Diff of the two buildlogs:
--
--- b1/build.log 2025-03-16 19:06:21.384248404 +0000
+++ b2/build.log 2025-03-16 19:20:01.791254820 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Sat Apr 18 13:24:15 -12 2026
-I: pbuilder-time-stamp: 1776561855
+I: Current time: Mon Mar 17 09:06:25 +14 2025
+I: pbuilder-time-stamp: 1742151985
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
@@ -24,52 +24,84 @@
dpkg-source: info: applying use-system-packages.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/1015225/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/3938919/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos1-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Mar 16 19:06 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/3938919/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/3938919/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='amd64'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
- DISTRIBUTION='unstable'
- HOME='/root'
- HOST_ARCH='amd64'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=amd64
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
+ DIRSTACK=()
+ DISTRIBUTION=unstable
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=x86_64
+ HOST_ARCH=amd64
IFS='
'
- INVOCATION_ID='e2c71ab28f5e499cbd9a0ee75eb25c03'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='1015225'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=352a3237d8ac4ec9adde63bb4d6b7967
+ LANG=C
+ LANGUAGE=et_EE:et
+ LC_ALL=C
+ MACHTYPE=x86_64-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=3938919
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vU4k8CRT/pbuilderrc_qBil --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vU4k8CRT/b1 --logfile b1/build.log voronota_1.29.4307+ds-1.dsc'
- SUDO_GID='110'
- SUDO_UID='105'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://213.165.73.152:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vU4k8CRT/pbuilderrc_yug7 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vU4k8CRT/b2 --logfile b2/build.log voronota_1.29.4307+ds-1.dsc'
+ SUDO_GID=110
+ SUDO_UID=105
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://46.16.76.132:3128
I: uname -a
- Linux ionos5-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/1015225/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/3938919/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -171,7 +203,7 @@
Get: 60 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 61 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB]
Get: 62 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB]
-Fetched 41.3 MB in 7s (5522 kB/s)
+Fetched 41.3 MB in 1s (34.7 MB/s)
Preconfiguring packages ...
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19784 files and directories currently installed.)
@@ -434,7 +466,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/voronota-1.29.4307+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../voronota_1.29.4307+ds-1_source.changes
+I: user script /srv/workspace/pbuilder/3938919/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/3938919/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/voronota-1.29.4307+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../voronota_1.29.4307+ds-1_source.changes
dpkg-buildpackage: info: source package voronota
dpkg-buildpackage: info: source version 1.29.4307+ds-1
dpkg-buildpackage: info: source distribution unstable
@@ -471,8 +507,8 @@
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
--- Configuring done (0.7s)
--- Generating done (0.0s)
+-- Configuring done (3.9s)
+-- Generating done (0.1s)
CMake Warning:
Manually-specified variables were not used by the project:
@@ -488,7 +524,7 @@
-- Build files have been written to: /build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu
dh_auto_build
- cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1
+ cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/voronota-1.29.4307+ds -B/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks
@@ -501,108 +537,53 @@
make -f CMakeFiles/voronota.dir/build.make CMakeFiles/voronota.dir/build
make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu'
[ 2%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o
-[ 4%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o
-[ 6%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_compare_files_as_sets.cpp
-[ 8%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices_in_parallel.cpp
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_contacts.cpp
-[ 10%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o
-[ 15%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o
-[ 15%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o
-[ 17%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o
-[ 19%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o
-[ 21%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o
-[ 23%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o
+[ 4%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o
+[ 6%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_mock_solvent.cpp
+[ 8%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_path_centralities.cpp
-[ 30%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o
-[ 32%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o
-[ 32%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_compare_contacts.cpp
-[ 32%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o
-[ 34%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_polygon_triangulation.cpp
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices_in_parallel.cpp
+[ 10%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o
+[ 13%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices.cpp
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_compare_contacts.cpp
+[ 15%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o
+[ 17%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_compare_files_as_sets.cpp
+[ 19%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_blank.cpp
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_hypercut.cpp
+[ 21%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o
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-[ 36%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o
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/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_draw_contacts.cpp
-[ 39%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o
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-[ 45%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o
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-[ 45%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o
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-[ 50%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o
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-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_global_energy_by_cuts.cpp
-[ 73%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o
-[ 76%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_potential.cpp
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-[ 80%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o
-[ 80%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_quality.cpp
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_scores.cpp
-[ 82%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_simulate_potential_for_membrane_proteins.cpp
-[ 89%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o
-[ 86%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_split_atoms_file.cpp
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_contacts.cpp
-[ 89%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_contact_environments.cpp
-[ 91%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_points.cpp
-[ 93%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_write_balls_to_atoms_file.cpp
-[ 95%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_write_qa_scores_in_casp_format.cpp
-[ 97%] Building CXX object CMakeFiles/voronota.dir/src/voronota.cpp.o
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/voronota.cpp.o -MF CMakeFiles/voronota.dir/src/voronota.cpp.o.d -o CMakeFiles/voronota.dir/src/voronota.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp
-/build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp:59:22: warning: 'template<class _Arg, class _Result> class std::pointer_to_unary_function' is deprecated [-Wdeprecated-declarations]
- 59 | typedef std::pointer_to_unary_function<const voronota::auxiliaries::ProgramOptionsHandler&, void> FunctionPtr;
- | ^~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/string:49,
- from /usr/include/c++/14/bits/locale_classes.h:40,
- from /usr/include/c++/14/bits/ios_base.h:41,
- from /usr/include/c++/14/ios:44,
- from /usr/include/c++/14/ostream:40,
- from /usr/include/c++/14/iostream:41,
- from /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp:1:
-/usr/include/c++/14/bits/stl_function.h:1102:11: note: declared here
- 1102 | class pointer_to_unary_function : public unary_function<_Arg, _Result>
- | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:63,
from /usr/include/c++/14/set:62,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/search_for_spherical_collisions.h:4,
@@ -664,13 +645,33 @@
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
+[ 54%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_interface_exposure_values.cpp
+[ 56%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_simulating_unfolding.cpp
+[ 58%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_solvation_values.cpp
+[ 60%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_reprint_hbp.cpp
+[ 63%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_rotational_optimization_demo.cpp
+[ 65%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_run_script.cpp
+[ 67%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_energy.cpp
+[ 69%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_energy_stats.cpp
+[ 71%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_global_energy_by_cuts.cpp
+[ 73%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_potential.cpp
In file included from /usr/include/c++/14/string:51,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
- from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices.cpp:1:
+ from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices_in_parallel.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
@@ -728,13 +729,15 @@
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
+[ 76%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_potentials_stats.cpp
In file included from /usr/include/c++/14/string:51,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
- from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices_in_parallel.cpp:1:
+ from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
@@ -765,6 +768,8 @@
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
+[ 78%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_quality.cpp
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
@@ -792,6 +797,12 @@
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
+[ 80%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_scores.cpp
+[ 82%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_simulate_potential_for_membrane_proteins.cpp
+[ 84%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_split_atoms_file.cpp
In file included from /usr/include/c++/14/bits/stl_tree.h:63,
from /usr/include/c++/14/set:62,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/search_for_spherical_collisions.h:4,
@@ -826,6 +837,45 @@
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
+In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
+ inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
+ inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
+ inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
+ inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
+ inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
+ inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
+ inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
+ inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
+ inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
+ inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
+ inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
+/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
+ 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
+ inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
+ inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
+ inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
+ inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
+ inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
+ inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
+ inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
+ inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
+/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
+ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
+ | ^
+[ 86%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_contact_environments.cpp
+[ 89%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_contacts.cpp
+[ 91%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_points.cpp
+[ 93%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_write_balls_to_atoms_file.cpp
+[ 95%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_write_qa_scores_in_casp_format.cpp
+[ 97%] Building CXX object CMakeFiles/voronota.dir/src/voronota.cpp.o
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/voronota.cpp.o -MF CMakeFiles/voronota.dir/src/voronota.cpp.o.d -o CMakeFiles/voronota.dir/src/voronota.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp
In file included from /usr/include/c++/14/string:51,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
@@ -863,6 +913,22 @@
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
+/build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp:59:22: warning: 'template<class _Arg, class _Result> class std::pointer_to_unary_function' is deprecated [-Wdeprecated-declarations]
+ 59 | typedef std::pointer_to_unary_function<const voronota::auxiliaries::ProgramOptionsHandler&, void> FunctionPtr;
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/14/string:49,
+ from /usr/include/c++/14/bits/locale_classes.h:40,
+ from /usr/include/c++/14/bits/ios_base.h:41,
+ from /usr/include/c++/14/ios:44,
+ from /usr/include/c++/14/ostream:40,
+ from /usr/include/c++/14/iostream:41,
+ from /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp:1:
+/usr/include/c++/14/bits/stl_function.h:1102:11: note: declared here
+ 1102 | class pointer_to_unary_function : public unary_function<_Arg, _Result>
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/14/vector:62,
+ from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/spheres_boundary_construction.h:4,
+ from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_ses.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
@@ -872,21 +938,24 @@
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
- inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
- inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
- inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
+ inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
+ inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
+ inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33,
+ from /usr/include/c++/14/bits/allocator.h:46,
+ from /usr/include/c++/14/vector:63:
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
- inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
- inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
- inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
+ inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
+ inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
+ inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
@@ -917,39 +986,6 @@
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
-In file included from /usr/include/c++/14/vector:62,
- from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/spheres_boundary_construction.h:4,
- from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_ses.cpp:1:
-In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
- inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
- inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
- inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
- inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
- inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
- inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
- inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
- inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
- inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
- inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
- inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
-/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
- 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33,
- from /usr/include/c++/14/bits/allocator.h:46,
- from /usr/include/c++/14/vector:63:
-In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
- inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
- inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
- inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
- inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
- inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
- inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
- inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
- inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
-/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
- 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
- | ^
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
@@ -1113,7 +1149,7 @@
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/voronota/
- cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/voronota-1.29.4307\+ds/debian/voronota AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+ cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/voronota-1.29.4307\+ds/debian/voronota AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/voronota-1.29.4307+ds -B/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
@@ -1156,8 +1192,8 @@
dh_gencontrol
dh_md5sums
dh_builddeb
-dpkg-deb: building package 'voronota-dbgsym' in '../voronota-dbgsym_1.29.4307+ds-1_amd64.deb'.
dpkg-deb: building package 'voronota' in '../voronota_1.29.4307+ds-1_amd64.deb'.
+dpkg-deb: building package 'voronota-dbgsym' in '../voronota-dbgsym_1.29.4307+ds-1_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../voronota_1.29.4307+ds-1_amd64.buildinfo
dpkg-genchanges --build=binary -O../voronota_1.29.4307+ds-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -1165,12 +1201,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/3938919/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/3938919/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/1015225 and its subdirectories
-I: Current time: Sat Apr 18 13:29:20 -12 2026
-I: pbuilder-time-stamp: 1776562160
+I: removing directory /srv/workspace/pbuilder/3938919 and its subdirectories
+I: Current time: Mon Mar 17 09:20:00 +14 2025
+I: pbuilder-time-stamp: 1742152800