Diff of the two buildlogs: -- --- b1/build.log 2024-11-25 13:08:32.838253446 +0000 +++ b2/build.log 2024-11-25 13:09:58.818384494 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Nov 25 01:07:47 -12 2024 -I: pbuilder-time-stamp: 1732540067 +I: Current time: Tue Nov 26 03:08:36 +14 2024 +I: pbuilder-time-stamp: 1732540116 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying spelling I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3998314/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3750998/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 25 13:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3750998/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3750998/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='8a48c9e8161d4996846e69acea44ed00' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3998314' - PS1='# ' - PS2='> ' + INVOCATION_ID=7aa5b218b5c340918e3236d6c09d220a + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3750998 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.S6CPthtn/pbuilderrc_vxAW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.S6CPthtn/b1 --logfile b1/build.log libbpp-popgen_2.4.1-11.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.S6CPthtn/pbuilderrc_8gSk --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.S6CPthtn/b2 --logfile b2/build.log libbpp-popgen_2.4.1-11.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3998314/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/3750998/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -176,7 +208,7 @@ Get: 56 http://deb.debian.org/debian unstable/main arm64 libbpp-core-dev arm64 2.4.1-13+b1 [941 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libbpp-seq12t64 arm64 2.4.1-13 [452 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libbpp-seq-dev arm64 2.4.1-13 [724 kB] -Fetched 37.8 MB in 0s (126 MB/s) +Fetched 37.8 MB in 0s (105 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20083 files and directories currently installed.) @@ -423,7 +455,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbpp-popgen-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-popgen_2.4.1-11_source.changes +I: user script /srv/workspace/pbuilder/3750998/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3750998/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbpp-popgen-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbpp-popgen_2.4.1-11_source.changes dpkg-buildpackage: info: source package libbpp-popgen dpkg-buildpackage: info: source version 2.4.1-11 dpkg-buildpackage: info: source distribution unstable @@ -463,7 +499,7 @@ -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) --- Configuring done (0.6s) +-- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -482,47 +518,57 @@ make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend -make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-popgen-2.4.1 /build/reproducible-path/libbpp-popgen-2.4.1/src /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-popgen-static.dir/DependInfo.cmake "--color=" +make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-popgen-2.4.1 /build/reproducible-path/libbpp-popgen-2.4.1/src /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-popgen-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/build +make[3]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu' -[ 3%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -[ 3%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -[ 4%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -[ 8%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -[ 8%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -[ 9%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -[ 11%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o +[ 1%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/BasicAlleleInfo.cpp -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/BasicAlleleInfo.cpp +[ 3%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o +[ 4%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o +[ 6%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp -[ 12%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/BasicAlleleInfo.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp -[ 14%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o +[ 8%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o +[ 9%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -MF 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src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ 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src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp -[ 30%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp +[ 32%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ -576,8 +618,8 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' -[ 32%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp +[ 33%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, @@ -595,6 +637,66 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' +[ 35%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, @@ -614,8 +716,31 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -[ 33%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Date.cpp +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +[ 37%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' +[ 38%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp +[ 40%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, @@ -636,13 +761,15 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' +[ 41%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ -655,22 +782,6 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp:41: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, @@ -691,25 +802,27 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] +[ 43%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' -[ 35%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, @@ -730,20 +843,6 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' -[ 37%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp -[ 38%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp -[ 40%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp -[ 41%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp -[ 43%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp -[ 45%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/GeneralExceptions.cpp -[ 46%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, @@ -764,20 +863,60 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] +[ 45%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp +[ 46%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp +[ 48%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp +[ 50%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o +[ 51%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp +[ 53%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp +[ 54%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/GeneralExceptions.cpp +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, @@ -798,45 +937,28 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -[ 48%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ -849,56 +971,18 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' -[ 50%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonolocusGenotypeTools.cpp -[ 51%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp -[ 53%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp -[ 54%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp -[ 56%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp -[ 58%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp -[ 59%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp -[ 61%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp -[ 62%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp -[ 64%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp -[ 66%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp -[ 67%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp +[ 56%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp +[ 58%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ -911,58 +995,6 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -[ 69%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp -[ 70%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp -[ 72%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -[ 74%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp -[ 75%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp -[ 77%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, @@ -983,6 +1015,12 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' +[ 59%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp +[ 61%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp +[ 62%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, @@ -1003,28 +1041,12 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' -[ 79%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/GeneralExceptions.cpp +[ 64%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonolocusGenotypeTools.cpp +[ 66%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp +[ 67%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -1039,8 +1061,8 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' -[ 80%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp +[ 69%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, @@ -1061,6 +1083,20 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' +[ 70%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp +[ 72%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp +[ 74%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp +[ 75%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp +[ 77%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp +[ 79%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/GeneralExceptions.cpp +[ 80%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o @@ -1213,8 +1249,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libbpp-popgen-dev' in '../libbpp-popgen-dev_2.4.1-11_arm64.deb'. dpkg-deb: building package 'libbpp-popgen8t64' in '../libbpp-popgen8t64_2.4.1-11_arm64.deb'. +dpkg-deb: building package 'libbpp-popgen-dev' in '../libbpp-popgen-dev_2.4.1-11_arm64.deb'. dpkg-deb: building package 'libbpp-popgen8t64-dbgsym' in '../libbpp-popgen8t64-dbgsym_2.4.1-11_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-popgen_2.4.1-11_arm64.buildinfo dpkg-genchanges --build=binary -O../libbpp-popgen_2.4.1-11_arm64.changes @@ -1223,12 +1259,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3750998/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3750998/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3998314 and its subdirectories -I: Current time: Mon Nov 25 01:08:31 -12 2024 -I: pbuilder-time-stamp: 1732540111 +I: removing directory /srv/workspace/pbuilder/3750998 and its subdirectories +I: Current time: Tue Nov 26 03:09:57 +14 2024 +I: pbuilder-time-stamp: 1732540197