Diff of the two buildlogs: -- --- b1/build.log 2024-12-16 20:15:36.667254824 +0000 +++ b2/build.log 2024-12-16 20:18:52.834370789 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jan 18 14:35:20 -12 2026 -I: pbuilder-time-stamp: 1768790120 +I: Current time: Tue Dec 17 10:15:39 +14 2024 +I: pbuilder-time-stamp: 1734380139 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying disable_prov I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3469332/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4082055/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 16 20:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4082055/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4082055/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='809c1a4515b74c27a2b8b5fcf0e7a57b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3469332' - PS1='# ' - PS2='> ' + INVOCATION_ID=53ca78cf10594e13b36ec2958757624e + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4082055 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7Karj1Ch/pbuilderrc_c3Tt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7Karj1Ch/b1 --logfile b1/build.log cwltool_3.1.20241112140730-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7Karj1Ch/pbuilderrc_K92f --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7Karj1Ch/b2 --logfile b2/build.log cwltool_3.1.20241112140730-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3469332/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/4082055/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -418,7 +450,7 @@ Get: 237 http://deb.debian.org/debian unstable/main arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-1 [29.5 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 python3-sphinxcontrib.autoprogram all 0.1.9-1 [10.6 kB] Get: 239 http://deb.debian.org/debian unstable/main arm64 python3-spython all 0.3.13-2 [55.2 kB] -Fetched 99.8 MB in 1s (121 MB/s) +Fetched 99.8 MB in 1s (197 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20082 files and directories currently installed.) @@ -1194,8 +1226,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Jan 19 02:36:10 UTC 2026. -Universal Time is now: Mon Jan 19 02:36:10 UTC 2026. +Local time is now: Mon Dec 16 20:16:15 UTC 2024. +Universal Time is now: Mon Dec 16 20:16:15 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.1-2) ... @@ -1418,7 +1450,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/cwltool-3.1.20241112140730/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cwltool_3.1.20241112140730-1_source.changes +I: user script /srv/workspace/pbuilder/4082055/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/4082055/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/cwltool-3.1.20241112140730/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cwltool_3.1.20241112140730-1_source.changes dpkg-buildpackage: info: source package cwltool dpkg-buildpackage: info: source version 3.1.20241112140730-1 dpkg-buildpackage: info: source distribution unstable @@ -3494,7 +3530,7 @@ Copying cwltool.egg-info to build/bdist.linux-aarch64/wheel/./cwltool-3.1.20241112140730.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cwltool-3.1.20241112140730.dist-info/WHEEL -creating '/build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.13/.tmp-bz8rec3u/cwltool-3.1.20241112140730-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.13/.tmp-h2u7se0l/cwltool-3.1.20241112140730-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cwltool/__init__.py' adding 'cwltool/__main__.py' adding 'cwltool/_version.py' @@ -5510,7 +5546,7 @@ Copying cwltool.egg-info to build/bdist.linux-aarch64/wheel/./cwltool-3.1.20241112140730.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cwltool-3.1.20241112140730.dist-info/WHEEL -creating '/build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.12/.tmp-t8yawxfc/cwltool-3.1.20241112140730-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.12/.tmp-0bvuvz9z/cwltool-3.1.20241112140730-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cwltool/__init__.py' adding 'cwltool/__main__.py' adding 'cwltool/_version.py' @@ -6468,8 +6504,8 @@ make[1]: Entering directory '/build/reproducible-path/cwltool-3.1.20241112140730' PYTHONPATH=/build/reproducible-path/cwltool-3.1.20241112140730/cwltool /usr/bin/make docs make[2]: Entering directory '/build/reproducible-path/cwltool-3.1.20241112140730' -/bin/sh: 1: git: not found -/bin/sh: 1: git: not found +/bin/sh: line 1: git: command not found +/bin/sh: line 1: git: command not found cd docs && /usr/bin/make html make[3]: Entering directory '/build/reproducible-path/cwltool-3.1.20241112140730/docs' Running Sphinx v8.1.3 @@ -6479,11 +6515,11 @@ loading intersphinx inventory 'schema_salad' from https://schema-salad.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'rdflib' from https://rdflib.readthedocs.io/en/6.2.0/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://rdflib.readthedocs.io/en/6.2.0/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdflib.readthedocs.io', port=443): Max retries exceeded with url: /en/6.2.0/objects.inv (Caused by NameResolutionError(": Failed to resolve 'rdflib.readthedocs.io' ([Errno -3] Temporary failure in name resolution)")) +intersphinx inventory 'https://rdflib.readthedocs.io/en/6.2.0/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdflib.readthedocs.io', port=443): Max retries exceeded with url: /en/6.2.0/objects.inv (Caused by NameResolutionError(": Failed to resolve 'rdflib.readthedocs.io' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://schema-salad.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='schema-salad.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'schema-salad.readthedocs.io' ([Errno -3] Temporary failure in name resolution)")) +intersphinx inventory 'https://schema-salad.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='schema-salad.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'schema-salad.readthedocs.io' ([Errno -3] Temporary failure in name resolution)")) [AutoAPI] Reading files... [ 2%] /build/reproducible-path/cwltool-3.1.20241112140730/cwltool/argparser.py [AutoAPI] Reading files... [ 4%] /build/reproducible-path/cwltool-3.1.20241112140730/cwltool/workflow_job.py [AutoAPI] Reading files... [ 6%] /build/reproducible-path/cwltool-3.1.20241112140730/cwltool/workflow.py @@ -6800,7 +6836,7 @@ --ignore-glob "*test_http_input.py" \ -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' \ -n auto --ignore cwltool/schemas/ -rs --pyargs cwltool" dh_auto_test -I: pybuild base:311: cd /build/reproducible-path/cwltool-3.1.20241112140730; export PATH=/build/reproducible-path/cwltool-3.1.20241112140730/debian/cwltool/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games ; cd /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.13/build; export PYTHONPATH=/build/reproducible-path/cwltool-3.1.20241112140730; python3.13 -m pytest --ignore-glob *test_http_input.py -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' -n auto --ignore cwltool/schemas/ -rs --pyargs cwltool +I: pybuild base:311: cd /build/reproducible-path/cwltool-3.1.20241112140730; export PATH=/build/reproducible-path/cwltool-3.1.20241112140730/debian/cwltool/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path ; cd /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.13/build; export PYTHONPATH=/build/reproducible-path/cwltool-3.1.20241112140730; python3.13 -m pytest --ignore-glob *test_http_input.py -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' -n auto --ignore cwltool/schemas/ -rs --pyargs cwltool ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cwltool-3.1.20241112140730 @@ -6809,16 +6845,16 @@ created: 12/12 workers 12 workers [666 items] -..sss.....sssssss......................................sssssssssssssssss [ 10%] -sss.....ssss....................ssss............s....................... [ 21%] +.......................s....................................sss......... [ 10%] +ssssssssssssssssssssssss................................ssssssssss....s. [ 21%] .......................................sss.............................. [ 32%] -..........sss.s......................................ssssss........s.sss [ 43%] -sssssssss........s....ssss...............s..........sssssssssss.ssssssss [ 54%] -...ss...........sssssssss...s...........ss..ssss......s.ssssss..ssssssss [ 64%] -.....ss..........................ss.s.........ss............s.........ss [ 75%] -s......s..............sssssss......ssss....ssssssssssss.s............... [ 86%] -...ssss.sss..........................................s.ss......ss......s [ 97%] -.................. [100%] +.......................ssss.......................................ssssss [ 43%] +sssssss..sssssssssssssssssss...ssssss...ssss.............s.............. [ 54%] +....ss......s.ssssss.........ssssssssssssss...s......s.........ss..sssss [ 64%] +ssss.....ss.s....ss....s............s.....................sss....s...... [ 75%] +...............sss..........sssss..ssss...s.....sssssssssss....s.......s [ 86%] +ssss..........................................sss..................s.... [ 97%] +.s..........s..... [100%] =============================== warnings summary =============================== cwltool/tests/test_dependencies.py:28: 12 warnings /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.13/build/cwltool/tests/test_dependencies.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @@ -6841,12 +6877,12 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ +SKIPPED [1] cwltool/tests/test_environment.py:244: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:221: This test is non-deterministic SKIPPED [1] cwltool/tests/test_ext.py:231: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:238: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1118: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_environment.py:244: Requires the singularity executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1139: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1164: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1191: Requires the docker executable on the system path. @@ -6856,34 +6892,29 @@ SKIPPED [4] cwltool/tests/test_examples.py:1284: Requires the docker executable on the system path. SKIPPED [3] cwltool/tests/test_check.py:12: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path. -SKIPPED [11] cwltool/tests/test_toolargparse.py:207: Requires the docker executable on the system path. SKIPPED [9] cwltool/tests/test_override.py:76: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_override.py:119: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_examples.py:1379: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_cuda.py:25: nvidia-smi required for CUDA not detected -SKIPPED [1] cwltool/tests/test_cuda.py:35: nvidia-smi required for CUDA not detected -SKIPPED [1] cwltool/tests/test_cuda.py:46: nvidia-smi required for CUDA not detected -SKIPPED [1] cwltool/tests/test_cuda.py:55: nvidia-smi required for CUDA not detected -SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path. SKIPPED [2] cwltool/tests/test_pack.py:187: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_parallel.py:11: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_parallel.py:24: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_path_checks.py:42: Requires the docker executable on the system path. SKIPPED [7] cwltool/tests/test_path_checks.py:64: Requires the docker executable on the system path. SKIPPED [7] cwltool/tests/test_path_checks.py:88: Requires the docker executable on the system path. +SKIPPED [11] cwltool/tests/test_toolargparse.py:207: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_cuda.py:25: nvidia-smi required for CUDA not detected +SKIPPED [1] cwltool/tests/test_cuda.py:35: nvidia-smi required for CUDA not detected +SKIPPED [1] cwltool/tests/test_cuda.py:46: nvidia-smi required for CUDA not detected +SKIPPED [1] cwltool/tests/test_cuda.py:55: nvidia-smi required for CUDA not detected +SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_relocate.py:12: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_relocate.py:18: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_examples.py:1379: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_dependencies.py:26: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:47: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:110: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:116: modulecmd not installed SKIPPED [1] cwltool/tests/test_dependencies.py:140: modulecmd not installed SKIPPED [1] cwltool/tests/test_docker.py:21: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:57: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:71: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:85: Requires the docker executable on the system path. @@ -6898,24 +6929,32 @@ SKIPPED [1] cwltool/tests/test_docker.py:244: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:269: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker_info.py:4: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_js_sandbox.py:74: Requires the podman executable on the system path. -SKIPPED [1] cwltool/tests/test_js_sandbox.py:94: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:200: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:200: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:220: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:220: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_js_sandbox.py:74: Requires the podman executable on the system path. +SKIPPED [1] cwltool/tests/test_js_sandbox.py:94: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:244: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_tmpdir.py:116: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_tmpdir.py:229: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_misc_cli.py:43: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:46: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:190: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:251: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:315: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:85: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:100: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:116: Requires that version 2.6.x of singularity executable version is on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:140: Requires that version 3.x of singularity executable version is on the system path. +SKIPPED [1] cwltool/tests/test_misc_cli.py:43: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:14: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:23: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:33: Requires the docker executable on the system path. @@ -6928,19 +6967,16 @@ SKIPPED [1] cwltool/tests/test_ext.py:152: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:183: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:204: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:60: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:81: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:102: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:21: Requires that version 2.6.x of singularity executable version is on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:190: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:251: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:315: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:46: Requires the singularity executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path. -================ 494 passed, 172 skipped, 26 warnings in 14.58s ================ +================ 494 passed, 172 skipped, 26 warnings in 14.09s ================ I: pybuild pybuild:334: rm -Rf /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.13/build/tmp/ /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.13/build/main.cwl /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.13/build/output.txt* -I: pybuild base:311: cd /build/reproducible-path/cwltool-3.1.20241112140730; export PATH=/build/reproducible-path/cwltool-3.1.20241112140730/debian/cwltool/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games ; cd /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.12/build; export PYTHONPATH=/build/reproducible-path/cwltool-3.1.20241112140730; python3.12 -m pytest --ignore-glob *test_http_input.py -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' -n auto --ignore cwltool/schemas/ -rs --pyargs cwltool +I: pybuild base:311: cd /build/reproducible-path/cwltool-3.1.20241112140730; export PATH=/build/reproducible-path/cwltool-3.1.20241112140730/debian/cwltool/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path ; cd /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.12/build; export PYTHONPATH=/build/reproducible-path/cwltool-3.1.20241112140730; python3.12 -m pytest --ignore-glob *test_http_input.py -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' -n auto --ignore cwltool/schemas/ -rs --pyargs cwltool ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cwltool-3.1.20241112140730 @@ -6949,16 +6985,16 @@ created: 12/12 workers 12 workers [666 items] -.sssssssss..........sssss..........s.................................... [ 10%] -................................................................ssssssss [ 21%] -ssssssssssssssss.......................sss..........................ssss [ 32%] -.....................................................................sss [ 43%] -ssssssssss.sss.ssssssssssssssss...ssssss..ssss.s............s........... [ 54%] -.............ss..ssssss...s.....sssssssss.s.....ssssssssssssss.......... [ 64%] -...ss....s..ss.........ss....s.........................s.......sss...... [ 75%] -....s......ssss.s.......s..sss...............ssss....s......sssss.s..... [ 86%] -...sss..s....ssssss..................................s.ssss............. [ 97%] -.s................ [100%] +ss.....................sssssssssssssssss................................ [ 10%] +...............ssssssssssssssssssss..................................... [ 21%] +.........................................sss..........................ss [ 32%] +s.s...............................................................ssssss [ 43%] +sssssssssssss...ssssss..ssss.s........s.......sssssssssssss............. [ 54%] +..........s.s..sssssssss.....ssssss.......s..s......ssssssssssssss...... [ 64%] +............ss..ss.s...........ss................s...........s.....sss.. [ 75%] +.......s...................ssssss.sss.....s.ssssss.................sss.s [ 86%] +...ssss.......sssss.....s....................sss.....................s.. [ 97%] +......s..s........ [100%] =============================== warnings summary =============================== cwltool/tests/test_dependencies.py:28: 12 warnings /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.12/build/cwltool/tests/test_dependencies.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @@ -6976,19 +7012,20 @@ conj_graph = ConjunctiveGraph(store=graph.store) .pybuild/cpython3_3.12/build/cwltool/tests/test_examples.py::test_js_console_cmd_line_tool[] +.pybuild/cpython3_3.12/build/cwltool/tests/test_examples.py::test_js_console_cmd_line_tool[--parallel --debug] /usr/lib/python3/dist-packages/cwl_utils/sandboxjs.py:476: FutureWarning: Possible nested set at position 2 re.findall(r"^[[](?:log|err)[]].*$", stderr, flags=re.MULTILINE) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_environment.py:244: Requires the singularity executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1118: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1139: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1164: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:221: This test is non-deterministic SKIPPED [1] cwltool/tests/test_ext.py:231: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1139: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:238: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_environment.py:244: Requires the singularity executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1164: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1191: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1215: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1236: Requires the docker executable on the system path. @@ -6996,8 +7033,6 @@ SKIPPED [4] cwltool/tests/test_examples.py:1284: Requires the docker executable on the system path. SKIPPED [3] cwltool/tests/test_check.py:12: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path. -SKIPPED [9] cwltool/tests/test_override.py:76: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_override.py:119: Requires the docker executable on the system path. SKIPPED [2] cwltool/tests/test_pack.py:187: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_parallel.py:11: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_parallel.py:24: Requires the docker executable on the system path. @@ -7011,8 +7046,13 @@ SKIPPED [1] cwltool/tests/test_cuda.py:55: nvidia-smi required for CUDA not detected SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_examples.py:1379: Requires the docker executable on the system path. +SKIPPED [9] cwltool/tests/test_override.py:76: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_override.py:119: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_relocate.py:12: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_relocate.py:18: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_dependencies.py:26: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:47: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:110: galaxy-tool-util is not installed @@ -7020,9 +7060,6 @@ SKIPPED [1] cwltool/tests/test_dependencies.py:140: modulecmd not installed SKIPPED [1] cwltool/tests/test_docker.py:21: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:57: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:71: Requires the docker executable on the system path. @@ -7040,9 +7077,9 @@ SKIPPED [1] cwltool/tests/test_docker_info.py:4: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_js_sandbox.py:74: Requires the podman executable on the system path. SKIPPED [1] cwltool/tests/test_js_sandbox.py:94: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:200: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:200: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:220: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:220: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:244: Requires the docker executable on the system path. @@ -7055,30 +7092,30 @@ SKIPPED [1] cwltool/tests/test_iwdr.py:190: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:251: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:315: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:67: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:73: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:103: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:139: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:152: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:183: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_ext.py:204: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_secrets.py:60: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_secrets.py:81: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_secrets.py:102: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:21: Requires that version 2.6.x of singularity executable version is on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:85: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:100: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:116: Requires that version 2.6.x of singularity executable version is on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:140: Requires that version 3.x of singularity executable version is on the system path. -SKIPPED [1] cwltool/tests/test_misc_cli.py:43: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:14: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:23: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:33: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:44: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:56: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:67: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_secrets.py:60: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_secrets.py:81: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_secrets.py:102: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:21: Requires that version 2.6.x of singularity executable version is on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:73: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:103: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:139: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:152: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:183: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_ext.py:204: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_misc_cli.py:43: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path. -================ 494 passed, 172 skipped, 26 warnings in 13.34s ================ +================ 494 passed, 172 skipped, 27 warnings in 15.18s ================ I: pybuild pybuild:334: rm -Rf /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.12/build/tmp/ /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.12/build/main.cwl /build/reproducible-path/cwltool-3.1.20241112140730/.pybuild/cpython3_3.12/build/output.txt* find .pybuild -name "out" -type f -delete make[1]: Leaving directory '/build/reproducible-path/cwltool-3.1.20241112140730' @@ -7340,8 +7377,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'cwltool' in '../cwltool_3.1.20241112140730-1_all.deb'. dpkg-deb: building package 'cwltool-doc' in '../cwltool-doc_3.1.20241112140730-1_all.deb'. +dpkg-deb: building package 'cwltool' in '../cwltool_3.1.20241112140730-1_all.deb'. dpkg-genbuildinfo --build=binary -O../cwltool_3.1.20241112140730-1_arm64.buildinfo dpkg-genchanges --build=binary -O../cwltool_3.1.20241112140730-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -7350,12 +7387,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4082055/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4082055/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3469332 and its subdirectories -I: Current time: Sun Jan 18 14:38:35 -12 2026 -I: pbuilder-time-stamp: 1768790315 +I: removing directory /srv/workspace/pbuilder/4082055 and its subdirectories +I: Current time: Tue Dec 17 10:18:51 +14 2024 +I: pbuilder-time-stamp: 1734380331