Diff of the two buildlogs: -- --- b1/build.log 2025-01-10 06:26:45.991220872 +0000 +++ b2/build.log 2025-01-10 09:12:06.615744684 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Feb 11 23:31:57 -12 2026 -I: pbuilder-time-stamp: 1770895917 +I: Current time: Fri Feb 13 02:50:05 +14 2026 +I: pbuilder-time-stamp: 1770900605 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying doxygen_mathjax_path.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1241816/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3665376/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 12 12:50 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3665376/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3665376/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='619cd9161bbd4dd9b3dfa99cacb28acf' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1241816' - PS1='# ' - PS2='> ' + INVOCATION_ID=8a9e64c84f6d43a6a172b394985de753 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3665376 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BcgsFdIr/pbuilderrc_1ZfH --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BcgsFdIr/b1 --logfile b1/build.log libsbml_5.20.4+dfsg-0.1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BcgsFdIr/pbuilderrc_KIYU --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BcgsFdIr/b2 --logfile b2/build.log libsbml_5.20.4+dfsg-0.1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1241816/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/3665376/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -779,7 +811,7 @@ Get: 624 http://deb.debian.org/debian unstable/main arm64 r-base-dev all 4.4.2-1 [4516 B] Get: 625 http://deb.debian.org/debian unstable/main arm64 rdfind arm64 1.6.0-1+b2 [39.1 kB] Get: 626 http://deb.debian.org/debian unstable/main arm64 swig arm64 4.3.0-0.1 [1406 kB] -Fetched 426 MB in 2s (255 MB/s) +Fetched 426 MB in 2s (237 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19963 files and directories currently installed.) @@ -2810,8 +2842,8 @@ Setting up tzdata (2024b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Feb 12 11:33:08 UTC 2026. -Universal Time is now: Thu Feb 12 11:33:08 UTC 2026. +Local time is now: Thu Feb 12 12:51:15 UTC 2026. +Universal Time is now: Thu Feb 12 12:51:15 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... @@ -3534,7 +3566,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libsbml-5.20.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libsbml_5.20.4+dfsg-0.1_source.changes +I: user script /srv/workspace/pbuilder/3665376/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3665376/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libsbml-5.20.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libsbml_5.20.4+dfsg-0.1_source.changes dpkg-buildpackage: info: source package libsbml dpkg-buildpackage: info: source version 5.20.4+dfsg-0.1 dpkg-buildpackage: info: source distribution unstable @@ -3696,7 +3732,7 @@ To contact the developers directly, email libsbml-team@googlegroups.com - Configured on host 'codethink01-arm64' + Configured on host 'i-capture-the-hostname' host type = Linux host operating system = Linux 6.1.0-28-cloud-arm64 host CPU architecture = aarch64 @@ -3749,7 +3785,7 @@ -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- --- Configuring done (6.1s) +-- Configuring done (4.8s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: @@ -53401,92 +53437,7 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:903: warning: Found unknown command '@_treturn_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:905: warning: Found unknown command '@_tcopydetails_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:907: warning: Found unknown command '@_tmemberof_t' -LevelVersionConverter.cpp... -Generating docs for file SBMLLevelVersionConverter.h... -Generating docs for file SBMLLocalParameterConverter.cpp... -Generating docs for file SBMLLocalParameterConverter.h... -Generating docs for file SBMLRateOfConverter.cpp... -Generating docs for file SBMLRateOfConverter.h... -Generating docs for file SBMLRateRuleConverter.cpp... -Generating docs for file SBMLRateRuleConverter.h... -Generating docs for file SBMLReactionConverter.cpp... -Generating docs for file SBMLReactionConverter.h... -Generating docs for file SBMLRuleConverter.cpp... -Generating docs for file SBMLRuleConverter.h... -Generating docs for file SBMLStripPackageConverter.cpp... -Generating docs for file SBMLStripPackageConverter.h... -Generating docs for file SBMLUnitsConverter.cpp... -Generating docs for file SBMLUnitsConverter.h... -Generating docs for file Delay.cpp... -Generating docs for file Delay.h... -Generating docs for file Event.cpp... -Generating docs for file Event.h... -Generating docs for file EventAssignment.cpp... -Generating docs for file EventAssignment.h... -Generating docs for file ExpectedAttributes.cpp... -Generating docs for file ExpectedAttributes.h... -Generating docs for file ASTBasePlugin.cpp... -Generating docs for file ASTBasePlugin.h... -Generating docs for file ISBMLExtensionNamespaces.cpp... -Generating docs for file ISBMLExtensionNamespaces.h... -Generating docs for file SBaseExtensionPoint.cpp... -Generating docs for file SBaseExtensionPoint.h... -Generating docs for file SBasePlugin.cpp... -Generating docs for file SBasePlugin.h... -Generating docs for file SBasePluginCreator.h... -Generating docs for file SBasePluginCreatorBase.cpp... -Generating docs for file SBasePluginCreatorBase.h... -Generating docs for file SBMLDocumentPlugin.cpp... -Generating docs for file SBMLDocumentPlugin.h... -Generating docs for file SBMLDocumentPluginNotRequired.cpp... -Generating docs for file SBMLDocumentPluginNotRequired.h... -Generating docs for file SBMLExtension.cpp... -Generating docs for file SBMLExtension.h... -Generating docs for file SBMLExtensionException.cpp... -Generating docs for file SBMLExtensionException.h... -Generating docs for file SBMLExtensionNamespaces.cpp... -Generating docs for file SBMLExtensionNamespaces.h... -Generating docs for file SBMLExtensionRegister.h... -Generating docs for file SBMLExtensionRegistry.cpp... -Generating docs for file SBMLExtensionRegistry.h... -Generating docs for file FunctionDefinition.cpp... -Generating docs for file FunctionDefinition.h... -Generating docs for file InitialAssignment.cpp... -Generating docs for file InitialAssignment.h... -Generating docs for file KineticLaw.cpp... -Generating docs for file KineticLaw.h... -Generating docs for file ListOf.cpp... -Generating docs for file ListOf.h... -Generating docs for file LocalParameter.cpp... -Generating docs for file LocalParameter.h... -Generating docs for file ASTNode.cpp... -Generating docs for file ASTNode.h... -Generating docs for file ASTNodeType.h... -Generating docs for file DefinitionURLRegistry.cpp... -Generating docs for file DefinitionURLRegistry.h... -Generating docs for file FormulaFormatter.cpp... -Generating docs for file FormulaFormatter.h... -Generating docs for file FormulaParser.cpp... -Generating docs for file FormulaParser.h... -Generating docs for file FormulaTokenizer.cpp... -Generating docs for file FormulaTokenizer.h... -Generating docs for file L3FormulaFormatter.cpp... -Generating docs for file L3FormulaFormatter.h... -Generating docs for file L3Parser.cpp... -Generating docs for file L3Parser.h... -Generating docs for file L3ParserSettings.cpp... -Generating docs for file L3ParserSettings.h... -Generating docs for file MathML.cpp... -Generating docs for file MathML.h... -Generating docs for file Model.cpp... -Generating docs for file Model.h... -Generating docs for file ModifierSpeciesReference.cpp... -Generating docs for file ModifierSpeciesReference.h... -Generating docs for file CompExtensionTypes.h... -Generating docs for file CompExtension.cpp... -Generating docs for file CompExtension.h... -Generating docs for file CompModelPlugin.cpp... -Generat/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:978: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:978: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:981: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:983: warning: Found unknown command '@_tcopydetails_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:984: warning: Found unknown command '@_tli_t' @@ -53582,7 +53533,92 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:846: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:848: warning: Found unknown command '@_tcopydetails_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:850: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1035: warning: Found unknown command '@_tparam_t' +LevelVersionConverter.cpp... +Generating docs for file SBMLLevelVersionConverter.h... +Generating docs for file SBMLLocalParameterConverter.cpp... +Generating docs for file SBMLLocalParameterConverter.h... +Generating docs for file SBMLRateOfConverter.cpp... +Generating docs for file SBMLRateOfConverter.h... +Generating docs for file SBMLRateRuleConverter.cpp... +Generating docs for file SBMLRateRuleConverter.h... +Generating docs for file SBMLReactionConverter.cpp... +Generating docs for file SBMLReactionConverter.h... +Generating docs for file SBMLRuleConverter.cpp... +Generating docs for file SBMLRuleConverter.h... +Generating docs for file SBMLStripPackageConverter.cpp... +Generating docs for file SBMLStripPackageConverter.h... +Generating docs for file SBMLUnitsConverter.cpp... +Generating docs for file SBMLUnitsConverter.h... +Generating docs for file Delay.cpp... +Generating docs for file Delay.h... +Generating docs for file Event.cpp... +Generating docs for file Event.h... +Generating docs for file EventAssignment.cpp... +Generating docs for file EventAssignment.h... +Generating docs for file ExpectedAttributes.cpp... +Generating docs for file ExpectedAttributes.h... +Generating docs for file ASTBasePlugin.cpp... +Generating docs for file ASTBasePlugin.h... +Generating docs for file ISBMLExtensionNamespaces.cpp... +Generating docs for file ISBMLExtensionNamespaces.h... +Generating docs for file SBaseExtensionPoint.cpp... +Generating docs for file SBaseExtensionPoint.h... +Generating docs for file SBasePlugin.cpp... +Generating docs for file SBasePlugin.h... +Generating docs for file SBasePluginCreator.h... +Generating docs for file SBasePluginCreatorBase.cpp... +Generating docs for file SBasePluginCreatorBase.h... +Generating docs for file SBMLDocumentPlugin.cpp... +Generating docs for file SBMLDocumentPlugin.h... +Generating docs for file SBMLDocumentPluginNotRequired.cpp... +Generating docs for file SBMLDocumentPluginNotRequired.h... +Generating docs for file SBMLExtension.cpp... +Generating docs for file SBMLExtension.h... +Generating docs for file SBMLExtensionException.cpp... +Generating docs for file SBMLExtensionException.h... +Generating docs for file SBMLExtensionNamespaces.cpp... +Generating docs for file SBMLExtensionNamespaces.h... +Generating docs for file SBMLExtensionRegister.h... +Generating docs for file SBMLExtensionRegistry.cpp... +Generating docs for file SBMLExtensionRegistry.h... +Generating docs for file FunctionDefinition.cpp... +Generating docs for file FunctionDefinition.h... +Generating docs for file InitialAssignment.cpp... +Generating docs for file InitialAssignment.h... +Generating docs for file KineticLaw.cpp... +Generating docs for file KineticLaw.h... +Generating docs for file ListOf.cpp... +Generating docs for file ListOf.h... +Generating docs for file LocalParameter.cpp... +Generating docs for file LocalParameter.h... +Generating docs for file ASTNode.cpp... +Generating docs for file ASTNode.h... +Generating docs for file ASTNodeType.h... +Generating docs for file DefinitionURLRegistry.cpp... +Generating docs for file DefinitionURLRegistry.h... +Generating docs for file FormulaFormatter.cpp... +Generating docs for file FormulaFormatter.h... +Generating docs for file FormulaParser.cpp... +Generating docs for file FormulaParser.h... +Generating docs for file FormulaTokenizer.cpp... +Generating docs for file FormulaTokenizer.h... +Generating docs for file L3FormulaFormatter.cpp... +Generating docs for file L3FormulaFormatter.h... +Generating docs for file L3Parser.cpp... +Generating docs for file L3Parser.h... +Generating docs for file L3ParserSettings.cpp... +Generating docs for file L3ParserSettings.h... +Generating docs for file MathML.cpp... +Generating docs for file MathML.h... +Generating docs for file Model.cpp... +Generating docs for file Model.h... +Generating docs for file ModifierSpeciesReference.cpp... +Generating docs for file ModifierSpeciesReference.h... +Generating docs for file CompExtensionTypes.h... +Generating docs for file CompExtension.cpp... +Generating docs for file CompExtension.h... +Generating docs for file CompModelPlugin.cpp... +Generat/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1035: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1037: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1039: warning: Found unknown command '@_treturn_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1041: warning: Found unknown command '@_tcopydetails_t' @@ -58355,6 +58391,38 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1330: warning: Found unknown command '@_treturn_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1331: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1334: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1003: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:971: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:987: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:909: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:911: warning: Found unknown command '@_treturns_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:914: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:872: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:875: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:878: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:881: warning: Found unknown command '@_treturns_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:884: warning: Found unknown command '@_tcopydetails_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:886: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:897: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:899: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:925: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:927: warning: Found unknown command '@_treturn_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:929: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:940: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:942: warning: Found unknown command '@_treturn_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:944: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' ing docs for file CompModelPlugin.h... Generating docs for file CompSBasePlugin.cpp... Generating docs for file CompSBasePlugin.h... @@ -58442,39 +58510,7 @@ Generating docs for file GeneAssociation.h... Generating docs for file GeneProduct.cpp... Generating docs for file GeneProduct.h... -Generating docs for file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1003: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:971: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:987: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:909: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:911: warning: Found unknown command '@_treturns_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:914: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:872: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:875: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:878: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:881: warning: Found unknown command '@_treturns_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:884: warning: Found unknown command '@_tcopydetails_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:886: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:897: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:899: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:925: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:927: warning: Found unknown command '@_treturn_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:929: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:940: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:942: warning: Found unknown command '@_treturn_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:944: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1116: warning: Found unknown command '@_tparam_t' +Generating docs for file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1116: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1118: warning: Found unknown command '@_treturn_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1118: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1119: warning: Found unknown command '@_tc_t' @@ -62606,10 +62642,6 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1907: warning: Found unknown command '@_tp_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2396: warning: Found unknown command '@_treturn_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1789: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1778: warning: Found unknown command '@_tp_t' GeneProductAssociation.cpp... Generating docs for file GeneProductAssociation.h... Generating docs for file GeneProductRef.cpp... @@ -62693,7 +62725,11 @@ Generating docs for file GraphicalObject.cpp... Generating docs for file GraphicalObject.h... Generating docs for file Layout.cpp... -Generating/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t' +Generating/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1789: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1778: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2280: warning: Found unknown command '@_tp_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2205: warning: Found unknown command '@_tp_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2250: warning: Found unknown command '@_tp_t' @@ -67126,6 +67162,9 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:1099: warning: Found unknown command '@_tsbmlconstant_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:1101: warning: Found unknown command '@_tcopydetails_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:1103: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:53: warning: Found unknown command '@_tcopydetails_t' docs for file Layout.h... Generating docs for file LineSegment.cpp... Generating docs for file LineSegment.h... @@ -67205,10 +67244,7 @@ Generating docs for file MultiConsistencyValidator.cpp... Generating docs for file MultiConsistencyValidator.h... Generating docs for file MultiIdentifierConsistencyValidator.cpp... -Generating docs for file MultiIdentifierConsistencyValid/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:53: warning: Found unknown command '@_tcopydetails_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLErrorTable.h:44: warning: Found unknown command '@_tcond_t' +Generating docs for file MultiIdentifierConsistencyValid/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLErrorTable.h:44: warning: Found unknown command '@_tcond_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLErrorTable.h:44: warning: Found unknown command '@_tcond_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t' @@ -79067,17 +79103,6 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:197: warning: Found unknown command '@_treturn_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:198: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:198: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.cpp:1273: warning: Found unknown command '@_tendcond_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2302: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2302: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2320: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2320: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2340: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2340: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2358: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2358: warning: Found unknown command '@_tc_t' ile UnitDefinition.h... Generating docs for file UnitKind.c... Generating docs for file UnitKind.h... @@ -79161,7 +79186,18 @@ Generating docs for file LibXMLHandler.cpp... Generating docs for file LibXMLHandler.h... Generating docs for file LibXMLNamespaces.cpp... -Generating docs for file LibXMLNamespa/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:1871: warning: Found unknown command '@_tparam_t' +Generating docs for file LibXMLNamespa/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.cpp:1273: warning: Found unknown command '@_tendcond_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2302: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2302: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2320: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2320: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2340: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2340: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2358: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2358: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:1871: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:1872: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:1873: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:1875: warning: Found unknown command '@_tcopydetails_t' @@ -102186,92 +102222,7 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:903: warning: Found unknown command '@_treturn_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:905: warning: Found unknown command '@_tcopydetails_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:907: warning: Found unknown command '@_tmemberof_t' -LevelVersionConverter.cpp... -Generating docs for file SBMLLevelVersionConverter.h... -Generating docs for file SBMLLocalParameterConverter.cpp... -Generating docs for file SBMLLocalParameterConverter.h... -Generating docs for file SBMLRateOfConverter.cpp... -Generating docs for file SBMLRateOfConverter.h... -Generating docs for file SBMLRateRuleConverter.cpp... -Generating docs for file SBMLRateRuleConverter.h... -Generating docs for file SBMLReactionConverter.cpp... -Generating docs for file SBMLReactionConverter.h... -Generating docs for file SBMLRuleConverter.cpp... -Generating docs for file SBMLRuleConverter.h... -Generating docs for file SBMLStripPackageConverter.cpp... -Generating docs for file SBMLStripPackageConverter.h... -Generating docs for file SBMLUnitsConverter.cpp... -Generating docs for file SBMLUnitsConverter.h... -Generating docs for file Delay.cpp... -Generating docs for file Delay.h... -Generating docs for file Event.cpp... -Generating docs for file Event.h... -Generating docs for file EventAssignment.cpp... -Generating docs for file EventAssignment.h... -Generating docs for file ExpectedAttributes.cpp... -Generating docs for file ExpectedAttributes.h... -Generating docs for file ASTBasePlugin.cpp... -Generating docs for file ASTBasePlugin.h... -Generating docs for file ISBMLExtensionNamespaces.cpp... -Generating docs for file ISBMLExtensionNamespaces.h... -Generating docs for file SBaseExtensionPoint.cpp... -Generating docs for file SBaseExtensionPoint.h... -Generating docs for file SBasePlugin.cpp... -Generating docs for file SBasePlugin.h... -Generating docs for file SBasePluginCreator.h... -Generating docs for file SBasePluginCreatorBase.cpp... -Generating docs for file SBasePluginCreatorBase.h... -Generating docs for file SBMLDocumentPlugin.cpp... -Generating docs for file SBMLDocumentPlugin.h... -Generating docs for file SBMLDocumentPluginNotRequired.cpp... -Generating docs for file SBMLDocumentPluginNotRequired.h... -Generating docs for file SBMLExtension.cpp... -Generating docs for file SBMLExtension.h... -Generating docs for file SBMLExtensionException.cpp... -Generating docs for file SBMLExtensionException.h... -Generating docs for file SBMLExtensionNamespaces.cpp... -Generating docs for file SBMLExtensionNamespaces.h... -Generating docs for file SBMLExtensionRegister.h... -Generating docs for file SBMLExtensionRegistry.cpp... -Generating docs for file SBMLExtensionRegistry.h... -Generating docs for file FunctionDefinition.cpp... -Generating docs for file FunctionDefinition.h... -Generating docs for file InitialAssignment.cpp... -Generating docs for file InitialAssignment.h... -Generating docs for file KineticLaw.cpp... -Generating docs for file KineticLaw.h... -Generating docs for file ListOf.cpp... -Generating docs for file ListOf.h... -Generating docs for file LocalParameter.cpp... -Generating docs for file LocalParameter.h... -Generating docs for file ASTNode.cpp... -Generating docs for file ASTNode.h... -Generating docs for file ASTNodeType.h... -Generating docs for file DefinitionURLRegistry.cpp... -Generating docs for file DefinitionURLRegistry.h... -Generating docs for file FormulaFormatter.cpp... -Generating docs for file FormulaFormatter.h... -Generating docs for file FormulaParser.cpp... -Generating docs for file FormulaParser.h... -Generating docs for file FormulaTokenizer.cpp... -Generating docs for file FormulaTokenizer.h... -Generating docs for file L3FormulaFormatter.cpp... -Generating docs for file L3FormulaFormatter.h... -Generating docs for file L3Parser.cpp... -Generating docs for file L3Parser.h... -Generating docs for file L3ParserSettings.cpp... -Generating docs for file L3ParserSettings.h... -Generating docs for file MathML.cpp... -Generating docs for file MathML.h... -Generating docs for file Model.cpp... -Generating docs for file Model.h... -Generating docs for file ModifierSpeciesReference.cpp... -Generating docs for file ModifierSpeciesReference.h... -Generating docs for file CompExtensionTypes.h... -Generating docs for file CompExtension.cpp... -Generating docs for file CompExtension.h... -Generating docs for file CompModelPlugin.cpp... -Generat/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:978: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:978: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:981: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:983: warning: Found unknown command '@_tcopydetails_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:984: warning: Found unknown command '@_tli_t' @@ -102377,7 +102328,92 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:903: warning: Found unknown command '@_treturn_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:905: warning: Found unknown command '@_tcopydetails_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:907: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:646: warning: Found unknown command '@_tc_t' +LevelVersionConverter.cpp... +Generating docs for file SBMLLevelVersionConverter.h... +Generating docs for file SBMLLocalParameterConverter.cpp... +Generating docs for file SBMLLocalParameterConverter.h... +Generating docs for file SBMLRateOfConverter.cpp... +Generating docs for file SBMLRateOfConverter.h... +Generating docs for file SBMLRateRuleConverter.cpp... +Generating docs for file SBMLRateRuleConverter.h... +Generating docs for file SBMLReactionConverter.cpp... +Generating docs for file SBMLReactionConverter.h... +Generating docs for file SBMLRuleConverter.cpp... +Generating docs for file SBMLRuleConverter.h... +Generating docs for file SBMLStripPackageConverter.cpp... +Generating docs for file SBMLStripPackageConverter.h... +Generating docs for file SBMLUnitsConverter.cpp... +Generating docs for file SBMLUnitsConverter.h... +Generating docs for file Delay.cpp... +Generating docs for file Delay.h... +Generating docs for file Event.cpp... +Generating docs for file Event.h... +Generating docs for file EventAssignment.cpp... +Generating docs for file EventAssignment.h... +Generating docs for file ExpectedAttributes.cpp... +Generating docs for file ExpectedAttributes.h... +Generating docs for file ASTBasePlugin.cpp... +Generating docs for file ASTBasePlugin.h... +Generating docs for file ISBMLExtensionNamespaces.cpp... +Generating docs for file ISBMLExtensionNamespaces.h... +Generating docs for file SBaseExtensionPoint.cpp... +Generating docs for file SBaseExtensionPoint.h... +Generating docs for file SBasePlugin.cpp... +Generating docs for file SBasePlugin.h... +Generating docs for file SBasePluginCreator.h... +Generating docs for file SBasePluginCreatorBase.cpp... +Generating docs for file SBasePluginCreatorBase.h... +Generating docs for file SBMLDocumentPlugin.cpp... +Generating docs for file SBMLDocumentPlugin.h... +Generating docs for file SBMLDocumentPluginNotRequired.cpp... +Generating docs for file SBMLDocumentPluginNotRequired.h... +Generating docs for file SBMLExtension.cpp... +Generating docs for file SBMLExtension.h... +Generating docs for file SBMLExtensionException.cpp... +Generating docs for file SBMLExtensionException.h... +Generating docs for file SBMLExtensionNamespaces.cpp... +Generating docs for file SBMLExtensionNamespaces.h... +Generating docs for file SBMLExtensionRegister.h... +Generating docs for file SBMLExtensionRegistry.cpp... +Generating docs for file SBMLExtensionRegistry.h... +Generating docs for file FunctionDefinition.cpp... +Generating docs for file FunctionDefinition.h... +Generating docs for file InitialAssignment.cpp... +Generating docs for file InitialAssignment.h... +Generating docs for file KineticLaw.cpp... +Generating docs for file KineticLaw.h... +Generating docs for file ListOf.cpp... +Generating docs for file ListOf.h... +Generating docs for file LocalParameter.cpp... +Generating docs for file LocalParameter.h... +Generating docs for file ASTNode.cpp... +Generating docs for file ASTNode.h... +Generating docs for file ASTNodeType.h... +Generating docs for file DefinitionURLRegistry.cpp... +Generating docs for file DefinitionURLRegistry.h... +Generating docs for file FormulaFormatter.cpp... +Generating docs for file FormulaFormatter.h... +Generating docs for file FormulaParser.cpp... +Generating docs for file FormulaParser.h... +Generating docs for file FormulaTokenizer.cpp... +Generating docs for file FormulaTokenizer.h... +Generating docs for file L3FormulaFormatter.cpp... +Generating docs for file L3FormulaFormatter.h... +Generating docs for file L3Parser.cpp... +Generating docs for file L3Parser.h... +Generating docs for file L3ParserSettings.cpp... +Generating docs for file L3ParserSettings.h... +Generating docs for file MathML.cpp... +Generating docs for file MathML.h... +Generating docs for file Model.cpp... +Generating docs for file Model.h... +Generating docs for file ModifierSpeciesReference.cpp... +Generating docs for file ModifierSpeciesReference.h... +Generating docs for file CompExtensionTypes.h... +Generating docs for file CompExtension.cpp... +Generating docs for file CompExtension.h... +Generating docs for file CompModelPlugin.cpp... +Generat/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:646: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:556: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:559: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:561: warning: Found unknown command '@_tcopydetails_t' @@ -107140,6 +107176,36 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1330: warning: Found unknown command '@_treturn_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1331: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1334: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1003: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:971: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:987: warning: Found unknown command '@_tc_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:909: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:911: warning: Found unknown command '@_treturns_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:914: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:872: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:875: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:878: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:881: warning: Found unknown command '@_treturns_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:884: warning: Found unknown command '@_tcopydetails_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:886: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:897: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:899: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:925: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:927: warning: Found unknown command '@_treturn_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:929: warning: Found unknown command '@_tmemberof_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:940: warning: Found unknown command '@_tparam_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:942: warning: Found unknown command '@_treturn_t' +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:944: warning: Found unknown command '@_tmemberof_t' ing docs for file CompModelPlugin.h... Generating docs for file CompSBasePlugin.cpp... Generating docs for file CompSBasePlugin.h... @@ -107227,37 +107293,7 @@ Generating docs for file GeneAssociation.h... Generating docs for file GeneProduct.cpp... Generating docs for file GeneProduct.h... -Generating docs for file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1003: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:971: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:987: warning: Found unknown command '@_tc_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:909: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:911: warning: Found unknown command '@_treturns_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:914: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:872: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:875: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:878: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:881: warning: Found unknown command '@_treturns_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:884: warning: Found unknown command '@_tcopydetails_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:886: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:897: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:899: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:925: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:927: warning: Found unknown command '@_treturn_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:929: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:940: warning: Found unknown command '@_tparam_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:942: warning: Found unknown command '@_treturn_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:944: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' +Generating docs for file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1116: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1118: warning: Found unknown command '@_treturn_t' @@ -127008,7 +127044,98 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1872: warning: Found unknown command '@_tli_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1872: warning: Found unknown command '@_tsbmlconstant_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1874: warning: Found unknown command '@_tmemberof_t' -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2077: warning: Found unknown command '@_tc_t' +ator.h... +Generating docs for file MultiMathMLConsistencyValidator.cpp... +Generating docs for file MultiMathMLConsistencyValidator.h... +Generating docs for file MultiSBMLError.h... +Generating docs for file MultiSBMLErrorTable.h... +Generating docs for file MultiValidator.cpp... +Generating docs for file MultiValidator.h... +Generating docs for file QualExtensionTypes.h... +Generating docs for file qualfwd.h... +Generating docs for file QualExtension.cpp... +Generating docs for file QualExtension.h... +Generating docs for file QualModelPlugin.cpp... +Generating docs for file QualModelPlugin.h... +Generating docs for file QualSBMLDocumentPlugin.cpp... +Generating docs for file QualSBMLDocumentPlugin.h... +Generating docs for file DefaultTerm.cpp... +Generating docs for file DefaultTerm.h... +Generating docs for file FunctionTerm.cpp... +Generating docs for file FunctionTerm.h... +Generating docs for file Input.cpp... +Generating docs for file Input.h... +Generating docs for file Output.cpp... +Generating docs for file Output.h... +Generating docs for file QualitativeSpecies.cpp... +Generating docs for file QualitativeSpecies.h... +Generating docs for file Transition.cpp... +Generating docs for file Transition.h... +Generating docs for file QualConsistencyValidator.cpp... +Generating docs for file QualConsistencyValidator.h... +Generating docs for file QualIdentifierConsistencyValidator.cpp... +Generating docs for file QualIdentifierConsistencyValidator.h... +Generating docs for file QualMathConsistencyValidator.cpp... +Generating docs for file QualMathConsistencyValidator.h... +Generating docs for file QualSBMLError.h... +Generating docs for file QualSBMLErrorTable.h... +Generating docs for file QualValidator.cpp... +Generating docs for file QualValidator.h... +Generating docs for file Parameter.cpp... +Generating docs for file Parameter.h... +Generating docs for file Priority.cpp... +Generating docs for file Priority.h... +Generating docs for file RateRule.cpp... +Generating docs for file RateRule.h... +Generating docs for file Reaction.cpp... +Generating docs for file Reaction.h... +Generating docs for file Rule.cpp... +Generating docs for file Rule.h... +Generating docs for file SBase.cpp... +Generating docs for file SBase.h... +Generating docs for file SBMLConstructorException.cpp... +Generating docs for file SBMLConstructorException.h... +Generating docs for file SBMLConvert.cpp... +Generating docs for file SBMLDocument.cpp... +Generating docs for file SBMLDocument.h... +Generating docs for file SBMLError.cpp... +Generating docs for file SBMLError.h... +Generating docs for file SBMLErrorLog.cpp... +Generating docs for file SBMLErrorLog.h... +Generating docs for file SBMLErrorTable.h... +Generating docs for file SBMLNamespaces.cpp... +Generating docs for file SBMLNamespaces.h... +Generating docs for file SBMLReader.cpp... +Generating docs for file SBMLReader.h... +Generating docs for file SBMLTransforms.cpp... +Generating docs for file SBMLTransforms.h... +Generating docs for file SBMLTypeCodes.cpp... +Generating docs for file SBMLTypeCodes.h... +Generating docs for file SBMLTypes.h... +Generating docs for file SBMLVisitor.cpp... +Generating docs for file SBMLVisitor.h... +Generating docs for file SBMLWriter.cpp... +Generating docs for file SBMLWriter.h... +Generating docs for file SBO.cpp... +Generating docs for file SBO.h... +Generating docs for file SimpleSpeciesReference.cpp... +Generating docs for file SimpleSpeciesReference.h... +Generating docs for file Species.cpp... +Generating docs for file Species.h... +Generating docs for file SpeciesReference.cpp... +Generating docs for file SpeciesReference.h... +Generating docs for file SpeciesType.cpp... +Generating docs for file SpeciesType.h... +Generating docs for file StoichiometryMath.cpp... +Generating docs for file StoichiometryMath.h... +Generating docs for file SyntaxChecker.cpp... +Generating docs for file SyntaxChecker.h... +Generating docs for file Trigger.cpp... +Generating docs for file Trigger.h... +Generating docs for file Unit.cpp... +Generating docs for file Unit.h... +Generating docs for file UnitDefinition.cpp... +Generating docs for f/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2077: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2047: warning: Found unknown command '@_tc_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2032: warning: Found unknown command '@_tparam_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1546: warning: Found unknown command '@_tp_t' @@ -127327,98 +127454,7 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:105: warning: Unsupported xml/html tag <_tcode_t> found /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:105: warning: Unsupported xml/html tag found /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:105: warning: Found unknown command '@_tsbmlconstant_t' -ator.h... -Generating docs for file MultiMathMLConsistencyValidator.cpp... -Generating docs for file MultiMathMLConsistencyValidator.h... -Generating docs for file MultiSBMLError.h... -Generating docs for file MultiSBMLErrorTable.h... -Generating docs for file MultiValidator.cpp... -Generating docs for file MultiValidator.h... -Generating docs for file QualExtensionTypes.h... -Generating docs for file qualfwd.h... -Generating docs for file QualExtension.cpp... -Generating docs for file QualExtension.h... -Generating docs for file QualModelPlugin.cpp... -Generating docs for file QualModelPlugin.h... -Generating docs for file QualSBMLDocumentPlugin.cpp... -Generating docs for file QualSBMLDocumentPlugin.h... -Generating docs for file DefaultTerm.cpp... -Generating docs for file DefaultTerm.h... -Generating docs for file FunctionTerm.cpp... -Generating docs for file FunctionTerm.h... -Generating docs for file Input.cpp... -Generating docs for file Input.h... -Generating docs for file Output.cpp... -Generating docs for file Output.h... -Generating docs for file QualitativeSpecies.cpp... -Generating docs for file QualitativeSpecies.h... -Generating docs for file Transition.cpp... -Generating docs for file Transition.h... -Generating docs for file QualConsistencyValidator.cpp... -Generating docs for file QualConsistencyValidator.h... -Generating docs for file QualIdentifierConsistencyValidator.cpp... -Generating docs for file QualIdentifierConsistencyValidator.h... -Generating docs for file QualMathConsistencyValidator.cpp... -Generating docs for file QualMathConsistencyValidator.h... -Generating docs for file QualSBMLError.h... -Generating docs for file QualSBMLErrorTable.h... -Generating docs for file QualValidator.cpp... -Generating docs for file QualValidator.h... -Generating docs for file Parameter.cpp... -Generating docs for file Parameter.h... -Generating docs for file Priority.cpp... -Generating docs for file Priority.h... -Generating docs for file RateRule.cpp... -Generating docs for file RateRule.h... -Generating docs for file Reaction.cpp... -Generating docs for file Reaction.h... -Generating docs for file Rule.cpp... -Generating docs for file Rule.h... -Generating docs for file SBase.cpp... -Generating docs for file SBase.h... -Generating docs for file SBMLConstructorException.cpp... -Generating docs for file SBMLConstructorException.h... -Generating docs for file SBMLConvert.cpp... -Generating docs for file SBMLDocument.cpp... -Generating docs for file SBMLDocument.h... -Generating docs for file SBMLError.cpp... -Generating docs for file SBMLError.h... -Generating docs for file SBMLErrorLog.cpp... -Generating docs for file SBMLErrorLog.h... -Generating docs for file SBMLErrorTable.h... -Generating docs for file SBMLNamespaces.cpp... -Generating docs for file SBMLNamespaces.h... -Generating docs for file SBMLReader.cpp... -Generating docs for file SBMLReader.h... -Generating docs for file SBMLTransforms.cpp... -Generating docs for file SBMLTransforms.h... -Generating docs for file SBMLTypeCodes.cpp... -Generating docs for file SBMLTypeCodes.h... -Generating docs for file SBMLTypes.h... -Generating docs for file SBMLVisitor.cpp... -Generating docs for file SBMLVisitor.h... -Generating docs for file SBMLWriter.cpp... -Generating docs for file SBMLWriter.h... -Generating docs for file SBO.cpp... -Generating docs for file SBO.h... -Generating docs for file SimpleSpeciesReference.cpp... -Generating docs for file SimpleSpeciesReference.h... -Generating docs for file Species.cpp... -Generating docs for file Species.h... -Generating docs for file SpeciesReference.cpp... -Generating docs for file SpeciesReference.h... -Generating docs for file SpeciesType.cpp... -Generating docs for file SpeciesType.h... -Generating docs for file StoichiometryMath.cpp... -Generating docs for file StoichiometryMath.h... -Generating docs for file SyntaxChecker.cpp... -Generating docs for file SyntaxChecker.h... -Generating docs for file Trigger.cpp... -Generating docs for file Trigger.h... -Generating docs for file Unit.cpp... -Generating docs for file Unit.h... -Generating docs for file UnitDefinition.cpp... -Generating docs for f/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:106: warning: Unsupported xml/html tag <_tli_t> found +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:106: warning: Unsupported xml/html tag <_tli_t> found /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:106: warning: Found unknown command '@_tsbmlconstant_t' /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:106: warning: Unsupported xml/html tag <_tcode_t> found /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:106: warning: Unsupported xml/html tag found @@ -146878,6 +146914,7 @@ Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h... Pa/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.cpp:413: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp:969: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. +/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:126: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. rsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h... Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp... Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp... @@ -146912,8 +146949,7 @@ Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h... Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h... Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp... -Parsing file /build/reproducible-path/libsbml-5.20./build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:126: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. -/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:944: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. +Parsing file /build/reproducible-path/libsbml-5.20./build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:944: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1242: warning: the \endcond does not have a corresponding \cond in this file 4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp... Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h... @@ -154341,6 +154377,7 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:222: warning: included file callExternalValidator.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:225: warning: included file convertSBML.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:228: warning: included file createExampleSBML.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH -path/libsbml-5.20.4+dfsg/docs/src/libsbml-math.txt... Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-math.txt... Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-news.txt... @@ -154427,8 +154464,7 @@ Generating docs for example callExternalValidator.py... Generating docs for example convertSBML.py... Generating docs for example createExampleSBML.py... -Generating docs fo/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH +Generating docs fo/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH @@ -162199,6 +162235,15 @@ /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:330: warning: included file translateMath.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:333: warning: included file unsetAnnotation.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:336: warning: included file unsetNotes.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH l/packages/qual/validator/QualSBMLError.h... Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h... Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h... @@ -162293,16 +162338,7 @@ Generating docs for example translateMath.cpp... Generating docs for example unsetAnnotation.cpp... Generating docs for example unsetNotes.cpp... -Generating docs for example va/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:368: warning: included file groups_example1.cpp is not found. Check your EXAMPLE_PATH +Generating docs for example va/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:368: warning: included file groups_example1.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:372: warning: included file groups_example2.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:376: warning: included file SBMLHttpResolverExample.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:378: warning: included file promoteParameters.cpp is not found. Check your EXAMPLE_PATH @@ -177473,7 +177509,7 @@ 1: TestMultipleNamespaces 1: SBMLCompCheckConsistency 1: 100%: Checks: 14, Failures: 0, Errors: 0 - 1/65 Test #1: test_comp_extensions_run ...................... Passed 0.40 sec + 1/65 Test #1: test_comp_extensions_run ...................... Passed 2.62 sec test 2 Start 2: test_comp_sbase_run @@ -177494,7 +177530,7 @@ 2: comp_sBaseRef 2: comp_submodel 2: 100%: Checks: 105, Failures: 0, Errors: 0 - 2/65 Test #2: test_comp_sbase_run ........................... Passed 0.31 sec + 2/65 Test #2: test_comp_sbase_run ........................... Passed 1.35 sec test 3 Start 3: test_comp_util_run @@ -177512,7 +177548,7 @@ 3: SBMLCompFlatteningNewFlags 3: SBMLCompFlatteningConverterStripPackage 3: 100%: Checks: 365, Failures: 0, Errors: 0 - 3/65 Test #3: test_comp_util_run ............................ Passed 5.13 sec + 3/65 Test #3: test_comp_util_run ............................ Passed 8.26 sec test 4 Start 4: test_comp_validator_run @@ -177532,7 +177568,7 @@ 4: 100%: Checks: 14, Failures: 0 4: Testing Unit Consistency Constraints (10500 - 10599). 4: 100%: Checks: 22, Failures: 0 - 4/65 Test #4: test_comp_validator_run ....................... Passed 0.30 sec + 4/65 Test #4: test_comp_validator_run ....................... Passed 0.68 sec test 5 Start 5: test_sbml_package_fbc_run @@ -177546,7 +177582,7 @@ 5: ReadFbcExtension 5: FbcAssociation 5: 100%: Checks: 38, Failures: 0, Errors: 0 - 5/65 Test #5: test_sbml_package_fbc_run ..................... Passed 0.19 sec + 5/65 Test #5: test_sbml_package_fbc_run ..................... Passed 0.54 sec test 6 Start 6: test_fbc_validator_run @@ -177564,7 +177600,7 @@ 6: 100%: Checks: 248, Failures: 0 6: Testing Id Consistency Constraints (10300 - 10399). 6: 100%: Checks: 13, Failures: 0 - 6/65 Test #6: test_fbc_validator_run ........................ Passed 0.29 sec + 6/65 Test #6: test_fbc_validator_run ........................ Passed 0.67 sec test 7 Start 7: test_extension_package_groups_run @@ -177578,7 +177614,7 @@ 7: ReadGroupsExtension 7: GroupsModelPlugin 7: 100%: Checks: 25, Failures: 0, Errors: 0 - 7/65 Test #7: test_extension_package_groups_run ............. Passed 0.08 sec + 7/65 Test #7: test_extension_package_groups_run ............. Passed 0.40 sec test 8 Start 8: test_groups_validator_run @@ -177596,7 +177632,7 @@ 8: 100%: Checks: 95, Failures: 0 8: Testing Id Consistency Constraints (10300 - 10399). 8: 100%: Checks: 11, Failures: 0 - 8/65 Test #8: test_groups_validator_run ..................... Passed 0.06 sec + 8/65 Test #8: test_groups_validator_run ..................... Passed 0.14 sec test 9 Start 9: test_l3v2extendedmath_validator_run @@ -177614,7 +177650,7 @@ 9: 100%: Checks: 4, Failures: 0 9: Testing Unit Consistency Constraints (10500 - 10599). 9: 100%: Checks: 6, Failures: 0 - 9/65 Test #9: test_l3v2extendedmath_validator_run ........... Passed 0.02 sec + 9/65 Test #9: test_l3v2extendedmath_validator_run ........... Passed 0.04 sec test 10 Start 10: test_extension_package_l3v2extendedmath_run @@ -177628,7 +177664,7 @@ 10: ReadL3v2EMExtension 10: ReadWriteL3v2Infix 10: 100%: Checks: 18, Failures: 0, Errors: 0 -10/65 Test #10: test_extension_package_l3v2extendedmath_run ... Passed 0.06 sec +10/65 Test #10: test_extension_package_l3v2extendedmath_run ... Passed 0.20 sec test 11 Start 11: test_sbml_package_layout_run @@ -177657,7 +177693,7 @@ 11: SBMLHandler 11: LayoutWriting 11: 100%: Checks: 288, Failures: 0, Errors: 0 -11/65 Test #11: test_sbml_package_layout_run .................. Passed 0.87 sec +11/65 Test #11: test_sbml_package_layout_run .................. Passed 3.95 sec test 12 Start 12: test_layout_validator_run @@ -177675,7 +177711,7 @@ 12: 100%: Checks: 223, Failures: 0 12: Testing Id Consistency Constraints (10300 - 10399). 12: 100%: Checks: 18, Failures: 0 -12/65 Test #12: test_layout_validator_run ..................... Passed 0.32 sec +12/65 Test #12: test_layout_validator_run ..................... Passed 0.97 sec test 13 Start 13: test_extension_package_qual_run @@ -177689,7 +177725,7 @@ 13: ReadQualExtension 13: GetAllElements 13: 100%: Checks: 20, Failures: 0, Errors: 0 -13/65 Test #13: test_extension_package_qual_run ............... Passed 0.07 sec +13/65 Test #13: test_extension_package_qual_run ............... Passed 0.31 sec test 14 Start 14: test_sbml_package_qual_run @@ -177707,7 +177743,7 @@ 14: ListOfFunctionTerms 14: CopyAndClone 14: 100%: Checks: 73, Failures: 0, Errors: 0 -14/65 Test #14: test_sbml_package_qual_run .................... Passed 0.17 sec +14/65 Test #14: test_sbml_package_qual_run .................... Passed 0.60 sec test 15 Start 15: test_qual_validator_run @@ -177727,7 +177763,7 @@ 15: 100%: Checks: 4, Failures: 0 15: Testing Math Consistency Constraints (10200 - 10299). 15: 100%: Checks: 3, Failures: 0 -15/65 Test #15: test_qual_validator_run ....................... Passed 0.12 sec +15/65 Test #15: test_qual_validator_run ....................... Passed 0.10 sec test 16 Start 16: test_sbml_package_render_run @@ -177766,7 +177802,7 @@ 16: RenderReading 16: RenderWriting 16: 100%: Checks: 136, Failures: 0, Errors: 0 -16/65 Test #16: test_sbml_package_render_run .................. Passed 0.94 sec +16/65 Test #16: test_sbml_package_render_run .................. Passed 2.18 sec test 17 Start 17: test_render_validator_run @@ -177782,7 +177818,7 @@ 17: 17: Testing General XML Consistency Constraints (20000 - 29999). 17: 100%: Checks: 111, Failures: 0 -17/65 Test #17: test_render_validator_run ..................... Passed 0.11 sec +17/65 Test #17: test_render_validator_run ..................... Passed 0.14 sec test 18 Start 18: test_sbml_annotation_run @@ -177809,7 +177845,7 @@ 18: RDFAnnotationV4 18: UnusualRDFAnnotation 18: 100%: Checks: 193, Failures: 0, Errors: 0 -18/65 Test #18: test_sbml_annotation_run ...................... Passed 0.81 sec +18/65 Test #18: test_sbml_annotation_run ...................... Passed 2.69 sec test 19 Start 19: test_sbml_conversion_run @@ -177831,7 +177867,7 @@ 19: RateOfConverter 19: SBMLRateRuleConverter 19: 100%: Checks: 188, Failures: 0, Errors: 0 -19/65 Test #19: test_sbml_conversion_run ...................... Passed 1.19 sec +19/65 Test #19: test_sbml_conversion_run ...................... Passed 3.44 sec test 20 Start 20: test_sbml_extension_run @@ -177850,7 +177886,7 @@ 20: SBMLExtensionRegistry 20: TestUnknownPackages 20: 100%: Checks: 30, Failures: 0, Errors: 0 -20/65 Test #20: test_sbml_extension_run ....................... Passed 0.09 sec +20/65 Test #20: test_sbml_extension_run ....................... Passed 0.51 sec test 21 Start 21: test_sbml_math_run @@ -177878,7 +177914,7 @@ 21: TestInferRnFunctions 21: TestDerivFunctions 21: 100%: Checks: 739, Failures: 0, Errors: 0 -21/65 Test #21: test_sbml_math_run ............................ Passed 1.76 sec +21/65 Test #21: test_sbml_math_run ............................ Passed 10.13 sec test 22 Start 22: test_sbml_sbml_run @@ -177994,7 +178030,7 @@ 22: SBaseIdName 22: Generic Attribute Functions 22: 100%: Checks: 1746, Failures: 0, Errors: 0 -22/65 Test #22: test_sbml_sbml_run ............................ Passed 5.13 sec +22/65 Test #22: test_sbml_sbml_run ............................ Passed 23.57 sec test 23 Start 23: test_sbml_units_run @@ -178015,7 +178051,7 @@ 23: UnitFormulaFormatter3 23: DerivedUnitDefinitionUndefined 23: 100%: Checks: 178, Failures: 0, Errors: 0 -23/65 Test #23: test_sbml_units_run ........................... Passed 1.29 sec +23/65 Test #23: test_sbml_units_run ........................... Passed 3.02 sec test 24 Start 24: test_sbml_util_run @@ -178028,7 +178064,7 @@ 24: Stack 24: StringBuffer 24: 100%: Checks: 57, Failures: 0, Errors: 0 -24/65 Test #24: test_sbml_util_run ............................ Passed 0.07 sec +24/65 Test #24: test_sbml_util_run ............................ Passed 0.78 sec test 25 Start 25: test_sbml_validator_run @@ -178105,7 +178141,7 @@ 25: 100%: Checks: 30, Failures: 0 25: Testing Modeling Practice Constraints (80000 - 89999). 25: 100%: Checks: 56, Failures: 0 -25/65 Test #25: test_sbml_validator_run ....................... Passed 2.22 sec +25/65 Test #25: test_sbml_validator_run ....................... Passed 8.36 sec test 26 Start 26: test_sbml_xml_run @@ -178127,11 +178163,11 @@ 26: XMLErrorLog 26: XMLInputStream 26: XMLOutputStream -26: +26: 26: XMLAttributesC 26: XMLExceptions 26: 100%: Checks: 131, Failures: 0, Errors: 0 -26/65 Test #26: test_sbml_xml_run ............................. Passed 0.28 sec +26/65 Test #26: test_sbml_xml_run ............................. Passed 1.86 sec test 27 Start 27: test_java_binding @@ -178140,8 +178176,8 @@ 27: Environment variables: 27: LD_LIBRARY_PATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/java: 27: Test timeout computed to be: 3000 -27: ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... -27/65 Test #27: test_java_binding ............................. Passed 0.60 sec +27: ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... +27/65 Test #27: test_java_binding ............................. Passed 2.32 sec test 28 Start 28: test_java_printversion @@ -178149,7 +178185,7 @@ 28: Working Directory: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/java 28: Test timeout computed to be: 3000 28: . -28/65 Test #28: test_java_printversion ........................ Passed 0.19 sec +28/65 Test #28: test_java_printversion ........................ Passed 0.51 sec test 29 Start 29: test_perl_binding @@ -178200,9 +178236,9 @@ 29: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/perl/t/07__TestModelHistory.t .......... ok 29: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/perl/t/07__TestRDFAnnotation2.t ........ ok 29: All tests successful. -29: Files=41, Tests=3364, 7 wallclock secs ( 0.33 usr 0.12 sys + 6.08 cusr 0.81 csys = 7.34 CPU) +29: Files=41, Tests=3364, 11 wallclock secs ( 0.19 usr 0.06 sys + 4.21 cusr 0.83 csys = 5.29 CPU) 29: Result: PASS -29/65 Test #29: test_perl_binding ............................. Passed 7.15 sec +29/65 Test #29: test_perl_binding ............................. Passed 11.07 sec test 30 Start 30: test_python_binding @@ -178215,13 +178251,13 @@ 30: re_libxml = re.compile('^ USE_LIBXML \s* = \s* 1', re.X) 30: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/python/test/sbml/TestReadSBML.py:51: SyntaxWarning: invalid escape sequence '\s' 30: re_xerces = re.compile('^ USE_XERCES \s* = \s* 1', re.X) -30: ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... +30: ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 30: ................................................................................................................................................................................................................................................................................................................................................................................................................ 30: ---------------------------------------------------------------------- -30: Ran 1819 tests in 0.303s +30: Ran 1819 tests in 0.288s 30: 30: OK -30/65 Test #30: test_python_binding ........................... Passed 1.15 sec +30/65 Test #30: test_python_binding ........................... Passed 2.47 sec test 31 Start 31: test_python_printversion @@ -178230,7 +178266,7 @@ 31: Environment variables: 31: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 31: Test timeout computed to be: 3000 -31/65 Test #31: test_python_printversion ...................... Passed 0.19 sec +31/65 Test #31: test_python_printversion ...................... Passed 0.36 sec test 32 Start 32: test_python_addCVTerms @@ -178239,7 +178275,7 @@ 32: Environment variables: 32: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 32: Test timeout computed to be: 3000 -32/65 Test #32: test_python_addCVTerms ........................ Passed 0.19 sec +32/65 Test #32: test_python_addCVTerms ........................ Passed 0.34 sec test 33 Start 33: test_python_addingEvidenceCodes_1 @@ -178248,7 +178284,7 @@ 33: Environment variables: 33: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 33: Test timeout computed to be: 3000 -33/65 Test #33: test_python_addingEvidenceCodes_1 ............. Passed 0.20 sec +33/65 Test #33: test_python_addingEvidenceCodes_1 ............. Passed 0.30 sec test 34 Start 34: test_python_addingEvidenceCodes_2 @@ -178257,7 +178293,7 @@ 34: Environment variables: 34: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 34: Test timeout computed to be: 3000 -34/65 Test #34: test_python_addingEvidenceCodes_2 ............. Passed 0.19 sec +34/65 Test #34: test_python_addingEvidenceCodes_2 ............. Passed 0.16 sec test 35 Start 35: test_python_addModelHistory @@ -178270,7 +178306,7 @@ 35: Set created date: succeeded 35: Set modified date: succeeded 35: Set model history: unknown -35/65 Test #35: test_python_addModelHistory ................... Passed 0.20 sec +35/65 Test #35: test_python_addModelHistory ................... Passed 0.36 sec test 36 Start 36: test_python_append_to_note @@ -178287,7 +178323,7 @@ 36: Body after change: 36: 36:

Some notes

a new note -36/65 Test #36: test_python_append_to_note .................... Passed 0.21 sec +36/65 Test #36: test_python_append_to_note .................... Passed 0.20 sec test 37 Start 37: test_python_appendAnnotation @@ -178296,7 +178332,7 @@ 37: Environment variables: 37: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 37: Test timeout computed to be: 3000 -37/65 Test #37: test_python_appendAnnotation .................. Passed 0.20 sec +37/65 Test #37: test_python_appendAnnotation .................. Passed 0.15 sec test 38 Start 38: test_python_convertSBML @@ -178309,7 +178345,7 @@ 38: 38: Conversion completed. 38: -38/65 Test #38: test_python_convertSBML ....................... Passed 0.21 sec +38/65 Test #38: test_python_convertSBML ....................... Passed 0.17 sec test 39 Start 39: test_python_createExampleSBML @@ -178327,7 +178363,7 @@ 39: Notice: encountered 1 validation warning in model 'functionExample'. 39: 39: Wrote file 'functiondef.xml' -39/65 Test #39: test_python_createExampleSBML ................. Passed 0.18 sec +39/65 Test #39: test_python_createExampleSBML ................. Passed 0.37 sec test 40 Start 40: test_python_createSimpleModel @@ -178379,7 +178415,7 @@ 40: 40: 40: -40/65 Test #40: test_python_createSimpleModel ................. Passed 0.20 sec +40/65 Test #40: test_python_createSimpleModel ................. Passed 0.35 sec test 41 Start 41: test_python_echoSBML @@ -178389,7 +178425,7 @@ 41: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 41: Test timeout computed to be: 3000 41: [OK] Echoed /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml -41/65 Test #41: test_python_echoSBML .......................... Passed 0.20 sec +41/65 Test #41: test_python_echoSBML .......................... Passed 0.35 sec test 42 Start 42: test_python_evaluateCustomMath @@ -178399,7 +178435,7 @@ 42: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 42: Test timeout computed to be: 3000 42: 2*3+4 = 10.0 -42/65 Test #42: test_python_evaluateCustomMath ................ Passed 0.20 sec +42/65 Test #42: test_python_evaluateCustomMath ................ Passed 0.36 sec test 43 Start 43: test_python_getAllElementsWithNotes @@ -178410,11 +178446,11 @@ 43: Test timeout computed to be: 3000 43: 43: filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml -43: read time (ms): 0.941650390625 +43: read time (ms): 5.109619140625 43: searching ......: -43: search time (ms): 0.146240234375 +43: search time (ms): 0.15576171875 43: elements with notes: 0 -43/65 Test #43: test_python_getAllElementsWithNotes ........... Passed 0.20 sec +43/65 Test #43: test_python_getAllElementsWithNotes ........... Passed 0.37 sec test 44 Start 44: test_python_inlineInitialAssignments @@ -178423,7 +178459,7 @@ 44: Environment variables: 44: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 44: Test timeout computed to be: 3000 -44/65 Test #44: test_python_inlineInitialAssignments .......... Passed 0.20 sec +44/65 Test #44: test_python_inlineInitialAssignments .......... Passed 0.17 sec test 45 Start 45: test_python_printAnnotation @@ -178450,7 +178486,7 @@ 46: 46: 46: -46/65 Test #46: test_python_printMath ......................... Passed 0.20 sec +46/65 Test #46: test_python_printMath ......................... Passed 0.24 sec test 47 Start 47: test_python_printRegisteredPackages @@ -178470,7 +178506,7 @@ 47: qual 47: 47: -47/65 Test #47: test_python_printRegisteredPackages ........... Passed 0.20 sec +47/65 Test #47: test_python_printRegisteredPackages ........... Passed 0.38 sec test 48 Start 48: test_python_printSBML @@ -178496,7 +178532,7 @@ 48: events: 0 48: 48: -48/65 Test #48: test_python_printSBML ......................... Passed 0.20 sec +48/65 Test #48: test_python_printSBML ......................... Passed 0.39 sec test 49 Start 49: test_python_printsupported @@ -178517,7 +178553,7 @@ 49: SBML Level: 3 Version: 1 49: SBML Level: 3 Version: 2 49: -49/65 Test #49: test_python_printsupported .................... Passed 0.20 sec +49/65 Test #49: test_python_printsupported .................... Passed 0.28 sec test 50 Start 50: test_python_printUnits @@ -178537,7 +178573,7 @@ 50: Reaction 1: 50: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0) 50: undeclared units: no -50/65 Test #50: test_python_printUnits ........................ Passed 0.20 sec +50/65 Test #50: test_python_printUnits ........................ Passed 0.15 sec test 51 Start 51: test_python_promoteParameters @@ -178547,7 +178583,7 @@ 51: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 51: Test timeout computed to be: 3000 51: [OK] wrote promoteParameters.out.xml -51/65 Test #51: test_python_promoteParameters ................. Passed 0.15 sec +51/65 Test #51: test_python_promoteParameters ................. Passed 0.17 sec test 52 Start 52: test_python_readSBML @@ -178559,10 +178595,10 @@ 52: 52: filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml 52: file size: 3930 -52: read time (ms): 1.119852066040039 +52: read time (ms): 1.0733604431152344 52: validation error(s): 0 52: -52/65 Test #52: test_python_readSBML .......................... Passed 0.19 sec +52/65 Test #52: test_python_readSBML .......................... Passed 0.26 sec test 53 Start 53: test_python_replaceOneFD @@ -178571,7 +178607,7 @@ 53: Environment variables: 53: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 53: Test timeout computed to be: 3000 -53/65 Test #53: test_python_replaceOneFD ...................... Passed 0.19 sec +53/65 Test #53: test_python_replaceOneFD ...................... Passed 0.35 sec test 54 Start 54: test_python_setIdFromNames @@ -178582,11 +178618,11 @@ 54: Test timeout computed to be: 3000 54: 54: filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml -54: read time (ms): 0.9677734375 +54: read time (ms): 0.89892578125 54: rename time (ms): 0.09375 -54: write time (ms): 0.306396484375 +54: write time (ms): 0.291259765625 54: -54/65 Test #54: test_python_setIdFromNames .................... Passed 0.20 sec +54/65 Test #54: test_python_setIdFromNames .................... Passed 0.19 sec test 55 Start 55: test_python_setNamesFromIds @@ -178597,11 +178633,11 @@ 55: Test timeout computed to be: 3000 55: 55: filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml -55: read time (ms): 0.94189453125 -55: rename time (ms): 0.22705078125 -55: write time (ms): 0.302734375 +55: read time (ms): 0.885986328125 +55: rename time (ms): 0.203857421875 +55: write time (ms): 0.318115234375 55: -55/65 Test #55: test_python_setNamesFromIds ................... Passed 0.15 sec +55/65 Test #55: test_python_setNamesFromIds ................... Passed 0.18 sec test 56 Start 56: test_python_unsetAnnotation @@ -178610,7 +178646,7 @@ 56: Environment variables: 56: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 56: Test timeout computed to be: 3000 -56/65 Test #56: test_python_unsetAnnotation ................... Passed 0.20 sec +56/65 Test #56: test_python_unsetAnnotation ................... Passed 0.18 sec test 57 Start 57: test_python_unsetNotes @@ -178619,7 +178655,7 @@ 57: Environment variables: 57: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 57: Test timeout computed to be: 3000 -57/65 Test #57: test_python_unsetNotes ........................ Passed 0.20 sec +57/65 Test #57: test_python_unsetNotes ........................ Passed 0.16 sec test 58 Start 58: test_python_validateSBML @@ -178631,15 +178667,15 @@ 58: --------------------------------------------------------------------------- 58: filename : /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml 58: file size (byte) : 3930 -58: read time (ms) : 1.023293 -58: c-check time (ms) : 1.921177 +58: read time (ms) : 0.979424 +58: c-check time (ms) : 1.779795 58: validation error(s) : 0 58: (consistency error(s)): 0 58: validation warning(s) : 0 58: (consistency warning(s)): 0 58: --------------------------------------------------------------------------- 58: Validated 1 files, 1 valid files, 0 invalid files -58/65 Test #58: test_python_validateSBML ...................... Passed 0.20 sec +58/65 Test #58: test_python_validateSBML ...................... Passed 0.15 sec test 59 Start 59: test_python_stringInput @@ -178652,7 +178688,7 @@ 59: 59: 59: -59/65 Test #59: test_python_stringInput ....................... Passed 0.19 sec +59/65 Test #59: test_python_stringInput ....................... Passed 0.16 sec test 60 Start 60: test_python_stripPackage @@ -178671,7 +178707,7 @@ 61: Environment variables: 61: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 61: Test timeout computed to be: 3000 -61/65 Test #61: test_python_fbc_fbc_example1 .................. Passed 0.20 sec +61/65 Test #61: test_python_fbc_fbc_example1 .................. Passed 0.35 sec test 62 Start 62: test_python_groups_groups_example1 @@ -178680,7 +178716,7 @@ 62: Environment variables: 62: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 62: Test timeout computed to be: 3000 -62/65 Test #62: test_python_groups_groups_example1 ............ Passed 0.20 sec +62/65 Test #62: test_python_groups_groups_example1 ............ Passed 0.33 sec test 63 Start 63: test_python_layout_example1_L3 @@ -178689,7 +178725,7 @@ 63: Environment variables: 63: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 63: Test timeout computed to be: 3000 -63/65 Test #63: test_python_layout_example1_L3 ................ Passed 0.20 sec +63/65 Test #63: test_python_layout_example1_L3 ................ Passed 0.17 sec test 64 Start 64: test_python_layout_example1 @@ -178698,7 +178734,7 @@ 64: Environment variables: 64: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 64: Test timeout computed to be: 3000 -64/65 Test #64: test_python_layout_example1 ................... Passed 0.19 sec +64/65 Test #64: test_python_layout_example1 ................... Passed 0.17 sec test 65 Start 65: test_python_qual_qual_example1 @@ -178707,11 +178743,11 @@ 65: Environment variables: 65: PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python: 65: Test timeout computed to be: 3000 -65/65 Test #65: test_python_qual_qual_example1 ................ Passed 0.19 sec +65/65 Test #65: test_python_qual_qual_example1 ................ Passed 0.16 sec 100% tests passed, 0 tests failed out of 65 -Total Test time (real) = 38.21 sec +Total Test time (real) = 103.14 sec make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.4+dfsg/build' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddir=build -O--buildsystem=cmake -O--no-parallel @@ -179300,7 +179336,8 @@ mv /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/*/${pyv}/site-packages/* /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/${pyv}/dist-packages ; \ fi ; \ done -+ [ -d /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.13/site-packages/ ] ++ for pyv in python3.13 ++ '[' -d /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.13/site-packages/ ']' + mkdir -p /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/python3.13/dist-packages + mv /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.13/site-packages/libsbml /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.13/site-packages/libsbml.pth /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/python3.13/dist-packages find /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr -type f -name "*.js" -delete @@ -179331,15 +179368,17 @@ rmdir ${madir}/aarch64-linux-gnu ; \ fi ; \ done -+ find debian -name aarch64-linux-gnu -type d -+ sort -+ uniq -+ [ -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu ] -+ echo Moving contents of wrong directory debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu into place +++ find debian -name aarch64-linux-gnu -type d +++ sort +++ uniq ++ for madir in `find debian -name aarch64-linux-gnu -type d | sort | uniq` ++ '[' -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu ']' ++ echo 'Moving contents of wrong directory debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu into place' Moving contents of wrong directory debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu into place + mv debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu/perl5 debian/tmp/usr/lib/aarch64-linux-gnu + rmdir debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu -+ [ -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu/aarch64-linux-gnu ] ++ for madir in `find debian -name aarch64-linux-gnu -type d | sort | uniq` ++ '[' -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu/aarch64-linux-gnu ']' find debian -type f -name "_form*" -delete make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.4+dfsg' dh_install -O--builddir=build -O--buildsystem=cmake -O--no-parallel @@ -179404,19 +179443,19 @@ dh_gencontrol -O--builddir=build -O--buildsystem=cmake -O--no-parallel dh_md5sums -O--builddir=build -O--buildsystem=cmake -O--no-parallel dh_builddeb -O--builddir=build -O--buildsystem=cmake -O--no-parallel -dpkg-deb: building package 'libsbml5-dev' in '../libsbml5-dev_5.20.4+dfsg-0.1_arm64.deb'. +dpkg-deb: building package 'libsbml5-perl-doc' in '../libsbml5-perl-doc_5.20.4+dfsg-0.1_all.deb'. dpkg-deb: building package 'libsbml5t64-dbgsym' in '../libsbml5t64-dbgsym_5.20.4+dfsg-0.1_arm64.deb'. +dpkg-deb: building package 'libsbml5-dev' in '../libsbml5-dev_5.20.4+dfsg-0.1_arm64.deb'. +dpkg-deb: building package 'libsbml5-perl-dbgsym' in '../libsbml5-perl-dbgsym_5.20.4+dfsg-0.1_arm64.deb'. dpkg-deb: building package 'python3-sbml5-dbgsym' in '../python3-sbml5-dbgsym_5.20.4+dfsg-0.1_arm64.deb'. -dpkg-deb: building package 'libsbml5-examples' in '../libsbml5-examples_5.20.4+dfsg-0.1_all.deb'. dpkg-deb: building package 'libsbml5-java-dbgsym' in '../libsbml5-java-dbgsym_5.20.4+dfsg-0.1_arm64.deb'. -dpkg-deb: building package 'libsbml5-perl-dbgsym' in '../libsbml5-perl-dbgsym_5.20.4+dfsg-0.1_arm64.deb'. -dpkg-deb: building package 'libsbml5-perl-doc' in '../libsbml5-perl-doc_5.20.4+dfsg-0.1_all.deb'. +dpkg-deb: building package 'libsbml5-examples' in '../libsbml5-examples_5.20.4+dfsg-0.1_all.deb'. dpkg-deb: building package 'libsbml5-doc' in '../libsbml5-doc_5.20.4+dfsg-0.1_all.deb'. -dpkg-deb: building package 'libsbml5t64' in '../libsbml5t64_5.20.4+dfsg-0.1_arm64.deb'. -dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.4+dfsg-0.1_arm64.deb'. -dpkg-deb: building package 'libsbml5-octave' in '../libsbml5-octave_5.20.4+dfsg-0.1_arm64.deb'. dpkg-deb: building package 'python3-sbml5' in '../python3-sbml5_5.20.4+dfsg-0.1_arm64.deb'. +dpkg-deb: building package 'libsbml5-octave' in '../libsbml5-octave_5.20.4+dfsg-0.1_arm64.deb'. dpkg-deb: building package 'libsbml5-perl' in '../libsbml5-perl_5.20.4+dfsg-0.1_arm64.deb'. +dpkg-deb: building package 'libsbml5t64' in '../libsbml5t64_5.20.4+dfsg-0.1_arm64.deb'. +dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.4+dfsg-0.1_arm64.deb'. dpkg-deb: building package 'python3-sbml5-doc' in '../python3-sbml5-doc_5.20.4+dfsg-0.1_all.deb'. dpkg-genbuildinfo --build=binary -O../libsbml_5.20.4+dfsg-0.1_arm64.buildinfo dpkg-genchanges --build=binary -O../libsbml_5.20.4+dfsg-0.1_arm64.changes @@ -179426,12 +179465,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3665376/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3665376/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1241816 and its subdirectories -I: Current time: Thu Feb 12 00:49:44 -12 2026 -I: pbuilder-time-stamp: 1770900584 +I: removing directory /srv/workspace/pbuilder/3665376 and its subdirectories +I: Current time: Fri Feb 13 05:34:54 +14 2026 +I: pbuilder-time-stamp: 1770910494