Diff of the two buildlogs: -- --- b1/build.log 2024-10-30 21:02:26.100594850 +0000 +++ b2/build.log 2024-10-30 21:05:42.913590579 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Oct 30 08:59:30 -12 2024 -I: pbuilder-time-stamp: 1730321970 +I: Current time: Wed Dec 3 17:25:39 +14 2025 +I: pbuilder-time-stamp: 1764732339 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -42,52 +42,84 @@ dpkg-source: info: applying waiting_launcher.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2530634/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3772195/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 3 03:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3772195/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3772195/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='59151af4672b44168c6dc477d6ff3957' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2530634' - PS1='# ' - PS2='> ' + INVOCATION_ID=d49c313ff2aa44a09a024ec1b3a5d1c1 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3772195 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XuTj6odT/pbuilderrc_REjP --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XuTj6odT/b1 --logfile b1/build.log jalview_2.11.4.0+dfsg-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XuTj6odT/pbuilderrc_DhOO --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XuTj6odT/b2 --logfile b2/build.log jalview_2.11.4.0+dfsg-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2530634/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3772195/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -659,7 +691,7 @@ Get: 460 http://deb.debian.org/debian unstable/main arm64 libmockito-java all 3.3.0-2 [510 kB] Get: 461 http://deb.debian.org/debian unstable/main arm64 libvamsas-client-java all 0.2+dfsg-2 [584 kB] Get: 462 http://deb.debian.org/debian unstable/main arm64 varna all 3-93+ds-6 [803 kB] -Fetched 389 MB in 4s (109 MB/s) +Fetched 389 MB in 2s (227 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20067 files and directories currently installed.) @@ -2179,8 +2211,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Oct 30 21:00:32 UTC 2024. -Universal Time is now: Wed Oct 30 21:00:32 UTC 2024. +Local time is now: Wed Dec 3 03:26:42 UTC 2025. +Universal Time is now: Wed Dec 3 03:26:42 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2) ... @@ -2760,7 +2792,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/jalview-2.11.4.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../jalview_2.11.4.0+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/3772195/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3772195/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/jalview-2.11.4.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../jalview_2.11.4.0+dfsg-3_source.changes dpkg-buildpackage: info: source package jalview dpkg-buildpackage: info: source version 2.11.4.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -2817,18 +2853,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.953 secs. -The client will now receive all logging from the daemon (pid: 2548223). The daemon log file: /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/daemon/4.4.1/daemon-2548223.out.log +An attempt to start the daemon took 1.052 secs. +The client will now receive all logging from the daemon (pid: 3793508). The daemon log file: /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/daemon/4.4.1/daemon-3793508.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@51f38732 -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@51f38732 -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@61de1dab +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5ef877af +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5ef877af +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@eed8ff Starting Build Compiling initialization script '/build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@315801d2 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5e8eed03 Compiling initialization script '/build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/jalview-2.11.4.0+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/jalview-2.11.4.0+dfsg/settings.gradle' using BuildScriptTransformer. @@ -2855,73 +2891,73 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@56b2ed02 +Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6807b48b Tasks to be executed: [task ':copyHelp', task ':buildIndices', task ':copyResources', task ':copyChannelResources', task ':createBuildProperties', task ':buildResources', task ':copyDocs', task ':convertMdFiles', task ':releasesTemplates', task ':prepare', task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@61de1dab -Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@288b1b0f -Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@6c72c91e -:copyHelp (Thread[#59,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@eed8ff +Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5b8e5a5d +Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@3f773800 +:copyHelp (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :copyHelp -Putting task artifact state for task ':copyHelp' into context took 0.002 secs. -Up-to-date check for task ':copyHelp' took 0.216 secs. It is not up-to-date because: +Putting task artifact state for task ':copyHelp' into context took 0.001 secs. +Up-to-date check for task ':copyHelp' took 0.222 secs. It is not up-to-date because: No history is available. -:copyHelp (Thread[#59,Task worker for ':',5,main]) completed. Took 0.769 secs. -:buildIndices (Thread[#59,Task worker for ':',5,main]) started. +:copyHelp (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.843 secs. +:buildIndices (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :buildIndices Putting task artifact state for task ':buildIndices' into context took 0.0 secs. -Up-to-date check for task ':buildIndices' took 0.126 secs. It is not up-to-date because: +Up-to-date check for task ':buildIndices' took 0.11 secs. It is not up-to-date because: No history is available. Starting process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java''. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/resources/help_build/help Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /build/reproducible-path/jalview-2.11.4.0+dfsg/classes:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/varna.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/vamsas-client.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/slf4j-api.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/org.jfree.svg.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/min-jaba-client.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/miglayout.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/log4j-core.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/log4j-api.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/log4j-1.2.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jswingreader.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jsoup.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/json-simple.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/json.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jsearch-indexer.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/Jmol.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jh.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jetty9-server.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jetty9-util.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jersey1-core.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jersey1-client.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jaxrs-api.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jaxb-api.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/intervalstorej.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/httpmime.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/httpcore.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/httpclient.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/htsjdk.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/groovy-all.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/commons-math3.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/commons-discovery.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/biojava6-ontology.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/axis-jaxrpc.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/axis.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/apache-mime4j-core.jar com.sun.java.help.search.Indexer html Successfully started process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java'' -:buildIndices (Thread[#59,Task worker for ':',5,main]) completed. Took 1.328 secs. -:copyResources (Thread[#59,Task worker for ':',5,main]) started. +:buildIndices (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.975 secs. +:copyResources (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :copyResources Putting task artifact state for task ':copyResources' into context took 0.0 secs. -Up-to-date check for task ':copyResources' took 0.02 secs. It is not up-to-date because: +Up-to-date check for task ':copyResources' took 0.029 secs. It is not up-to-date because: No history is available. -:copyResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.058 secs. -:copyChannelResources (Thread[#59,Task worker for ':',5,main]) started. +:copyResources (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.085 secs. +:copyChannelResources (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :copyChannelResources Putting task artifact state for task ':copyChannelResources' into context took 0.0 secs. -Up-to-date check for task ':copyChannelResources' took 0.007 secs. It is not up-to-date because: +Up-to-date check for task ':copyChannelResources' took 0.01 secs. It is not up-to-date because: No history is available. -:copyChannelResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.031 secs. -:createBuildProperties (Thread[#59,Task worker for ':',5,main]) started. +:copyChannelResources (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.035 secs. +:createBuildProperties (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :createBuildProperties Putting task artifact state for task ':createBuildProperties' into context took 0.001 secs. Up-to-date check for task ':createBuildProperties' took 0.0 secs. It is not up-to-date because: Task has not declared any outputs. Starting process 'command 'sh''. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg Command: sh debian/write_build_properties_file.sh Successfully started process 'command 'sh'' -:createBuildProperties (Thread[#59,Task worker for ':',5,main]) completed. Took 0.184 secs. -:buildResources (Thread[#59,Task worker for ':',5,main]) started. +:createBuildProperties (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.237 secs. +:buildResources (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :buildResources Skipping task ':buildResources' as it has no actions. -:buildResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. -:copyDocs (Thread[#59,Task worker for ':',5,main]) started. +:buildResources (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:copyDocs (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :copyDocs Putting task artifact state for task ':copyDocs' into context took 0.0 secs. -Up-to-date check for task ':copyDocs' took 0.022 secs. It is not up-to-date because: +Up-to-date check for task ':copyDocs' took 0.023 secs. It is not up-to-date because: No history is available. -:copyDocs (Thread[#59,Task worker for ':',5,main]) completed. Took 0.108 secs. -:convertMdFiles (Thread[#59,Task worker for ':',5,main]) started. +:copyDocs (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.119 secs. +:convertMdFiles (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :convertMdFiles Skipping task ':convertMdFiles' as it has no actions. -:convertMdFiles (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. -:releasesTemplates (Thread[#59,Task worker for ':',5,main]) started. +:convertMdFiles (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:releasesTemplates (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :releasesTemplates Skipping task ':releasesTemplates' as it has no actions. -:releasesTemplates (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. -:prepare (Thread[#59,Task worker for ':',5,main]) started. +:releasesTemplates (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:prepare (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :prepare Skipping task ':prepare' as it has no actions. -:prepare (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. -:compileJava (Thread[#59,Task worker for ':',5,main]) started. +:prepare (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:compileJava (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.4.0+dfsg/src/main/java', not found file or directory '/build/reproducible-path/jalview-2.11.4.0+dfsg/src/main/java', not found -Up-to-date check for task ':compileJava' took 1.265 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 1.277 secs. It is not up-to-date because: No history is available. Setting target compatibility to 11 All input files are considered out-of-date for incremental task ':compileJava'. @@ -2974,30 +3010,30 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 14 warnings -:compileJava (Thread[#59,Task worker for ':',5,main]) completed. Took 14.371 secs. -:processResources (Thread[#59,Task worker for ':',5,main]) started. +:compileJava (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 14.309 secs. +:processResources (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.062 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.04 secs. It is not up-to-date because: No history is available. -:processResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.234 secs. -:classes (Thread[#59,Task worker for ':',5,main]) started. +:processResources (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.199 secs. +:classes (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[#59,Task worker for ':',5,main]) started. +:classes (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/jalview-2.11.4.0+dfsg/build/debian/jalview.pom -:debianMavenPom (Thread[#59,Task worker for ':',5,main]) completed. Took 0.111 secs. -:jar (Thread[#59,Task worker for ':',5,main]) started. +:debianMavenPom (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.063 secs. +:jar (Thread[#62,Task worker for ':' Thread 2,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.077 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.071 secs. It is not up-to-date because: No history is available. -:jar (Thread[#59,Task worker for ':',5,main]) completed. Took 0.825 secs. +:jar (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.862 secs. BUILD SUCCESSFUL in 25s 10 actionable tasks: 10 executed @@ -3021,17 +3057,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.013 secs. -The client will now receive all logging from the daemon (pid: 2549745). The daemon log file: /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/daemon/4.4.1/daemon-2549745.out.log +An attempt to start the daemon took 1.049 secs. +The client will now receive all logging from the daemon (pid: 3797947). The daemon log file: /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/daemon/4.4.1/daemon-3797947.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b917390 -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b917390 -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@34557e60 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@34597425 +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@34597425 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@79e116a8 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@733aaeda +Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@21ea061c Settings evaluated using settings file '/build/reproducible-path/jalview-2.11.4.0+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/jalview-2.11.4.0+dfsg/build.gradle'. Included projects: [root project 'jalview'] @@ -3051,77 +3087,77 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@34246dfd +Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@7bd2786d Tasks to be executed: [task ':copyHelp', task ':buildIndices', task ':copyResources', task ':copyChannelResources', task ':createBuildProperties', task ':buildResources', task ':copyDocs', task ':convertMdFiles', task ':releasesTemplates', task ':prepare', task ':compileJava', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':testTask0', task ':testTask1', task ':testTask2', task ':testTask3', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@34557e60 -Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@58ae5d1 -Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@563dee9b -:copyHelp (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@79e116a8 +Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@3f6f2b41 +Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.4.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@18a482e7 +:copyHelp (Thread[#61,Task worker for ':',5,main]) started. :copyHelp Putting task artifact state for task ':copyHelp' into context took 0.002 secs. -Skipping task ':copyHelp' as it is up-to-date (took 0.153 secs). +Skipping task ':copyHelp' as it is up-to-date (took 0.188 secs). :copyHelp UP-TO-DATE -:copyHelp (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.17 secs. -:buildIndices (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:copyHelp (Thread[#61,Task worker for ':',5,main]) completed. Took 0.207 secs. +:buildIndices (Thread[#61,Task worker for ':',5,main]) started. :buildIndices Putting task artifact state for task ':buildIndices' into context took 0.0 secs. -Up-to-date check for task ':buildIndices' took 0.301 secs. It is not up-to-date because: +Up-to-date check for task ':buildIndices' took 0.511 secs. It is not up-to-date because: Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/Jmol.jar has been removed. Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.0+dfsg/classes/com/github/reinert/jjschema/Attributes.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/apache-mime4j-core.jar has been removed. Starting process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java''. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/resources/help_build/help Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /build/reproducible-path/jalview-2.11.4.0+dfsg/classes:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/testng.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/mockito-core.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/junit4.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jcommander.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jaxb-impl.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/guava.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/varna.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/vamsas-client.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/slf4j-api.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/org.jfree.svg.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/min-jaba-client.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/miglayout.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/log4j-core.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/log4j-api.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/log4j-1.2.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jswingreader.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jsoup.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/json-simple.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/json.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jsearch-indexer.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/Jmol.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jh.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jetty9-server.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jetty9-util.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jersey1-core.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jersey1-client.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jaxrs-api.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/jaxb-api.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/intervalstorej.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/httpmime.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/httpcore.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/httpclient.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/htsjdk.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/groovy-all.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/commons-math3.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/commons-discovery.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/biojava6-ontology.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/axis-jaxrpc.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/axis.jar:/build/reproducible-path/jalview-2.11.4.0+dfsg/cpJars/apache-mime4j-core.jar com.sun.java.help.search.Indexer html Successfully started process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java'' -:buildIndices (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 1.147 secs. -:copyResources (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:buildIndices (Thread[#61,Task worker for ':',5,main]) completed. Took 1.37 secs. +:copyResources (Thread[#61,Task worker for ':',5,main]) started. :copyResources Putting task artifact state for task ':copyResources' into context took 0.0 secs. -Skipping task ':copyResources' as it is up-to-date (took 0.026 secs). +Skipping task ':copyResources' as it is up-to-date (took 0.025 secs). :copyResources UP-TO-DATE -:copyResources (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.028 secs. -:copyChannelResources (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:copyResources (Thread[#61,Task worker for ':',5,main]) completed. Took 0.027 secs. +:copyChannelResources (Thread[#61,Task worker for ':',5,main]) started. :copyChannelResources Putting task artifact state for task ':copyChannelResources' into context took 0.0 secs. -Skipping task ':copyChannelResources' as it is up-to-date (took 0.006 secs). +Skipping task ':copyChannelResources' as it is up-to-date (took 0.005 secs). :copyChannelResources UP-TO-DATE -:copyChannelResources (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.008 secs. -:createBuildProperties (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:copyChannelResources (Thread[#61,Task worker for ':',5,main]) completed. Took 0.007 secs. +:createBuildProperties (Thread[#61,Task worker for ':',5,main]) started. :createBuildProperties Putting task artifact state for task ':createBuildProperties' into context took 0.001 secs. Up-to-date check for task ':createBuildProperties' took 0.0 secs. It is not up-to-date because: Task has not declared any outputs. Starting process 'command 'sh''. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg Command: sh debian/write_build_properties_file.sh Successfully started process 'command 'sh'' -:createBuildProperties (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.27 secs. -:buildResources (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:createBuildProperties (Thread[#61,Task worker for ':',5,main]) completed. Took 0.222 secs. +:buildResources (Thread[#61,Task worker for ':',5,main]) started. :buildResources Skipping task ':buildResources' as it has no actions. -:buildResources (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. -:copyDocs (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:buildResources (Thread[#61,Task worker for ':',5,main]) completed. Took 0.0 secs. +:copyDocs (Thread[#61,Task worker for ':',5,main]) started. :copyDocs Putting task artifact state for task ':copyDocs' into context took 0.0 secs. Skipping task ':copyDocs' as it is up-to-date (took 0.019 secs). :copyDocs UP-TO-DATE -:copyDocs (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.023 secs. -:convertMdFiles (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:copyDocs (Thread[#61,Task worker for ':',5,main]) completed. Took 0.022 secs. +:convertMdFiles (Thread[#61,Task worker for ':',5,main]) started. :convertMdFiles Skipping task ':convertMdFiles' as it has no actions. :convertMdFiles UP-TO-DATE -:convertMdFiles (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. -:releasesTemplates (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:convertMdFiles (Thread[#61,Task worker for ':',5,main]) completed. Took 0.001 secs. +:releasesTemplates (Thread[#61,Task worker for ':',5,main]) started. :releasesTemplates Skipping task ':releasesTemplates' as it has no actions. :releasesTemplates UP-TO-DATE -:releasesTemplates (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. -:prepare (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:releasesTemplates (Thread[#61,Task worker for ':',5,main]) completed. Took 0.001 secs. +:prepare (Thread[#61,Task worker for ':',5,main]) started. :prepare Skipping task ':prepare' as it has no actions. -:prepare (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. -:compileJava (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:prepare (Thread[#61,Task worker for ':',5,main]) completed. Took 0.001 secs. +:compileJava (Thread[#61,Task worker for ':',5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.4.0+dfsg/src/main/java', not found file or directory '/build/reproducible-path/jalview-2.11.4.0+dfsg/src/main/java', not found -Up-to-date check for task ':compileJava' took 1.814 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 1.756 secs. It is not up-to-date because: Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.0+dfsg/classes/com/github/reinert/jjschema/Attributes.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.0+dfsg/classes/com/stevesoft/pat/AmpersandRule.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.4.0+dfsg/classes/com/stevesoft/pat/Any.class has been added. @@ -3175,13 +3211,13 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 14 warnings -:compileJava (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 14.46 secs. -:compileTestJava (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:compileJava (Thread[#61,Task worker for ':',5,main]) completed. Took 14.73 secs. +:compileTestJava (Thread[#61,Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.4.0+dfsg/src/test/java', not found file or directory '/build/reproducible-path/jalview-2.11.4.0+dfsg/src/test/java', not found -Up-to-date check for task ':compileTestJava' took 0.106 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 0.154 secs. It is not up-to-date because: No history is available. Setting target compatibility to 11 All input files are considered out-of-date for incremental task ':compileTestJava'. @@ -3191,50 +3227,50 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileTestJava (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 3.479 secs. -:processTestResources (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:compileTestJava (Thread[#61,Task worker for ':',5,main]) completed. Took 3.421 secs. +:processTestResources (Thread[#61,Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -Up-to-date check for task ':processTestResources' took 0.048 secs. It is not up-to-date because: +Up-to-date check for task ':processTestResources' took 0.084 secs. It is not up-to-date because: No history is available. -:processTestResources (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.253 secs. -:testClasses (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:processTestResources (Thread[#61,Task worker for ':',5,main]) completed. Took 0.291 secs. +:testClasses (Thread[#61,Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. -:testTask0 (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:testClasses (Thread[#61,Task worker for ':',5,main]) completed. Took 0.0 secs. +:testTask0 (Thread[#61,Task worker for ':',5,main]) started. :testTask0 Putting task artifact state for task ':testTask0' into context took 0.0 secs. -Up-to-date check for task ':testTask0' took 0.047 secs. It is not up-to-date because: +Up-to-date check for task ':testTask0' took 0.045 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath7266500289037605662txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath3763875377372911784txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. -Finished generating test XML results (0.08 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/test-results/testTask0 +Finished generating test XML results (0.069 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/test-results/testTask0 Generating HTML test report... -Finished generating test html results (0.102 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask0 -:testTask0 (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 5.241 secs. -:testTask1 (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +Finished generating test html results (0.075 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask0 +:testTask0 (Thread[#61,Task worker for ':',5,main]) completed. Took 5.261 secs. +:testTask1 (Thread[#61,Task worker for ':',5,main]) started. :testTask1 Putting task artifact state for task ':testTask1' into context took 0.0 secs. -Up-to-date check for task ':testTask1' took 0.018 secs. It is not up-to-date because: +Up-to-date check for task ':testTask1' took 0.015 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath12471770686408180332txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath2262914257103079734txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 2' Gradle Test Executor 2 started executing tests. Gradle Test Executor 2 finished executing tests. -Finished generating test XML results (0.003 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/test-results/testTask1 +Finished generating test XML results (0.002 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/test-results/testTask1 Generating HTML test report... Finished generating test html results (0.006 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask1 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask1/index.html -:testTask1 (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 1.977 secs. -:testTask2 (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:testTask1 (Thread[#61,Task worker for ':',5,main]) completed. Took 1.983 secs. +:testTask2 (Thread[#61,Task worker for ':',5,main]) started. :testTask2 Putting task artifact state for task ':testTask2' into context took 0.0 secs. Up-to-date check for task ':testTask2' took 0.021 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath10268995355697018051txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' +Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath18297996981670978923txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' Successfully started process 'Gradle Test Executor 3' Gradle Test Executor 3 started executing tests. Gradle Test Executor 3 finished executing tests. @@ -3242,44 +3278,44 @@ Generating HTML test report... Finished generating test html results (0.004 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask2 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask2/index.html -:testTask2 (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 1.93 secs. -:testTask3 (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:testTask2 (Thread[#61,Task worker for ':',5,main]) completed. Took 1.831 secs. +:testTask3 (Thread[#61,Task worker for ':',5,main]) started. :testTask3 Putting task artifact state for task ':testTask3' into context took 0.0 secs. -Up-to-date check for task ':testTask3' took 0.019 secs. It is not up-to-date because: +Up-to-date check for task ':testTask3' took 0.02 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath6187729019058009451txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' +Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/jalview-2.11.4.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath5365026028642828910txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' Successfully started process 'Gradle Test Executor 4' Gradle Test Executor 4 started executing tests. Gradle Test Executor 4 finished executing tests. Finished generating test XML results (0.002 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/test-results/testTask3 Generating HTML test report... -Finished generating test html results (0.004 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask3 +Finished generating test html results (0.003 secs) into: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask3 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask3/index.html -:testTask3 (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 1.906 secs. -:test (Thread[#61,Task worker for ':' Thread 3,5,main]) started. +:testTask3 (Thread[#61,Task worker for ':',5,main]) completed. Took 1.792 secs. +:test (Thread[#61,Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Skipping task ':test' as it has no source files and no previous output files. :test NO-SOURCE -:test (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.005 secs. +:test (Thread[#61,Task worker for ':',5,main]) completed. Took 0.005 secs. BUILD SUCCESSFUL in 37s 13 actionable tasks: 9 executed, 4 up-to-date ┌─────────────────────────────────────────────────────────────────────────────────────────────────────┐ -│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 3.317 seconds│ +│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 3.231 seconds│ │Report file: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask0/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.864 seconds │ +│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.887 seconds │ │Report file: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask1/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.820 seconds │ +│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.721 seconds │ │Report file: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask2/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.795 seconds │ +│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.684 seconds │ │Report file: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask3/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 8.796 seconds │ +│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 8.523 seconds │ └─────────────────────────────────────────────────────────────────────────────────────────────────────┘ FAILURE: Build failed with an exception. @@ -3383,19 +3419,19 @@ BUILD FAILED in 37s 13 actionable tasks: 9 executed, 4 up-to-date ┌─────────────────────────────────────────────────────────────────────────────────────────────────────┐ -│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 3.317 seconds│ +│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 3.231 seconds│ │Report file: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask0/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.864 seconds │ +│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.887 seconds │ │Report file: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask1/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.820 seconds │ +│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.721 seconds │ │Report file: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask2/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.795 seconds │ +│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.684 seconds │ │Report file: /build/reproducible-path/jalview-2.11.4.0+dfsg/build/reports/tests/testTask3/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 8.796 seconds │ +│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 8.523 seconds │ └─────────────────────────────────────────────────────────────────────────────────────────────────────┘ FAILURE: Build failed with an exception. @@ -3545,12 +3581,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3772195/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3772195/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2530634 and its subdirectories -I: Current time: Wed Oct 30 09:02:24 -12 2024 -I: pbuilder-time-stamp: 1730322144 +I: removing directory /srv/workspace/pbuilder/3772195 and its subdirectories +I: Current time: Wed Dec 3 17:28:41 +14 2025 +I: pbuilder-time-stamp: 1764732521