06:28 is 34320454.808078703 s in the future -tar: ./etc/dpkg: time stamp 2025-11-27 02:06:38 is 34320464.808069983 s in the future -tar: ./etc/default: time stamp 2025-11-27 02:06:43 is 34320469.808036143 s in the future -tar: ./media: time stamp 2025-11-27 02:06:22 is 34320448.807996143 s in the future -tar: ./mnt: time stamp 2025-11-27 02:06:22 is 34320448.807984103 s in the future -tar: ./opt: time stamp 2025-11-27 02:06:22 is 34320448.807972343 s in the future -tar: ./root: time stamp 2025-11-27 02:06:22 is 34320448.807932663 s in the future -tar: ./run/lock: time stamp 2025-11-27 02:06:22 is 34320448.807913183 s in the future -tar: ./srv: time stamp 2025-11-27 02:06:22 is 34320448.807890183 s in the future -tar: ./tmp: time stamp 2025-11-28 01:30:00 is 34404666.807869303 s in the future -tar: ./usr/local/man: time stamp 2025-11-27 02:06:22 is 34320448.807851783 s in the future -tar: ./usr/local/etc: time stamp 2025-11-27 02:06:22 is 34320448.807836743 s in the future -tar: ./usr/local/src: time stamp 2025-11-27 02:06:22 is 34320448.807824423 s in the future -tar: ./usr/local/sbin: time stamp 2025-11-27 02:06:22 is 34320448.807812383 s in the future -tar: ./usr/local/include: time stamp 2025-11-27 02:06:22 is 34320448.807799903 s in the future -tar: ./usr/local/libexec: time stamp 2025-11-27 02:06:22 is 34320448.807787703 s in the future -tar: ./usr/local/lib: time stamp 2025-11-27 02:06:22 is 34320448.807774983 s in the future -tar: ./usr/local/games: time stamp 2025-11-27 02:06:22 is 34320448.807763383 s in the future -tar: ./usr/local/bin: time stamp 2025-11-27 02:06:22 is 34320448.807751343 s in the future -tar: ./usr/local/share/man: time stamp 2025-11-27 02:06:22 is 34320448.807735023 s in the future -tar: ./usr/local/share: time stamp 2025-11-27 02:06:22 is 34320448.807726983 s in the future -tar: ./usr/local: time stamp 2025-11-27 02:06:22 is 34320448.807719103 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -115,52 +32,84 @@ dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2579174/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1221065/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 28 15:02 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1221065/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1221065/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='1a4b10565259425daa899bd20f18d9fc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2579174' - PS1='# ' - PS2='> ' + INVOCATION_ID=6a64fed4608f4c9f8e1e2fb82653e555 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1221065 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aurbYTDV/pbuilderrc_HOQN --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aurbYTDV/b1 --logfile b1/build.log libtfbs-perl_0.7.1+ds-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aurbYTDV/pbuilderrc_plbm --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aurbYTDV/b2 --logfile b2/build.log libtfbs-perl_0.7.1+ds-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2579174/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1221065/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -347,7 +296,7 @@ Get: 139 http://deb.debian.org/debian unstable/main arm64 libproj25 arm64 9.5.0-1 [1214 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 pdl arm64 1:2.093-1+b1 [3507 kB] -Fetched 54.8 MB in 0s (182 MB/s) +Fetched 54.8 MB in 1s (98.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20056 files and directories currently installed.) @@ -936,7 +885,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libtfbs-perl-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libtfbs-perl_0.7.1+ds-4_source.changes +I: user script /srv/workspace/pbuilder/1221065/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1221065/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libtfbs-perl-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libtfbs-perl_0.7.1+ds-4_source.changes dpkg-buildpackage: info: source package libtfbs-perl dpkg-buildpackage: info: source version 0.7.1+ds-4 dpkg-buildpackage: info: source distribution unstable @@ -978,58 +931,58 @@ make -j12 make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' -Skip blib/lib/TFBS/PatternGenI.pm (unchanged) -cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm -Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged) -cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm -cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm -Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged) +cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm +Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged) +Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged) +Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged) cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm -Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged) +cp TFBS/README.md blib/lib/TFBS/README.md +Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged) +cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm +Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged) +Skip blib/lib/TFBS/DB.pm (unchanged) +Skip blib/lib/TFBS/Site.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged) -Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged) -cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm +Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged) cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm Skip blib/lib/TFBS/SiteSet.pm (unchanged) -Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged) -cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm -Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged) -cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm -Skip blib/lib/TFBS/SitePairSet.pm (unchanged) +Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged) +Skip blib/lib/TFBS/PatternI.pm (unchanged) +cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm +Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged) +cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm +cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged) -cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm -Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged) -Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged) -Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged) -cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm -cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm -cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm -Skip blib/lib/TFBS/Site.pm (unchanged) Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged) -cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm -cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm -cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm +cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm +cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm +Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged) +cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm +cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm +cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm -cp TFBS/README.md blib/lib/TFBS/README.md -Skip blib/lib/TFBS/PatternI.pm (unchanged) -Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged) +cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm +Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged) -Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged) -cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm +Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged) +Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged) +Skip blib/lib/TFBS/SitePairSet.pm (unchanged) +cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm -cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm -Skip blib/lib/TFBS/DB.pm (unchanged) -Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged) +Skip blib/lib/TFBS/PatternGenI.pm (unchanged) +cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm +cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm +cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm Running Mkbootstrap for pwmsearch () "/usr/bin/perl" "/usr/share/perl/5.40.0/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.40/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc -Skip ../blib/lib/pwm_search.h (unchanged) Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged) cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c -Skip blib/lib/TFBS/_Iterator.pm (unchanged) -cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm -Skip blib/lib/TFBS/Word/Consensus.pm (unchanged) -Skip blib/lib/TFBS/Word.pm (unchanged) +Skip ../blib/lib/pwm_search.h (unchanged) cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm +Skip blib/lib/TFBS/Word.pm (unchanged) +Skip blib/lib/TFBS/Word/Consensus.pm (unchanged) +cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm +Skip blib/lib/TFBS/_Iterator.pm (unchanged) chmod 644 "pwmsearch.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 Please specify prototyping behavior for pwmsearch.xs (see perlxs manual) @@ -1073,7 +1026,7 @@ t/10_Tools_SetOperations.t .. ok Ext/t/pwmsearch.t ........... ok All tests successful. -Files=13, Tests=45, 3 wallclock secs ( 0.06 usr 0.02 sys + 2.13 cusr 0.48 csys = 2.69 CPU) +Files=13, Tests=45, 7 wallclock secs ( 0.06 usr 0.02 sys + 2.33 cusr 0.46 csys = 2.87 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' create-stamp debian/debhelper-build-stamp @@ -1092,12 +1045,12 @@ Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/pwm_searchPFF.c Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/pwm_search.h Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/TFFM.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/README.md -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SitePair.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/MatrixSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/MatrixSet.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SitePair.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/ConservationProfile.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/README.md Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Site.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Word.pm @@ -1107,12 +1060,12 @@ Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGenI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Run/ConservationProfileGenerator.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator/_MatrixSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator/_SiteSetIterator.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator/_MatrixSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Word/Consensus.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Tools/SetOperations.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/YMF.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/AnnSpec.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/YMF.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/SimplePFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/MEME.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Gibbs.pm @@ -1130,13 +1083,13 @@ Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/_Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/PWM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Ext/pwmsearch.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR5.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR6.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR4.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/FlatFileDir.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR6.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR5.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR7.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/FlatFileDir.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/TRANSFAC.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR4.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/LocalTRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR2.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm @@ -1212,8 +1165,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1+ds-4_arm64.deb'. dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1+ds-4_arm64.deb'. +dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1+ds-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libtfbs-perl_0.7.1+ds-4_arm64.buildinfo dpkg-genchanges --build=binary -O../libtfbs-perl_0.7.1+ds-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1221,12 +1174,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1221065/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1221065/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2579174 and its subdirectories -I: Current time: Fri Nov 28 03:02:39 -12 2025 -I: pbuilder-time-stamp: 1764342159 +I: removing directory /srv/workspace/pbuilder/1221065 and its subdirectories +I: Current time: Sat Nov 29 05:04:51 +14 2025 +I: pbuilder-time-stamp: 1764342291