Diff of the two buildlogs: -- --- b1/build.log 2025-11-05 22:31:21.509111198 +0000 +++ b2/build.log 2025-11-05 22:32:22.949180989 +0000 @@ -1,7 +1,6 @@ -W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Wed Nov 5 10:29:49 -12 2025 -I: pbuilder-time-stamp: 1762381789 +I: Current time: Wed Dec 9 18:54:23 +14 2026 +I: pbuilder-time-stamp: 1796792063 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +24,85 @@ dpkg-source: info: applying fix_build_debian.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1232325/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/773630/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 9 04:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/773630/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/773630/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1232325' - PS1='# ' - PS2='> ' + INVOCATION_ID=505f0f09293b4d7cb9ea0a38e7403fc2 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=773630 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nryiMM89/pbuilderrc_DBH1 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nryiMM89/b1 --logfile b1/build.log gatk-native-bindings_1.1.0+dfsg-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nryiMM89/pbuilderrc_TOnc --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nryiMM89/b2 --logfile b2/build.log gatk-native-bindings_1.1.0+dfsg-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1232325/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/773630/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -355,7 +387,7 @@ Get: 237 http://deb.debian.org/debian unstable/main arm64 gradle-debian-helper all 2.4 [24.5 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 jarwrapper all 0.81 [9784 B] Get: 239 http://deb.debian.org/debian unstable/main arm64 javahelper all 0.81 [79.4 kB] -Fetched 248 MB in 1s (181 MB/s) +Fetched 248 MB in 1s (204 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) @@ -1141,8 +1173,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Nov 5 22:30:38 UTC 2025. -Universal Time is now: Wed Nov 5 22:30:38 UTC 2025. +Local time is now: Wed Dec 9 04:54:57 UTC 2026. +Universal Time is now: Wed Dec 9 04:54:57 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1540,7 +1572,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-native-bindings_1.1.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/773630/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/773630/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-native-bindings_1.1.0+dfsg-1_source.changes dpkg-buildpackage: info: source package gatk-native-bindings dpkg-buildpackage: info: source version 1.1.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1556,8 +1592,8 @@ dh_autoreconf_clean -O--buildsystem=gradle jh_clean -O--buildsystem=gradle rm -fr debian/_jh_manifest* debian/_jh_build* -Duplicate specification "unlink|u" for option "u" -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" +Duplicate specification "u=s" for option "u" rm -fr debian/.eclipse-build rm -f debian/orbitdeps.debhelper debian/rules override_dh_clean @@ -1585,8 +1621,8 @@ dh_autoreconf -O--buildsystem=gradle dh_auto_configure -O--buildsystem=gradle jh_linkjars -O--buildsystem=gradle -Duplicate specification "unlink|u" for option "u" Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg' dh_auto_build -- jar @@ -1600,18 +1636,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.817 secs. -The client will now receive all logging from the daemon (pid: 1245548). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-1245548.out.log +An attempt to start the daemon took 0.881 secs. +The client will now receive all logging from the daemon (pid: 784752). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-784752.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@360477da -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@360477da -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5e09eb7d +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@41c385a7 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@41c385a7 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@23594d48 Starting Build Compiling initialization script '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@fd2bca +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@61a8c987 Compiling initialization script '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1631,142 +1667,48 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@58f966b7 +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@4d43d17d Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5e09eb7d -Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@58db91de -Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@629e8b1b -:compileJava (Thread[#55,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@23594d48 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@14dcfc4d +Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@3402b40c +:compileJava (Thread[#58,Task worker for ':' Thread 4,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.003 secs. -Up-to-date check for task ':compileJava' took 0.06 secs. It is not up-to-date because: +Putting task artifact state for task ':compileJava' into context took 0.007 secs. +Up-to-date check for task ':compileJava' took 0.036 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 1.621 secs. -:processResources (Thread[#55,Task worker for ':',5,main]) started. +:compileJava (Thread[#58,Task worker for ':' Thread 4,5,main]) completed. Took 0.768 secs. +:processResources (Thread[#58,Task worker for ':' Thread 4,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#55,Task worker for ':',5,main]) completed. Took 0.002 secs. -:classes (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:processResources (Thread[#58,Task worker for ':' Thread 4,5,main]) completed. Took 0.002 secs. +:classes (Thread[#58,Task worker for ':' Thread 4,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:classes (Thread[#58,Task worker for ':' Thread 4,5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#58,Task worker for ':' Thread 4,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/build/debian/gatk-native-bindings.pom -:debianMavenPom (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.108 secs. -:jar (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:debianMavenPom (Thread[#58,Task worker for ':' Thread 4,5,main]) completed. Took 0.064 secs. +:jar (Thread[#58,Task worker for ':' Thread 4,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.01 secs. It is not up-to-date because: No history is available. -:jar (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.163 secs. +:jar (Thread[#58,Task worker for ':' Thread 4,5,main]) completed. Took 0.078 secs. -BUILD SUCCESSFUL in 12s +BUILD SUCCESSFUL in 5s 3 actionable tasks: 3 executed make[1]: Leaving directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg' jh_build -O--buildsystem=gradle - rm -f debian/libgatk-native-bindings-java.debhelper.log - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg' -# Tests do not work with locales with a different decimal separator -# (for example ',') -env LC_ALL=C \ -dh_auto_build -- test - mkdir -p .gradle/init.d - cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-native-bindings -Dfile.encoding=UTF-8 --parallel --max-workers=12 test -openjdk version "21.0.9" 2025-10-21 -OpenJDK Runtime Environment (build 21.0.9+10-Debian-1) -OpenJDK 64-Bit Server VM (build 21.0.9+10-Debian-1, mixed mode, sharing) -Initialized native services in: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/native -To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. -Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.982 secs. -The client will now receive all logging from the daemon (pid: 1248646). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-1248646.out.log -Daemon will be stopped at the end of the build stopping after processing -Closing daemon's stdin at end of input. -The daemon will no longer process any standard input. -Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f8e37db -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f8e37db -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@9f89a33 -Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@20a4ff47 -Settings evaluated using settings file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/settings.gradle'. -Projects loaded. Root project using build file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/build.gradle'. -Included projects: [root project 'gatk-native-bindings'] - Keep-alive timer started - Adding Debian repository to project 'gatk-native-bindings' -Parallel execution is an incubating feature. -Evaluating root project 'gatk-native-bindings' using build file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/build.gradle'. -Starting process 'command 'dpkg-parsechangelog''. Working directory: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg Command: dpkg-parsechangelog -S Version -Successfully started process 'command 'dpkg-parsechangelog'' -build for version:1.1.0 - Adding Maven pom generation to project 'gatk-native-bindings' - Linking the generated javadoc to the system JDK API documentation -All projects evaluated. -Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@31831402 -Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@9f89a33 -Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5c3814a1 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@60e4d208 -:compileJava (Thread[#55,Task worker for ':',5,main]) started. -:compileJava -Putting task artifact state for task ':compileJava' into context took 0.005 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.073 secs). -:compileJava UP-TO-DATE -:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 0.15 secs. -:processResources (Thread[#56,Task worker for ':' Thread 2,5,main]) started. -:processResources -Putting task artifact state for task ':processResources' into context took 0.0 secs. -file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/main/resources', not found -Skipping task ':processResources' as it has no source files and no previous output files. -:processResources NO-SOURCE -:processResources (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.003 secs. -:classes (Thread[#56,Task worker for ':' Thread 2,5,main]) started. -:classes -Skipping task ':classes' as it has no actions. -:classes UP-TO-DATE -:classes (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.001 secs. -:compileTestJava (Thread[#56,Task worker for ':' Thread 2,5,main]) started. -:compileTestJava -Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/test/java', not found -Skipping task ':compileTestJava' as it has no source files and no previous output files. -:compileTestJava NO-SOURCE -:compileTestJava (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.009 secs. -:processTestResources (Thread[#56,Task worker for ':' Thread 2,5,main]) started. -:processTestResources -Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/test/resources', not found -Skipping task ':processTestResources' as it has no source files and no previous output files. -:processTestResources NO-SOURCE -:processTestResources (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.011 secs. -:testClasses (Thread[#56,Task worker for ':' Thread 2,5,main]) started. -:testClasses -Skipping task ':testClasses' as it has no actions. -:testClasses UP-TO-DATE -:testClasses (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:test (Thread[#65,Task worker for ':' Thread 11,5,main]) started. -:test -Putting task artifact state for task ':test' into context took 0.0 secs. -Skipping task ':test' as it has no source files and no previous output files. -:test NO-SOURCE -:test (Thread[#65,Task worker for ':' Thread 11,5,main]) completed. Took 0.009 secs. - -BUILD SUCCESSFUL in 10s -1 actionable task: 1 up-to-date -make[1]: Leaving directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle dh_prep -O--buildsystem=gradle @@ -1776,7 +1718,7 @@ install -m0755 -d /build/reproducible-path/gatk-native-bindings-1.1.0\+dfsg/debian/libgatk-native-bindings-java jh_installjavadoc -O--buildsystem=gradle Duplicate specification "A" for option "A" -Duplicate specification "A" for option "A" +Duplicate specification "author|A=s" for option "A" dh_installdocs -O--buildsystem=gradle install -m0755 -d debian/libgatk-native-bindings-java/usr/share/doc/libgatk-native-bindings-java install -p -m0644 debian/copyright debian/libgatk-native-bindings-java/usr/share/doc/libgatk-native-bindings-java/copyright @@ -1793,7 +1735,7 @@ ln -s gatk-native-bindings-1.1.0.jar debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar jh_classpath -O--buildsystem=gradle jh_manifest -plibgatk-native-bindings-java --classpath=/usr/lib/jvm/default-java/lib/tools.jar debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar -Duplicate specification "V:s" for option "V" +Duplicate specification "version|V" for option "V" Duplicate specification "version|V" for option "V" Updating symlinked /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.1.0.jar (via debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar) Reading manifest from /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.1.0.jar @@ -1887,12 +1829,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/773630/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/773630/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1232325 and its subdirectories -I: Current time: Wed Nov 5 10:31:20 -12 2025 -I: pbuilder-time-stamp: 1762381880 +I: removing directory /srv/workspace/pbuilder/773630 and its subdirectories +I: Current time: Wed Dec 9 18:55:21 +14 2026 +I: pbuilder-time-stamp: 1796792121