Diff of the two buildlogs: -- --- b1/build.log 2025-11-13 15:13:57.668133605 +0000 +++ b2/build.log 2025-11-13 15:19:19.356437738 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 16 09:34:24 -12 2026 -I: pbuilder-time-stamp: 1797456864 +I: Current time: Fri Nov 14 05:14:01 +14 2025 +I: pbuilder-time-stamp: 1763046841 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying pandas-2.2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2984298/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1720529/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 13 15:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1720529/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1720529/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='ac93988ba8764b8a8893f6d9e2a61673' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2984298' - PS1='# ' - PS2='> ' + INVOCATION_ID=3d18a403d5c2463483203f4a1da1912d + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1720529 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.clI6jkDA/pbuilderrc_0o3h --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.clI6jkDA/b1 --logfile b1/build.log augur_24.4.0-3.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.clI6jkDA/pbuilderrc_nt6C --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.clI6jkDA/b2 --logfile b2/build.log augur_24.4.0-3.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2984298/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1720529/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -325,7 +357,7 @@ Get: 178 http://deb.debian.org/debian unstable/main arm64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 python3-zstandard arm64 0.25.0-1 [305 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 vcftools arm64 0.1.17-1 [409 kB] -Fetched 152 MB in 1s (143 MB/s) +Fetched 152 MB in 2s (87.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) @@ -918,8 +950,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Dec 16 21:35:00 UTC 2026. -Universal Time is now: Wed Dec 16 21:35:00 UTC 2026. +Local time is now: Thu Nov 13 15:15:12 UTC 2025. +Universal Time is now: Thu Nov 13 15:15:12 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... @@ -1078,7 +1110,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/augur-24.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../augur_24.4.0-3_source.changes +I: user script /srv/workspace/pbuilder/1720529/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1720529/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/augur-24.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../augur_24.4.0-3_source.changes dpkg-buildpackage: info: source package augur dpkg-buildpackage: info: source version 24.4.0-3 dpkg-buildpackage: info: source distribution unstable @@ -1239,63 +1275,9 @@ copying augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data - debian/rules execute_before_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' -cp -v mypy.ini /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : -'mypy.ini' -> '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini' -cp -v .flake8 /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : -'.flake8' -> '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8' -make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' - dh_auto_test -O--buildsystem=pybuild -I: pybuild base:311: cd /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not (test_mypy or test_flake8)' -============================= test session starts ============================== -platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 -rootdir: /build/reproducible-path/augur-24.4.0 -plugins: mock-3.15.1, typeguard-4.4.4 -collected 351 items / 2 deselected / 349 selected - -tests/dates/test_ambiguous_date.py ............................. [ 8%] -tests/dates/test_dates.py ....... [ 10%] -tests/filter/test_relative_dates.py ................ [ 14%] -tests/filter/test_subsample.py ................ [ 19%] -tests/io/test_file.py ............. [ 23%] -tests/io/test_metadata.py .......................................... [ 35%] -tests/io/test_sequences.py .................... [ 40%] -tests/io/test_shell_command_runner.py .......... [ 43%] -tests/io/test_strains.py . [ 44%] -tests/io/test_vcf.py ....... [ 46%] -tests/test_align.py ............................................... [ 59%] -tests/test_ancestral.py ... [ 60%] -tests/test_clades.py ......... [ 63%] -tests/test_frequencies.py ........................ [ 69%] -tests/test_mask.py ....................................... [ 81%] -tests/test_parse.py ... [ 81%] -tests/test_schemas.py .......... [ 84%] -tests/test_titer_models.py . [ 85%] -tests/test_translate.py .. [ 85%] -tests/test_utils.py .......... [ 88%] -tests/test_validate.py ................... [ 93%] -tests/test_validate_export.py .. [ 94%] -tests/util_support/test_color_parser.py .... [ 95%] -tests/util_support/test_node_data.py ... [ 96%] -tests/util_support/test_node_data_file.py ...... [ 98%] -tests/util_support/test_node_data_reader.py ...... [100%] - -=============================== warnings summary =============================== -.pybuild/cpython3_3.13/build/tests/test_validate.py: 10 warnings -.pybuild/cpython3_3.13/build/tests/util_support/test_node_data_file.py: 2 warnings - /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py:65: DeprecationWarning: Accessing Draft6Validator.resolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. - schema_validator.resolver.resolve_remote = resolve_remote - --- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -=============== 349 passed, 2 deselected, 12 warnings in 11.15s ================ - debian/rules execute_after_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' -rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini && : -removed '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini' -rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8 && : -removed '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8' -make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' +dh: command-omitted: The call to "debian/rules execute_before_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" +dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" +dh: command-omitted: The call to "debian/rules execute_after_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1333,45 +1315,7 @@ running install_lib creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v1.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequencies.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titer_model.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titers.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequency_estimators.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/lbi.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/sequence_traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/clades.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/reconstruct_sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/translate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v2.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/ancestral.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/refine.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/tree.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/align.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/mask.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/index.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/argparse_.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate_export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__version__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/types.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/titlecase.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/passthru.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/normalize_strings.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates_directives.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate @@ -1379,8 +1323,6 @@ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data @@ -1395,21 +1337,10 @@ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/ambiguous_date.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/subsample.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/_run.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/include_exclude_rules.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter @@ -1418,22 +1349,9 @@ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/beast.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/shell_command_runner.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/vcf.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/strains.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/print.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/metadata.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/json.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io @@ -1444,21 +1362,10 @@ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/concat.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_reader.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser_line.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support @@ -1615,12 +1522,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1720529/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1720529/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2984298 and its subdirectories -I: Current time: Wed Dec 16 09:36:54 -12 2026 -I: pbuilder-time-stamp: 1797457014 +I: removing directory /srv/workspace/pbuilder/1720529 and its subdirectories +I: Current time: Fri Nov 14 05:19:15 +14 2025 +I: pbuilder-time-stamp: 1763047155