Diff of the two buildlogs: -- --- b1/build.log 2024-04-30 08:38:24.441698874 +0000 +++ b2/build.log 2024-04-30 08:51:29.980293909 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 29 20:35:09 -12 2024 -I: pbuilder-time-stamp: 1714466109 +I: Current time: Tue Jun 3 05:01:33 +14 2025 +I: pbuilder-time-stamp: 1748876493 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying gcc-13.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1236570/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3749873/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 2 15:01 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3749873/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3749873/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='8a91174a8b27480385541f8fa60b3c50' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1236570' - PS1='# ' - PS2='> ' + INVOCATION_ID=9ca8abcccb1f46e3b654fdc3d6b7e7e8 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3749873 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9JGcORJ6/pbuilderrc_Oft1 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9JGcORJ6/b1 --logfile b1/build.log kmc_3.2.4+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9JGcORJ6/pbuilderrc_6jG0 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9JGcORJ6/b2 --logfile b2/build.log kmc_3.2.4+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 27 07:42 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1236570/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 30 14:05 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3749873/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -184,7 +216,7 @@ Get: 53 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-5.1 [31.8 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.0-1 [458 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] -Fetched 28.8 MB in 0s (171 MB/s) +Fetched 28.8 MB in 1s (52.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19735 files and directories currently installed.) @@ -426,7 +458,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/kmc-3.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmc_3.2.4+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/3749873/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3749873/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/kmc-3.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kmc_3.2.4+dfsg-1_source.changes dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 3.2.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -488,6 +524,11 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/splitter.cpp -o kmc_core/splitter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_collector.cpp -o kmc_core/kb_collector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kmc_runner.cpp -o kmc_core/kmc_runner.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/raduls_neon.cpp -o kmc_core/raduls_neon.o +In file included from kmc_core/raduls_neon.cpp:12: +kmc_core/raduls_impl.h:766:2: warning: #warning "building raduls radix sort for neon" [-Wcpp] + 766 | #warning "building raduls radix sort for neon" + | ^~~~~~~ kmc_CLI/kmc.cpp: In function 'bool parse_parameters(int, char**, Params&)': kmc_CLI/kmc.cpp:267:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string*, vector<__cxx11::basic_string > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 267 | std::random_shuffle(input_file_names.begin(), input_file_names.end()); @@ -498,21 +539,6 @@ 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, - from kmc_core/develop.cpp:3: -kmc_core/queues.h: In member function 'void CBinDesc::init_random()': -kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 593 | random_shuffle(random_bins.begin(), random_bins.end()); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/algorithm:61, - from /usr/include/c++/13/ext/algorithm:63, - from kmc_core/defs.h:112, - from kmc_core/develop.h:4, - from kmc_core/develop.cpp:2: -/usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here - 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/raduls_neon.cpp -o kmc_core/raduls_neon.o -In file included from kmc_core/params.h:16, from kmc_core/bkb_writer.h:14, from kmc_core/bkb_writer.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': @@ -527,14 +553,16 @@ 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, - from kmc_core/fastq_reader.h:15, - from kmc_core/fastq_reader.cpp:12: + from kmc_core/develop.cpp:3: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, - from kmc_core/fastq_reader.cpp:10: + from /usr/include/c++/13/ext/algorithm:63, + from kmc_core/defs.h:112, + from kmc_core/develop.h:4, + from kmc_core/develop.cpp:2: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ @@ -550,13 +578,9 @@ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ -In file included from kmc_core/raduls_neon.cpp:12: -kmc_core/raduls_impl.h:766:2: warning: #warning "building raduls radix sort for neon" [-Wcpp] - 766 | #warning "building raduls radix sort for neon" - | ^~~~~~~ In file included from kmc_core/params.h:16, - from kmc_core/kb_collector.h:15, - from kmc_core/kb_collector.cpp:11: + from kmc_core/bkb_reader.h:15, + from kmc_core/bkb_reader.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); @@ -564,7 +588,7 @@ In file included from /usr/include/c++/13/algorithm:61, from /usr/include/c++/13/ext/algorithm:63, from kmc_core/defs.h:112, - from kmc_core/kb_collector.h:14: + from kmc_core/params.h:14: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ @@ -581,22 +605,29 @@ 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, - from kmc_core/bkb_reader.h:15, - from kmc_core/bkb_reader.cpp:11: + from kmc_core/fastq_reader.h:15, + from kmc_core/fastq_reader.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, - from /usr/include/c++/13/ext/algorithm:63, - from kmc_core/defs.h:112, - from kmc_core/params.h:14: + from kmc_core/fastq_reader.cpp:10: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/mmer.cpp -o kmc_api/mmer.o In file included from kmc_core/params.h:16, - from kmc_core/kmc.h:15, - from kmc_core/kmc_runner.cpp:12: + from kmc_core/kb_collector.h:15, + from kmc_core/kb_collector.cpp:11: +kmc_core/queues.h: In member function 'void CBinDesc::init_random()': +kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 593 | random_shuffle(random_bins.begin(), random_bins.end()); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from kmc_core/params.h:16, + from kmc_core/kb_collector.h:15, + from kmc_core/splitter.h:16, + from kmc_core/splitter.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); @@ -604,26 +635,20 @@ In file included from /usr/include/c++/13/algorithm:61, from /usr/include/c++/13/ext/algorithm:63, from kmc_core/defs.h:112, - from kmc_core/kmc.h:14: + from kmc_core/splitter.h:14: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/mmer.cpp -o kmc_api/mmer.o -In file included from kmc_core/first_dispatch.h:13, - from kmc_core/raduls_impl.h:24: -kmc_core/queues.h: In member function 'void CBinDesc::init_random()': -kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 593 | random_shuffle(random_bins.begin(), random_bins.end()); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, - from kmc_core/raduls_impl.h:19: + from /usr/include/c++/13/ext/algorithm:63, + from kmc_core/defs.h:112, + from kmc_core/kb_collector.h:14: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, - from kmc_core/kb_collector.h:15, - from kmc_core/splitter.h:16, - from kmc_core/splitter.cpp:11: + from kmc_core/kmc.h:15, + from kmc_core/kmc_runner.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); @@ -631,11 +656,22 @@ In file included from /usr/include/c++/13/algorithm:61, from /usr/include/c++/13/ext/algorithm:63, from kmc_core/defs.h:112, - from kmc_core/splitter.h:14: + from kmc_core/kmc.h:14: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o +In file included from kmc_core/first_dispatch.h:13, + from kmc_core/raduls_impl.h:24: +kmc_core/queues.h: In member function 'void CBinDesc::init_random()': +kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 593 | random_shuffle(random_bins.begin(), random_bins.end()); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/algorithm:61, + from kmc_core/raduls_impl.h:19: +/usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here + 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kff_writer.cpp -o kmc_core/kff_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o @@ -643,15 +679,15 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kmer_file_header.cpp -o kmc_tools/kmer_file_header.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o kmc_tools/kmer_file_header.cpp: In member function 'bool CKmerFileHeader::is_kff_file(std::string&)': kmc_tools/kmer_file_header.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fread(marker_start, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o kmc_tools/kmer_file_header.cpp:120:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fread(marker_end, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o @@ -752,23 +788,6 @@ kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from kmc_core/params.h:17: -kmc_core/s_mapper.h: In member function 'void CSignatureMapper::InitKMC(const std::string&)': -kmc_core/s_mapper.h:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 62 | fread(&kmc_version, sizeof(uint32), 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_core/s_mapper.h:72:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 72 | fread(&header_offset, sizeof(uint32_t), 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_core/s_mapper.h:76:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 76 | fread(&lut_prefix_len, sizeof(uint32_t), 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_core/s_mapper.h:77:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 77 | fread(&sig_len, sizeof(uint32_t), 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_core/s_mapper.h:106:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 106 | fread(raw, 1, 4, file); - | ~~~~~^~~~~~~~~~~~~~~~~ In file included from kmc_tools/kmc_tools.cpp:16: kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 8]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] @@ -990,6 +1009,23 @@ kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from kmc_core/params.h:17: +kmc_core/s_mapper.h: In member function 'void CSignatureMapper::InitKMC(const std::string&)': +kmc_core/s_mapper.h:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 62 | fread(&kmc_version, sizeof(uint32), 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_core/s_mapper.h:72:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 72 | fread(&header_offset, sizeof(uint32_t), 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_core/s_mapper.h:76:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 76 | fread(&lut_prefix_len, sizeof(uint32_t), 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_core/s_mapper.h:77:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 77 | fread(&sig_len, sizeof(uint32_t), 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_core/s_mapper.h:106:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 106 | fread(raw, 1, 4, file); + | ~~~~~^~~~~~~~~~~~~~~~~ mkdir -p bin g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc_tools kmc_tools/kmer_file_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_tools/kff_info_reader.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o -lz mkdir -p include @@ -1001,7 +1037,7 @@ make[2]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-aLlYcsbE + rm -fr -- /tmp/dh-xdg-rundir-yZ5MuqbC create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars @@ -1022,10 +1058,10 @@ install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/copyright debian/libkmc-dev/usr/share/doc/libkmc-dev/copyright dh_installchangelogs - install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev - install -p -m0644 debian/.debhelper/generated/libkmc-dev/dh_installchangelogs.dch.trimmed debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian install -m0755 -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/.debhelper/generated/kmc/dh_installchangelogs.dch.trimmed debian/kmc/usr/share/doc/kmc/changelog.Debian + install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev + install -p -m0644 debian/.debhelper/generated/libkmc-dev/dh_installchangelogs.dch.trimmed debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' @@ -1063,33 +1099,33 @@ install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 - mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 - mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 + mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 - mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 + mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 + mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_perl dh_link @@ -1097,25 +1133,25 @@ dh_compress cd debian/kmc cd debian/libkmc-dev - chmod a-x usr/share/doc/libkmc-dev/changelog.Debian chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 - gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian + chmod a-x usr/share/doc/libkmc-dev/changelog.Debian gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 + gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian cd '/build/reproducible-path/kmc-3.2.4+dfsg' cd '/build/reproducible-path/kmc-3.2.4+dfsg' dh_fixperms find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a install -m0755 -d debian/kmc/usr/lib/debug/.dwz/aarch64-linux-gnu @@ -1124,9 +1160,9 @@ chmod 0644 -- debian/kmc/usr/lib/debug/.dwz/aarch64-linux-gnu/kmc.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/aarch64-linux-gnu/libkmc.a - strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/aarch64-linux-gnu/libkmc_core.a install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/47 objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/47/cbb4dde572df174f31ef1e3de2c680436d8128.debug + strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/aarch64-linux-gnu/libkmc_core.a chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/47/cbb4dde572df174f31ef1e3de2c680436d8128.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/47/cbb4dde572df174f31ef1e3de2c680436d8128.debug debian/kmc/usr/bin/kmc @@ -1170,26 +1206,26 @@ install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -cdebian/control -Pdebian/.debhelper/kmc/dbgsym-root "-Vsimde:Built-Using=simde (= 0.8.0-1), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=debug symbols for kmc" "-DBuild-Ids=47cbb4dde572df174f31ef1e3de2c680436d8128 97336fed98a633d6403d44b3ac51bfa874f56f32 f567d8f95b0baddd0a3f52aa875eca607eaec46e" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined + chmod 0644 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -cdebian/control -Pdebian/kmc "-Vsimde:Built-Using=simde (= 0.8.0-1), " - chmod 0644 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/kmc/DEBIAN/control make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_md5sums install -m0755 -d debian/libkmc-dev/DEBIAN install -m0755 -d debian/kmc/DEBIAN - cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN cd debian/.debhelper/kmc/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/kmc .. dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root .. - dpkg-deb --root-owner-group --build debian/libkmc-dev .. dpkg-deb: building package 'kmc' in '../kmc_3.2.4+dfsg-1_arm64.deb'. + dpkg-deb --root-owner-group --build debian/libkmc-dev .. dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.4+dfsg-1_arm64.deb'. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_3.2.4+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../kmc_3.2.4+dfsg-1_arm64.buildinfo @@ -1199,12 +1235,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3749873/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3749873/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1236570 and its subdirectories -I: Current time: Mon Apr 29 20:38:23 -12 2024 -I: pbuilder-time-stamp: 1714466303 +I: removing directory /srv/workspace/pbuilder/3749873 and its subdirectories +I: Current time: Tue Jun 3 05:14:27 +14 2025 +I: pbuilder-time-stamp: 1748877267