Diff of the two buildlogs: -- --- b1/build.log 2024-12-04 01:40:00.322071986 +0000 +++ b2/build.log 2024-12-04 01:45:04.912308862 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Dec 3 13:35:26 -12 2024 -I: pbuilder-time-stamp: 1733276126 +I: Current time: Tue Jan 6 22:03:03 +14 2026 +I: pbuilder-time-stamp: 1767686583 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying gcc-14-32-bit.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4103563/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3215108/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 6 08:03 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3215108/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3215108/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='3dee8b990cb749ae84d2f371e906d0a1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4103563' - PS1='# ' - PS2='> ' + INVOCATION_ID=61d0867f9869461fad33bbc162195393 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3215108 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.e2sBWUWj/pbuilderrc_1JSJ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.e2sBWUWj/b1 --logfile b1/build.log gentle_1.9.5~alpha2+dfsg1-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.e2sBWUWj/pbuilderrc_zQNE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.e2sBWUWj/b2 --logfile b2/build.log gentle_1.9.5~alpha2+dfsg1-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4103563/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3215108/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -325,7 +357,7 @@ Get: 198 http://deb.debian.org/debian unstable/main arm64 libwxgtk3.2-dev arm64 3.2.6+dfsg-2 [80.3 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] -Fetched 106 MB in 1s (150 MB/s) +Fetched 106 MB in 2s (70.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20086 files and directories currently installed.) @@ -1162,7 +1194,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gentle_1.9.5~alpha2+dfsg1-2_source.changes +I: user script /srv/workspace/pbuilder/3215108/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3215108/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gentle_1.9.5~alpha2+dfsg1-2_source.changes dpkg-buildpackage: info: source package gentle dpkg-buildpackage: info: source version 1.9.5~alpha2+dfsg1-2 dpkg-buildpackage: info: source distribution unstable @@ -1434,7 +1470,7 @@ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -c -o ipc/GENtle-gp_out.o `test -f 'ipc/gp_out.cpp' || echo './'`ipc/gp_out.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -c -o ipc/GENtle-ipc.o `test -f 'ipc/ipc.cpp' || echo './'`ipc/ipc.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -c -o ipc/GENtle-pars.o `test -f 'ipc/pars.cpp' || echo './'`ipc/pars.cpp -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -o GENtle GENtle-ABItype.o GENtle-ABIviewer.o GENtle-Alignment.o GENtle-AlignmentAppearanceDialog.o GENtle-AminoAcids.o GENtle-AutoAnnotate.o GENtle-CGview.o GENtle-ChildBase.o GENtle-CloneManager.o GENtle-CloningAssistant.o GENtle-CoolCanvas.o GENtle-ExternalBLAST.o GENtle-ExternalInterface.o GENtle-ExternalNCBI.o GENtle-FindSequenceDialog.o GENtle-GenBank.o GENtle-ManageDatabase.o GENtle-MiscDialogs.o GENtle-MyChild.o GENtle-MyFrame.o GENtle-OnlineTools.o GENtle-PCR_Troubleshoot.o GENtle-PlasmidCanvas.o GENtle-PlasmidCanvasCircular.o GENtle-PlasmidCanvasHandlers.o GENtle-PlasmidCanvasLinear.o GENtle-PrimerDesign.o GENtle-ProgramOptionsDialog.o GENtle-RestrictionEnzymes.o GENtle-SCFtype.o GENtle-SendHTTP.o GENtle-SequenceCanvas.o GENtle-SequenceTypeAA.o GENtle-SequenceTypeAAstructure.o GENtle-SequenceTypeABI.o GENtle-SequenceTypeAlign.o GENtle-SequenceTypeDNA.o GENtle-SequenceTypeFeature.o GENtle-SequenceTypePlot.o GENtle-SequenceTypeRestriction.o GENtle-SequenceTypes.o GENtle-TAlignmentDialog.o GENtle-TCalculator.o GENtle-TClone.o GENtle-TDotPlot.o GENtle-TEliteLaChromLogDialog.o GENtle-TGraph.o GENtle-TGraphDisplay.o GENtle-TGraphScale.o GENtle-TIMGreader.o GENtle-TImageDisplay.o GENtle-TItemEditDialog.o GENtle-TLigationDialog.o GENtle-TMainTree.o GENtle-TPDB.o GENtle-TPhylip.o GENtle-TPhyloTree.o GENtle-TPrimer.o GENtle-TPrimerDialog.o GENtle-TProteolysis.o GENtle-TRestrictionEditor.o GENtle-TRestrictionIdentifier.o GENtle-TSequencingAssistantDialog.o GENtle-TSilmutDialog.o GENtle-TStorage.o GENtle-TStoreAllDialog.o GENtle-TUReadSeq.o GENtle-TUndo.o GENtle-TVector.o GENtle-TVectorEditor.o GENtle-TVectorEditorEnzymes.o GENtle-TVectorEditorItems.o GENtle-TVectorTree.o GENtle-TVirtualGel.o GENtle-TXMLfile.o GENtle-TextImportDialog.o ipc/GENtle-element.o ipc/GENtle-gp_out.o ipc/GENtle-ipc.o ipc/GENtle-pars.o GENtle-ncoils.o GENtle-todo.o GENtle-ureadseq.o GENtle-util.o GENtle-main.o -L/usr/lib/aarch64-linux-gnu -pthread -lwx_gtk3u_xrc-3.2 -lwx_gtk3u_html-3.2 -lwx_gtk3u_qa-3.2 -lwx_gtk3u_core-3.2 -lwx_baseu_xml-3.2 -lwx_baseu_net-3.2 -lwx_baseu-3.2 -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -L/usr/lib -lsqlite3 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -o GENtle GENtle-ABItype.o GENtle-ABIviewer.o GENtle-Alignment.o GENtle-AlignmentAppearanceDialog.o GENtle-AminoAcids.o GENtle-AutoAnnotate.o GENtle-CGview.o GENtle-ChildBase.o GENtle-CloneManager.o GENtle-CloningAssistant.o GENtle-CoolCanvas.o GENtle-ExternalBLAST.o GENtle-ExternalInterface.o GENtle-ExternalNCBI.o GENtle-FindSequenceDialog.o GENtle-GenBank.o GENtle-ManageDatabase.o GENtle-MiscDialogs.o GENtle-MyChild.o GENtle-MyFrame.o GENtle-OnlineTools.o GENtle-PCR_Troubleshoot.o GENtle-PlasmidCanvas.o GENtle-PlasmidCanvasCircular.o GENtle-PlasmidCanvasHandlers.o GENtle-PlasmidCanvasLinear.o GENtle-PrimerDesign.o GENtle-ProgramOptionsDialog.o GENtle-RestrictionEnzymes.o GENtle-SCFtype.o GENtle-SendHTTP.o GENtle-SequenceCanvas.o GENtle-SequenceTypeAA.o GENtle-SequenceTypeAAstructure.o GENtle-SequenceTypeABI.o GENtle-SequenceTypeAlign.o GENtle-SequenceTypeDNA.o GENtle-SequenceTypeFeature.o GENtle-SequenceTypePlot.o GENtle-SequenceTypeRestriction.o GENtle-SequenceTypes.o GENtle-TAlignmentDialog.o GENtle-TCalculator.o GENtle-TClone.o GENtle-TDotPlot.o GENtle-TEliteLaChromLogDialog.o GENtle-TGraph.o GENtle-TGraphDisplay.o GENtle-TGraphScale.o GENtle-TIMGreader.o GENtle-TImageDisplay.o GENtle-TItemEditDialog.o GENtle-TLigationDialog.o GENtle-TMainTree.o GENtle-TPDB.o GENtle-TPhylip.o GENtle-TPhyloTree.o GENtle-TPrimer.o GENtle-TPrimerDialog.o GENtle-TProteolysis.o GENtle-TRestrictionEditor.o GENtle-TRestrictionIdentifier.o GENtle-TSequencingAssistantDialog.o GENtle-TSilmutDialog.o GENtle-TStorage.o GENtle-TStoreAllDialog.o GENtle-TUReadSeq.o GENtle-TUndo.o GENtle-TVector.o GENtle-TVectorEditor.o GENtle-TVectorEditorEnzymes.o GENtle-TVectorEditorItems.o GENtle-TVectorTree.o GENtle-TVirtualGel.o GENtle-TXMLfile.o GENtle-TextImportDialog.o ipc/GENtle-element.o ipc/GENtle-gp_out.o ipc/GENtle-ipc.o ipc/GENtle-pars.o GENtle-ncoils.o GENtle-todo.o GENtle-ureadseq.o GENtle-util.o GENtle-main.o -L/usr/lib/aarch64-linux-gnu -pthread -lwx_gtk3u_xrc-3.2 -lwx_gtk3u_html-3.2 -lwx_gtk3u_qa-3.2 -lwx_gtk3u_core-3.2 -lwx_baseu_xml-3.2 -lwx_baseu_net-3.2 -lwx_baseu-3.2 -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -L/usr/lib -lsqlite3 libtool: link: g++ -g -O2 "-ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=." -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -g -O2 "-ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=." -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -o GENtle GENtle-ABItype.o GENtle-ABIviewer.o GENtle-Alignment.o GENtle-AlignmentAppearanceDialog.o GENtle-AminoAcids.o GENtle-AutoAnnotate.o GENtle-CGview.o GENtle-ChildBase.o GENtle-CloneManager.o GENtle-CloningAssistant.o GENtle-CoolCanvas.o GENtle-ExternalBLAST.o GENtle-ExternalInterface.o GENtle-ExternalNCBI.o GENtle-FindSequenceDialog.o GENtle-GenBank.o GENtle-ManageDatabase.o GENtle-MiscDialogs.o GENtle-MyChild.o GENtle-MyFrame.o GENtle-OnlineTools.o GENtle-PCR_Troubleshoot.o GENtle-PlasmidCanvas.o GENtle-PlasmidCanvasCircular.o GENtle-PlasmidCanvasHandlers.o GENtle-PlasmidCanvasLinear.o GENtle-PrimerDesign.o GENtle-ProgramOptionsDialog.o GENtle-RestrictionEnzymes.o GENtle-SCFtype.o GENtle-SendHTTP.o GENtle-SequenceCanvas.o GENtle-SequenceTypeAA.o GENtle-SequenceTypeAAstructure.o GENtle-SequenceTypeABI.o GENtle-SequenceTypeAlign.o GENtle-SequenceTypeDNA.o GENtle-SequenceTypeFeature.o GENtle-SequenceTypePlot.o GENtle-SequenceTypeRestriction.o GENtle-SequenceTypes.o GENtle-TAlignmentDialog.o GENtle-TCalculator.o GENtle-TClone.o GENtle-TDotPlot.o GENtle-TEliteLaChromLogDialog.o GENtle-TGraph.o GENtle-TGraphDisplay.o GENtle-TGraphScale.o GENtle-TIMGreader.o GENtle-TImageDisplay.o GENtle-TItemEditDialog.o GENtle-TLigationDialog.o GENtle-TMainTree.o GENtle-TPDB.o GENtle-TPhylip.o GENtle-TPhyloTree.o GENtle-TPrimer.o GENtle-TPrimerDialog.o GENtle-TProteolysis.o GENtle-TRestrictionEditor.o GENtle-TRestrictionIdentifier.o GENtle-TSequencingAssistantDialog.o GENtle-TSilmutDialog.o GENtle-TStorage.o GENtle-TStoreAllDialog.o GENtle-TUReadSeq.o GENtle-TUndo.o GENtle-TVector.o GENtle-TVectorEditor.o GENtle-TVectorEditorEnzymes.o GENtle-TVectorEditorItems.o GENtle-TVectorTree.o GENtle-TVirtualGel.o GENtle-TXMLfile.o GENtle-TextImportDialog.o ipc/GENtle-element.o ipc/GENtle-gp_out.o ipc/GENtle-ipc.o ipc/GENtle-pars.o GENtle-ncoils.o GENtle-todo.o GENtle-ureadseq.o GENtle-util.o GENtle-main.o -Wl,-z -Wl,relro -Wl,-z -Wl,now -L/usr/lib/aarch64-linux-gnu/ -L/usr/lib/aarch64-linux-gnu -lwx_gtk3u_xrc-3.2 -lwx_gtk3u_html-3.2 -lwx_gtk3u_qa-3.2 -lwx_gtk3u_core-3.2 -lwx_baseu_xml-3.2 -lwx_baseu_net-3.2 -lwx_baseu-3.2 -lmariadb -ltinyxml -L/usr/lib -lsqlite3 -pthread make[3]: Leaving directory '/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/src' Making all in tests @@ -1463,7 +1499,7 @@ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DGTEST_HAS_PTHREAD=1 -I../src -DTESTING -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -DGTEST_HAS_PTHREAD=1 -DTESTING -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -c -o my_tests-main_test.o `test -f 'main_test.cpp' || echo './'`main_test.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DGTEST_HAS_PTHREAD=1 -I../src -DTESTING -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -DGTEST_HAS_PTHREAD=1 -DTESTING -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -c -o my_tests-TXMLfile_test.o `test -f 'TXMLfile_test.cpp' || echo './'`TXMLfile_test.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DGTEST_HAS_PTHREAD=1 -I../src -DTESTING -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -DGTEST_HAS_PTHREAD=1 -DTESTING -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -c -o ../src/my_tests-main.o `test -f '../src/main.cpp' || echo './'`../src/main.cpp -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -DGTEST_HAS_PTHREAD=1 -DTESTING -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -pthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -o my_tests ../src/my_tests-main.o my_tests-main_test.o my_tests-TXMLfile_test.o ../src/GENtle-MyFrame.o ../src/GENtle-TVectorEditorItems.o ../src/GENtle-ProgramOptionsDialog.o ../src/GENtle-TXMLfile.o ../src/GENtle-TGraphDisplay.o ../src/GENtle-AutoAnnotate.o ../src/GENtle-TPhylip.o ../src/GENtle-RestrictionEnzymes.o ../src/GENtle-SequenceTypeRestriction.o ../src/GENtle-TProteolysis.o ../src/GENtle-CloningAssistant.o ../src/GENtle-SequenceTypeAA.o ../src/GENtle-ABIviewer.o ../src/GENtle-AlignmentAppearanceDialog.o ../src/GENtle-TMainTree.o ../src/GENtle-SequenceTypes.o ../src/GENtle-FindSequenceDialog.o ../src/GENtle-TDotPlot.o ../src/GENtle-TStorage.o ../src/GENtle-TIMGreader.o ../src/GENtle-Alignment.o ../src/GENtle-TVectorEditorEnzymes.o ../src/GENtle-SendHTTP.o ../src/GENtle-TSequencingAssistantDialog.o ../src/GENtle-TRestrictionIdentifier.o ../src/GENtle-PlasmidCanvasLinear.o ../src/GENtle-todo.o ../src/GENtle-TLigationDialog.o ../src/GENtle-TVectorEditor.o ../src/GENtle-TGraph.o ../src/GENtle-TImageDisplay.o ../src/GENtle-PlasmidCanvas.o ../src/GENtle-TClone.o ../src/GENtle-TUndo.o ../src/GENtle-util.o ../src/GENtle-ABItype.o ../src/GENtle-ncoils.o ../src/GENtle-CGview.o ../src/GENtle-ExternalInterface.o ../src/GENtle-TUReadSeq.o ../src/GENtle-TRestrictionEditor.o ../src/GENtle-PrimerDesign.o ../src/GENtle-OnlineTools.o ../src/GENtle-MiscDialogs.o ../src/GENtle-SequenceTypeABI.o ../src/GENtle-TStoreAllDialog.o ../src/GENtle-AminoAcids.o ../src/GENtle-CoolCanvas.o ../src/GENtle-TVector.o ../src/GENtle-TEliteLaChromLogDialog.o ../src/GENtle-SequenceTypeFeature.o ../src/GENtle-ExternalBLAST.o ../src/GENtle-SequenceCanvas.o ../src/GENtle-SequenceTypePlot.o ../src/GENtle-ExternalNCBI.o ../src/GENtle-TPhyloTree.o ../src/GENtle-GenBank.o ../src/GENtle-SequenceTypeDNA.o ../src/GENtle-TGraphScale.o ../src/GENtle-PlasmidCanvasHandlers.o ../src/GENtle-MyChild.o ../src/GENtle-ureadseq.o ../src/ipc/GENtle-element.o ../src/ipc/GENtle-pars.o ../src/ipc/GENtle-gp_out.o ../src/ipc/GENtle-ipc.o ../src/GENtle-CloneManager.o ../src/GENtle-SequenceTypeAlign.o ../src/GENtle-TPDB.o ../src/GENtle-TPrimerDialog.o ../src/GENtle-SCFtype.o ../src/GENtle-TCalculator.o ../src/GENtle-TVectorTree.o ../src/GENtle-TItemEditDialog.o ../src/GENtle-TAlignmentDialog.o ../src/GENtle-TextImportDialog.o ../src/GENtle-TPrimer.o ../src/GENtle-ChildBase.o ../src/GENtle-PCR_Troubleshoot.o ../src/GENtle-ManageDatabase.o ../src/GENtle-SequenceTypeAAstructure.o ../src/GENtle-PlasmidCanvasCircular.o ../src/GENtle-TVirtualGel.o ../src/GENtle-TSilmutDialog.o -L/usr/lib/aarch64-linux-gnu -pthread -lwx_gtk3u_xrc-3.2 -lwx_gtk3u_html-3.2 -lwx_gtk3u_qa-3.2 -lwx_gtk3u_core-3.2 -lwx_baseu_xml-3.2 -lwx_baseu_net-3.2 -lwx_baseu-3.2 -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -L/usr/lib -lsqlite3 -lgtest -lgtest_main +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -DGTEST_HAS_PTHREAD=1 -DTESTING -g -O2 -ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -pthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -o my_tests ../src/my_tests-main.o my_tests-main_test.o my_tests-TXMLfile_test.o ../src/GENtle-MyFrame.o ../src/GENtle-TVectorEditorItems.o ../src/GENtle-ProgramOptionsDialog.o ../src/GENtle-TXMLfile.o ../src/GENtle-TGraphDisplay.o ../src/GENtle-AutoAnnotate.o ../src/GENtle-TPhylip.o ../src/GENtle-RestrictionEnzymes.o ../src/GENtle-SequenceTypeRestriction.o ../src/GENtle-TProteolysis.o ../src/GENtle-CloningAssistant.o ../src/GENtle-SequenceTypeAA.o ../src/GENtle-ABIviewer.o ../src/GENtle-AlignmentAppearanceDialog.o ../src/GENtle-TMainTree.o ../src/GENtle-SequenceTypes.o ../src/GENtle-FindSequenceDialog.o ../src/GENtle-TDotPlot.o ../src/GENtle-TStorage.o ../src/GENtle-TIMGreader.o ../src/GENtle-Alignment.o ../src/GENtle-TVectorEditorEnzymes.o ../src/GENtle-SendHTTP.o ../src/GENtle-TSequencingAssistantDialog.o ../src/GENtle-TRestrictionIdentifier.o ../src/GENtle-PlasmidCanvasLinear.o ../src/GENtle-todo.o ../src/GENtle-TLigationDialog.o ../src/GENtle-TVectorEditor.o ../src/GENtle-TGraph.o ../src/GENtle-TImageDisplay.o ../src/GENtle-PlasmidCanvas.o ../src/GENtle-TClone.o ../src/GENtle-TUndo.o ../src/GENtle-util.o ../src/GENtle-ABItype.o ../src/GENtle-ncoils.o ../src/GENtle-CGview.o ../src/GENtle-ExternalInterface.o ../src/GENtle-TUReadSeq.o ../src/GENtle-TRestrictionEditor.o ../src/GENtle-PrimerDesign.o ../src/GENtle-OnlineTools.o ../src/GENtle-MiscDialogs.o ../src/GENtle-SequenceTypeABI.o ../src/GENtle-TStoreAllDialog.o ../src/GENtle-AminoAcids.o ../src/GENtle-CoolCanvas.o ../src/GENtle-TVector.o ../src/GENtle-TEliteLaChromLogDialog.o ../src/GENtle-SequenceTypeFeature.o ../src/GENtle-ExternalBLAST.o ../src/GENtle-SequenceCanvas.o ../src/GENtle-SequenceTypePlot.o ../src/GENtle-ExternalNCBI.o ../src/GENtle-TPhyloTree.o ../src/GENtle-GenBank.o ../src/GENtle-SequenceTypeDNA.o ../src/GENtle-TGraphScale.o ../src/GENtle-PlasmidCanvasHandlers.o ../src/GENtle-MyChild.o ../src/GENtle-ureadseq.o ../src/ipc/GENtle-element.o ../src/ipc/GENtle-pars.o ../src/ipc/GENtle-gp_out.o ../src/ipc/GENtle-ipc.o ../src/GENtle-CloneManager.o ../src/GENtle-SequenceTypeAlign.o ../src/GENtle-TPDB.o ../src/GENtle-TPrimerDialog.o ../src/GENtle-SCFtype.o ../src/GENtle-TCalculator.o ../src/GENtle-TVectorTree.o ../src/GENtle-TItemEditDialog.o ../src/GENtle-TAlignmentDialog.o ../src/GENtle-TextImportDialog.o ../src/GENtle-TPrimer.o ../src/GENtle-ChildBase.o ../src/GENtle-PCR_Troubleshoot.o ../src/GENtle-ManageDatabase.o ../src/GENtle-SequenceTypeAAstructure.o ../src/GENtle-PlasmidCanvasCircular.o ../src/GENtle-TVirtualGel.o ../src/GENtle-TSilmutDialog.o -L/usr/lib/aarch64-linux-gnu -pthread -lwx_gtk3u_xrc-3.2 -lwx_gtk3u_html-3.2 -lwx_gtk3u_qa-3.2 -lwx_gtk3u_core-3.2 -lwx_baseu_xml-3.2 -lwx_baseu_net-3.2 -lwx_baseu-3.2 -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/ -lmariadb -ltinyxml -L/usr/lib -lsqlite3 -lgtest -lgtest_main libtool: link: g++ -g -O2 "-ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=." -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DGTEST_HAS_PTHREAD=1 -DTESTING -g -O2 "-ffile-prefix-map=/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1=." -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -DHOMEDIR=\"/usr/share/gentle\" -I/usr/include/mariadb -I/usr/include/mariadb/mysql -DUSEMYSQL -I/usr/lib/aarch64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -o my_tests ../src/my_tests-main.o my_tests-main_test.o my_tests-TXMLfile_test.o ../src/GENtle-MyFrame.o ../src/GENtle-TVectorEditorItems.o ../src/GENtle-ProgramOptionsDialog.o ../src/GENtle-TXMLfile.o ../src/GENtle-TGraphDisplay.o ../src/GENtle-AutoAnnotate.o ../src/GENtle-TPhylip.o ../src/GENtle-RestrictionEnzymes.o ../src/GENtle-SequenceTypeRestriction.o ../src/GENtle-TProteolysis.o ../src/GENtle-CloningAssistant.o ../src/GENtle-SequenceTypeAA.o ../src/GENtle-ABIviewer.o ../src/GENtle-AlignmentAppearanceDialog.o ../src/GENtle-TMainTree.o ../src/GENtle-SequenceTypes.o ../src/GENtle-FindSequenceDialog.o ../src/GENtle-TDotPlot.o ../src/GENtle-TStorage.o ../src/GENtle-TIMGreader.o ../src/GENtle-Alignment.o ../src/GENtle-TVectorEditorEnzymes.o ../src/GENtle-SendHTTP.o ../src/GENtle-TSequencingAssistantDialog.o ../src/GENtle-TRestrictionIdentifier.o ../src/GENtle-PlasmidCanvasLinear.o ../src/GENtle-todo.o ../src/GENtle-TLigationDialog.o ../src/GENtle-TVectorEditor.o ../src/GENtle-TGraph.o ../src/GENtle-TImageDisplay.o ../src/GENtle-PlasmidCanvas.o ../src/GENtle-TClone.o ../src/GENtle-TUndo.o ../src/GENtle-util.o ../src/GENtle-ABItype.o ../src/GENtle-ncoils.o ../src/GENtle-CGview.o ../src/GENtle-ExternalInterface.o ../src/GENtle-TUReadSeq.o ../src/GENtle-TRestrictionEditor.o ../src/GENtle-PrimerDesign.o ../src/GENtle-OnlineTools.o ../src/GENtle-MiscDialogs.o ../src/GENtle-SequenceTypeABI.o ../src/GENtle-TStoreAllDialog.o ../src/GENtle-AminoAcids.o ../src/GENtle-CoolCanvas.o ../src/GENtle-TVector.o ../src/GENtle-TEliteLaChromLogDialog.o ../src/GENtle-SequenceTypeFeature.o ../src/GENtle-ExternalBLAST.o ../src/GENtle-SequenceCanvas.o ../src/GENtle-SequenceTypePlot.o ../src/GENtle-ExternalNCBI.o ../src/GENtle-TPhyloTree.o ../src/GENtle-GenBank.o ../src/GENtle-SequenceTypeDNA.o ../src/GENtle-TGraphScale.o ../src/GENtle-PlasmidCanvasHandlers.o ../src/GENtle-MyChild.o ../src/GENtle-ureadseq.o ../src/ipc/GENtle-element.o ../src/ipc/GENtle-pars.o ../src/ipc/GENtle-gp_out.o ../src/ipc/GENtle-ipc.o ../src/GENtle-CloneManager.o ../src/GENtle-SequenceTypeAlign.o ../src/GENtle-TPDB.o ../src/GENtle-TPrimerDialog.o ../src/GENtle-SCFtype.o ../src/GENtle-TCalculator.o ../src/GENtle-TVectorTree.o ../src/GENtle-TItemEditDialog.o ../src/GENtle-TAlignmentDialog.o ../src/GENtle-TextImportDialog.o ../src/GENtle-TPrimer.o ../src/GENtle-ChildBase.o ../src/GENtle-PCR_Troubleshoot.o ../src/GENtle-ManageDatabase.o ../src/GENtle-SequenceTypeAAstructure.o ../src/GENtle-PlasmidCanvasCircular.o ../src/GENtle-TVirtualGel.o ../src/GENtle-TSilmutDialog.o -Wl,-z -Wl,relro -Wl,-z -Wl,now -L/usr/lib/aarch64-linux-gnu/ -L/usr/lib/aarch64-linux-gnu -lwx_gtk3u_xrc-3.2 -lwx_gtk3u_html-3.2 -lwx_gtk3u_qa-3.2 -lwx_gtk3u_core-3.2 -lwx_baseu_xml-3.2 -lwx_baseu_net-3.2 -lwx_baseu-3.2 -lmariadb -ltinyxml -L/usr/lib -lsqlite3 -lgtest -lgtest_main -pthread make[3]: Leaving directory '/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/tests' make check-TESTS @@ -1497,7 +1533,7 @@ make[2]: Entering directory '/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/src' make[3]: Entering directory '/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/src' /usr/bin/mkdir -p '/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/debian/gentle/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c GENtle '/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/debian/gentle/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c GENtle '/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/debian/gentle/usr/bin' libtool: install: /usr/bin/install -c GENtle /build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/debian/gentle/usr/bin/GENtle make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/gentle-1.9.5~alpha2+dfsg1/src' @@ -1561,12 +1597,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3215108/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3215108/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4103563 and its subdirectories -I: Current time: Tue Dec 3 13:39:59 -12 2024 -I: pbuilder-time-stamp: 1733276399 +I: removing directory /srv/workspace/pbuilder/3215108 and its subdirectories +I: Current time: Tue Jan 6 22:08:03 +14 2026 +I: pbuilder-time-stamp: 1767686883