Diff of the two buildlogs: -- --- b1/build.log 2024-10-28 11:45:54.888787867 +0000 +++ b2/build.log 2024-10-28 11:51:20.381187791 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 30 06:06:54 -12 2025 -I: pbuilder-time-stamp: 1764526014 +I: Current time: Tue Oct 29 01:45:58 +14 2024 +I: pbuilder-time-stamp: 1730115958 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying deactivate_tests_using_network.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1975475/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32028/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 28 11:46 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32028/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32028/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='7b9cd9a024244dd4874a6fe6eb579590' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1975475' - PS1='# ' - PS2='> ' + INVOCATION_ID=680a00789c254ded94c070c078c6a40b + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32028 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6bE2vFSh/pbuilderrc_FfLT --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6bE2vFSh/b1 --logfile b1/build.log ciftools-java_6.0.0-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6bE2vFSh/pbuilderrc_w4kv --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6bE2vFSh/b2 --logfile b2/build.log ciftools-java_6.0.0-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1975475/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/32028/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -355,7 +387,7 @@ Get: 233 http://deb.debian.org/debian unstable/main arm64 maven-repo-helper all 1.11 [142 kB] Get: 234 http://deb.debian.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get: 235 http://deb.debian.org/debian unstable/main arm64 maven-debian-helper all 2.6.5 [108 kB] -Fetched 191 MB in 1s (185 MB/s) +Fetched 191 MB in 2s (116 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20057 files and directories currently installed.) @@ -1129,8 +1161,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Nov 30 18:07:27 UTC 2025. -Universal Time is now: Sun Nov 30 18:07:27 UTC 2025. +Local time is now: Mon Oct 28 11:47:17 UTC 2024. +Universal Time is now: Mon Oct 28 11:47:17 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1515,7 +1547,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ciftools-java-6.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ciftools-java_6.0.0-1_source.changes +I: user script /srv/workspace/pbuilder/32028/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/32028/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ciftools-java-6.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ciftools-java_6.0.0-1_source.changes dpkg-buildpackage: info: source package ciftools-java dpkg-buildpackage: info: source version 6.0.0-1 dpkg-buildpackage: info: source distribution unstable @@ -1578,8 +1614,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 14.410 s -[INFO] Finished at: 2025-11-30T06:08:00-12:00 +[INFO] Total time: 41.986 s +[INFO] Finished at: 2024-10-29T01:49:51+14:00 [INFO] ------------------------------------------------------------------------ dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/ciftools-java-6.0.0 -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/ciftools-java-6.0.0/debian -Dmaven.repo.local=/build/reproducible-path/ciftools-java-6.0.0/debian/maven-repo --batch-mode test @@ -1611,7 +1647,7 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.rcsb.cif.CifOptionsTest -[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 1.394 s - in org.rcsb.cif.CifOptionsTest +[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 3.868 s - in org.rcsb.cif.CifOptionsTest [INFO] Running org.rcsb.cif.FootprintTest mismatch in column _citation.pdbx_database_id_PubMed 5,2,[Delta, ByteArray] vs 5,3,[Delta, RunLength, ByteArray] @@ -1657,11 +1693,11 @@ 1405,4,[Delta, RunLength, IntegerPacking, ByteArray] vs 1405,3,[RunLength, IntegerPacking, ByteArray] mismatch in column _atom_site.pdbx_PDB_model_num 1405,4,[Delta, RunLength, IntegerPacking, ByteArray] vs 1405,3,[RunLength, IntegerPacking, ByteArray] -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.04 s - in org.rcsb.cif.FootprintTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.146 s - in org.rcsb.cif.FootprintTest [INFO] Running org.rcsb.cif.IntegrationTest -[WARNING] Tests run: 14, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 1.066 s - in org.rcsb.cif.IntegrationTest +[WARNING] Tests run: 14, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 2.254 s - in org.rcsb.cif.IntegrationTest [INFO] Running org.rcsb.cif.WriterTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.554 s - in org.rcsb.cif.WriterTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.345 s - in org.rcsb.cif.WriterTest [INFO] Running org.rcsb.cif.NonMmcifFormatTest database_code_depnum_ccdc_archive 1 database_code_CSD 1 @@ -1701,35 +1737,35 @@ atom_site_fract_x 30 atom_site_fract_y 30 atom_site_fract_z 30 -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 s - in org.rcsb.cif.NonMmcifFormatTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.066 s - in org.rcsb.cif.NonMmcifFormatTest [INFO] Running org.rcsb.cif.CaseSensitivityTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 s - in org.rcsb.cif.CaseSensitivityTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 s - in org.rcsb.cif.CaseSensitivityTest [INFO] Running org.rcsb.cif.SchemaValidationTest observed exception as expected: org.rcsb.cif.SchemaMismatchException: CIF_CORE schema should contain exclusively flat column names - format: category_name_column_name observed exception as expected: org.rcsb.cif.SchemaMismatchException: MMCIF schema should not contain flat column names - format: category_name.column_name observed exception as expected: org.rcsb.cif.EmptyColumnException: anonymous column is undefined observed exception as expected: org.rcsb.cif.EmptyColumnException: column length_a is undefined -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.084 s - in org.rcsb.cif.SchemaValidationTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.151 s - in org.rcsb.cif.SchemaValidationTest [INFO] Running org.rcsb.cif.binary.codec.IntegerPackingCodecTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.binary.codec.IntegerPackingCodecTest [INFO] Running org.rcsb.cif.binary.codec.StringArrayCodecTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.binary.codec.StringArrayCodecTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.binary.codec.StringArrayCodecTest [INFO] Running org.rcsb.cif.binary.codec.MessagePackCodecTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in org.rcsb.cif.binary.codec.MessagePackCodecTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 s - in org.rcsb.cif.binary.codec.MessagePackCodecTest [INFO] Running org.rcsb.cif.binary.codec.RunLengthCodecTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.binary.codec.RunLengthCodecTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.rcsb.cif.binary.codec.RunLengthCodecTest [INFO] Running org.rcsb.cif.binary.codec.FixedPointCodecTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.binary.codec.FixedPointCodecTest [INFO] Running org.rcsb.cif.binary.codec.ByteArrayCodecTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.binary.codec.ByteArrayCodecTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in org.rcsb.cif.binary.codec.ByteArrayCodecTest [INFO] Running org.rcsb.cif.binary.codec.IntervalQuantizationCodecTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.binary.codec.IntervalQuantizationCodecTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.rcsb.cif.binary.codec.IntervalQuantizationCodecTest [INFO] Running org.rcsb.cif.binary.codec.DeltaCodecTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.binary.codec.DeltaCodecTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.rcsb.cif.binary.codec.DeltaCodecTest [INFO] Running org.rcsb.cif.ReaderTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.265 s - in org.rcsb.cif.ReaderTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.4 s - in org.rcsb.cif.ReaderTest [INFO] Running org.rcsb.cif.TestHelper -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.TestHelper +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.TestHelper [INFO] Running org.rcsb.cif.DemoTest [WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0 s - in org.rcsb.cif.DemoTest [INFO] @@ -1740,8 +1776,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 35.798 s -[INFO] Finished at: 2025-11-30T06:08:37-12:00 +[INFO] Total time: 43.342 s +[INFO] Finished at: 2024-10-29T01:50:38+14:00 [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_prep @@ -1765,8 +1801,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 1.035 s -[INFO] Finished at: 2025-11-30T06:08:41-12:00 +[INFO] Total time: 1.263 s +[INFO] Finished at: 2024-10-29T01:50:43+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibciftools-java --base-directory=/build/reproducible-path/ciftools-java-6.0.0 --non-explore Analysing pom.xml... @@ -1799,12 +1835,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/32028/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/32028/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1975475 and its subdirectories -I: Current time: Sun Nov 30 06:08:52 -12 2025 -I: pbuilder-time-stamp: 1764526132 +I: removing directory /srv/workspace/pbuilder/32028 and its subdirectories +I: Current time: Tue Oct 29 01:51:19 +14 2024 +I: pbuilder-time-stamp: 1730116279