Diff of the two buildlogs: -- --- b1/build.log 2024-11-08 23:05:50.227978669 +0000 +++ b2/build.log 2024-11-08 23:07:55.767501836 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 8 11:03:43 -12 2024 -I: pbuilder-time-stamp: 1731107023 +I: Current time: Fri Dec 12 19:28:53 +14 2025 +I: pbuilder-time-stamp: 1765517333 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying spelling2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1426732/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1261435/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 12 05:29 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1261435/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1261435/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='bdcf337a851344d4af51944a33c41898' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1426732' - PS1='# ' - PS2='> ' + INVOCATION_ID=db3d7366914a418496d1a0dae2f8abc0 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1261435 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7gMyI2sG/pbuilderrc_XbGo --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7gMyI2sG/b1 --logfile b1/build.log libgo-perl_0.15-10.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7gMyI2sG/pbuilderrc_HOgW --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7gMyI2sG/b2 --logfile b2/build.log libgo-perl_0.15-10.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1426732/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1261435/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -202,7 +234,7 @@ Get: 71 http://deb.debian.org/debian unstable/main arm64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 rename all 2.02-1 [21.8 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 xsltproc arm64 1.1.35-1.1+b1 [115 kB] -Fetched 26.9 MB in 1s (36.7 MB/s) +Fetched 26.9 MB in 0s (85.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20089 files and directories currently installed.) @@ -526,7 +558,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgo-perl_0.15-10_source.changes +I: user script /srv/workspace/pbuilder/1261435/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1261435/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libgo-perl_0.15-10_source.changes dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-10 dpkg-buildpackage: info: source distribution unstable @@ -550,109 +586,109 @@ dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' +cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm +cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm +cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm +cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm +cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm +cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm +cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm +cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm +cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm -cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm -cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm -cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm -cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm -cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm +cp GO/Basic.pm blib/lib/GO/Basic.pm cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm -cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm -cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm +cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm +cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm +cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm +cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm +cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm +cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm +cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm +cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm +cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm -cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm -cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm -cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm -cp GO/Basic.pm blib/lib/GO/Basic.pm -cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm -cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm -cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm -cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm -cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm -cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm -cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm +cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm +cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm -cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm -cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm -cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm -cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm +cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm +cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm +cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm +cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm +cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm +cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm -cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm -cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm -cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm -cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm -cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm -cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm -cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm -cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm -cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm +cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm +cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm +cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm +cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm +cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm +cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm +cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm +cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm +cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm -cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm -cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm -cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm -cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm -cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm -cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm -cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm -cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm -cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm -cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm -cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm -cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm -cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm -cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm -cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm -cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm -cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm -cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm -cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm -cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm -cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm +cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm +cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm +cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm +cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm +cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm +cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm +cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm +cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm +cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm +cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm cp GO/Parser.pm blib/lib/GO/Parser.pm -cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm -cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm -cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm +cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm +cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm -cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm -cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm -cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm +cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm +cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm -cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm -cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm -cp go-perl.pod blib/lib/go-perl.pod -cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl -cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl +cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm +cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm +cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm +cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm +cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm +cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm +cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm +cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm +cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm +cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl +cp GO/Utils.pm blib/lib/GO/Utils.pm +cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm +cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl +cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl +cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm +cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl -cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm -cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm -cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl -cp GO/Utils.pm blib/lib/GO/Utils.pm +cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl +cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl -cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl +cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl +cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl -cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm -cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl -cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm -cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl -cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm -cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl +cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm +cp go-perl.pod blib/lib/go-perl.pod +cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl +cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl cp scripts/go-apply-xslt blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl @@ -670,8 +706,8 @@ cp scripts/go2chadoxml blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml cp scripts/go2error_report blib/script/go2error_report -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report cp scripts/go2fmt.pl blib/script/go2fmt.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl cp scripts/go2godb_prestore blib/script/go2godb_prestore "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore @@ -686,8 +722,8 @@ cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl cp scripts/go2pathlist blib/script/go2pathlist -cp scripts/go2prolog blib/script/go2prolog "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist +cp scripts/go2prolog blib/script/go2prolog "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog cp scripts/go2rdf blib/script/go2rdf "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf @@ -716,8 +752,8 @@ t/t010build.t ............ 1..6 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:24 2024 -# Current time GMT: Fri Nov 8 23:05:24 2024 +# Current time local: Fri Dec 12 05:30:26 2025 +# Current time GMT: Fri Dec 12 05:30:26 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -729,8 +765,8 @@ t/t020paths.t ............ 1..7 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:25 2024 -# Current time GMT: Fri Nov 8 23:05:25 2024 +# Current time local: Fri Dec 12 05:30:27 2025 +# Current time GMT: Fri Dec 12 05:30:27 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -743,8 +779,8 @@ t/t030detecterror.t ...... 1..4 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:25 2024 -# Current time GMT: Fri Nov 8 23:05:25 2024 +# Current time local: Fri Dec 12 05:30:27 2025 +# Current time GMT: Fri Dec 12 05:30:27 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -786,234 +822,234 @@ t/t050oboformat.t ........ 1..6 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:25 2024 -# Current time GMT: Fri Nov 8 23:05:25 2024 +# Current time local: Fri Dec 12 05:30:27 2025 +# Current time GMT: Fri Dec 12 05:30:27 2025 # Using Test.pm version 1.31 ok 1 ok 2 +ROOT: molecular_function ROOT: cellular_component ROOT: biological_process -ROOT: molecular_function ok 3 ok 4 -EDGE|GO:0003691|GO:0003720|is_a -EDGE|GO:0003721|GO:0003720|is_a -EDGE|GO:0003720|GO:0003677|is_a -EDGE|GO:0005623|GO:0005575|is_a -EDGE|GO:0003718|GO:0003715|is_a -EDGE|GO:0008111|GO:0003824|is_a -EDGE|GO:0003832|GO:0003824|is_a -EDGE|GO:0003717|GO:0003715|is_a -EDGE|GO:0003716|GO:0003715|is_a -EDGE|GO:0003718|GO:0003715|is_a -EDGE|GO:0003715|GO:0003700|is_a -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008263|GO:0008578|is_a -EDGE|GO:0008263|GO:0003686|is_a -EDGE|GO:0000299|GO:0005624|is_a -EDGE|GO:0008464|GO:0003824|is_a -EDGE|GO:0003833|GO:0003824|is_a -EDGE|GO:0000267|GO:0005623|part_of +EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0005933|GO:0005623|part_of +EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0005623|GO:0005575|is_a -EDGE|GO:0003717|GO:0003715|is_a -EDGE|GO:0008456|GO:0003824|is_a -EDGE|GO:0003907|GO:0008578|is_a -EDGE|GO:0003907|GO:0003686|is_a -EDGE|GO:0000133|GO:0005934|part_of -EDGE|GO:0005934|GO:0005933|part_of -EDGE|GO:0005934|GO:0000134|is_a -EDGE|GO:0008301|GO:0003677|is_a +EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0003689|GO:0003687|is_a +EDGE|GO:0003688|GO:0003687|is_a +EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003680|GO:0003677|is_a -EDGE|GO:0003710|GO:0003700|is_a -EDGE|GO:0003711|GO:0003700|is_a -EDGE|GO:0003709|GO:0003700|is_a -EDGE|GO:0003715|GO:0003700|is_a -EDGE|GO:0003701|GO:0003700|is_a +EDGE|GO:0003907|GO:0003686|is_a +EDGE|GO:0003907|GO:0008578|is_a +EDGE|GO:0000133|GO:0005934|part_of +EDGE|GO:0005934|GO:0000134|is_a +EDGE|GO:0005934|GO:0005933|part_of +EDGE|GO:0003676|GO:0003674|is_a +EDGE|GO:0003824|GO:0003674|is_a +EDGE|GO:0003703|GO:0003702|is_a +EDGE|GO:0003706|GO:0003702|is_a +EDGE|GO:0003705|GO:0003702|is_a +EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003702|GO:0003700|is_a -EDGE|GO:0003700|GO:0003677|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0000217|GO:0003677|is_a -EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003692|GO:0003677|is_a -EDGE|GO:0003687|GO:0003677|is_a +EDGE|GO:0003693|GO:0003677|is_a +EDGE|GO:0003703|GO:0003702|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0005626|GO:0000267|is_a +EDGE|GO:0008461|GO:0003824|is_a +EDGE|GO:0003691|GO:0003720|is_a +EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0003701|GO:0003700|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0003721|GO:0003964|is_a +EDGE|GO:0003721|GO:0003720|is_a +EDGE|GO:0003707|GO:0003706|is_a +EDGE|GO:0003708|GO:0003706|is_a +EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003695|GO:0003677|is_a -EDGE|GO:0003690|GO:0003677|is_a +EDGE|GO:0008416|GO:0003824|is_a +EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003696|GO:0003677|is_a -EDGE|GO:0003697|GO:0003677|is_a -EDGE|GO:0008301|GO:0003677|is_a -EDGE|GO:0003685|GO:0003677|is_a -EDGE|GO:0003693|GO:0003677|is_a -EDGE|GO:0003680|GO:0003677|is_a -EDGE|GO:0003700|GO:0003677|is_a -EDGE|GO:0000182|GO:0003677|is_a -EDGE|GO:0000217|GO:0003677|is_a -EDGE|GO:0003720|GO:0003677|is_a -EDGE|GO:0003694|GO:0003677|is_a -EDGE|GO:0003681|GO:0003677|is_a -EDGE|GO:0003678|GO:0003677|is_a -EDGE|GO:0003682|GO:0003677|is_a -EDGE|GO:0003677|GO:0003676|is_a +EDGE|GO:0003708|GO:0003706|is_a +EDGE|GO:0003708|GO:0004879|is_a +EDGE|GO:0003834|GO:0003824|is_a +EDGE|GO:0005623|GO:0005575|is_a +EDGE|GO:0008534|GO:0008578|is_a +EDGE|GO:0004844|GO:0008578|is_a +EDGE|GO:0003907|GO:0008578|is_a +EDGE|GO:0008263|GO:0008578|is_a +EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0003839|GO:0003824|is_a -EDGE|GO:0008148|GO:0003711|is_a -EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003690|GO:0003677|is_a -EDGE|GO:0000144|GO:0000142|part_of -EDGE|GO:0000144|GO:0030481|is_a -EDGE|GO:0008159|GO:0003711|is_a -EDGE|GO:0008148|GO:0003711|is_a +EDGE|GO:0003710|GO:0003700|is_a +EDGE|GO:0003701|GO:0003700|is_a +EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0003711|GO:0003700|is_a -EDGE|GO:0003837|GO:0003824|is_a -EDGE|GO:0003678|GO:0004386|is_a -EDGE|GO:0003678|GO:0003677|is_a -EDGE|GO:0003694|GO:0003677|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0003715|GO:0003700|is_a +EDGE|GO:0003702|GO:0003700|is_a +EDGE|GO:0003700|GO:0003677|is_a +EDGE|GO:0003707|GO:0003706|is_a +EDGE|GO:0003707|GO:0004879|is_a +EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0003834|GO:0003824|is_a -EDGE|GO:0003904|GO:0003824|is_a +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0003683|GO:0003682|is_a +EDGE|GO:0003683|GO:0003682|is_a +EDGE|GO:0003682|GO:0003677|is_a +EDGE|GO:0003691|GO:0003720|is_a +EDGE|GO:0003721|GO:0003720|is_a +EDGE|GO:0003720|GO:0003677|is_a +EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0008578|GO:0003824|is_a -EDGE|GO:0003908|GO:0003824|is_a +EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0008111|GO:0003824|is_a -EDGE|GO:0003826|GO:0003824|is_a -EDGE|GO:0003840|GO:0003824|is_a +EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0003833|GO:0003824|is_a -EDGE|GO:0003837|GO:0003824|is_a -EDGE|GO:0008456|GO:0003824|is_a +EDGE|GO:0003686|GO:0003824|is_a +EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0003906|GO:0003824|is_a -EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0003905|GO:0003824|is_a -EDGE|GO:0008336|GO:0003824|is_a -EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0008416|GO:0003824|is_a +EDGE|GO:0003908|GO:0003824|is_a +EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0003839|GO:0003824|is_a -EDGE|GO:0003832|GO:0003824|is_a -EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a -EDGE|GO:0003686|GO:0003824|is_a -EDGE|GO:0003824|GO:0003674|is_a -EDGE|GO:0003908|GO:0003824|is_a -EDGE|GO:0003908|GO:0008172|is_a -EDGE|GO:0003696|GO:0003677|is_a +EDGE|GO:0008461|GO:0003824|is_a +EDGE|GO:0003834|GO:0003824|is_a +EDGE|GO:0003904|GO:0003824|is_a +EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0003826|GO:0003824|is_a -EDGE|GO:0004844|GO:0003686|is_a -EDGE|GO:0004844|GO:0008578|is_a -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008488|GO:0003824|is_a +EDGE|GO:0008456|GO:0003824|is_a +EDGE|GO:0003824|GO:0003674|is_a +EDGE|GO:0003839|GO:0003824|is_a +EDGE|GO:0008301|GO:0003677|is_a +EDGE|GO:0000144|GO:0000142|part_of +EDGE|GO:0000142|GO:0030480|is_a +EDGE|GO:0000142|GO:0005935|part_of +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0000182|GO:0003677|is_a +EDGE|GO:0000299|GO:0005624|is_a +EDGE|GO:0003681|GO:0003677|is_a +EDGE|GO:0008263|GO:0003686|is_a +EDGE|GO:0008263|GO:0008578|is_a +EDGE|GO:0003688|GO:0003687|is_a +EDGE|GO:0008336|GO:0003824|is_a +EDGE|GO:0003686|GO:0003685|is_a +EDGE|GO:0003685|GO:0003677|is_a +EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0004844|GO:0003686|is_a -EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0003686|GO:0003685|is_a -EDGE|GO:0003707|GO:0003706|is_a -EDGE|GO:0003708|GO:0003706|is_a -EDGE|GO:0003706|GO:0003702|is_a -EDGE|GO:0008336|GO:0003824|is_a +EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0003905|GO:0003824|is_a +EDGE|GO:0003908|GO:0008172|is_a +EDGE|GO:0003908|GO:0003824|is_a +EDGE|GO:0003684|GO:0003677|is_a +EDGE|GO:0008301|GO:0003677|is_a +EDGE|GO:0003678|GO:0003677|is_a +EDGE|GO:0003694|GO:0003677|is_a +EDGE|GO:0003685|GO:0003677|is_a +EDGE|GO:0003682|GO:0003677|is_a +EDGE|GO:0003720|GO:0003677|is_a +EDGE|GO:0003693|GO:0003677|is_a +EDGE|GO:0003696|GO:0003677|is_a +EDGE|GO:0003692|GO:0003677|is_a +EDGE|GO:0003695|GO:0003677|is_a +EDGE|GO:0003680|GO:0003677|is_a +EDGE|GO:0000182|GO:0003677|is_a +EDGE|GO:0003687|GO:0003677|is_a +EDGE|GO:0003697|GO:0003677|is_a +EDGE|GO:0000217|GO:0003677|is_a +EDGE|GO:0003700|GO:0003677|is_a +EDGE|GO:0003690|GO:0003677|is_a +EDGE|GO:0003681|GO:0003677|is_a +EDGE|GO:0003677|GO:0003676|is_a +EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0003684|GO:0003677|is_a -EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0003716|GO:0003715|is_a +EDGE|GO:0003904|GO:0003913|is_a +EDGE|GO:0003904|GO:0003824|is_a +EDGE|GO:0003833|GO:0003824|is_a +EDGE|GO:0003832|GO:0003824|is_a +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0003689|GO:0003687|is_a +EDGE|GO:0005626|GO:0000267|is_a +EDGE|GO:0005624|GO:0000267|is_a +EDGE|GO:0000267|GO:0005623|part_of +EDGE|GO:0003826|GO:0003824|is_a +EDGE|GO:0003825|GO:0003824|is_a +EDGE|GO:0003717|GO:0003715|is_a +EDGE|GO:0003710|GO:0003700|is_a +EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0000144|GO:0000142|part_of -EDGE|GO:0000142|GO:0005935|part_of -EDGE|GO:0000142|GO:0030480|is_a -EDGE|GO:0003693|GO:0003677|is_a -EDGE|GO:0008534|GO:0008578|is_a -EDGE|GO:0004844|GO:0008578|is_a -EDGE|GO:0003907|GO:0008578|is_a -EDGE|GO:0008263|GO:0008578|is_a -EDGE|GO:0008578|GO:0003824|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0043025|GO:0005623|part_of -EDGE|GO:0003683|GO:0003682|is_a -EDGE|GO:0003703|GO:0003702|is_a -EDGE|GO:0000150|GO:0003690|is_a +EDGE|GO:0000144|GO:0030481|is_a +EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0000133|GO:0005938|part_of -EDGE|GO:0000133|GO:0005935|part_of -EDGE|GO:0003701|GO:0003700|is_a -EDGE|GO:0003681|GO:0003677|is_a -EDGE|GO:0003683|GO:0003682|is_a -EDGE|GO:0003682|GO:0003677|is_a -EDGE|GO:0003703|GO:0003702|is_a -EDGE|GO:0003704|GO:0003702|is_a -EDGE|GO:0003706|GO:0003702|is_a -EDGE|GO:0003705|GO:0003702|is_a -EDGE|GO:0003702|GO:0003700|is_a -EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005934|GO:0005933|part_of +EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005933|GO:0005623|part_of -EDGE|GO:0003710|GO:0003700|is_a -EDGE|GO:0008159|GO:0003711|is_a -EDGE|GO:0008416|GO:0003824|is_a -EDGE|GO:0003692|GO:0003677|is_a -EDGE|GO:0003691|GO:0003720|is_a -EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0003694|GO:0003677|is_a +EDGE|GO:0003704|GO:0003702|is_a +EDGE|GO:0008456|GO:0003824|is_a +EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0005624|GO:0000267|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a -EDGE|GO:0003697|GO:0003677|is_a -EDGE|GO:0005626|GO:0000267|is_a -EDGE|GO:0003834|GO:0003824|is_a -EDGE|GO:0000182|GO:0003677|is_a -EDGE|GO:0008534|GO:0008578|is_a +EDGE|GO:0008148|GO:0003711|is_a +EDGE|GO:0008159|GO:0003711|is_a +EDGE|GO:0003711|GO:0003700|is_a +EDGE|GO:0008464|GO:0003824|is_a +EDGE|GO:0003718|GO:0003715|is_a +EDGE|GO:0003716|GO:0003715|is_a +EDGE|GO:0003717|GO:0003715|is_a +EDGE|GO:0003718|GO:0003715|is_a +EDGE|GO:0003715|GO:0003700|is_a +EDGE|GO:0003716|GO:0003715|is_a +EDGE|GO:0008148|GO:0003711|is_a +EDGE|GO:0008159|GO:0003711|is_a +EDGE|GO:0043025|GO:0005623|part_of +EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005935|GO:0000134|is_a -EDGE|GO:0003689|GO:0003687|is_a -EDGE|GO:0003688|GO:0003687|is_a -EDGE|GO:0003687|GO:0003677|is_a -EDGE|GO:0003707|GO:0004879|is_a -EDGE|GO:0003707|GO:0003706|is_a -EDGE|GO:0005626|GO:0000267|is_a -EDGE|GO:0005624|GO:0000267|is_a -EDGE|GO:0000267|GO:0005623|part_of -EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a -EDGE|GO:0003906|GO:0003824|is_a -EDGE|GO:0003676|GO:0003674|is_a -EDGE|GO:0003824|GO:0003674|is_a -EDGE|GO:0003840|GO:0003824|is_a -EDGE|GO:0003709|GO:0003700|is_a -EDGE|GO:0003689|GO:0003687|is_a -EDGE|GO:0003686|GO:0003685|is_a -EDGE|GO:0003685|GO:0003677|is_a -EDGE|GO:0003705|GO:0003702|is_a -EDGE|GO:0003721|GO:0003964|is_a -EDGE|GO:0003721|GO:0003720|is_a -EDGE|GO:0003904|GO:0003824|is_a -EDGE|GO:0003904|GO:0003913|is_a +EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003676|GO:0003674|is_a +EDGE|GO:0003678|GO:0003677|is_a +EDGE|GO:0003678|GO:0004386|is_a EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0003695|GO:0003677|is_a -EDGE|GO:0003825|GO:0003824|is_a -EDGE|GO:0003688|GO:0003687|is_a -EDGE|GO:0003708|GO:0004879|is_a -EDGE|GO:0003708|GO:0003706|is_a -EDGE|GO:0008461|GO:0003824|is_a +EDGE|GO:0004844|GO:0008578|is_a +EDGE|GO:0004844|GO:0003686|is_a +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008534|GO:0008578|is_a +EDGE|GO:0008111|GO:0003824|is_a +EDGE|GO:0000150|GO:0003690|is_a total parent rels:118 total (both ways):218 ok 5 @@ -1022,118 +1058,118 @@ t/t060oboformat2.t ....... 1..36 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:25 2024 -# Current time GMT: Fri Nov 8 23:05:25 2024 +# Current time local: Fri Dec 12 05:30:28 2025 +# Current time GMT: Fri Dec 12 05:30:28 2025 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 ROOT: root -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: 1-phosphatidylinositol-4-phosphate kinase +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: Part of TERMS: 29 -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0042596|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0009414|is_a -EDGE|GO:0042630|GO:0007610|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a -DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048150|GO:0045472|is_a +SYNS:FAKE:0001|fake synonym|class I PI3K +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0035094|is_a +EDGE|GO:0035095|GO:0030534|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0042594|is_a +EDGE|GO:0042595|GO:0007631|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0048150|GO:0030534|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0048266|GO:0048265|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008343|GO:0007631|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007636|GO:0007635|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a -SYNS:FAKE:0001|fake synonym|class I PI3K -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:ai -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a +DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a -EDGE|GO:0008344|GO:0030534|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0042630|GO:0009414|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a DEFXREFS:GO:curators EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0035094|is_a -EDGE|GO:0035095|GO:0030534|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0048266|GO:0007610|is_a +DEFXREFS:GO:mah|ISBN:0877797099 +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a +DEFXREFS:GO:ai EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a +DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1157,112 +1193,112 @@ ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 -ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: Part of -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase +ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: root +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0009414|is_a +EDGE|GO:0042630|GO:0007610|is_a DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0042595|GO:0042594|is_a +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a -DEFXREFS:GO:ai -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008344|GO:0007626|is_a -DEFXREFS:GO:curators -EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a -SYNS:class I PI3K|fake synonym|FAKE:0001 -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0035094|is_a -EDGE|GO:0035095|GO:0030534|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0048266|GO:0048265|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a -DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048150|GO:0045472|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of SYNS:drinking|eating DEFXREFS:GO:mah -EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0008343|GO:0030534|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0048266|GO:0048265|is_a +DEFXREFS:GO:ai +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008344|GO:0007626|is_a +DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0009414|is_a -EDGE|GO:0042630|GO:0007610|is_a +SYNS:class I PI3K|fake synonym|FAKE:0001 +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a +DEFXREFS:GO:jic +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1287,111 +1323,111 @@ Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 ROOT: root -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: 1-phosphatidylinositol-4-phosphate kinase +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: Part of TERMS: 29 -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0001662|GO:0042596|is_a -DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0008344|GO:0030534|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008343|GO:0007631|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a +SYNS:fake synonym|class I PI3K|FAKE:0001 +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a +DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0009414|is_a -EDGE|GO:0042630|GO:0007610|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0048150|GO:0030534|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0048266|GO:0048265|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007636|GO:0007635|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008343|GO:0007631|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a +SYNS:behaviour +DEFXREFS:WB:ems|ISBN:0395448956 +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a +DEFXREFS:GO:curators +EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a -DEFXREFS:GO:ai +DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0048266|GO:0007610|is_a +DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a -SYNS:fake synonym|FAKE:0001|class I PI3K -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0045471|is_a -EDGE|GO:0048149|GO:0030534|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0008344|GO:0007626|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a -DEFXREFS:ISBN:0198506732|FB:bf +DEFXREFS:GO:mah|ISBN:0877797099 +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a -SYNS:behaviour -DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1415,8 +1451,8 @@ t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:26 2024 -# Current time GMT: Fri Nov 8 23:05:26 2024 +# Current time local: Fri Dec 12 05:30:28 2025 +# Current time GMT: Fri Dec 12 05:30:28 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1808,8 +1844,8 @@ t/t080gofmt2.t ........... 1..3 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:26 2024 -# Current time GMT: Fri Nov 8 23:05:26 2024 +# Current time local: Fri Dec 12 05:30:29 2025 +# Current time GMT: Fri Dec 12 05:30:29 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1863,8 +1899,8 @@ t/t100roundtrip.t ........ 1..2 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:26 2024 -# Current time GMT: Fri Nov 8 23:05:26 2024 +# Current time local: Fri Dec 12 05:30:29 2025 +# Current time GMT: Fri Dec 12 05:30:29 2025 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml @@ -1892,8 +1928,8 @@ t/t110basic.t ............ 1..4 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:27 2024 -# Current time GMT: Fri Nov 8 23:05:27 2024 +# Current time local: Fri Dec 12 05:30:31 2025 +# Current time GMT: Fri Dec 12 05:30:31 2025 # Using Test.pm version 1.31 GO:0016604 GO:0016604 @@ -1911,8 +1947,8 @@ t/t130relations.t ........ 1..7 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:28 2024 -# Current time GMT: Fri Nov 8 23:05:28 2024 +# Current time local: Fri Dec 12 05:30:31 2025 +# Current time GMT: Fri Dec 12 05:30:31 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1926,8 +1962,8 @@ t/t140subgraph.t ......... 1..1 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:28 2024 -# Current time GMT: Fri Nov 8 23:05:28 2024 +# Current time local: Fri Dec 12 05:30:32 2025 +# Current time GMT: Fri Dec 12 05:30:32 2025 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 @@ -1939,8 +1975,8 @@ t/t150xref.t ............. 1..2 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:28 2024 -# Current time GMT: Fri Nov 8 23:05:28 2024 +# Current time local: Fri Dec 12 05:30:32 2025 +# Current time GMT: Fri Dec 12 05:30:32 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1948,8 +1984,8 @@ t/t160logicaldef.t ....... 1..5 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:29 2024 -# Current time GMT: Fri Nov 8 23:05:29 2024 +# Current time local: Fri Dec 12 05:30:33 2025 +# Current time GMT: Fri Dec 12 05:30:33 2025 # Using Test.pm version 1.31 ok 1 ns: biological_process @@ -1965,8 +2001,8 @@ t/t170chadoxml.t ......... 1..9 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:29 2024 -# Current time GMT: Fri Nov 8 23:05:29 2024 +# Current time local: Fri Dec 12 05:30:33 2025 +# Current time GMT: Fri Dec 12 05:30:33 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1981,8 +2017,8 @@ t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:29 2024 -# Current time GMT: Fri Nov 8 23:05:29 2024 +# Current time local: Fri Dec 12 05:30:34 2025 +# Current time GMT: Fri Dec 12 05:30:34 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1997,8 +2033,8 @@ t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:30 2024 -# Current time GMT: Fri Nov 8 23:05:30 2024 +# Current time local: Fri Dec 12 05:30:34 2025 +# Current time GMT: Fri Dec 12 05:30:34 2025 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 @@ -2010,8 +2046,8 @@ t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:31 2024 -# Current time GMT: Fri Nov 8 23:05:31 2024 +# Current time local: Fri Dec 12 05:30:35 2025 +# Current time GMT: Fri Dec 12 05:30:35 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2019,8 +2055,8 @@ t/t210cache.t ............ 1..6 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:31 2024 -# Current time GMT: Fri Nov 8 23:05:31 2024 +# Current time local: Fri Dec 12 05:30:35 2025 +# Current time GMT: Fri Dec 12 05:30:35 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2032,8 +2068,8 @@ t/t220xref_esc.t ......... 1..6 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:31 2024 -# Current time GMT: Fri Nov 8 23:05:31 2024 +# Current time local: Fri Dec 12 05:30:36 2025 +# Current time GMT: Fri Dec 12 05:30:36 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2047,8 +2083,8 @@ t/t230term_expression.t .. 1..1 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:32 2024 -# Current time GMT: Fri Nov 8 23:05:32 2024 +# Current time local: Fri Dec 12 05:30:36 2025 +# Current time GMT: Fri Dec 12 05:30:36 2025 # Using Test.pm version 1.31 @@ -2143,8 +2179,8 @@ t/t240ga2obj.t ........... 1..3 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:32 2024 -# Current time GMT: Fri Nov 8 23:05:32 2024 +# Current time local: Fri Dec 12 05:30:36 2025 +# Current time GMT: Fri Dec 12 05:30:36 2025 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2153,8 +2189,8 @@ t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:32 2024 -# Current time GMT: Fri Nov 8 23:05:32 2024 +# Current time local: Fri Dec 12 05:30:37 2025 +# Current time GMT: Fri Dec 12 05:30:37 2025 # Using Test.pm version 1.31 @@ -2206,8 +2242,8 @@ t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:33 2024 -# Current time GMT: Fri Nov 8 23:05:33 2024 +# Current time local: Fri Dec 12 05:30:37 2025 +# Current time GMT: Fri Dec 12 05:30:37 2025 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ @@ -2255,8 +2291,8 @@ t/t290disjoint.t ......... 1..2 # Running under perl version 5.040000 for linux -# Current time local: Fri Nov 8 23:05:33 2024 -# Current time GMT: Fri Nov 8 23:05:33 2024 +# Current time local: Fri Dec 12 05:30:38 2025 +# Current time GMT: Fri Dec 12 05:30:38 2025 # Using Test.pm version 1.31 ok 1 GO:0009987 @@ -2264,7 +2300,7 @@ ok 2 ok All tests successful. -Files=24, Tests=140, 10 wallclock secs ( 0.09 usr 0.05 sys + 2.38 cusr 0.31 csys = 2.83 CPU) +Files=24, Tests=140, 12 wallclock secs ( 0.10 usr 0.03 sys + 2.37 cusr 0.24 csys = 2.74 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp @@ -2277,107 +2313,107 @@ Manifying 33 pod documents Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p @@ -2459,31 +2495,31 @@ Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' debian/rules override_dh_install @@ -2513,12 +2549,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1261435/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1261435/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1426732 and its subdirectories -I: Current time: Fri Nov 8 11:05:49 -12 2024 -I: pbuilder-time-stamp: 1731107149 +I: removing directory /srv/workspace/pbuilder/1261435 and its subdirectories +I: Current time: Fri Dec 12 19:30:54 +14 2025 +I: pbuilder-time-stamp: 1765517454