Diff of the two buildlogs: -- --- b1/build.log 2024-10-30 07:46:52.807487560 +0000 +++ b2/build.log 2024-10-30 07:48:13.924587899 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Dec 2 02:06:59 -12 2025 -I: pbuilder-time-stamp: 1764684419 +I: Current time: Wed Dec 3 04:09:54 +14 2025 +I: pbuilder-time-stamp: 1764684594 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying rename_bseq1_t.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1168235/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2211237/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 2 14:10 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2211237/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2211237/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='f88a20b68a6d4fc694c070d6e721b2f4' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1168235' - PS1='# ' - PS2='> ' + INVOCATION_ID=3f3da4b614e9498db4d009fee182b07f + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2211237 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hoPbYBFc/pbuilderrc_GGzA --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hoPbYBFc/b1 --logfile b1/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hoPbYBFc/pbuilderrc_uZP4 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hoPbYBFc/b2 --logfile b2/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1168235/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2211237/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -287,7 +319,7 @@ Get: 165 http://deb.debian.org/debian unstable/main arm64 libfml0 arm64 0.1+git20190320.b499514-1+b2 [65.9 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libfml-dev arm64 0.1+git20190320.b499514-1+b2 [80.0 kB] -Fetched 231 MB in 1s (174 MB/s) +Fetched 231 MB in 1s (257 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20066 files and directories currently installed.) @@ -1165,7 +1197,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/2211237/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2211237/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-fermilite dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1219,18 +1255,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.536 secs. -The client will now receive all logging from the daemon (pid: 1185721). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-1185721.out.log +An attempt to start the daemon took 1.027 secs. +The client will now receive all logging from the daemon (pid: 2223506). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-2223506.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@37697192 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@37697192 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@83ecdfc +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ea624c5 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ea624c5 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@be45c94 Starting Build Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@21019359 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@26aa8c36 Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1247,23 +1283,23 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@3b018e5b +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6ddf078f Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@83ecdfc -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f3e70c9 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d9625d5 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@be45c94 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@60007b9e +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@729aa98c :compileJava (Thread[#50,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.017 secs. -Up-to-date check for task ':compileJava' took 0.062 secs. It is not up-to-date because: +Putting task artifact state for task ':compileJava' into context took 0.005 secs. +Up-to-date check for task ':compileJava' took 0.019 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 2.398 secs. +:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 0.881 secs. :buildFermiLib (Thread[#50,Task worker for ':',5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Up-to-date check for task ':buildFermiLib' took 0.01 secs. It is not up-to-date because: +Up-to-date check for task ':buildFermiLib' took 0.002 secs. It is not up-to-date because: No history is available. using /usr/lib/jvm/java-21-openjdk-arm64 -> /usr/lib/jvm/java-21-openjdk-arm64 as JAVA_HOME Starting process 'command 'make''. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c Command: make @@ -1272,14 +1308,14 @@ gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-21-openjdk-arm64/include -I/usr/lib/jvm/java-21-openjdk-arm64/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/aarch64-linux-gnu/libfml.so -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' -:buildFermiLib (Thread[#50,Task worker for ':',5,main]) completed. Took 0.61 secs. +:buildFermiLib (Thread[#50,Task worker for ':',5,main]) completed. Took 0.251 secs. :processResources (Thread[#50,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.004 secs. +:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.005 secs. :classes (Thread[#50,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. @@ -1290,15 +1326,15 @@ Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom -:debianMavenPom (Thread[#50,Task worker for ':',5,main]) completed. Took 0.215 secs. +:debianMavenPom (Thread[#50,Task worker for ':',5,main]) completed. Took 0.081 secs. :jar (Thread[#50,Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.013 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.005 secs. It is not up-to-date because: No history is available. -:jar (Thread[#50,Task worker for ':',5,main]) completed. Took 0.126 secs. +:jar (Thread[#50,Task worker for ':',5,main]) completed. Took 0.044 secs. -BUILD SUCCESSFUL in 17s +BUILD SUCCESSFUL in 6s 4 actionable tasks: 4 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' @@ -1314,17 +1350,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.727 secs. -The client will now receive all logging from the daemon (pid: 1191350). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-1191350.out.log +An attempt to start the daemon took 0.997 secs. +The client will now receive all logging from the daemon (pid: 2228031). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-2228031.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@17ad7e57 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@17ad7e57 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5cc74e29 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@12de9300 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@12de9300 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3b74718 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@29bc1247 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5246f453 Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Included projects: [root project 'gatk-fermilite'] @@ -1336,75 +1372,75 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@75ad696a +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@266dafe8 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5cc74e29 -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@22fdd564 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@6e68d189 -:compileJava (Thread[#50,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3b74718 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@11d6e77b +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7e8e4533 +:compileJava (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.186 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.088 secs). +Putting task artifact state for task ':compileJava' into context took 0.005 secs. +Skipping task ':compileJava' as it is up-to-date (took 0.038 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 0.407 secs. -:buildFermiLib (Thread[#50,Task worker for ':',5,main]) started. +:compileJava (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 0.096 secs. +:buildFermiLib (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Skipping task ':buildFermiLib' as it is up-to-date (took 0.015 secs). +Skipping task ':buildFermiLib' as it is up-to-date (took 0.004 secs). :buildFermiLib UP-TO-DATE -:buildFermiLib (Thread[#50,Task worker for ':',5,main]) completed. Took 0.024 secs. -:processResources (Thread[#50,Task worker for ':',5,main]) started. +:buildFermiLib (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 0.008 secs. +:processResources (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.012 secs. -:classes (Thread[#50,Task worker for ':',5,main]) started. +:processResources (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 0.003 secs. +:classes (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#50,Task worker for ':',5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[#50,Task worker for ':',5,main]) started. +:classes (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. +:compileTestJava (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@4b62f2a2 +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@76588814 Loading the Maven rules... Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian -Up-to-date check for task ':compileTestJava' took 1.206 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 0.429 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. -:compileTestJava (Thread[#50,Task worker for ':',5,main]) completed. Took 3.01 secs. -:processTestResources (Thread[#50,Task worker for ':',5,main]) started. +:compileTestJava (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 1.377 secs. +:processTestResources (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.009 secs. -:testClasses (Thread[#50,Task worker for ':',5,main]) started. +:processTestResources (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 0.002 secs. +:testClasses (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#50,Task worker for ':',5,main]) completed. Took 0.0 secs. -:test (Thread[#50,Task worker for ':',5,main]) started. +:testClasses (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. +:test (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. -Up-to-date check for task ':test' took 0.152 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 0.069 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath37780382386994244txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath2291600920739278541txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.029 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test +Finished generating test XML results (0.015 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.094 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test -:test (Thread[#50,Task worker for ':',5,main]) completed. Took 3.067 secs. +Finished generating test html results (0.031 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test +:test (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 1.327 secs. -BUILD SUCCESSFUL in 20s +BUILD SUCCESSFUL in 8s 4 actionable tasks: 2 executed, 2 up-to-date make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' create-stamp debian/debhelper-build-stamp @@ -1429,9 +1465,9 @@ dpkg-gencontrol: warning: Depends field of package libgatk-fermilite-java: substitution variable ${java:Depends} used, but is not defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libgatk-fermilite-jni-dbgsym' in '../libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_arm64.deb'. dpkg-deb: building package 'libgatk-fermilite-java' in '../libgatk-fermilite-java_1.2.1+dfsg-2_all.deb'. dpkg-deb: building package 'libgatk-fermilite-jni' in '../libgatk-fermilite-jni_1.2.1+dfsg-2_arm64.deb'. +dpkg-deb: building package 'libgatk-fermilite-jni-dbgsym' in '../libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1439,12 +1475,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2211237/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2211237/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1168235 and its subdirectories -I: Current time: Tue Dec 2 02:09:49 -12 2025 -I: pbuilder-time-stamp: 1764684589 +I: removing directory /srv/workspace/pbuilder/2211237 and its subdirectories +I: Current time: Wed Dec 3 04:11:10 +14 2025 +I: pbuilder-time-stamp: 1764684670