Diff of the two buildlogs: -- --- b1/build.log 2025-11-08 11:54:52.683096329 +0000 +++ b2/build.log 2025-11-08 11:59:51.947448152 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 7 23:49:50 -12 2025 -I: pbuilder-time-stamp: 1762602590 +I: Current time: Sat Dec 12 08:17:59 +14 2026 +I: pbuilder-time-stamp: 1797013079 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -42,53 +42,85 @@ dpkg-source: info: applying extending_Function_in_jung.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1554762/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3219644/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 11 18:18 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3219644/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3219644/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a63fb05fbdc1493fad8d5a438b2dce1d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1554762' - PS1='# ' - PS2='> ' + INVOCATION_ID=7978910510eb487aa9a1c9c3fdf41250 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3219644 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8biQSGbi/pbuilderrc_COSR --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8biQSGbi/b1 --logfile b1/build.log trinityrnaseq_2.15.2+dfsg-2.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8biQSGbi/pbuilderrc_ed5w --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8biQSGbi/b2 --logfile b2/build.log trinityrnaseq_2.15.2+dfsg-2.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1554762/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3219644/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -452,7 +484,7 @@ Get: 308 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.22.1+ds2-1 [1807 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 libjung-free-java all 2.1.1-3 [1484 kB] -Fetched 273 MB in 37s (7399 kB/s) +Fetched 273 MB in 7s (38.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) @@ -1478,8 +1510,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Nov 8 11:52:27 UTC 2025. -Universal Time is now: Sat Nov 8 11:52:27 UTC 2025. +Local time is now: Fri Dec 11 18:20:47 UTC 2026. +Universal Time is now: Fri Dec 11 18:20:47 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -1942,7 +1974,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../trinityrnaseq_2.15.2+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/3219644/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3219644/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../trinityrnaseq_2.15.2+dfsg-2_source.changes dpkg-buildpackage: info: source package trinityrnaseq dpkg-buildpackage: info: source version 2.15.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1957,7 +1993,7 @@ --sourcedirectory=${target} --builddirectory=${target}_build; done for target in trinity-plugins/slclust trinity-plugins/scaffold_iworm_contigs trinity-plugins/bamsifter; do dh_auto_clean \ --sourcedirectory=${target}; done - cd trinity-plugins/slclust && make -j40 clean + cd trinity-plugins/slclust && make -j42 clean make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ @@ -1968,7 +2004,7 @@ ../bin/slclust make[3]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/slclust/src' make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/slclust' - cd trinity-plugins/scaffold_iworm_contigs && make -j40 clean + cd trinity-plugins/scaffold_iworm_contigs && make -j42 clean make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/scaffold_iworm_contigs' rm -f scaffold_iworm_contigs make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/scaffold_iworm_contigs' @@ -2010,12 +2046,12 @@ make[3]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/slclust' cd COLLECTL && rm -rf "collectl-4.1.0" && rm -f collectl cd htslib && /usr/bin/make clean -/bin/sh: 1: cd: can't cd to htslib -make[2]: *** [Makefile:54: clean] Error 2 +/bin/sh: line 1: cd: htslib: No such file or directory +make[2]: *** [Makefile:54: clean] Error 1 make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins' make[1]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg' jh_clean -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" dh_clean debian/rules binary dh binary --with javahelper @@ -2030,7 +2066,7 @@ rm -f Chrysalis/Makefile for target in Inchworm Chrysalis; do dh_auto_configure \ --sourcedirectory=${target} --builddirectory=${target}_build -- -DCMAKE_POLICY_VERSION_MINIMUM=3.5 ; done - cd Inchworm_build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_POLICY_VERSION_MINIMUM=3.5 ../Inchworm + cd Inchworm_build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DCMAKE_POLICY_VERSION_MINIMUM=3.5 ../Inchworm CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. @@ -2053,11 +2089,12 @@ -- Detecting CXX compile features -- Detecting CXX compile features - done -- system: Linux --- Configuring done (0.4s) +-- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY @@ -2070,7 +2107,7 @@ -- Build files have been written to: /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build - cd Chrysalis_build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_POLICY_VERSION_MINIMUM=3.5 ../Chrysalis + cd Chrysalis_build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DCMAKE_POLICY_VERSION_MINIMUM=3.5 ../Chrysalis CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. @@ -2093,11 +2130,12 @@ -- Detecting CXX compile features -- Detecting CXX compile features - done -- system: Linux --- Configuring done (0.4s) +-- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY @@ -2116,7 +2154,7 @@ make[1]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg' for target in Inchworm Chrysalis; do dh_auto_build \ --sourcedirectory=${target} --builddirectory=${target}_build; done - cd Inchworm_build && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd Inchworm_build && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' /usr/bin/cmake -S/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm -B/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build/CMakeFiles /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build//CMakeFiles/progress.marks @@ -2126,70 +2164,70 @@ make -f CMakeFiles/FastaToDeBruijn.dir/build.make CMakeFiles/FastaToDeBruijn.dir/depend make -f CMakeFiles/fastaToKmerCoverageStats.dir/build.make CMakeFiles/fastaToKmerCoverageStats.dir/depend make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' -cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build/CMakeFiles/inchworm.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build/CMakeFiles/FastaToDeBruijn.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' +cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build/CMakeFiles/inchworm.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build/CMakeFiles/fastaToKmerCoverageStats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' -make -f CMakeFiles/inchworm.dir/build.make CMakeFiles/inchworm.dir/build -make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' +make -f CMakeFiles/FastaToDeBruijn.dir/build.make CMakeFiles/FastaToDeBruijn.dir/build make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' -make -f CMakeFiles/fastaToKmerCoverageStats.dir/build.make CMakeFiles/fastaToKmerCoverageStats.dir/build make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' -make -f CMakeFiles/FastaToDeBruijn.dir/build.make CMakeFiles/FastaToDeBruijn.dir/build +make -f CMakeFiles/fastaToKmerCoverageStats.dir/build.make CMakeFiles/fastaToKmerCoverageStats.dir/build make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' +make -f CMakeFiles/inchworm.dir/build.make CMakeFiles/inchworm.dir/build make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' -[ 3%] Building CXX object CMakeFiles/inchworm.dir/src/Fasta_entry.cpp.o -[ 7%] Building CXX object CMakeFiles/inchworm.dir/src/IRKE.cpp.o -[ 17%] Building CXX object CMakeFiles/inchworm.dir/src/string_util.cpp.o -[ 17%] Building CXX object CMakeFiles/inchworm.dir/src/KmerCounter.cpp.o -[ 17%] Building CXX object CMakeFiles/inchworm.dir/src/sequenceUtil.cpp.o -[ 21%] Building CXX object CMakeFiles/inchworm.dir/src/IRKE_run.cpp.o -[ 25%] Building CXX object CMakeFiles/inchworm.dir/src/argProcessor.cpp.o -[ 28%] Building CXX object CMakeFiles/FastaToDeBruijn.dir/src/FastaToDeBruijn.cpp.o -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/inchworm.dir/src/Fasta_entry.cpp.o -MF CMakeFiles/inchworm.dir/src/Fasta_entry.cpp.o.d -o CMakeFiles/inchworm.dir/src/Fasta_entry.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/Fasta_entry.cpp -[ 35%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/Fasta_reader.cpp.o -[ 35%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/Fasta_entry.cpp.o -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/inchworm.dir/src/IRKE.cpp.o -MF CMakeFiles/inchworm.dir/src/IRKE.cpp.o.d -o CMakeFiles/inchworm.dir/src/IRKE.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/IRKE.cpp -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/inchworm.dir/src/string_util.cpp.o -MF CMakeFiles/inchworm.dir/src/string_util.cpp.o.d -o CMakeFiles/inchworm.dir/src/string_util.cpp.o -c 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-ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/inchworm.dir/src/Fasta_entry.cpp.o -MF CMakeFiles/inchworm.dir/src/Fasta_entry.cpp.o.d -o CMakeFiles/inchworm.dir/src/Fasta_entry.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/Fasta_entry.cpp +[ 71%] Building CXX object CMakeFiles/inchworm.dir/src/KmerCounter.cpp.o +[ 71%] Building CXX object CMakeFiles/inchworm.dir/src/IRKE.cpp.o +[ 71%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/sequenceUtil.cpp.o +[ 71%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/Fasta_entry.cpp.o +[ 75%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/stacktrace.cpp.o +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/fastaToKmerCoverageStats.dir/src/string_util.cpp.o -MF CMakeFiles/fastaToKmerCoverageStats.dir/src/string_util.cpp.o.d -o CMakeFiles/fastaToKmerCoverageStats.dir/src/string_util.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/string_util.cpp +[ 78%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/KmerCounter.cpp.o +[ 82%] Building CXX object CMakeFiles/inchworm.dir/src/string_util.cpp.o +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/FastaToDeBruijn.dir/src/argProcessor.cpp.o -MF CMakeFiles/FastaToDeBruijn.dir/src/argProcessor.cpp.o.d -o CMakeFiles/FastaToDeBruijn.dir/src/argProcessor.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/argProcessor.cpp +[ 85%] Building CXX object CMakeFiles/inchworm.dir/src/Fasta_reader.cpp.o +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/inchworm.dir/src/KmerCounter.cpp.o -MF CMakeFiles/inchworm.dir/src/KmerCounter.cpp.o.d -o CMakeFiles/inchworm.dir/src/KmerCounter.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/KmerCounter.cpp +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/inchworm.dir/src/IRKE.cpp.o -MF CMakeFiles/inchworm.dir/src/IRKE.cpp.o.d -o CMakeFiles/inchworm.dir/src/IRKE.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/IRKE.cpp +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/fastaToKmerCoverageStats.dir/src/sequenceUtil.cpp.o -MF CMakeFiles/fastaToKmerCoverageStats.dir/src/sequenceUtil.cpp.o.d -o CMakeFiles/fastaToKmerCoverageStats.dir/src/sequenceUtil.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/sequenceUtil.cpp +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic 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-D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/fastaToKmerCoverageStats.dir/src/stacktrace.cpp.o -MF CMakeFiles/fastaToKmerCoverageStats.dir/src/stacktrace.cpp.o.d -o CMakeFiles/fastaToKmerCoverageStats.dir/src/stacktrace.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/stacktrace.cpp -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/FastaToDeBruijn.dir/src/Fasta_entry.cpp.o -MF CMakeFiles/FastaToDeBruijn.dir/src/Fasta_entry.cpp.o.d -o CMakeFiles/FastaToDeBruijn.dir/src/Fasta_entry.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/Fasta_entry.cpp -[ 89%] Building CXX object CMakeFiles/FastaToDeBruijn.dir/src/stacktrace.cpp.o -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/FastaToDeBruijn.dir/src/string_util.cpp.o -MF CMakeFiles/FastaToDeBruijn.dir/src/string_util.cpp.o.d -o CMakeFiles/FastaToDeBruijn.dir/src/string_util.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/string_util.cpp -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/FastaToDeBruijn.dir/src/sequenceUtil.cpp.o -MF CMakeFiles/FastaToDeBruijn.dir/src/sequenceUtil.cpp.o.d -o CMakeFiles/FastaToDeBruijn.dir/src/sequenceUtil.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/sequenceUtil.cpp -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/FastaToDeBruijn.dir/src/DeBruijnGraph.cpp.o -MF CMakeFiles/FastaToDeBruijn.dir/src/DeBruijnGraph.cpp.o.d -o CMakeFiles/FastaToDeBruijn.dir/src/DeBruijnGraph.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/DeBruijnGraph.cpp -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/FastaToDeBruijn.dir/src/stacktrace.cpp.o -MF CMakeFiles/FastaToDeBruijn.dir/src/stacktrace.cpp.o.d -o CMakeFiles/FastaToDeBruijn.dir/src/stacktrace.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/stacktrace.cpp +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/inchworm.dir/src/Fasta_reader.cpp.o -MF CMakeFiles/inchworm.dir/src/Fasta_reader.cpp.o.d -o CMakeFiles/inchworm.dir/src/Fasta_reader.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/Fasta_reader.cpp +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/fastaToKmerCoverageStats.dir/src/KmerCounter.cpp.o -MF CMakeFiles/fastaToKmerCoverageStats.dir/src/KmerCounter.cpp.o.d -o CMakeFiles/fastaToKmerCoverageStats.dir/src/KmerCounter.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/KmerCounter.cpp +[ 89%] Building CXX object CMakeFiles/inchworm.dir/src/argProcessor.cpp.o +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -MD -MT CMakeFiles/inchworm.dir/src/argProcessor.cpp.o -MF CMakeFiles/inchworm.dir/src/argProcessor.cpp.o.d -o CMakeFiles/inchworm.dir/src/argProcessor.cpp.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/argProcessor.cpp In file included from /usr/include/c++/15/ext/hash_map:60, from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/KmerCounter.hpp:53, from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/KmerCounter.cpp:1: @@ -2198,7 +2236,8 @@ | ^~~~~~~ In file included from /usr/include/c++/15/ext/hash_map:60, from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/KmerCounter.hpp:53, - from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/KmerCounter.cpp:1: + from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/IRKE.hpp:7, + from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/IRKE_run.cpp:11: /usr/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ @@ -2211,8 +2250,7 @@ | ^~~~~~~ In file included from /usr/include/c++/15/ext/hash_map:60, from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/KmerCounter.hpp:53, - from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/IRKE.hpp:7, - from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/IRKE_run.cpp:11: + from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/KmerCounter.cpp:1: /usr/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ @@ -2234,10 +2272,6 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/DeBruijnGraph.cpp:494:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 494 | for (int i=0; i < next_kmers.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/FastaToDeBruijn.cpp: In function 'void createGraphPerRecord(std::vector >, int, bool, ArgProcessor)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/FastaToDeBruijn.cpp:215:39: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 215 | if (seq_region.size() < kmer_length) { continue; } // can be encountered in jaccard-clip mode (rarely) - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/DeBruijnGraph.cpp: In member function 'std::string DeBruijnGraph::toChrysalisFormat(int, bool)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/DeBruijnGraph.cpp:725:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 725 | for (int i = 0; i < collected_kmers.size(); i++) { @@ -2246,6 +2280,10 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/fastaToKmerCoverageStats.cpp:231:18: warning: unused variable 'kmer_length' [-Wunused-variable] 231 | unsigned int kmer_length = kcounter.get_kmer_length(); | ^~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/FastaToDeBruijn.cpp: In function 'void createGraphPerRecord(std::vector >, int, bool, ArgProcessor)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/FastaToDeBruijn.cpp:215:39: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 215 | if (seq_region.size() < kmer_length) { continue; } // can be encountered in jaccard-clip mode (rarely) + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm/src/fastaToKmerCoverageStats.cpp:250:9: warning: 'end' may be used uninitialized [-Wmaybe-uninitialized] 250 | #pragma omp parallel private (myTid) | ^~~ @@ -2270,7 +2308,7 @@ make[3]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' - cd Chrysalis_build && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd Chrysalis_build && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' /usr/bin/cmake -S/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -B/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build/CMakeFiles /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build//CMakeFiles/progress.marks @@ -2283,135 +2321,123 @@ make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build/CMakeFiles/Chrysalis.dir/DependInfo.cmake "--color=" make -f CMakeFiles/BubbleUpClustering.dir/build.make CMakeFiles/BubbleUpClustering.dir/depend -make -f CMakeFiles/CreateIwormFastaBundle.dir/build.make CMakeFiles/CreateIwormFastaBundle.dir/depend make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build/CMakeFiles/GraphFromFasta.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' -cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build/CMakeFiles/QuantifyGraph.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/CreateIwormFastaBundle.dir/build.make CMakeFiles/CreateIwormFastaBundle.dir/depend make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build/CMakeFiles/ReadsToTranscripts.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' +cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build/CMakeFiles/QuantifyGraph.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build/CMakeFiles/BubbleUpClustering.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' cd /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build/CMakeFiles/CreateIwormFastaBundle.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' -make -f CMakeFiles/Chrysalis.dir/build.make CMakeFiles/Chrysalis.dir/build -make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' make -f CMakeFiles/ReadsToTranscripts.dir/build.make CMakeFiles/ReadsToTranscripts.dir/build -make -f CMakeFiles/BubbleUpClustering.dir/build.make CMakeFiles/BubbleUpClustering.dir/build -make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' -make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' make -f CMakeFiles/QuantifyGraph.dir/build.make 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CMakeFiles/QuantifyGraph.dir/analysis/sequenceUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o -MF CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o.d -o CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DNAVector.cc [ 48%] Building CXX object CMakeFiles/Chrysalis.dir/base/FileParser.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. 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CMakeFiles/ReadsToTranscripts.dir/analysis/ReadsToTranscripts.cc.o -MF CMakeFiles/ReadsToTranscripts.dir/analysis/ReadsToTranscripts.cc.o.d -o CMakeFiles/ReadsToTranscripts.dir/analysis/ReadsToTranscripts.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/ReadsToTranscripts.cc -[ 52%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/base/ErrorHandling.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/ReadsToTranscripts.dir/base/ErrorHandling.cc.o -MF CMakeFiles/ReadsToTranscripts.dir/base/ErrorHandling.cc.o.d -o CMakeFiles/ReadsToTranscripts.dir/base/ErrorHandling.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc -[ 55%] Building CXX object CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/analysis/AACodons.cc.o -MF CMakeFiles/GraphFromFasta.dir/analysis/AACodons.cc.o.d -o CMakeFiles/GraphFromFasta.dir/analysis/AACodons.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/AACodons.cc +[ 51%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/util/mutil.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/CreateIwormFastaBundle.dir/analysis/AACodons.cc.o -MF CMakeFiles/CreateIwormFastaBundle.dir/analysis/AACodons.cc.o.d -o CMakeFiles/CreateIwormFastaBundle.dir/analysis/AACodons.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/AACodons.cc [ 55%] Building CXX object CMakeFiles/Chrysalis.dir/base/StringUtil.cc.o +[ 55%] Building CXX object CMakeFiles/BubbleUpClustering.dir/aligns/KmerAlignCore.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/ReadsToTranscripts.dir/util/mutil.cc.o -MF CMakeFiles/ReadsToTranscripts.dir/util/mutil.cc.o.d -o 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CMakeFiles/ReadsToTranscripts.dir/analysis/stacktrace.cc.o -MF CMakeFiles/ReadsToTranscripts.dir/analysis/stacktrace.cc.o.d -o CMakeFiles/ReadsToTranscripts.dir/analysis/stacktrace.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/stacktrace.cc -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o -MF CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o.d -o CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DNAVector.cc -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/QuantifyGraph.dir/analysis/AACodons.cc.o -MF CMakeFiles/QuantifyGraph.dir/analysis/AACodons.cc.o.d -o CMakeFiles/QuantifyGraph.dir/analysis/AACodons.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/AACodons.cc -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~^~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~~~~~~~^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~^~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~~~~~~~^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~^~~~ +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/QuantifyGraph.dir/analysis/QuantifyGraph.cc.o -MF CMakeFiles/QuantifyGraph.dir/analysis/QuantifyGraph.cc.o.d -o CMakeFiles/QuantifyGraph.dir/analysis/QuantifyGraph.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/QuantifyGraph.cc +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/Chrysalis.dir/analysis/TranscriptomeGraph.cc.o -MF CMakeFiles/Chrysalis.dir/analysis/TranscriptomeGraph.cc.o.d -o CMakeFiles/Chrysalis.dir/analysis/TranscriptomeGraph.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc +[ 58%] Building CXX object CMakeFiles/Chrysalis.dir/base/ErrorHandling.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/aligns/KmerAlignCore.cc.o -MF CMakeFiles/BubbleUpClustering.dir/aligns/KmerAlignCore.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/aligns/KmerAlignCore.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/Chrysalis.dir/base/ErrorHandling.cc.o -MF CMakeFiles/Chrysalis.dir/base/ErrorHandling.cc.o.d -o CMakeFiles/Chrysalis.dir/base/ErrorHandling.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/QuantifyGraph.dir/analysis/stacktrace.cc.o -MF CMakeFiles/QuantifyGraph.dir/analysis/stacktrace.cc.o.d -o CMakeFiles/QuantifyGraph.dir/analysis/stacktrace.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/stacktrace.cc +[ 60%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/GraphFromFasta.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/analysis/GraphFromFasta.cc.o -MF CMakeFiles/GraphFromFasta.dir/analysis/GraphFromFasta.cc.o.d -o CMakeFiles/GraphFromFasta.dir/analysis/GraphFromFasta.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] + 50 | bool StringParser::IsString(int index) + | ~~~~^~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { @@ -2436,6 +2462,16 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:526:85: warning: unused parameter 'elSize' [-Wunused-parameter] 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) | ~~~~~^~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~^~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~~~~~~~^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~^~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, bool)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:738:53: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 738 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, bool bLineFeed) @@ -2448,39 +2484,41 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:787:80: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 787 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, const MCL_TCHAR * szText2, bool bLineFeed) | ~~~~~^~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MCLSetUTF8Encode(bool)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1288:39: warning: unused parameter 'b' [-Wunused-parameter] - 1288 | MDLLEXPORT void MCLSetUTF8Encode(bool b) - | ~~~~~^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'bool AddUTF8Sig(CMString&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1688:16: warning: unused variable 'p' [-Wunused-variable] - 1688 | const char * p = (const char*)string; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~^~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~~~~~~~^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] - 50 | bool StringParser::IsString(int index) - | ~~~~^~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] - 50 | bool StringParser::IsString(int index) - | ~~~~^~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] + 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { + | ^~~~~~~ ~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:303:51: warning: unused parameter 'pData' [-Wunused-parameter] + 303 | bool CMAsciiReadFileStream::ReadSimpleType(void * pData, long lenInBytes) + | ~~~~~~~^~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:303:63: warning: unused parameter 'lenInBytes' [-Wunused-parameter] + 303 | bool CMAsciiReadFileStream::ReadSimpleType(void * pData, long lenInBytes) + | ~~~~~^~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadString(CMString&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:436:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] + 436 | if (fscanf(m_pFile, pData, len, m_pFile) == EOF) { + | ^~~~~~~ ~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiWriteFileStream::WriteBlob(const void*, long int, long int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:526:53: warning: unused parameter 'pData' [-Wunused-parameter] + 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) + | ~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:526:65: warning: unused parameter 'lenInElements' [-Wunused-parameter] + 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) + | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const vecDNAVector&, const vecNumVector&, int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:79:49: warning: unused variable 't' [-Wunused-variable] 79 | KmerAlignCoreRecordStoreTable & t = m_table; // not used? | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:526:85: warning: unused parameter 'elSize' [-Wunused-parameter] + 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) + | ~~~~~^~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:49:9: warning: unused variable 'i' [-Wunused-variable] 49 | int i, j, k; | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MCLSetUTF8Encode(bool)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1288:39: warning: unused parameter 'b' [-Wunused-parameter] + 1288 | MDLLEXPORT void MCLSetUTF8Encode(bool b) + | ~~~~~^ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const DNAVector&, int, int, bool)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:9: warning: unused variable 'i' [-Wunused-variable] 128 | int i, j, k; @@ -2502,72 +2540,102 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:12: warning: unused variable 'j' [-Wunused-variable] 159 | int i, j; | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, bool)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:738:53: warning: unused parameter 'bLineFeed' [-Wunused-parameter] + 738 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, bool bLineFeed) + | ~~~~~^~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, long int, bool)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:761:63: warning: unused parameter 'bLineFeed' [-Wunused-parameter] + 761 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, long val, bool bLineFeed) + | ~~~~~^~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, const MCL_TCHAR*, bool)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:787:80: warning: unused parameter 'bLineFeed' [-Wunused-parameter] + 787 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, const MCL_TCHAR * szText2, bool bLineFeed) + | ~~~~~^~~~~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::MergeSortFilter(svec&, const svec&, const svec&)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:291:9: warning: unused variable 'i' [-Wunused-variable] 291 | int i; | ^ -[ 58%] Building CXX object CMakeFiles/QuantifyGraph.dir/base/ErrorHandling.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/QuantifyGraph.dir/base/ErrorHandling.cc.o -MF CMakeFiles/QuantifyGraph.dir/base/ErrorHandling.cc.o.d -o CMakeFiles/QuantifyGraph.dir/base/ErrorHandling.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const vecDNAVector&, const vecNumVector&, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:79:49: warning: unused variable 't' [-Wunused-variable] - 79 | KmerAlignCoreRecordStoreTable & t = m_table; // not used? - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc: In member function 'long long int KmerSequence::BasesToNumber(const DNAVector&, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc:27:13: warning: unused variable 'i' [-Wunused-variable] - 27 | long long i; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:49:9: warning: unused variable 'i' [-Wunused-variable] - 49 | int i, j, k; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const DNAVector&, int, int, bool)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:9: warning: unused variable 'i' [-Wunused-variable] - 128 | int i, j, k; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:12: warning: unused variable 'j' [-Wunused-variable] - 128 | int i, j, k; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::SortAll()': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:148:9: warning: unused variable 'i' [-Wunused-variable] - 148 | int i, j; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc: In member function 'long long int KmerSequence::BasesToNumber(const DNAVector&, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc:27:13: warning: unused variable 'i' [-Wunused-variable] - 27 | long long i; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'const svec& KmerAlignCore::GetMatchesDirectly(const DNAVector&, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:158:9: warning: unused variable 'size' [-Wunused-variable] - 158 | int size = m_pTrans->GetSize(); - | ^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:9: warning: unused variable 'i' [-Wunused-variable] - 159 | int i, j; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:12: warning: unused variable 'j' [-Wunused-variable] - 159 | int i, j; - | ^ -[ 60%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::MergeSortFilter(svec&, const svec&, const svec&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:291:9: warning: unused variable 'i' [-Wunused-variable] - 291 | int i; +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MCLSetUTF8Encode(bool)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1288:39: warning: unused parameter 'b' [-Wunused-parameter] + 1288 | MDLLEXPORT void MCLSetUTF8Encode(bool b) + | ~~~~~^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'bool AddUTF8Sig(CMString&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1688:16: warning: unused variable 'p' [-Wunused-variable] + 1688 | const char * p = (const char*)string; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'bool AddUTF8Sig(CMString&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1688:16: warning: unused variable 'p' [-Wunused-variable] + 1688 | const char * p = (const char*)string; + | ^ +[ 61%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/KmerTable.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/analysis/KmerTable.cc.o -MF CMakeFiles/GraphFromFasta.dir/analysis/KmerTable.cc.o.d -o CMakeFiles/GraphFromFasta.dir/analysis/KmerTable.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc +[ 62%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/AACodons.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/AACodons.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/AACodons.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/AACodons.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/AACodons.cc +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] + 50 | bool StringParser::IsString(int index) + | ~~~~^~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 46 | for (j=0; j<=d.size()-m_k; j++) { + | ~^~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 56 | for (j=0; j<=d.size()-m_k; j++) { + | ~^~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 79 | for (j=0; j<=d.size()-m_k; j++) { + | ~^~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 109 | for (j=0; j<= d.isize()-m_k; j++) { + | ~^~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(vecDNAVectorStream&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] + 125 | int i, j; | ^ -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:26: warning: array subscript has type 'char' [-Wchar-subscripts] - 33 | if (_base_to_int[c] > 3) - | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~^~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~~~~~~~^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~^~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~~~~~~~^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~^~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~~~~~~~^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~^~~~ +[ 64%] Building CXX object CMakeFiles/Chrysalis.dir/util/mutil.cc.o /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 46 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/Chrysalis.dir/util/mutil.cc.o -MF CMakeFiles/Chrysalis.dir/util/mutil.cc.o.d -o CMakeFiles/Chrysalis.dir/util/mutil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 56 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 79 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:32: warning: array subscript has type 'char' [-Wchar-subscripts] - 264 | int val = _base_to_int[c]; - | ^ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 109 | for (j=0; j<= d.isize()-m_k; j++) { @@ -2576,28 +2644,18 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] 125 | int i, j; | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnKmer::add_next_kmer(kmer_int_type_t, unsigned int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:154:66: warning: unused parameter 'kmer_length' [-Wunused-parameter] - 154 | void DeBruijnKmer::add_next_kmer(kmer_int_type_t k, unsigned int kmer_length) { - | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/QuantifyGraph.cc: In function 'long long int BasesToNumberCountPlus(const std::vector >&, svec&, long long int&, const DNAVector&, int, const vecDNAVector&, int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/QuantifyGraph.cc:250:10: warning: ISO C++ forbids variable length array 'kmerseq' [-Wvla] 250 | char kmerseq [kmer_length + 1]; | ^~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:26: warning: array subscript has type 'char' [-Wchar-subscripts] + 33 | if (_base_to_int[c] > 3) + | ^ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/QuantifyGraph.cc: In function 'int main(int, char**)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/QuantifyGraph.cc:372:29: warning: unused variable 'prevNode' [-Wunused-variable] 372 | int prevNode = parser.AsInt(1); | ^~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc: In function 'int main(int, char**)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc:181:17: warning: unused variable 'num_iworm_contigs' [-Wunused-variable] - 181 | int num_iworm_contigs = parser.AsInt(2); - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc:143:10: warning: unused variable 'DEBUG' [-Wunused-variable] - 143 | bool DEBUG = P.GetBoolValueFor(debugCmmd); - | ^~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc:166:12: warning: unused variable 'pOut' [-Wunused-variable] - 166 | FILE * pOut = NULL; - | ^~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/QuantifyGraph.cc:409:13: warning: unused variable 'node' [-Wunused-variable] 409 | int node = parser.AsInt(0); | ^~~~ @@ -2610,14 +2668,37 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/QuantifyGraph.cc:350:16: warning: unused variable 'm' [-Wunused-variable] 350 | size_t m = kmers.size(); | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc: In member function 'long long int KmerSequence::BasesToNumber(const DNAVector&, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc:27:13: warning: unused variable 'i' [-Wunused-variable] - 27 | long long i; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnKmer::add_next_kmer(kmer_int_type_t, unsigned int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:154:66: warning: unused parameter 'kmer_length' [-Wunused-parameter] - 154 | void DeBruijnKmer::add_next_kmer(kmer_int_type_t k, unsigned int kmer_length) { - | ~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:32: warning: array subscript has type 'char' [-Wchar-subscripts] + 264 | int val = _base_to_int[c]; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] + 50 | bool StringParser::IsString(int index) + | ~~~~^~~~~ +[ 65%] Building CXX object CMakeFiles/QuantifyGraph.dir/util/mutil.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/QuantifyGraph.dir/util/mutil.cc.o -MF CMakeFiles/QuantifyGraph.dir/util/mutil.cc.o.d -o CMakeFiles/QuantifyGraph.dir/util/mutil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:13: warning: 'szText' may be used uninitialized [-Wmaybe-uninitialized] + 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/features.h:523, + from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/string.h:26, + from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.h:19, + from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:9: +/usr/include/stdio.h:442:12: note: by argument 2 of type 'const char*' to 'int fscanf(FILE*, const char*, ...)' declared here + 442 | extern int __REDIRECT (fscanf, (FILE *__restrict __stream, + | ^~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:311:8: note: 'szText' declared here + 311 | char szText[2048 * 10]; + | ^~~~~~ +[ 67%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o -MF CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o.d -o CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc +[ 68%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/BubbleUpClustering.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/BubbleUpClustering.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/BubbleUpClustering.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/BubbleUpClustering.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc +[ 70%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/DNAVector.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/DNAVector.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/DNAVector.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/DNAVector.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DNAVector.cc /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const vecDNAVector&, const vecNumVector&, int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:79:49: warning: unused variable 't' [-Wunused-variable] 79 | KmerAlignCoreRecordStoreTable & t = m_table; // not used? @@ -2650,67 +2731,45 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:291:9: warning: unused variable 'i' [-Wunused-variable] 291 | int i; | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:13: warning: 'szText' may be used uninitialized [-Wmaybe-uninitialized] + 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/features.h:523, + from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/string.h:26, + from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.h:19, + from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:9: +/usr/include/stdio.h:442:12: note: by argument 2 of type 'const char*' to 'int fscanf(FILE*, const char*, ...)' declared here + 442 | extern int __REDIRECT (fscanf, (FILE *__restrict __stream, + | ^~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:311:8: note: 'szText' declared here + 311 | char szText[2048 * 10]; + | ^~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnKmer::add_next_kmer(kmer_int_type_t, unsigned int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:154:66: warning: unused parameter 'kmer_length' [-Wunused-parameter] + 154 | void DeBruijnKmer::add_next_kmer(kmer_int_type_t k, unsigned int kmer_length) { + | ~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] + 50 | bool StringParser::IsString(int index) + | ~~~~^~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:26: warning: array subscript has type 'char' [-Wchar-subscripts] + 33 | if (_base_to_int[c] > 3) + | ^ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'std::vector DeBruijnGraph::deconvolute_DS_mirror_graph()': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:355:22: warning: variable 'rdk' set but not used [-Wunused-but-set-variable] 355 | DeBruijnKmer rdk = _kmer_map.find(rk)->second; | ^~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'std::vector DeBruijnGraph::deconvolute_DS_mirror_graph()': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:355:22: warning: variable 'rdk' set but not used [-Wunused-but-set-variable] - 355 | DeBruijnKmer rdk = _kmer_map.find(rk)->second; - | ^~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc: In function 'int main(int, char**)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:582:21: warning: unused variable 'num_iworm_contigs' [-Wunused-variable] - 582 | int num_iworm_contigs = parser.AsInt(2); - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:570:16: warning: unused variable 'pOut' [-Wunused-variable] - 570 | FILE * pOut = NULL; - | ^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'std::vector > DeBruijnGraph::get_candidate_weldmers(kmer_int_type_t, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:473:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 473 | for (int i = 0; i < left_extensions.size(); i++) { - | ~~^~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:476:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 476 | for (int j = 0; j < right_extensions.size(); j++) { - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnGraph::recursively_construct_kmer_extensions(kmer_int_type_t, std::vector&, std::vector >&, char, std::map&, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:513:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 513 | for (int i = 0; i < adjacent_kmers.size(); i++) { - | ~~^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:527:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 527 | if (kmer_extension_chars.size() == flank_extension_length) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 46 | for (j=0; j<=d.size()-m_k; j++) { - | ~^~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 56 | for (j=0; j<=d.size()-m_k; j++) { - | ~^~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 79 | for (j=0; j<=d.size()-m_k; j++) { - | ~^~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:342:10: warning: unused variable 'bSkip' [-Wunused-variable] - 342 | bool bSkip = P.GetBoolValueFor(skipCmmd); - | ^~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:347:9: warning: unused variable 'pairDist' [-Wunused-variable] - 347 | int pairDist = P.GetIntValueFor(distCmmd); - | ^~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:354:10: warning: variable 'bBreak' set but not used [-Wunused-but-set-variable] - 354 | bool bBreak = true; - | ^~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:359:10: warning: unused variable 'bButt' [-Wunused-variable] - 359 | bool bButt = P.GetBoolValueFor(buttCmmd); - | ^~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:361:10: warning: unused variable 'max_reads' [-Wunused-variable] - 361 | long max_reads = P.GetLongValueFor(maxReadsCmd); - | ^~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:372:10: warning: unused variable 'DEBUG' [-Wunused-variable] - 372 | bool DEBUG = P.GetBoolValueFor(debugCmmd); - | ^~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 109 | for (j=0; j<= d.isize()-m_k; j++) { - | ~^~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:32: warning: array subscript has type 'char' [-Wchar-subscripts] + 264 | int val = _base_to_int[c]; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc: In member function 'void KmerSequence::Setup()': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc:177:19: warning: unused variable 'i' [-Wunused-variable] + 177 | long long i; + | ^ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'std::vector > DeBruijnGraph::get_candidate_weldmers(kmer_int_type_t, int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:473:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 473 | for (int i = 0; i < left_extensions.size(); i++) { @@ -2718,17 +2777,10 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:476:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 476 | for (int j = 0; j < right_extensions.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(vecDNAVectorStream&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] - 125 | int i, j; - | ^ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnGraph::recursively_construct_kmer_extensions(kmer_int_type_t, std::vector&, std::vector >&, char, std::map&, int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:513:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 513 | for (int i = 0; i < adjacent_kmers.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:527:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 527 | if (kmer_extension_chars.size() == flank_extension_length) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const vecDNAVector&, const vecNumVector&, int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:79:49: warning: unused variable 't' [-Wunused-variable] 79 | KmerAlignCoreRecordStoreTable & t = m_table; // not used? @@ -2740,6 +2792,9 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:9: warning: unused variable 'i' [-Wunused-variable] 128 | int i, j, k; | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:527:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 527 | if (kmer_extension_chars.size() == flank_extension_length) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:12: warning: unused variable 'j' [-Wunused-variable] 128 | int i, j, k; | ^ @@ -2761,25 +2816,34 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:291:9: warning: unused variable 'i' [-Wunused-variable] 291 | int i; | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:13: warning: 'szText' may be used uninitialized [-Wmaybe-uninitialized] - 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/features.h:523, - from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/string.h:26, - from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.h:19, - from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:9: -/usr/include/stdio.h:442:12: note: by argument 2 of type 'const char*' to 'int fscanf(FILE*, const char*, ...)' declared here - 442 | extern int __REDIRECT (fscanf, (FILE *__restrict __stream, - | ^~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:311:8: note: 'szText' declared here - 311 | char szText[2048 * 10]; - | ^~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc: In member function 'void KmerSequence::Setup()': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc:177:19: warning: unused variable 'i' [-Wunused-variable] - 177 | long long i; - | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const vecDNAVector&, const vecNumVector&, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:79:49: warning: unused variable 't' [-Wunused-variable] + 79 | KmerAlignCoreRecordStoreTable & t = m_table; // not used? + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:49:9: warning: unused variable 'i' [-Wunused-variable] + 49 | int i, j, k; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const DNAVector&, int, int, bool)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:9: warning: unused variable 'i' [-Wunused-variable] + 128 | int i, j, k; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:12: warning: unused variable 'j' [-Wunused-variable] + 128 | int i, j, k; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::SortAll()': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:148:9: warning: unused variable 'i' [-Wunused-variable] + 148 | int i, j; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'const svec& KmerAlignCore::GetMatchesDirectly(const DNAVector&, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:158:9: warning: unused variable 'size' [-Wunused-variable] + 158 | int size = m_pTrans->GetSize(); + | ^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:9: warning: unused variable 'i' [-Wunused-variable] + 159 | int i, j; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:12: warning: unused variable 'j' [-Wunused-variable] + 159 | int i, j; + | ^ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc: In member function 'void KmerSearch::Extend(long long int, DNAVector&, const svec&, DNAVector&)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc:547:16: warning: unused variable 'plusminus' [-Wunused-variable] 547 | static int plusminus = 0; @@ -2788,13 +2852,15 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc:668:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 668 | for (i=0; i<=d.isize()-k; i++) { | ~^~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::MergeSortFilter(svec&, const svec&, const svec&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/aligns/KmerAlignCore.cc:291:9: warning: unused variable 'i' [-Wunused-variable] + 291 | int i; + | ^ +[ 71%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/DeBruijnGraph.cc.o /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc:647:10: warning: unused variable 'bAppend' [-Wunused-variable] 647 | bool bAppend = true; | ^~~~~~~ -[ 62%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o -[ 62%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o -MF CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o.d -o CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/DeBruijnGraph.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/DeBruijnGraph.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/DeBruijnGraph.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'bool SimpleHalves(const DNAVector&)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc:272:15: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 271 | ( (! DISABLE_REPEAT_CHECK) @@ -2815,6 +2881,16 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc:713:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 713 | for (int j = 0; j < adjacent_nodes.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc: In function 'int main(int, char**)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc:181:17: warning: unused variable 'num_iworm_contigs' [-Wunused-variable] + 181 | int num_iworm_contigs = parser.AsInt(2); + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc:143:10: warning: unused variable 'DEBUG' [-Wunused-variable] + 143 | bool DEBUG = P.GetBoolValueFor(debugCmmd); + | ^~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc:166:12: warning: unused variable 'pOut' [-Wunused-variable] + 166 | FILE * pOut = NULL; + | ^~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'svec sl_cluster_pools(std::map&, std::map&)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc:847:40: warning: implicitly-declared 'Pool& Pool::operator=(const Pool&)' is deprecated [-Wdeprecated-copy] 847 | pool_vec[oldpool_id] = tmp; @@ -2827,13 +2903,6 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc:961:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 961 | if (pair_link_count >= minCov) { | ~~~~~~~~~~~~~~~~^~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'svec grow_prioritized_clusters(std::string&, std::map&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:111:78: warning: unused parameter 'weld_reinforced_iworm_clusters' [-Wunused-parameter] - 111 | svec grow_prioritized_clusters(string& weld_graph_file, map& weld_reinforced_iworm_clusters) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:384:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 384 | system(command.c_str()); - | ~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'void add_iworm_link(std::map&, int, int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc:1006:55: warning: implicitly-declared 'Pool& Pool::operator=(const Pool&)' is deprecated [-Wdeprecated-copy] 1006 | weld_reinforced_iworm_clusters[iworm_index] = p; @@ -2841,14 +2910,6 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Pool.h:24:5: note: because 'Pool' has user-provided 'Pool::Pool(const Pool&)' 24 | Pool(const Pool& p) { | ^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'svec sl_cluster_pools(std::map&, std::map&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:326:40: warning: implicitly-declared 'Pool& Pool::operator=(const Pool&)' is deprecated [-Wdeprecated-copy] - 326 | pool_vec[oldpool_id] = tmp; - | ^~~ -In file included from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:19: -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Pool.h:24:5: note: because 'Pool' has user-provided 'Pool::Pool(const Pool&)' - 24 | Pool(const Pool& p) { - | ^~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'int main(int, char**)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc:1310:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1310 | for (i=0; i&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:525:57: warning: implicitly-declared 'Pool& Pool::operator=(const Pool&)' is deprecated [-Wdeprecated-copy] - 525 | weld_reinforced_iworm_clusters[ node_id ] = p; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Pool.h:24:5: note: because 'Pool' has user-provided 'Pool::Pool(const Pool&)' - 24 | Pool(const Pool& p) { - | ^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'int main(int, char**)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:628:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 628 | for (size_t j = 0; j < p.size(); j++) { - | ~~^~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:641:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 641 | for (size_t j = 0; j < p.size(); j++) { - | ~~^~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc:1454:13: warning: unused variable 'cutoff' [-Wunused-variable] - 1454 | int cutoff = 0; - | ^~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc:1268:9: warning: unused variable 'total_iworm_contigs' [-Wunused-variable] - 1268 | int total_iworm_contigs = dna.size(); - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~^~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~~~~~~~^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~^~~~ -[ 64%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o -MF CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o.d -o CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc -[ 65%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/stacktrace.cc.o -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 46 | for (j=0; j<=d.size()-m_k; j++) { - | ~^~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 56 | for (j=0; j<=d.size()-m_k; j++) { - | ~^~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 79 | for (j=0; j<=d.size()-m_k; j++) { - | ~^~~~~~~~~~~~~~ -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/analysis/stacktrace.cc.o -MF CMakeFiles/GraphFromFasta.dir/analysis/stacktrace.cc.o.d -o CMakeFiles/GraphFromFasta.dir/analysis/stacktrace.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/stacktrace.cc -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 109 | for (j=0; j<= d.isize()-m_k; j++) { - | ~^~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(vecDNAVectorStream&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] - 125 | int i, j; - | ^ -[ 67%] Building CXX object CMakeFiles/GraphFromFasta.dir/base/ErrorHandling.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/base/ErrorHandling.cc.o -MF CMakeFiles/GraphFromFasta.dir/base/ErrorHandling.cc.o.d -o CMakeFiles/GraphFromFasta.dir/base/ErrorHandling.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc -[ 68%] Building CXX object CMakeFiles/GraphFromFasta.dir/base/FileParser.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/base/FileParser.cc.o -MF CMakeFiles/GraphFromFasta.dir/base/FileParser.cc.o.d -o CMakeFiles/GraphFromFasta.dir/base/FileParser.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc -[ 70%] Building CXX object CMakeFiles/GraphFromFasta.dir/base/StringUtil.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/base/StringUtil.cc.o -MF CMakeFiles/GraphFromFasta.dir/base/StringUtil.cc.o.d -o CMakeFiles/GraphFromFasta.dir/base/StringUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/StringUtil.cc -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:26: warning: array subscript has type 'char' [-Wchar-subscripts] - 33 | if (_base_to_int[c] > 3) - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:32: warning: array subscript has type 'char' [-Wchar-subscripts] - 264 | int val = _base_to_int[c]; - | ^ -[ 71%] Building CXX object CMakeFiles/GraphFromFasta.dir/util/mutil.cc.o -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 46 | for (j=0; j<=d.size()-m_k; j++) { - | ~^~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 56 | for (j=0; j<=d.size()-m_k; j++) { - | ~^~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 79 | for (j=0; j<=d.size()-m_k; j++) { - | ~^~~~~~~~~~~~~~ -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/util/mutil.cc.o -MF CMakeFiles/GraphFromFasta.dir/util/mutil.cc.o.d -o CMakeFiles/GraphFromFasta.dir/util/mutil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 109 | for (j=0; j<= d.isize()-m_k; j++) { - | ~^~~~~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(vecDNAVectorStream&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] - 125 | int i, j; - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~^~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~~~~~~~^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~^~~~ -[ 72%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/util/mutil.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/ReadsToTranscripts.dir/util/mutil.cc.o -MF CMakeFiles/ReadsToTranscripts.dir/util/mutil.cc.o.d -o CMakeFiles/ReadsToTranscripts.dir/util/mutil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc -[ 74%] Building CXX object CMakeFiles/CreateIwormFastaBundle.dir/base/FileParser.cc.o -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:26: warning: array subscript has type 'char' [-Wchar-subscripts] - 33 | if (_base_to_int[c] > 3) - | ^ -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/CreateIwormFastaBundle.dir/base/FileParser.cc.o -MF CMakeFiles/CreateIwormFastaBundle.dir/base/FileParser.cc.o.d -o CMakeFiles/CreateIwormFastaBundle.dir/base/FileParser.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] - 50 | bool StringParser::IsString(int index) - | ~~~~^~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:32: warning: array subscript has type 'char' [-Wchar-subscripts] - 264 | int val = _base_to_int[c]; - | ^ -[ 75%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/stacktrace.cc -[ 77%] Building CXX object CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o -MF CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc -[ 78%] Building CXX object CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o -MF CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/StringUtil.cc -[ 80%] Building CXX object CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o -MF CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc -[ 81%] Building CXX object CMakeFiles/CreateIwormFastaBundle.dir/base/StringUtil.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/CreateIwormFastaBundle.dir/base/StringUtil.cc.o -MF CMakeFiles/CreateIwormFastaBundle.dir/base/StringUtil.cc.o.d -o CMakeFiles/CreateIwormFastaBundle.dir/base/StringUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/StringUtil.cc -[ 82%] Building CXX object CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o -MF CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc -[ 84%] Building CXX object CMakeFiles/QuantifyGraph.dir/base/FileParser.cc.o -[ 85%] Building CXX object CMakeFiles/QuantifyGraph.dir/base/StringUtil.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/QuantifyGraph.dir/base/StringUtil.cc.o -MF CMakeFiles/QuantifyGraph.dir/base/StringUtil.cc.o.d -o CMakeFiles/QuantifyGraph.dir/base/StringUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/StringUtil.cc -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/QuantifyGraph.dir/base/FileParser.cc.o -MF CMakeFiles/QuantifyGraph.dir/base/FileParser.cc.o.d -o CMakeFiles/QuantifyGraph.dir/base/FileParser.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] - 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { - | ^~~~~~~ ~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:303:51: warning: unused parameter 'pData' [-Wunused-parameter] - 303 | bool CMAsciiReadFileStream::ReadSimpleType(void * pData, long lenInBytes) - | ~~~~~~~^~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:303:63: warning: unused parameter 'lenInBytes' [-Wunused-parameter] - 303 | bool CMAsciiReadFileStream::ReadSimpleType(void * pData, long lenInBytes) - | ~~~~~^~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadString(CMString&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:436:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] - 436 | if (fscanf(m_pFile, pData, len, m_pFile) == EOF) { - | ^~~~~~~ ~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiWriteFileStream::WriteBlob(const void*, long int, long int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:526:53: warning: unused parameter 'pData' [-Wunused-parameter] - 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) - | ~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:526:65: warning: unused parameter 'lenInElements' [-Wunused-parameter] - 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) - | ~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:526:85: warning: unused parameter 'elSize' [-Wunused-parameter] - 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) - | ~~~~~^~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, bool)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:738:53: warning: unused parameter 'bLineFeed' [-Wunused-parameter] - 738 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, bool bLineFeed) - | ~~~~~^~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, long int, bool)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:761:63: warning: unused parameter 'bLineFeed' [-Wunused-parameter] - 761 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, long val, bool bLineFeed) - | ~~~~~^~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, const MCL_TCHAR*, bool)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:787:80: warning: unused parameter 'bLineFeed' [-Wunused-parameter] - 787 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, const MCL_TCHAR * szText2, bool bLineFeed) - | ~~~~~^~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'void MCLSetUTF8Encode(bool)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1288:39: warning: unused parameter 'b' [-Wunused-parameter] - 1288 | MDLLEXPORT void MCLSetUTF8Encode(bool b) - | ~~~~~^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~^~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~~~~~~~~~^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] - 7 | void print_trace(FILE *out, const char *file, int line) - | ~~~~^~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'bool AddUTF8Sig(CMString&)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1688:16: warning: unused variable 'p' [-Wunused-variable] - 1688 | const char * p = (const char*)string; - | ^ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { @@ -3081,26 +2960,49 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1288:39: warning: unused parameter 'b' [-Wunused-parameter] 1288 | MDLLEXPORT void MCLSetUTF8Encode(bool b) | ~~~~~^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc:1454:13: warning: unused variable 'cutoff' [-Wunused-variable] + 1454 | int cutoff = 0; + | ^~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/GraphFromFasta.cc:1268:9: warning: unused variable 'total_iworm_contigs' [-Wunused-variable] + 1268 | int total_iworm_contigs = dna.size(); + | ^~~~~~~~~~~~~~~~~~~ +[ 72%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/KmerTable.cc.o /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'bool AddUTF8Sig(CMString&)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1688:16: warning: unused variable 'p' [-Wunused-variable] 1688 | const char * p = (const char*)string; | ^ -[ 87%] Building CXX object CMakeFiles/QuantifyGraph.dir/analysis/sequenceUtil.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/QuantifyGraph.dir/analysis/sequenceUtil.cc.o -MF CMakeFiles/QuantifyGraph.dir/analysis/sequenceUtil.cc.o.d -o CMakeFiles/QuantifyGraph.dir/analysis/sequenceUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc -[ 88%] Building CXX object CMakeFiles/QuantifyGraph.dir/analysis/stacktrace.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/QuantifyGraph.dir/analysis/stacktrace.cc.o -MF CMakeFiles/QuantifyGraph.dir/analysis/stacktrace.cc.o.d -o CMakeFiles/QuantifyGraph.dir/analysis/stacktrace.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/stacktrace.cc -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] - 50 | bool StringParser::IsString(int index) - | ~~~~^~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] - 50 | bool StringParser::IsString(int index) - | ~~~~^~~~~ -[ 90%] Building CXX object CMakeFiles/QuantifyGraph.dir/util/mutil.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/QuantifyGraph.dir/util/mutil.cc.o -MF CMakeFiles/QuantifyGraph.dir/util/mutil.cc.o.d -o CMakeFiles/QuantifyGraph.dir/util/mutil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc -[ 91%] Building CXX object CMakeFiles/CreateIwormFastaBundle.dir/util/mutil.cc.o -/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/CreateIwormFastaBundle.dir/util/mutil.cc.o -MF CMakeFiles/CreateIwormFastaBundle.dir/util/mutil.cc.o.d -o CMakeFiles/CreateIwormFastaBundle.dir/util/mutil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/KmerTable.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/KmerTable.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/KmerTable.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc: In member function 'long long int KmerSequence::BasesToNumber(const DNAVector&, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc:27:13: warning: unused variable 'i' [-Wunused-variable] + 27 | long long i; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc: In function 'int main(int, char**)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:582:21: warning: unused variable 'num_iworm_contigs' [-Wunused-variable] + 582 | int num_iworm_contigs = parser.AsInt(2); + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:570:16: warning: unused variable 'pOut' [-Wunused-variable] + 570 | FILE * pOut = NULL; + | ^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:342:10: warning: unused variable 'bSkip' [-Wunused-variable] + 342 | bool bSkip = P.GetBoolValueFor(skipCmmd); + | ^~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:347:9: warning: unused variable 'pairDist' [-Wunused-variable] + 347 | int pairDist = P.GetIntValueFor(distCmmd); + | ^~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:354:10: warning: variable 'bBreak' set but not used [-Wunused-but-set-variable] + 354 | bool bBreak = true; + | ^~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:359:10: warning: unused variable 'bButt' [-Wunused-variable] + 359 | bool bButt = P.GetBoolValueFor(buttCmmd); + | ^~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:361:10: warning: unused variable 'max_reads' [-Wunused-variable] + 361 | long max_reads = P.GetLongValueFor(maxReadsCmd); + | ^~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:372:10: warning: unused variable 'DEBUG' [-Wunused-variable] + 372 | bool DEBUG = P.GetBoolValueFor(debugCmmd); + | ^~~~~ +[ 74%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { @@ -3141,25 +3043,21 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1288:39: warning: unused parameter 'b' [-Wunused-parameter] 1288 | MDLLEXPORT void MCLSetUTF8Encode(bool b) | ~~~~~^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:13: warning: 'szText' may be used uninitialized [-Wmaybe-uninitialized] - 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/features.h:523, - from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/string.h:26, - from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.h:19, - from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:9: -/usr/include/stdio.h:442:12: note: by argument 2 of type 'const char*' to 'int fscanf(FILE*, const char*, ...)' declared here - 442 | extern int __REDIRECT (fscanf, (FILE *__restrict __stream, - | ^~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:311:8: note: 'szText' declared here - 311 | char szText[2048 * 10]; - | ^~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'bool AddUTF8Sig(CMString&)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1688:16: warning: unused variable 'p' [-Wunused-variable] 1688 | const char * p = (const char*)string; | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc: In member function 'long long int KmerSequence::BasesToNumber(const DNAVector&, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc:27:13: warning: unused variable 'i' [-Wunused-variable] + 27 | long long i; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Chrysalis.cc:384:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 384 | system(command.c_str()); + | ~~~~~~^~~~~~~~~~~~~~~~~ +[ 75%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o -MF CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o.d -o CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc +[ 77%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:13: warning: 'szText' may be used uninitialized [-Wmaybe-uninitialized] 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { @@ -3175,10 +3073,18 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:311:8: note: 'szText' declared here 311 | char szText[2048 * 10]; | ^~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] - 50 | bool StringParser::IsString(int index) - | ~~~~^~~~~ +[ 78%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o -MF CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/stacktrace.cc +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 46 | for (j=0; j<=d.size()-m_k; j++) { + | ~^~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 56 | for (j=0; j<=d.size()-m_k; j++) { + | ~^~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 79 | for (j=0; j<=d.size()-m_k; j++) { + | ~^~~~~~~~~~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:13: warning: 'szText' may be used uninitialized [-Wmaybe-uninitialized] 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { @@ -3194,6 +3100,128 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:311:8: note: 'szText' declared here 311 | char szText[2048 * 10]; | ^~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnKmer::add_next_kmer(kmer_int_type_t, unsigned int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:154:66: warning: unused parameter 'kmer_length' [-Wunused-parameter] + 154 | void DeBruijnKmer::add_next_kmer(kmer_int_type_t k, unsigned int kmer_length) { + | ~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 109 | for (j=0; j<= d.isize()-m_k; j++) { + | ~^~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(vecDNAVectorStream&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] + 125 | int i, j; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'svec grow_prioritized_clusters(std::string&, std::map&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:111:78: warning: unused parameter 'weld_reinforced_iworm_clusters' [-Wunused-parameter] + 111 | svec grow_prioritized_clusters(string& weld_graph_file, map& weld_reinforced_iworm_clusters) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'svec sl_cluster_pools(std::map&, std::map&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:326:40: warning: implicitly-declared 'Pool& Pool::operator=(const Pool&)' is deprecated [-Wdeprecated-copy] + 326 | pool_vec[oldpool_id] = tmp; + | ^~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'std::vector DeBruijnGraph::deconvolute_DS_mirror_graph()': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:355:22: warning: variable 'rdk' set but not used [-Wunused-but-set-variable] + 355 | DeBruijnKmer rdk = _kmer_map.find(rk)->second; + | ^~~ +In file included from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:19: +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Pool.h:24:5: note: because 'Pool' has user-provided 'Pool::Pool(const Pool&)' + 24 | Pool(const Pool& p) { + | ^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'std::vector > DeBruijnGraph::get_candidate_weldmers(kmer_int_type_t, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:473:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 473 | for (int i = 0; i < left_extensions.size(); i++) { + | ~~^~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:476:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 476 | for (int j = 0; j < right_extensions.size(); j++) { + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnGraph::recursively_construct_kmer_extensions(kmer_int_type_t, std::vector&, std::vector >&, char, std::map&, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:513:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 513 | for (int i = 0; i < adjacent_kmers.size(); i++) { + | ~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:527:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 527 | if (kmer_extension_chars.size() == flank_extension_length) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 80%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/stacktrace.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/analysis/stacktrace.cc.o -MF CMakeFiles/GraphFromFasta.dir/analysis/stacktrace.cc.o.d -o CMakeFiles/GraphFromFasta.dir/analysis/stacktrace.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/stacktrace.cc +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'void populate_weld_reinforced_iworm_clusters(std::string&, std::map&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:525:57: warning: implicitly-declared 'Pool& Pool::operator=(const Pool&)' is deprecated [-Wdeprecated-copy] + 525 | weld_reinforced_iworm_clusters[ node_id ] = p; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/Pool.h:24:5: note: because 'Pool' has user-provided 'Pool::Pool(const Pool&)' + 24 | Pool(const Pool& p) { + | ^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'int main(int, char**)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:628:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 628 | for (size_t j = 0; j < p.size(); j++) { + | ~~^~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:641:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 641 | for (size_t j = 0; j < p.size(); j++) { + | ~~^~~~~~~~~~ +[ 81%] Building CXX object CMakeFiles/GraphFromFasta.dir/base/ErrorHandling.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/base/ErrorHandling.cc.o -MF CMakeFiles/GraphFromFasta.dir/base/ErrorHandling.cc.o.d -o CMakeFiles/GraphFromFasta.dir/base/ErrorHandling.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc +[ 82%] Building CXX object CMakeFiles/GraphFromFasta.dir/base/FileParser.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/base/FileParser.cc.o -MF CMakeFiles/GraphFromFasta.dir/base/FileParser.cc.o.d -o CMakeFiles/GraphFromFasta.dir/base/FileParser.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc: In member function 'long long int KmerSequence::BasesToNumber(const DNAVector&, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/KmerTable.cc:27:13: warning: unused variable 'i' [-Wunused-variable] + 27 | long long i; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 46 | for (j=0; j<=d.size()-m_k; j++) { + | ~^~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 56 | for (j=0; j<=d.size()-m_k; j++) { + | ~^~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 79 | for (j=0; j<=d.size()-m_k; j++) { + | ~^~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 109 | for (j=0; j<= d.isize()-m_k; j++) { + | ~^~~~~~~~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(vecDNAVectorStream&)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] + 125 | int i, j; + | ^ +[ 84%] Building CXX object CMakeFiles/GraphFromFasta.dir/base/StringUtil.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/base/StringUtil.cc.o -MF CMakeFiles/GraphFromFasta.dir/base/StringUtil.cc.o.d -o CMakeFiles/GraphFromFasta.dir/base/StringUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/StringUtil.cc +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~^~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~~~~~~~^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:26: warning: array subscript has type 'char' [-Wchar-subscripts] + 33 | if (_base_to_int[c] > 3) + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:32: warning: array subscript has type 'char' [-Wchar-subscripts] + 264 | int val = _base_to_int[c]; + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:26: warning: array subscript has type 'char' [-Wchar-subscripts] + 33 | if (_base_to_int[c] > 3) + | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:32: warning: array subscript has type 'char' [-Wchar-subscripts] + 264 | int val = _base_to_int[c]; + | ^ +[ 85%] Building CXX object CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o -MF CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc +[ 87%] Building CXX object CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o -MF CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc +[ 88%] Building CXX object CMakeFiles/GraphFromFasta.dir/util/mutil.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/GraphFromFasta.dir/util/mutil.cc.o -MF CMakeFiles/GraphFromFasta.dir/util/mutil.cc.o.d -o CMakeFiles/GraphFromFasta.dir/util/mutil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc +[ 90%] Building CXX object CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o -MF CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/StringUtil.cc +[ 91%] Building CXX object CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o +/usr/bin/g++ -I/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -MD -MT CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o -MF CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o.d -o CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o -c /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { @@ -3234,18 +3262,43 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1288:39: warning: unused parameter 'b' [-Wunused-parameter] 1288 | MDLLEXPORT void MCLSetUTF8Encode(bool b) | ~~~~~^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] + 50 | bool StringParser::IsString(int index) + | ~~~~^~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In function 'bool AddUTF8Sig(CMString&)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:1688:16: warning: unused variable 'p' [-Wunused-variable] 1688 | const char * p = (const char*)string; | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:26: warning: array subscript has type 'char' [-Wchar-subscripts] - 33 | if (_base_to_int[c] > 3) - | ^ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:32: warning: array subscript has type 'char' [-Wchar-subscripts] - 264 | int val = _base_to_int[c]; - | ^ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~^~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~~~~~~~~~^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] + 7 | void print_trace(FILE *out, const char *file, int line) + | ~~~~^~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] + 50 | bool StringParser::IsString(int index) + | ~~~~^~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:13: warning: 'szText' may be used uninitialized [-Wmaybe-uninitialized] + 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/features.h:523, + from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/string.h:26, + from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.h:19, + from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:9: +/usr/include/stdio.h:442:12: note: by argument 2 of type 'const char*' to 'int fscanf(FILE*, const char*, ...)' declared here + 442 | extern int __REDIRECT (fscanf, (FILE *__restrict __stream, + | ^~~~~~~~~~ +/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:311:8: note: 'szText' declared here + 311 | char szText[2048 * 10]; + | ^~~~~~ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { @@ -3305,46 +3358,31 @@ /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:311:8: note: 'szText' declared here 311 | char szText[2048 * 10]; | ^~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:313:13: warning: 'szText' may be used uninitialized [-Wmaybe-uninitialized] - 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/features.h:523, - from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/string.h:26, - from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.h:19, - from /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:9: -/usr/include/stdio.h:442:12: note: by argument 2 of type 'const char*' to 'int fscanf(FILE*, const char*, ...)' declared here - 442 | extern int __REDIRECT (fscanf, (FILE *__restrict __stream, - | ^~~~~~~~~~ -/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis/util/mutil.cc:311:8: note: 'szText' declared here - 311 | char szText[2048 * 10]; - | ^~~~~~ -[ 92%] Linking CXX executable Chrysalis -/usr/bin/cmake -E cmake_link_script CMakeFiles/Chrysalis.dir/link.txt --verbose=1 +[ 92%] Linking CXX executable CreateIwormFastaBundle +/usr/bin/cmake -E cmake_link_script CMakeFiles/CreateIwormFastaBundle.dir/link.txt --verbose=1 [ 94%] Linking CXX executable ReadsToTranscripts /usr/bin/cmake -E cmake_link_script CMakeFiles/ReadsToTranscripts.dir/link.txt --verbose=1 -[ 95%] Linking CXX executable BubbleUpClustering -/usr/bin/cmake -E cmake_link_script CMakeFiles/BubbleUpClustering.dir/link.txt --verbose=1 -[ 97%] Linking CXX executable QuantifyGraph -/usr/bin/cmake -E cmake_link_script CMakeFiles/QuantifyGraph.dir/link.txt --verbose=1 -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic -Wl,--dependency-file=CMakeFiles/Chrysalis.dir/link.d CMakeFiles/Chrysalis.dir/aligns/KmerAlignCore.cc.o CMakeFiles/Chrysalis.dir/analysis/AACodons.cc.o CMakeFiles/Chrysalis.dir/analysis/Chrysalis.cc.o CMakeFiles/Chrysalis.dir/analysis/DNAVector.cc.o CMakeFiles/Chrysalis.dir/analysis/TranscriptomeGraph.cc.o CMakeFiles/Chrysalis.dir/base/ErrorHandling.cc.o CMakeFiles/Chrysalis.dir/base/FileParser.cc.o CMakeFiles/Chrysalis.dir/base/StringUtil.cc.o CMakeFiles/Chrysalis.dir/util/mutil.cc.o -o Chrysalis +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic -Wl,--dependency-file=CMakeFiles/CreateIwormFastaBundle.dir/link.d CMakeFiles/CreateIwormFastaBundle.dir/analysis/AACodons.cc.o CMakeFiles/CreateIwormFastaBundle.dir/analysis/CreateIwormFastaBundle.cc.o CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o CMakeFiles/CreateIwormFastaBundle.dir/base/ErrorHandling.cc.o CMakeFiles/CreateIwormFastaBundle.dir/base/FileParser.cc.o CMakeFiles/CreateIwormFastaBundle.dir/base/StringUtil.cc.o CMakeFiles/CreateIwormFastaBundle.dir/util/mutil.cc.o -o CreateIwormFastaBundle make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' -[ 97%] Built target Chrysalis +[ 94%] Built target CreateIwormFastaBundle /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic -Wl,--dependency-file=CMakeFiles/ReadsToTranscripts.dir/link.d CMakeFiles/ReadsToTranscripts.dir/analysis/AACodons.cc.o CMakeFiles/ReadsToTranscripts.dir/analysis/DNAVector.cc.o CMakeFiles/ReadsToTranscripts.dir/analysis/NonRedKmerTable.cc.o CMakeFiles/ReadsToTranscripts.dir/analysis/ReadsToTranscripts.cc.o CMakeFiles/ReadsToTranscripts.dir/analysis/sequenceUtil.cc.o CMakeFiles/ReadsToTranscripts.dir/analysis/stacktrace.cc.o CMakeFiles/ReadsToTranscripts.dir/base/ErrorHandling.cc.o CMakeFiles/ReadsToTranscripts.dir/base/FileParser.cc.o CMakeFiles/ReadsToTranscripts.dir/base/StringUtil.cc.o CMakeFiles/ReadsToTranscripts.dir/util/mutil.cc.o -o ReadsToTranscripts make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' -[ 97%] Built target ReadsToTranscripts -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic -Wl,--dependency-file=CMakeFiles/BubbleUpClustering.dir/link.d CMakeFiles/BubbleUpClustering.dir/aligns/KmerAlignCore.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/AACodons.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/BubbleUpClustering.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/DNAVector.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/DeBruijnGraph.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/KmerTable.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o -o BubbleUpClustering -make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' -[ 97%] Built target BubbleUpClustering +[ 94%] Built target ReadsToTranscripts +[ 95%] Linking CXX executable QuantifyGraph +/usr/bin/cmake -E cmake_link_script CMakeFiles/QuantifyGraph.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic -Wl,--dependency-file=CMakeFiles/QuantifyGraph.dir/link.d CMakeFiles/QuantifyGraph.dir/aligns/KmerAlignCore.cc.o CMakeFiles/QuantifyGraph.dir/analysis/AACodons.cc.o CMakeFiles/QuantifyGraph.dir/analysis/DNAVector.cc.o CMakeFiles/QuantifyGraph.dir/analysis/KmerTable.cc.o CMakeFiles/QuantifyGraph.dir/analysis/NonRedKmerTable.cc.o CMakeFiles/QuantifyGraph.dir/analysis/QuantifyGraph.cc.o CMakeFiles/QuantifyGraph.dir/base/ErrorHandling.cc.o CMakeFiles/QuantifyGraph.dir/base/FileParser.cc.o CMakeFiles/QuantifyGraph.dir/base/StringUtil.cc.o CMakeFiles/QuantifyGraph.dir/analysis/sequenceUtil.cc.o CMakeFiles/QuantifyGraph.dir/analysis/stacktrace.cc.o CMakeFiles/QuantifyGraph.dir/util/mutil.cc.o -o QuantifyGraph make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' -[ 97%] Built target QuantifyGraph -[ 98%] Linking CXX executable CreateIwormFastaBundle -/usr/bin/cmake -E cmake_link_script CMakeFiles/CreateIwormFastaBundle.dir/link.txt --verbose=1 -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic -Wl,--dependency-file=CMakeFiles/CreateIwormFastaBundle.dir/link.d CMakeFiles/CreateIwormFastaBundle.dir/analysis/AACodons.cc.o CMakeFiles/CreateIwormFastaBundle.dir/analysis/CreateIwormFastaBundle.cc.o CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o CMakeFiles/CreateIwormFastaBundle.dir/base/ErrorHandling.cc.o CMakeFiles/CreateIwormFastaBundle.dir/base/FileParser.cc.o CMakeFiles/CreateIwormFastaBundle.dir/base/StringUtil.cc.o CMakeFiles/CreateIwormFastaBundle.dir/util/mutil.cc.o -o CreateIwormFastaBundle +[ 95%] Built target QuantifyGraph +[ 97%] Linking CXX executable BubbleUpClustering +/usr/bin/cmake -E cmake_link_script CMakeFiles/BubbleUpClustering.dir/link.txt --verbose=1 +[ 98%] Linking CXX executable Chrysalis +/usr/bin/cmake -E cmake_link_script CMakeFiles/Chrysalis.dir/link.txt --verbose=1 +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic -Wl,--dependency-file=CMakeFiles/BubbleUpClustering.dir/link.d CMakeFiles/BubbleUpClustering.dir/aligns/KmerAlignCore.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/AACodons.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/BubbleUpClustering.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/DNAVector.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/DeBruijnGraph.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/KmerTable.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o -o BubbleUpClustering make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' -[ 98%] Built target CreateIwormFastaBundle +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic -Wl,--dependency-file=CMakeFiles/Chrysalis.dir/link.d CMakeFiles/Chrysalis.dir/aligns/KmerAlignCore.cc.o CMakeFiles/Chrysalis.dir/analysis/AACodons.cc.o CMakeFiles/Chrysalis.dir/analysis/Chrysalis.cc.o CMakeFiles/Chrysalis.dir/analysis/DNAVector.cc.o CMakeFiles/Chrysalis.dir/analysis/TranscriptomeGraph.cc.o CMakeFiles/Chrysalis.dir/base/ErrorHandling.cc.o CMakeFiles/Chrysalis.dir/base/FileParser.cc.o CMakeFiles/Chrysalis.dir/base/StringUtil.cc.o CMakeFiles/Chrysalis.dir/util/mutil.cc.o -o Chrysalis +[ 98%] Built target BubbleUpClustering +make[4]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' +[ 98%] Built target Chrysalis [100%] Linking CXX executable GraphFromFasta /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphFromFasta.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic -Wl,--dependency-file=CMakeFiles/GraphFromFasta.dir/link.d CMakeFiles/GraphFromFasta.dir/aligns/KmerAlignCore.cc.o CMakeFiles/GraphFromFasta.dir/analysis/AACodons.cc.o CMakeFiles/GraphFromFasta.dir/analysis/DNAVector.cc.o CMakeFiles/GraphFromFasta.dir/analysis/DeBruijnGraph.cc.o CMakeFiles/GraphFromFasta.dir/analysis/GraphFromFasta.cc.o CMakeFiles/GraphFromFasta.dir/analysis/KmerTable.cc.o CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o CMakeFiles/GraphFromFasta.dir/analysis/stacktrace.cc.o CMakeFiles/GraphFromFasta.dir/base/ErrorHandling.cc.o CMakeFiles/GraphFromFasta.dir/base/FileParser.cc.o CMakeFiles/GraphFromFasta.dir/base/StringUtil.cc.o CMakeFiles/GraphFromFasta.dir/util/mutil.cc.o -o GraphFromFasta @@ -3355,7 +3393,7 @@ make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' for target in trinity-plugins/slclust trinity-plugins/scaffold_iworm_contigs trinity-plugins/bamsifter trinity-plugins/seqtk-trinity; do dh_auto_build \ --sourcedirectory=${target}; done - cd trinity-plugins/slclust && make -j40 INSTALL="install --strip-program=true" + cd trinity-plugins/slclust && make -j42 INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ @@ -3380,11 +3418,11 @@ chmod 755 slclust make[3]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/slclust/src' make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/slclust' - cd trinity-plugins/scaffold_iworm_contigs && make -j40 INSTALL="install --strip-program=true" + cd trinity-plugins/scaffold_iworm_contigs && make -j42 INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/scaffold_iworm_contigs' g++ -Wl,-z,relro -Wl,-z,now -I../htslib -L../htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection ScaffoldIwormContigs.cpp error_checker.cpp -lhts -o scaffold_iworm_contigs make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/scaffold_iworm_contigs' - cd trinity-plugins/bamsifter && make -j40 INSTALL="install --strip-program=true" + cd trinity-plugins/bamsifter && make -j42 INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/bamsifter' g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -std=c++11 -o bamsifter sift_bam_max_cov.cpp -Wall -O2 -L./htslib/build/lib/ -I./htslib/build/include -lhts cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -3398,7 +3436,7 @@ 2973 | find(const _CharT* __s, size_type __pos = 0) const _GLIBCXX_NOEXCEPT | ^~~~ make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/bamsifter' - cd trinity-plugins/seqtk-trinity && make -j40 INSTALL="install --strip-program=true" + cd trinity-plugins/seqtk-trinity && make -j42 INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/seqtk-trinity' cc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/trinityrnaseq-2.15.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wno-unused-function -Wdate-time -D_FORTIFY_SOURCE=2 seqtk.c -o seqtk-trinity -lz -lm make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/seqtk-trinity' @@ -3409,30 +3447,15 @@ warning: [options] source value 8 is obsolete and will be removed in a future release warning: [options] target value 8 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. -./Butterfly/Butterfly/src/src/ZipperAlignment.java:39: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - as.alignedBaseCounter.put(nameA, new Integer(shorter_len)); - ^ -./Butterfly/Butterfly/src/src/ZipperAlignment.java:40: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - as.alignedBaseCounter.put(nameB, new Integer(shorter_len)); - ^ -./Butterfly/Butterfly/src/src/ZipperAlignment.java:71: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - as.alignedBaseCounter.put(nameA, new Integer(shorter_len)); - ^ -./Butterfly/Butterfly/src/src/ZipperAlignment.java:72: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - as.alignedBaseCounter.put(nameB, new Integer(shorter_len)); - ^ -./Butterfly/Butterfly/src/src/AlignmentStats.java:54: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - alignedBaseCounter.put(nameA, new Integer(0)); - ^ -./Butterfly/Butterfly/src/src/AlignmentStats.java:55: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - alignedBaseCounter.put(nameB, new Integer(0)); - ^ -./Butterfly/Butterfly/src/src/AlignmentStats.java:126: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - alignedBaseCounter.put(nameA, new Integer(alignedBaseCounter.get(nameA) + 1)); - ^ -./Butterfly/Butterfly/src/src/AlignmentStats.java:130: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - alignedBaseCounter.put(nameB, new Integer (alignedBaseCounter.get(nameB) + 1)); - ^ +./Butterfly/Butterfly/src/src/IsoformExpressionLearning.java:396: warning: [removal] Double(double) in Double has been deprecated and marked for removal + Double len = new Double(0); + ^ +./Butterfly/Butterfly/src/src/IsoformExpressionLearning.java:515: warning: [removal] Double(double) in Double has been deprecated and marked for removal + Double sum = new Double(0); + ^ +./Butterfly/Butterfly/src/src/IsoformExpressionLearning.java:576: warning: [removal] Double(double) in Double has been deprecated and marked for removal + vec.set(i, new Double(0)); + ^ ./Butterfly/Butterfly/src/src/TransAssembly_allProbPaths.java:4043: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal transcripts.put(path, new Pair(new Integer(1), new Integer(1))); ^ @@ -3466,15 +3489,30 @@ ./Butterfly/Butterfly/src/src/TransAssembly_allProbPaths.java:15118: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal path_index.put(node, new Boolean(true)); ^ -./Butterfly/Butterfly/src/src/IsoformExpressionLearning.java:396: warning: [removal] Double(double) in Double has been deprecated and marked for removal - Double len = new Double(0); - ^ -./Butterfly/Butterfly/src/src/IsoformExpressionLearning.java:515: warning: [removal] Double(double) in Double has been deprecated and marked for removal - Double sum = new Double(0); - ^ -./Butterfly/Butterfly/src/src/IsoformExpressionLearning.java:576: warning: [removal] Double(double) in Double has been deprecated and marked for removal - vec.set(i, new Double(0)); - ^ +./Butterfly/Butterfly/src/src/AlignmentStats.java:54: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + alignedBaseCounter.put(nameA, new Integer(0)); + ^ +./Butterfly/Butterfly/src/src/AlignmentStats.java:55: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + alignedBaseCounter.put(nameB, new Integer(0)); + ^ +./Butterfly/Butterfly/src/src/AlignmentStats.java:126: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + alignedBaseCounter.put(nameA, new Integer(alignedBaseCounter.get(nameA) + 1)); + ^ +./Butterfly/Butterfly/src/src/AlignmentStats.java:130: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + alignedBaseCounter.put(nameB, new Integer (alignedBaseCounter.get(nameB) + 1)); + ^ +./Butterfly/Butterfly/src/src/ZipperAlignment.java:39: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + as.alignedBaseCounter.put(nameA, new Integer(shorter_len)); + ^ +./Butterfly/Butterfly/src/src/ZipperAlignment.java:40: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + as.alignedBaseCounter.put(nameB, new Integer(shorter_len)); + ^ +./Butterfly/Butterfly/src/src/ZipperAlignment.java:71: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + as.alignedBaseCounter.put(nameA, new Integer(shorter_len)); + ^ +./Butterfly/Butterfly/src/src/ZipperAlignment.java:72: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + as.alignedBaseCounter.put(nameB, new Integer(shorter_len)); + ^ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 26 warnings @@ -3515,9598 +3553,13 @@ * @param l ^ 12 warnings - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg' -java -cp Butterfly.jar TransAssembly_allProbPaths -N 10000 -L 300 \ - -F 300 -C Butterfly/Butterfly/src/sample_data/c1.graph --stderr -V 20 -Started -using Path alignment for path comparisons -combine paths if (identity=(numberOfMatches/shorterLen) > 98.0% or if we have <= 2 mismatches) and if we have internal gap lengths <= 10 -path reinforcement distance computed based on 25% of max pair distance: 300 = 75 bases -SECTION -================ -Parsing de Bruijn graph -====================== - -preProcessGraphFile: Butterfly/Butterfly/src/sample_data/c1.graph.out -SECTION -================== -buildNewGraph -======================== - -buildNewGraphFirstLetter: Butterfly/Butterfly/src/sample_data/c1.graph.out -KMER_SIZE=24 - [17] [34] [51] [68] [85] [102] [119] [136] [153] [170] [187] [204] [221] [238] [255] [272] [289] [306] [323] [340] [357] [374] [391] [408] [425] [442] [459] [476] [493] Graph is built -NODE_DESCR: GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) Preds: [] Succ: [C:W-1(V381_D-1) ] -NODE_DESCR: C:W-1(V381_D-1) Preds: [GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) ] Succ: [A:W-1(V382_D-1) ] -NODE_DESCR: A:W-1(V382_D-1) Preds: [C:W-1(V381_D-1) ] Succ: [C:W-1(V383_D-1) ] -NODE_DESCR: C:W-1(V383_D-1) Preds: [A:W-1(V382_D-1) ] Succ: [A:W-1(V384_D-1) ] -NODE_DESCR: A:W-1(V384_D-1) Preds: [C:W-1(V383_D-1) ] Succ: [T:W-1(V385_D-1) ] -NODE_DESCR: T:W-1(V385_D-1) Preds: [A:W-1(V384_D-1) ] Succ: [T:W-1(V386_D-1) ] -NODE_DESCR: T:W-1(V386_D-1) Preds: [T:W-1(V385_D-1) ] Succ: [T:W-1(V387_D-1) ] -NODE_DESCR: T:W-1(V387_D-1) Preds: [T:W-1(V386_D-1) ] Succ: [C:W-1(V388_D-1) ] -NODE_DESCR: C:W-1(V388_D-1) Preds: [T:W-1(V387_D-1) ] Succ: [T:W-1(V389_D-1) ] -NODE_DESCR: T:W-1(V389_D-1) Preds: [C:W-1(V388_D-1) ] Succ: [A:W-1(V390_D-1) ] -NODE_DESCR: A:W-1(V390_D-1) Preds: [T:W-1(V389_D-1) ] Succ: [C:W-1(V391_D-1) ] -NODE_DESCR: C:W-1(V391_D-1) Preds: [A:W-1(V390_D-1) ] Succ: [T:W-1(V392_D-1) ] -NODE_DESCR: T:W-1(V392_D-1) Preds: [C:W-1(V391_D-1) ] Succ: [G:W-1(V393_D-1) ] -NODE_DESCR: G:W-1(V393_D-1) Preds: [T:W-1(V392_D-1) ] Succ: [G:W-1(V394_D-1) ] -NODE_DESCR: G:W-1(V394_D-1) Preds: [G:W-1(V393_D-1) ] Succ: [C:W-1(V395_D-1) ] -NODE_DESCR: C:W-1(V395_D-1) Preds: [G:W-1(V394_D-1) ] Succ: [T:W-1(V396_D-1) ] -NODE_DESCR: T:W-1(V396_D-1) Preds: [C:W-1(V395_D-1) ] Succ: [A:W-1(V397_D-1) ] -NODE_DESCR: A:W-1(V397_D-1) Preds: [T:W-1(V396_D-1) ] Succ: [C:W-1(V398_D-1) ] -NODE_DESCR: C:W-1(V398_D-1) Preds: [A:W-1(V397_D-1) ] Succ: [A:W-1(V399_D-1) ] -NODE_DESCR: A:W-1(V399_D-1) Preds: [C:W-1(V398_D-1) ] Succ: [A:W-1(V400_D-1) ] -NODE_DESCR: A:W-1(V400_D-1) Preds: [A:W-1(V399_D-1) ] Succ: [A:W-1(V401_D-1) ] -NODE_DESCR: A:W-1(V401_D-1) Preds: [A:W-1(V400_D-1) ] Succ: [C:W-1(V402_D-1) ] -NODE_DESCR: C:W-1(V402_D-1) Preds: [A:W-1(V401_D-1) ] Succ: [A:W-1(V403_D-1) ] -NODE_DESCR: A:W-1(V403_D-1) Preds: [C:W-1(V402_D-1) ] Succ: [G:W-1(V404_D-1) ] -NODE_DESCR: G:W-1(V404_D-1) Preds: [A:W-1(V403_D-1) ] Succ: [A:W-1(V405_D-1) ] -NODE_DESCR: A:W-1(V405_D-1) Preds: [G:W-1(V404_D-1) ] Succ: [C:W-1(V406_D-1) ] -NODE_DESCR: C:W-1(V406_D-1) Preds: [A:W-1(V405_D-1) ] Succ: [T:W-1(V407_D-1) ] -NODE_DESCR: T:W-1(V407_D-1) Preds: [C:W-1(V406_D-1) ] Succ: [T:W-1(V408_D-1) ] -NODE_DESCR: T:W-1(V408_D-1) Preds: [T:W-1(V407_D-1) ] Succ: [C:W-1(V409_D-1) ] -NODE_DESCR: C:W-1(V409_D-1) Preds: [T:W-1(V408_D-1) ] Succ: [C:W-1(V410_D-1) ] -NODE_DESCR: C:W-1(V410_D-1) Preds: [C:W-1(V409_D-1) ] Succ: [T:W-1(V411_D-1) ] -NODE_DESCR: T:W-1(V411_D-1) Preds: [C:W-1(V410_D-1) ] Succ: [C:W-1(V412_D-1) ] -NODE_DESCR: C:W-1(V412_D-1) Preds: [T:W-1(V411_D-1) ] Succ: [A:W-1(V413_D-1) ] -NODE_DESCR: A:W-1(V413_D-1) Preds: [C:W-1(V412_D-1) ] Succ: [A:W-1(V414_D-1) ] -NODE_DESCR: A:W-1(V414_D-1) Preds: [A:W-1(V413_D-1) ] Succ: [G:W-1(V415_D-1) ] -NODE_DESCR: G:W-1(V415_D-1) Preds: [A:W-1(V414_D-1) ] Succ: [C:W-1(V416_D-1) G:W-1(V885_D-1) ] -NODE_DESCR: C:W-1(V416_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V417_D-1) ] -NODE_DESCR: C:W-1(V417_D-1) Preds: [C:W-1(V416_D-1) ] Succ: [T:W-1(V418_D-1) ] -NODE_DESCR: T:W-1(V418_D-1) Preds: [C:W-1(V417_D-1) ] Succ: [C:W-1(V419_D-1) ] -NODE_DESCR: C:W-1(V419_D-1) Preds: [T:W-1(V418_D-1) ] Succ: [A:W-1(V420_D-1) ] -NODE_DESCR: A:W-1(V420_D-1) Preds: [C:W-1(V419_D-1) ] Succ: [T:W-1(V421_D-1) ] -NODE_DESCR: T:W-1(V421_D-1) Preds: [A:W-1(V420_D-1) ] Succ: [C:W-1(V422_D-1) ] -NODE_DESCR: C:W-1(V422_D-1) Preds: [T:W-1(V421_D-1) ] Succ: [A:W-1(V423_D-1) ] -NODE_DESCR: A:W-1(V423_D-1) Preds: [C:W-1(V422_D-1) ] Succ: [G:W-1(V424_D-1) ] -NODE_DESCR: G:W-1(V424_D-1) Preds: [A:W-1(V423_D-1) ] Succ: [C:W-1(V425_D-1) ] -NODE_DESCR: C:W-1(V425_D-1) Preds: [G:W-1(V424_D-1) ] Succ: [A:W-1(V426_D-1) ] -NODE_DESCR: A:W-1(V426_D-1) Preds: [C:W-1(V425_D-1) ] Succ: [A:W-1(V427_D-1) ] -NODE_DESCR: A:W-1(V427_D-1) Preds: [A:W-1(V426_D-1) ] Succ: [G:W-1(V428_D-1) ] -NODE_DESCR: G:W-1(V428_D-1) Preds: [A:W-1(V427_D-1) ] Succ: [A:W-1(V429_D-1) ] -NODE_DESCR: A:W-1(V429_D-1) Preds: [G:W-1(V428_D-1) ] Succ: [A:W-1(V430_D-1) ] -NODE_DESCR: A:W-1(V430_D-1) Preds: [A:W-1(V429_D-1) ] Succ: [G:W-1(V431_D-1) ] -NODE_DESCR: G:W-1(V431_D-1) Preds: [A:W-1(V430_D-1) ] Succ: [A:W-1(V432_D-1) ] -NODE_DESCR: A:W-1(V432_D-1) Preds: [G:W-1(V431_D-1) ] Succ: [A:W-1(V433_D-1) ] -NODE_DESCR: A:W-1(V433_D-1) Preds: [A:W-1(V432_D-1) ] Succ: [A:W-1(V434_D-1) ] -NODE_DESCR: A:W-1(V434_D-1) Preds: [A:W-1(V433_D-1) ] Succ: [T:W-1(V435_D-1) ] -NODE_DESCR: T:W-1(V435_D-1) Preds: [A:W-1(V434_D-1) ] Succ: [C:W-1(V436_D-1) ] -NODE_DESCR: C:W-1(V436_D-1) Preds: [T:W-1(V435_D-1) ] Succ: [T:W-1(V437_D-1) ] -NODE_DESCR: T:W-1(V437_D-1) Preds: [C:W-1(V436_D-1) ] Succ: [T:W-1(V438_D-1) ] -NODE_DESCR: T:W-1(V438_D-1) Preds: [T:W-1(V437_D-1) ] Succ: [T:W-1(V439_D-1) ] -NODE_DESCR: T:W-1(V439_D-1) Preds: [T:W-1(V438_D-1) ] Succ: [C:W-1(V440_D-1) ] -NODE_DESCR: C:W-1(V440_D-1) Preds: [T:W-1(V439_D-1) T:W-1(V908_D-1) ] Succ: [T:W-1(V441_D-1) ] -NODE_DESCR: T:W-1(V441_D-1) Preds: [C:W-1(V440_D-1) ] Succ: [T:W-1(V442_D-1) ] -NODE_DESCR: T:W-1(V442_D-1) Preds: [T:W-1(V441_D-1) ] Succ: [T:W-1(V443_D-1) ] -NODE_DESCR: T:W-1(V443_D-1) Preds: [T:W-1(V442_D-1) ] Succ: [C:W-1(V444_D-1) ] -NODE_DESCR: C:W-1(V444_D-1) Preds: [T:W-1(V443_D-1) ] Succ: [C:W-1(V445_D-1) ] -NODE_DESCR: C:W-1(V445_D-1) Preds: [C:W-1(V444_D-1) ] Succ: [A:W-1(V446_D-1) ] -NODE_DESCR: A:W-1(V446_D-1) Preds: [C:W-1(V445_D-1) ] Succ: [A:W-1(V447_D-1) ] -NODE_DESCR: A:W-1(V447_D-1) Preds: [A:W-1(V446_D-1) ] Succ: [G:W-1(V448_D-1) ] -NODE_DESCR: G:W-1(V448_D-1) Preds: [A:W-1(V447_D-1) ] Succ: [T:W-1(V449_D-1) ] -NODE_DESCR: T:W-1(V449_D-1) Preds: [G:W-1(V448_D-1) ] Succ: [A:W-1(V450_D-1) ] -NODE_DESCR: A:W-1(V450_D-1) Preds: [T:W-1(V449_D-1) ] Succ: [G:W-1(V451_D-1) ] -NODE_DESCR: G:W-1(V451_D-1) Preds: [A:W-1(V450_D-1) A:W-1(V980_D-1) ] Succ: [T:W-1(V452_D-1) ] -NODE_DESCR: T:W-1(V452_D-1) Preds: [G:W-1(V451_D-1) ] Succ: [G:W-1(V453_D-1) ] -NODE_DESCR: G:W-1(V453_D-1) Preds: [T:W-1(V452_D-1) ] Succ: [T:W-1(V454_D-1) ] -NODE_DESCR: T:W-1(V454_D-1) Preds: [G:W-1(V453_D-1) ] Succ: [C:W-1(V455_D-1) ] -NODE_DESCR: C:W-1(V455_D-1) Preds: [T:W-1(V454_D-1) ] Succ: [T:W-1(V456_D-1) ] -NODE_DESCR: T:W-1(V456_D-1) Preds: [C:W-1(V455_D-1) ] Succ: [T:W-1(V457_D-1) ] -NODE_DESCR: T:W-1(V457_D-1) Preds: [T:W-1(V456_D-1) ] Succ: [A:W-1(V458_D-1) ] -NODE_DESCR: A:W-1(V458_D-1) Preds: [T:W-1(V457_D-1) ] Succ: [A:W-1(V459_D-1) ] -NODE_DESCR: A:W-1(V459_D-1) Preds: [A:W-1(V458_D-1) ] Succ: [C:W-1(V460_D-1) ] -NODE_DESCR: C:W-1(V460_D-1) Preds: [A:W-1(V459_D-1) ] Succ: [T:W-1(V461_D-1) ] -NODE_DESCR: T:W-1(V461_D-1) Preds: [C:W-1(V460_D-1) ] Succ: [C:W-1(V462_D-1) ] -NODE_DESCR: C:W-1(V462_D-1) Preds: [T:W-1(V461_D-1) ] Succ: [A:W-1(V463_D-1) ] -NODE_DESCR: A:W-1(V463_D-1) Preds: [C:W-1(V462_D-1) ] Succ: [G:W-1(V464_D-1) ] -NODE_DESCR: G:W-1(V464_D-1) Preds: [A:W-1(V463_D-1) ] Succ: [G:W-1(V465_D-1) ] -NODE_DESCR: G:W-1(V465_D-1) Preds: [G:W-1(V464_D-1) ] Succ: [A:W-1(V466_D-1) ] -NODE_DESCR: A:W-1(V466_D-1) Preds: [G:W-1(V465_D-1) ] Succ: [G:W-1(V467_D-1) ] -NODE_DESCR: G:W-1(V467_D-1) Preds: [A:W-1(V466_D-1) ] Succ: [A:W-1(V468_D-1) ] -NODE_DESCR: A:W-1(V468_D-1) Preds: [G:W-1(V467_D-1) ] Succ: [T:W-1(V469_D-1) ] -NODE_DESCR: T:W-1(V469_D-1) Preds: [A:W-1(V468_D-1) ] Succ: [C:W-1(V470_D-1) ] -NODE_DESCR: C:W-1(V470_D-1) Preds: [T:W-1(V469_D-1) ] Succ: [A:W-1(V471_D-1) ] -NODE_DESCR: A:W-1(V471_D-1) Preds: [C:W-1(V470_D-1) ] Succ: [T:W-1(V472_D-1) ] -NODE_DESCR: T:W-1(V472_D-1) Preds: [A:W-1(V471_D-1) ] Succ: [G:W-1(V473_D-1) ] -NODE_DESCR: G:W-1(V473_D-1) Preds: [T:W-1(V472_D-1) ] Succ: [G:W-1(V474_D-1) ] -NODE_DESCR: G:W-1(V474_D-1) Preds: [G:W-1(V473_D-1) ] Succ: [T:W-1(V475_D-1) ] -NODE_DESCR: T:W-1(V475_D-1) Preds: [G:W-1(V474_D-1) ] Succ: [A:W-1(V476_D-1) ] -NODE_DESCR: A:W-1(V476_D-1) Preds: [T:W-1(V475_D-1) ] Succ: [G:W-1(V477_D-1) ] -NODE_DESCR: G:W-1(V477_D-1) Preds: [A:W-1(V476_D-1) ] Succ: [G:W-1(V478_D-1) ] -NODE_DESCR: G:W-1(V478_D-1) Preds: [G:W-1(V477_D-1) ] Succ: [G:W-1(V479_D-1) ] -NODE_DESCR: G:W-1(V479_D-1) Preds: [G:W-1(V478_D-1) ] Succ: [A:W-1(V480_D-1) ] -NODE_DESCR: A:W-1(V480_D-1) Preds: [G:W-1(V479_D-1) ] Succ: [A:W-1(V481_D-1) ] -NODE_DESCR: A:W-1(V481_D-1) Preds: [A:W-1(V480_D-1) ] Succ: [G:W-1(V482_D-1) ] -NODE_DESCR: G:W-1(V482_D-1) Preds: [A:W-1(V481_D-1) ] Succ: [G:W-1(V483_D-1) ] -NODE_DESCR: G:W-1(V483_D-1) Preds: [G:W-1(V482_D-1) ] Succ: [G:W-1(V484_D-1) ] -NODE_DESCR: G:W-1(V484_D-1) Preds: [G:W-1(V483_D-1) ] Succ: [G:W-1(V485_D-1) ] -NODE_DESCR: G:W-1(V485_D-1) Preds: [G:W-1(V484_D-1) ] Succ: [T:W-1(V486_D-1) ] -NODE_DESCR: T:W-1(V486_D-1) Preds: [G:W-1(V485_D-1) ] Succ: [C:W-1(V487_D-1) ] -NODE_DESCR: C:W-1(V487_D-1) Preds: [T:W-1(V486_D-1) ] Succ: [A:W-1(V488_D-1) ] -NODE_DESCR: A:W-1(V488_D-1) Preds: [C:W-1(V487_D-1) ] Succ: [G:W-1(V489_D-1) ] -NODE_DESCR: G:W-1(V489_D-1) Preds: [A:W-1(V488_D-1) ] Succ: [G:W-1(V490_D-1) ] -NODE_DESCR: G:W-1(V490_D-1) Preds: [G:W-1(V489_D-1) ] Succ: [C:W-1(V491_D-1) ] -NODE_DESCR: C:W-1(V491_D-1) Preds: [G:W-1(V490_D-1) ] Succ: [C:W-1(V492_D-1) ] -NODE_DESCR: C:W-1(V492_D-1) Preds: [C:W-1(V491_D-1) ] Succ: [A:W-1(V493_D-1) ] -NODE_DESCR: A:W-1(V493_D-1) Preds: [C:W-1(V492_D-1) ] Succ: [C:W-1(V494_D-1) ] -NODE_DESCR: C:W-1(V494_D-1) Preds: [A:W-1(V493_D-1) ] Succ: [T:W-1(V495_D-1) ] -NODE_DESCR: T:W-1(V495_D-1) Preds: [C:W-1(V494_D-1) ] Succ: [T:W-1(V496_D-1) ] -NODE_DESCR: T:W-1(V496_D-1) Preds: [T:W-1(V495_D-1) ] Succ: [C:W-1(V497_D-1) ] -NODE_DESCR: C:W-1(V497_D-1) Preds: [T:W-1(V496_D-1) ] Succ: [A:W-1(V498_D-1) ] -NODE_DESCR: A:W-1(V498_D-1) Preds: [C:W-1(V497_D-1) ] Succ: [C:W-1(V499_D-1) ] -NODE_DESCR: C:W-1(V499_D-1) Preds: [A:W-1(V498_D-1) ] Succ: [A:W-1(V500_D-1) ] -NODE_DESCR: A:W-1(V500_D-1) Preds: [C:W-1(V499_D-1) ] Succ: [A:W-1(V501_D-1) ] -NODE_DESCR: A:W-1(V501_D-1) Preds: [A:W-1(V500_D-1) ] Succ: [G:W-1(V502_D-1) ] -NODE_DESCR: G:W-1(V502_D-1) Preds: [A:W-1(V501_D-1) ] Succ: [G:W-1(V503_D-1) ] -NODE_DESCR: G:W-1(V503_D-1) Preds: [G:W-1(V502_D-1) ] Succ: [A:W-1(V504_D-1) ] -NODE_DESCR: A:W-1(V504_D-1) Preds: [G:W-1(V503_D-1) ] Succ: [G:W-1(V505_D-1) ] -NODE_DESCR: G:W-1(V505_D-1) Preds: [A:W-1(V504_D-1) ] Succ: [C:W-1(V506_D-1) ] -NODE_DESCR: C:W-1(V506_D-1) Preds: [G:W-1(V505_D-1) ] Succ: [A:W-1(V507_D-1) ] -NODE_DESCR: A:W-1(V507_D-1) Preds: [C:W-1(V506_D-1) ] Succ: [G:W-1(V508_D-1) ] -NODE_DESCR: G:W-1(V508_D-1) Preds: [A:W-1(V507_D-1) ] Succ: [A:W-1(V509_D-1) ] -NODE_DESCR: A:W-1(V509_D-1) Preds: [G:W-1(V508_D-1) ] Succ: [G:W-1(V510_D-1) ] -NODE_DESCR: G:W-1(V510_D-1) Preds: [A:W-1(V509_D-1) ] Succ: [T:W-1(V511_D-1) ] -NODE_DESCR: T:W-1(V511_D-1) Preds: [G:W-1(V510_D-1) ] Succ: [T:W-1(V512_D-1) ] -NODE_DESCR: T:W-1(V512_D-1) Preds: [T:W-1(V511_D-1) ] Succ: [A:W-1(V513_D-1) ] -NODE_DESCR: A:W-1(V513_D-1) Preds: [T:W-1(V512_D-1) ] Succ: [G:W-1(V514_D-1) ] -NODE_DESCR: G:W-1(V514_D-1) Preds: [A:W-1(V513_D-1) ] Succ: [G:W-1(V515_D-1) ] -NODE_DESCR: G:W-1(V515_D-1) Preds: [G:W-1(V514_D-1) ] Succ: [A:W-1(V516_D-1) ] -NODE_DESCR: A:W-1(V516_D-1) Preds: [G:W-1(V515_D-1) ] Succ: [A:W-1(V517_D-1) ] -NODE_DESCR: A:W-1(V517_D-1) Preds: [A:W-1(V516_D-1) ] Succ: [G:W-1(V518_D-1) ] -NODE_DESCR: G:W-1(V518_D-1) Preds: [A:W-1(V517_D-1) ] Succ: [C:W-1(V519_D-1) ] -NODE_DESCR: C:W-1(V519_D-1) Preds: [G:W-1(V518_D-1) ] Succ: [T:W-1(V520_D-1) ] -NODE_DESCR: T:W-1(V520_D-1) Preds: [C:W-1(V519_D-1) ] Succ: [C:W-1(V521_D-1) ] -NODE_DESCR: C:W-1(V521_D-1) Preds: [T:W-1(V520_D-1) ] Succ: [C:W-1(V522_D-1) ] -NODE_DESCR: C:W-1(V522_D-1) Preds: [C:W-1(V521_D-1) ] Succ: [C:W-1(V523_D-1) ] -NODE_DESCR: C:W-1(V523_D-1) Preds: [C:W-1(V522_D-1) ] Succ: [T:W-1(V524_D-1) ] -NODE_DESCR: T:W-1(V524_D-1) Preds: [C:W-1(V523_D-1) ] Succ: [G:W-1(V525_D-1) C:W-1(V813_D-1) ] -NODE_DESCR: G:W-1(V525_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V526_D-1) ] -NODE_DESCR: A:W-1(V526_D-1) Preds: [G:W-1(V525_D-1) ] Succ: [G:W-1(V527_D-1) ] -NODE_DESCR: G:W-1(V527_D-1) Preds: [A:W-1(V526_D-1) ] Succ: [C:W-1(V528_D-1) ] -NODE_DESCR: C:W-1(V528_D-1) Preds: [G:W-1(V527_D-1) ] Succ: [A:W-1(V529_D-1) ] -NODE_DESCR: A:W-1(V529_D-1) Preds: [C:W-1(V528_D-1) ] Succ: [C:W-1(V530_D-1) ] -NODE_DESCR: C:W-1(V530_D-1) Preds: [A:W-1(V529_D-1) ] Succ: [T:W-1(V531_D-1) ] -NODE_DESCR: T:W-1(V531_D-1) Preds: [C:W-1(V530_D-1) ] Succ: [C:W-1(V532_D-1) ] -NODE_DESCR: C:W-1(V532_D-1) Preds: [T:W-1(V531_D-1) ] Succ: [T:W-1(V533_D-1) ] -NODE_DESCR: T:W-1(V533_D-1) Preds: [C:W-1(V532_D-1) ] Succ: [G:W-1(V534_D-1) ] -NODE_DESCR: G:W-1(V534_D-1) Preds: [T:W-1(V533_D-1) ] Succ: [A:W-1(V535_D-1) ] -NODE_DESCR: A:W-1(V535_D-1) Preds: [G:W-1(V534_D-1) ] Succ: [A:W-1(V536_D-1) ] -NODE_DESCR: A:W-1(V536_D-1) Preds: [A:W-1(V535_D-1) ] Succ: [C:W-1(V537_D-1) ] -NODE_DESCR: C:W-1(V537_D-1) Preds: [A:W-1(V536_D-1) ] Succ: [C:W-1(V538_D-1) ] -NODE_DESCR: C:W-1(V538_D-1) Preds: [C:W-1(V537_D-1) ] Succ: [C:W-1(V539_D-1) ] -NODE_DESCR: C:W-1(V539_D-1) Preds: [C:W-1(V538_D-1) ] Succ: [T:W-1(V540_D-1) ] -NODE_DESCR: T:W-1(V540_D-1) Preds: [C:W-1(V539_D-1) ] Succ: [G:W-1(V541_D-1) ] -NODE_DESCR: G:W-1(V541_D-1) Preds: [T:W-1(V540_D-1) ] Succ: [T:W-1(V542_D-1) ] -NODE_DESCR: T:W-1(V542_D-1) Preds: [G:W-1(V541_D-1) ] Succ: [G:W-1(V543_D-1) ] -NODE_DESCR: G:W-1(V543_D-1) Preds: [T:W-1(V542_D-1) ] Succ: [A:W-1(V544_D-1) ] -NODE_DESCR: A:W-1(V544_D-1) Preds: [G:W-1(V543_D-1) ] Succ: [G:W-1(V545_D-1) ] -NODE_DESCR: G:W-1(V545_D-1) Preds: [A:W-1(V544_D-1) ] Succ: [G:W-1(V546_D-1) ] -NODE_DESCR: G:W-1(V546_D-1) Preds: [G:W-1(V545_D-1) ] Succ: [C:W-1(V547_D-1) ] -NODE_DESCR: C:W-1(V547_D-1) Preds: [G:W-1(V546_D-1) ] Succ: [A:W-1(V548_D-1) ] -NODE_DESCR: A:W-1(V548_D-1) Preds: [C:W-1(V547_D-1) ] Succ: [A:W-1(V549_D-1) ] -NODE_DESCR: A:W-1(V549_D-1) Preds: [A:W-1(V548_D-1) A:W-1(V836_D-1) ] Succ: [G:W-1(V550_D-1) ] -NODE_DESCR: G:W-1(V550_D-1) Preds: [A:W-1(V549_D-1) ] Succ: [T:W-1(V551_D-1) ] -NODE_DESCR: T:W-1(V551_D-1) Preds: [G:W-1(V550_D-1) ] Succ: [C:W-1(V552_D-1) ] -NODE_DESCR: C:W-1(V552_D-1) Preds: [T:W-1(V551_D-1) ] Succ: [C:W-1(V553_D-1) ] -NODE_DESCR: C:W-1(V553_D-1) Preds: [C:W-1(V552_D-1) ] Succ: [A:W-1(V554_D-1) ] -NODE_DESCR: A:W-1(V554_D-1) Preds: [C:W-1(V553_D-1) ] Succ: [C:W-1(V555_D-1) ] -NODE_DESCR: C:W-1(V555_D-1) Preds: [A:W-1(V554_D-1) ] Succ: [C:W-1(V556_D-1) ] -NODE_DESCR: C:W-1(V556_D-1) Preds: [C:W-1(V555_D-1) ] Succ: [A:W-1(V557_D-1) ] -NODE_DESCR: A:W-1(V557_D-1) Preds: [C:W-1(V556_D-1) ] Succ: [C:W-1(V558_D-1) ] -NODE_DESCR: C:W-1(V558_D-1) Preds: [A:W-1(V557_D-1) ] Succ: [C:W-1(V559_D-1) ] -NODE_DESCR: C:W-1(V559_D-1) Preds: [C:W-1(V558_D-1) ] Succ: [A:W-1(V560_D-1) ] -NODE_DESCR: A:W-1(V560_D-1) Preds: [C:W-1(V559_D-1) ] Succ: [G:W-1(V561_D-1) ] -NODE_DESCR: G:W-1(V561_D-1) Preds: [A:W-1(V560_D-1) ] Succ: [C:W-1(V562_D-1) ] -NODE_DESCR: C:W-1(V562_D-1) Preds: [G:W-1(V561_D-1) ] Succ: [G:W-1(V563_D-1) ] -NODE_DESCR: G:W-1(V563_D-1) Preds: [C:W-1(V562_D-1) ] Succ: [T:W-1(V564_D-1) ] -NODE_DESCR: T:W-1(V564_D-1) Preds: [G:W-1(V563_D-1) ] Succ: [A:W-1(V565_D-1) ] -NODE_DESCR: A:W-1(V565_D-1) Preds: [T:W-1(V564_D-1) ] Succ: [T:W-1(V566_D-1) ] -NODE_DESCR: T:W-1(V566_D-1) Preds: [A:W-1(V565_D-1) ] Succ: [C:W-1(V567_D-1) ] -NODE_DESCR: C:W-1(V567_D-1) Preds: [T:W-1(V566_D-1) ] Succ: [T:W-1(V568_D-1) ] -NODE_DESCR: T:W-1(V568_D-1) Preds: [C:W-1(V567_D-1) ] Succ: [A:W-1(V569_D-1) ] -NODE_DESCR: A:W-1(V569_D-1) Preds: [T:W-1(V568_D-1) ] Succ: [G:W-1(V570_D-1) ] -NODE_DESCR: G:W-1(V570_D-1) Preds: [A:W-1(V569_D-1) ] Succ: [A:W-1(V571_D-1) ] -NODE_DESCR: A:W-1(V571_D-1) Preds: [G:W-1(V570_D-1) ] Succ: [C:W-1(V572_D-1) ] -NODE_DESCR: C:W-1(V572_D-1) Preds: [A:W-1(V571_D-1) ] Succ: [C:W-1(V573_D-1) ] -NODE_DESCR: C:W-1(V573_D-1) Preds: [C:W-1(V572_D-1) ] Succ: [C:W-1(V574_D-1) ] -NODE_DESCR: C:W-1(V574_D-1) Preds: [C:W-1(V573_D-1) ] Succ: [A:W-1(V575_D-1) ] -NODE_DESCR: A:W-1(V575_D-1) Preds: [C:W-1(V574_D-1) ] Succ: [G:W-1(V576_D-1) ] -NODE_DESCR: G:W-1(V576_D-1) Preds: [A:W-1(V575_D-1) ] Succ: [G:W-1(V577_D-1) ] -NODE_DESCR: G:W-1(V577_D-1) Preds: [G:W-1(V576_D-1) ] Succ: [C:W-1(V578_D-1) ] -NODE_DESCR: C:W-1(V578_D-1) Preds: [G:W-1(V577_D-1) ] Succ: [C:W-1(V579_D-1) ] -NODE_DESCR: C:W-1(V579_D-1) Preds: [C:W-1(V578_D-1) ] Succ: [A:W-1(V580_D-1) ] -NODE_DESCR: A:W-1(V580_D-1) Preds: [C:W-1(V579_D-1) ] Succ: [T:W-1(V581_D-1) ] -NODE_DESCR: T:W-1(V581_D-1) Preds: [A:W-1(V580_D-1) ] Succ: [C:W-1(V582_D-1) ] -NODE_DESCR: C:W-1(V582_D-1) Preds: [T:W-1(V581_D-1) ] Succ: [T:W-1(V583_D-1) ] -NODE_DESCR: T:W-1(V583_D-1) Preds: [C:W-1(V582_D-1) ] Succ: [A:W-1(V584_D-1) ] -NODE_DESCR: A:W-1(V584_D-1) Preds: [T:W-1(V583_D-1) ] Succ: [A:W-1(V585_D-1) ] -NODE_DESCR: A:W-1(V585_D-1) Preds: [A:W-1(V584_D-1) ] Succ: [T:W-1(V586_D-1) ] -NODE_DESCR: T:W-1(V586_D-1) Preds: [A:W-1(V585_D-1) ] Succ: [A:W-1(V587_D-1) ] -NODE_DESCR: A:W-1(V587_D-1) Preds: [T:W-1(V586_D-1) ] Succ: [A:W-1(V588_D-1) ] -NODE_DESCR: A:W-1(V588_D-1) Preds: [A:W-1(V587_D-1) ] Succ: [A:W-1(V589_D-1) ] -NODE_DESCR: A:W-1(V589_D-1) Preds: [A:W-1(V588_D-1) ] Succ: [G:W-1(V590_D-1) ] -NODE_DESCR: G:W-1(V590_D-1) Preds: [A:W-1(V589_D-1) ] Succ: [G:W-1(V591_D-1) ] -NODE_DESCR: G:W-1(V591_D-1) Preds: [G:W-1(V590_D-1) ] Succ: [A:W-1(V592_D-1) ] -NODE_DESCR: A:W-1(V592_D-1) Preds: [G:W-1(V591_D-1) ] Succ: [A:W-1(V593_D-1) ] -NODE_DESCR: A:W-1(V593_D-1) Preds: [A:W-1(V592_D-1) ] Succ: [A:W-1(V594_D-1) ] -NODE_DESCR: A:W-1(V594_D-1) Preds: [A:W-1(V593_D-1) ] Succ: [A:W-1(V595_D-1) ] -NODE_DESCR: A:W-1(V595_D-1) Preds: [A:W-1(V594_D-1) ] Succ: [C:W-1(V596_D-1) ] -NODE_DESCR: C:W-1(V596_D-1) Preds: [A:W-1(V595_D-1) ] Succ: [T:W-1(V597_D-1) ] -NODE_DESCR: T:W-1(V597_D-1) Preds: [C:W-1(V596_D-1) ] Succ: [G:W-1(V598_D-1) ] -NODE_DESCR: G:W-1(V598_D-1) Preds: [T:W-1(V597_D-1) ] Succ: [C:W-1(V599_D-1) ] -NODE_DESCR: C:W-1(V599_D-1) Preds: [G:W-1(V598_D-1) ] Succ: [A:W-1(V600_D-1) ] -NODE_DESCR: A:W-1(V600_D-1) Preds: [C:W-1(V599_D-1) ] Succ: [T:W-1(V601_D-1) ] -NODE_DESCR: T:W-1(V601_D-1) Preds: [A:W-1(V600_D-1) ] Succ: [C:W-1(V602_D-1) ] -NODE_DESCR: C:W-1(V602_D-1) Preds: [T:W-1(V601_D-1) ] Succ: [T:W-1(V603_D-1) ] -NODE_DESCR: T:W-1(V603_D-1) Preds: [C:W-1(V602_D-1) ] Succ: [T:W-1(V604_D-1) ] -NODE_DESCR: T:W-1(V604_D-1) Preds: [T:W-1(V603_D-1) ] Succ: [T:W-1(V605_D-1) ] -NODE_DESCR: T:W-1(V605_D-1) Preds: [T:W-1(V604_D-1) ] Succ: [G:W-1(V606_D-1) ] -NODE_DESCR: G:W-1(V606_D-1) Preds: [T:W-1(V605_D-1) ] Succ: [C:W-1(V607_D-1) ] -NODE_DESCR: C:W-1(V607_D-1) Preds: [G:W-1(V606_D-1) ] Succ: [C:W-1(V608_D-1) ] -NODE_DESCR: C:W-1(V608_D-1) Preds: [C:W-1(V607_D-1) ] Succ: [C:W-1(V609_D-1) ] -NODE_DESCR: C:W-1(V609_D-1) Preds: [C:W-1(V608_D-1) ] Succ: [A:W-1(V610_D-1) ] -NODE_DESCR: A:W-1(V610_D-1) Preds: [C:W-1(V609_D-1) ] Succ: [C:W-1(V611_D-1) ] -NODE_DESCR: C:W-1(V611_D-1) Preds: [A:W-1(V610_D-1) ] Succ: [A:W-1(V612_D-1) ] -NODE_DESCR: A:W-1(V612_D-1) Preds: [C:W-1(V611_D-1) ] Succ: [T:W-1(V613_D-1) ] -NODE_DESCR: T:W-1(V613_D-1) Preds: [A:W-1(V612_D-1) ] Succ: [G:W-1(V614_D-1) ] -NODE_DESCR: G:W-1(V614_D-1) Preds: [T:W-1(V613_D-1) ] Succ: [A:W-1(V615_D-1) ] -NODE_DESCR: A:W-1(V615_D-1) Preds: [G:W-1(V614_D-1) ] Succ: [T:W-1(V616_D-1) ] -NODE_DESCR: T:W-1(V616_D-1) Preds: [A:W-1(V615_D-1) ] Succ: [G:W-1(V617_D-1) ] -NODE_DESCR: G:W-1(V617_D-1) Preds: [T:W-1(V616_D-1) ] Succ: [C:W-1(V618_D-1) ] -NODE_DESCR: C:W-1(V618_D-1) Preds: [G:W-1(V617_D-1) ] Succ: [T:W-1(V619_D-1) ] -NODE_DESCR: T:W-1(V619_D-1) Preds: [C:W-1(V618_D-1) ] Succ: [T:W-1(V620_D-1) ] -NODE_DESCR: T:W-1(V620_D-1) Preds: [T:W-1(V619_D-1) ] Succ: [G:W-1(V621_D-1) ] -NODE_DESCR: G:W-1(V621_D-1) Preds: [T:W-1(V620_D-1) ] Succ: [G:W-1(V622_D-1) ] -NODE_DESCR: G:W-1(V622_D-1) Preds: [G:W-1(V621_D-1) ] Succ: [T:W-1(V623_D-1) ] -NODE_DESCR: T:W-1(V623_D-1) Preds: [G:W-1(V622_D-1) ] Succ: [T:W-1(V624_D-1) ] -NODE_DESCR: T:W-1(V624_D-1) Preds: [T:W-1(V623_D-1) ] Succ: [A:W-1(V625_D-1) ] -NODE_DESCR: A:W-1(V625_D-1) Preds: [T:W-1(V624_D-1) ] Succ: [A:W-1(V626_D-1) ] -NODE_DESCR: A:W-1(V626_D-1) Preds: [A:W-1(V625_D-1) ] Succ: [G:W-1(V627_D-1) ] -NODE_DESCR: G:W-1(V627_D-1) Preds: [A:W-1(V626_D-1) ] Succ: [A:W-1(V628_D-1) ] -NODE_DESCR: A:W-1(V628_D-1) Preds: [G:W-1(V627_D-1) ] Succ: [C:W-1(V629_D-1) ] -NODE_DESCR: C:W-1(V629_D-1) Preds: [A:W-1(V628_D-1) ] Succ: [A:W-1(V630_D-1) ] -NODE_DESCR: A:W-1(V630_D-1) Preds: [C:W-1(V629_D-1) ] Succ: [A:W-1(V631_D-1) ] -NODE_DESCR: A:W-1(V631_D-1) Preds: [A:W-1(V630_D-1) ] Succ: [G:W-1(V632_D-1) ] -NODE_DESCR: G:W-1(V632_D-1) Preds: [A:W-1(V631_D-1) ] Succ: [G:W-1(V633_D-1) ] -NODE_DESCR: G:W-1(V633_D-1) Preds: [G:W-1(V632_D-1) ] Succ: [G:W-1(V634_D-1) ] -NODE_DESCR: G:W-1(V634_D-1) Preds: [G:W-1(V633_D-1) ] Succ: [G:W-1(V635_D-1) ] -NODE_DESCR: G:W-1(V635_D-1) Preds: [G:W-1(V634_D-1) ] Succ: [T:W-1(V636_D-1) ] -NODE_DESCR: T:W-1(V636_D-1) Preds: [G:W-1(V635_D-1) ] Succ: [T:W-1(V637_D-1) ] -NODE_DESCR: T:W-1(V637_D-1) Preds: [T:W-1(V636_D-1) ] Succ: [A:W-1(V638_D-1) ] -NODE_DESCR: A:W-1(V638_D-1) Preds: [T:W-1(V637_D-1) ] Succ: [G:W-1(V639_D-1) ] -NODE_DESCR: G:W-1(V639_D-1) Preds: [A:W-1(V638_D-1) ] Succ: [T:W-1(V640_D-1) ] -NODE_DESCR: T:W-1(V640_D-1) Preds: [G:W-1(V639_D-1) ] Succ: [G:W-1(V641_D-1) ] -NODE_DESCR: G:W-1(V641_D-1) Preds: [T:W-1(V640_D-1) ] Succ: [A:W-1(V642_D-1) ] -NODE_DESCR: A:W-1(V642_D-1) Preds: [G:W-1(V641_D-1) ] Succ: [C:W-1(V643_D-1) ] -NODE_DESCR: C:W-1(V643_D-1) Preds: [A:W-1(V642_D-1) ] Succ: [A:W-1(V644_D-1) ] -NODE_DESCR: A:W-1(V644_D-1) Preds: [C:W-1(V643_D-1) ] Succ: [A:W-1(V645_D-1) ] -NODE_DESCR: A:W-1(V645_D-1) Preds: [A:W-1(V644_D-1) ] Succ: [A:W-1(V646_D-1) ] -NODE_DESCR: A:W-1(V646_D-1) Preds: [A:W-1(V645_D-1) ] Succ: [G:W-1(V647_D-1) ] -NODE_DESCR: G:W-1(V647_D-1) Preds: [A:W-1(V646_D-1) ] Succ: [T:W-1(V648_D-1) ] -NODE_DESCR: T:W-1(V648_D-1) Preds: [G:W-1(V647_D-1) ] Succ: [A:W-1(V649_D-1) ] -NODE_DESCR: A:W-1(V649_D-1) Preds: [T:W-1(V648_D-1) ] Succ: [A:W-1(V650_D-1) ] -NODE_DESCR: A:W-1(V650_D-1) Preds: [A:W-1(V649_D-1) ] Succ: [A:W-1(V651_D-1) ] -NODE_DESCR: A:W-1(V651_D-1) Preds: [A:W-1(V650_D-1) ] Succ: [G:W-1(V652_D-1) ] -NODE_DESCR: G:W-1(V652_D-1) Preds: [A:W-1(V651_D-1) ] Succ: [A:W-1(V653_D-1) ] -NODE_DESCR: A:W-1(V653_D-1) Preds: [G:W-1(V652_D-1) ] Succ: [G:W-1(V654_D-1) ] -NODE_DESCR: G:W-1(V654_D-1) Preds: [A:W-1(V653_D-1) ] Succ: [G:W-1(V655_D-1) ] -NODE_DESCR: G:W-1(V655_D-1) Preds: [G:W-1(V654_D-1) ] Succ: [A:W-1(V656_D-1) ] -NODE_DESCR: A:W-1(V656_D-1) Preds: [G:W-1(V655_D-1) ] Succ: [T:W-1(V657_D-1) ] -NODE_DESCR: T:W-1(V657_D-1) Preds: [A:W-1(V656_D-1) ] Succ: [G:W-1(V658_D-1) ] -NODE_DESCR: G:W-1(V658_D-1) Preds: [T:W-1(V657_D-1) ] Succ: [A:W-1(V659_D-1) ] -NODE_DESCR: A:W-1(V659_D-1) Preds: [G:W-1(V658_D-1) ] Succ: [C:W-1(V660_D-1) ] -NODE_DESCR: C:W-1(V660_D-1) Preds: [A:W-1(V659_D-1) ] Succ: [A:W-1(V661_D-1) ] -NODE_DESCR: A:W-1(V661_D-1) Preds: [C:W-1(V660_D-1) ] Succ: [G:W-1(V662_D-1) ] -NODE_DESCR: G:W-1(V662_D-1) Preds: [A:W-1(V661_D-1) ] Succ: [A:W-1(V663_D-1) ] -NODE_DESCR: A:W-1(V663_D-1) Preds: [G:W-1(V662_D-1) ] Succ: [C:W-1(V664_D-1) ] -NODE_DESCR: C:W-1(V664_D-1) Preds: [A:W-1(V663_D-1) ] Succ: [T:W-1(V665_D-1) ] -NODE_DESCR: T:W-1(V665_D-1) Preds: [C:W-1(V664_D-1) ] Succ: [C:W-1(V666_D-1) ] -NODE_DESCR: C:W-1(V666_D-1) Preds: [T:W-1(V665_D-1) ] Succ: [T:W-1(V667_D-1) ] -NODE_DESCR: T:W-1(V667_D-1) Preds: [C:W-1(V666_D-1) ] Succ: [C:W-1(V668_D-1) ] -NODE_DESCR: C:W-1(V668_D-1) Preds: [T:W-1(V667_D-1) ] Succ: [T:W-1(V669_D-1) ] -NODE_DESCR: T:W-1(V669_D-1) Preds: [C:W-1(V668_D-1) ] Succ: [A:W-1(V670_D-1) ] -NODE_DESCR: A:W-1(V670_D-1) Preds: [T:W-1(V669_D-1) ] Succ: [A:W-1(V671_D-1) ] -NODE_DESCR: A:W-1(V671_D-1) Preds: [A:W-1(V670_D-1) ] Succ: [G:W-1(V672_D-1) ] -NODE_DESCR: G:W-1(V672_D-1) Preds: [A:W-1(V671_D-1) ] Succ: [G:W-1(V673_D-1) ] -NODE_DESCR: G:W-1(V673_D-1) Preds: [G:W-1(V672_D-1) ] Succ: [G:W-1(V674_D-1) ] -NODE_DESCR: G:W-1(V674_D-1) Preds: [G:W-1(V673_D-1) ] Succ: [A:W-1(V675_D-1) ] -NODE_DESCR: A:W-1(V675_D-1) Preds: [G:W-1(V674_D-1) ] Succ: [C:W-1(V676_D-1) ] -NODE_DESCR: C:W-1(V676_D-1) Preds: [A:W-1(V675_D-1) ] Succ: [A:W-1(V677_D-1) ] -NODE_DESCR: A:W-1(V677_D-1) Preds: [C:W-1(V676_D-1) ] Succ: [T:W-1(V678_D-1) ] -NODE_DESCR: T:W-1(V678_D-1) Preds: [A:W-1(V677_D-1) ] Succ: [A:W-1(V679_D-1) ] -NODE_DESCR: A:W-1(V679_D-1) Preds: [T:W-1(V678_D-1) ] Succ: [T:W-1(V680_D-1) ] -NODE_DESCR: T:W-1(V680_D-1) Preds: [A:W-1(V679_D-1) ] Succ: [G:W-1(V681_D-1) ] -NODE_DESCR: G:W-1(V681_D-1) Preds: [T:W-1(V680_D-1) ] Succ: [G:W-1(V682_D-1) ] -NODE_DESCR: G:W-1(V682_D-1) Preds: [G:W-1(V681_D-1) ] Succ: [G:W-1(V683_D-1) ] -NODE_DESCR: G:W-1(V683_D-1) Preds: [G:W-1(V682_D-1) ] Succ: [A:W-1(V684_D-1) ] -NODE_DESCR: A:W-1(V684_D-1) Preds: [G:W-1(V683_D-1) ] Succ: [G:W-1(V685_D-1) ] -NODE_DESCR: G:W-1(V685_D-1) Preds: [A:W-1(V684_D-1) ] Succ: [C:W-1(V686_D-1) ] -NODE_DESCR: C:W-1(V686_D-1) Preds: [G:W-1(V685_D-1) ] Succ: [T:W-1(V687_D-1) ] -NODE_DESCR: T:W-1(V687_D-1) Preds: [C:W-1(V686_D-1) ] Succ: [A:W-1(V688_D-1) ] -NODE_DESCR: A:W-1(V688_D-1) Preds: [T:W-1(V687_D-1) ] Succ: [C:W-1(V689_D-1) ] -NODE_DESCR: C:W-1(V689_D-1) Preds: [A:W-1(V688_D-1) ] Succ: [A:W-1(V690_D-1) ] -NODE_DESCR: A:W-1(V690_D-1) Preds: [C:W-1(V689_D-1) ] Succ: [T:W-1(V691_D-1) ] -NODE_DESCR: T:W-1(V691_D-1) Preds: [A:W-1(V690_D-1) ] Succ: [A:W-1(V692_D-1) ] -NODE_DESCR: A:W-1(V692_D-1) Preds: [T:W-1(V691_D-1) ] Succ: [G:W-1(V693_D-1) ] -NODE_DESCR: G:W-1(V693_D-1) Preds: [A:W-1(V692_D-1) ] Succ: [C:W-1(V694_D-1) ] -NODE_DESCR: C:W-1(V694_D-1) Preds: [G:W-1(V693_D-1) ] Succ: [C:W-1(V695_D-1) ] -NODE_DESCR: C:W-1(V695_D-1) Preds: [C:W-1(V694_D-1) ] Succ: [A:W-1(V696_D-1) ] -NODE_DESCR: A:W-1(V696_D-1) Preds: [C:W-1(V695_D-1) ] Succ: [G:W-1(V697_D-1) ] -NODE_DESCR: G:W-1(V697_D-1) Preds: [A:W-1(V696_D-1) ] Succ: [C:W-1(V698_D-1) ] -NODE_DESCR: C:W-1(V698_D-1) Preds: [G:W-1(V697_D-1) ] Succ: [C:W-1(V699_D-1) ] -NODE_DESCR: C:W-1(V699_D-1) Preds: [C:W-1(V698_D-1) ] Succ: [C:W-1(V700_D-1) ] -NODE_DESCR: C:W-1(V700_D-1) Preds: [C:W-1(V699_D-1) ] Succ: [C:W-1(V701_D-1) ] -NODE_DESCR: C:W-1(V701_D-1) Preds: [C:W-1(V700_D-1) ] Succ: [G:W-1(V702_D-1) ] -NODE_DESCR: G:W-1(V702_D-1) Preds: [C:W-1(V701_D-1) ] Succ: [T:W-1(V703_D-1) ] -NODE_DESCR: T:W-1(V703_D-1) Preds: [G:W-1(V702_D-1) ] Succ: [G:W-1(V704_D-1) ] -NODE_DESCR: G:W-1(V704_D-1) Preds: [T:W-1(V703_D-1) ] Succ: [G:W-1(V705_D-1) ] -NODE_DESCR: G:W-1(V705_D-1) Preds: [G:W-1(V704_D-1) ] Succ: [A:W-1(V706_D-1) ] -NODE_DESCR: A:W-1(V706_D-1) Preds: [G:W-1(V705_D-1) ] Succ: [G:W-1(V707_D-1) ] -NODE_DESCR: G:W-1(V707_D-1) Preds: [A:W-1(V706_D-1) ] Succ: [G:W-1(V708_D-1) ] -NODE_DESCR: G:W-1(V708_D-1) Preds: [G:W-1(V707_D-1) ] Succ: [G:W-1(V709_D-1) ] -NODE_DESCR: G:W-1(V709_D-1) Preds: [G:W-1(V708_D-1) ] Succ: [A:W-1(V710_D-1) ] -NODE_DESCR: A:W-1(V710_D-1) Preds: [G:W-1(V709_D-1) ] Succ: [G:W-1(V711_D-1) ] -NODE_DESCR: G:W-1(V711_D-1) Preds: [A:W-1(V710_D-1) ] Succ: [C:W-1(V712_D-1) ] -NODE_DESCR: C:W-1(V712_D-1) Preds: [G:W-1(V711_D-1) ] Succ: [C:W-1(V713_D-1) ] -NODE_DESCR: C:W-1(V713_D-1) Preds: [C:W-1(V712_D-1) ] Succ: [A:W-1(V714_D-1) ] -NODE_DESCR: A:W-1(V714_D-1) Preds: [C:W-1(V713_D-1) ] Succ: [C:W-1(V715_D-1) ] -NODE_DESCR: C:W-1(V715_D-1) Preds: [A:W-1(V714_D-1) ] Succ: [C:W-1(V716_D-1) ] -NODE_DESCR: C:W-1(V716_D-1) Preds: [C:W-1(V715_D-1) ] Succ: [A:W-1(V717_D-1) ] -NODE_DESCR: A:W-1(V717_D-1) Preds: [C:W-1(V716_D-1) C:W-1(V812_D-1) ] Succ: [G:W-1(V718_D-1) ] -NODE_DESCR: G:W-1(V718_D-1) Preds: [A:W-1(V717_D-1) ] Succ: [C:W-1(V719_D-1) ] -NODE_DESCR: C:W-1(V719_D-1) Preds: [G:W-1(V718_D-1) ] Succ: [C:W-1(V720_D-1) ] -NODE_DESCR: C:W-1(V720_D-1) Preds: [C:W-1(V719_D-1) ] Succ: [A:W-1(V721_D-1) ] -NODE_DESCR: A:W-1(V721_D-1) Preds: [C:W-1(V720_D-1) ] Succ: [C:W-1(V722_D-1) ] -NODE_DESCR: C:W-1(V722_D-1) Preds: [A:W-1(V721_D-1) ] Succ: [A:W-1(V723_D-1) ] -NODE_DESCR: A:W-1(V723_D-1) Preds: [C:W-1(V722_D-1) ] Succ: [G:W-1(V724_D-1) ] -NODE_DESCR: G:W-1(V724_D-1) Preds: [A:W-1(V723_D-1) ] Succ: [G:W-1(V725_D-1) ] -NODE_DESCR: G:W-1(V725_D-1) Preds: [G:W-1(V724_D-1) ] Succ: [T:W-1(V726_D-1) ] -NODE_DESCR: T:W-1(V726_D-1) Preds: [G:W-1(V725_D-1) ] Succ: [A:W-1(V727_D-1) ] -NODE_DESCR: A:W-1(V727_D-1) Preds: [T:W-1(V726_D-1) ] Succ: [C:W-1(V728_D-1) ] -NODE_DESCR: C:W-1(V728_D-1) Preds: [A:W-1(V727_D-1) ] Succ: [C:W-1(V729_D-1) ] -NODE_DESCR: C:W-1(V729_D-1) Preds: [C:W-1(V728_D-1) ] Succ: [T:W-1(V730_D-1) ] -NODE_DESCR: T:W-1(V730_D-1) Preds: [C:W-1(V729_D-1) ] Succ: [G:W-1(V731_D-1) ] -NODE_DESCR: G:W-1(V731_D-1) Preds: [T:W-1(V730_D-1) ] Succ: [A:W-1(V732_D-1) ] -NODE_DESCR: A:W-1(V732_D-1) Preds: [G:W-1(V731_D-1) ] Succ: [T:W-1(V733_D-1) ] -NODE_DESCR: T:W-1(V733_D-1) Preds: [A:W-1(V732_D-1) ] Succ: [G:W-1(V734_D-1) ] -NODE_DESCR: G:W-1(V734_D-1) Preds: [T:W-1(V733_D-1) ] Succ: [G:W-1(V735_D-1) ] -NODE_DESCR: G:W-1(V735_D-1) Preds: [G:W-1(V734_D-1) ] Succ: [A:W-1(V736_D-1) ] -NODE_DESCR: A:W-1(V736_D-1) Preds: [G:W-1(V735_D-1) ] Succ: [A:W-1(V737_D-1) ] -NODE_DESCR: A:W-1(V737_D-1) Preds: [A:W-1(V736_D-1) ] Succ: [A:W-1(V738_D-1) ] -NODE_DESCR: A:W-1(V738_D-1) Preds: [A:W-1(V737_D-1) ] Succ: [T:W-1(V739_D-1) ] -NODE_DESCR: T:W-1(V739_D-1) Preds: [A:W-1(V738_D-1) ] Succ: [G:W-1(V740_D-1) ] -NODE_DESCR: G:W-1(V740_D-1) Preds: [T:W-1(V739_D-1) ] Succ: [C:W-1(V741_D-1) ] -NODE_DESCR: C:W-1(V741_D-1) Preds: [G:W-1(V740_D-1) ] Succ: [C:W-1(V742_D-1) ] -NODE_DESCR: C:W-1(V742_D-1) Preds: [C:W-1(V741_D-1) ] Succ: [G:W-1(V743_D-1) ] -NODE_DESCR: G:W-1(V743_D-1) Preds: [C:W-1(V742_D-1) ] Succ: [G:W-1(V744_D-1) ] -NODE_DESCR: G:W-1(V744_D-1) Preds: [G:W-1(V743_D-1) ] Succ: [C:W-1(V745_D-1) ] -NODE_DESCR: C:W-1(V745_D-1) Preds: [G:W-1(V744_D-1) ] Succ: [T:W-1(V746_D-1) ] -NODE_DESCR: T:W-1(V746_D-1) Preds: [C:W-1(V745_D-1) ] Succ: [C:W-1(V747_D-1) ] -NODE_DESCR: C:W-1(V747_D-1) Preds: [T:W-1(V746_D-1) ] Succ: [A:W-1(V748_D-1) ] -NODE_DESCR: A:W-1(V748_D-1) Preds: [C:W-1(V747_D-1) ] Succ: [C:W-1(V749_D-1) ] -NODE_DESCR: C:W-1(V749_D-1) Preds: [A:W-1(V748_D-1) ] Succ: [T:W-1(V750_D-1) ] -NODE_DESCR: T:W-1(V750_D-1) Preds: [C:W-1(V749_D-1) ] Succ: [T:W-1(V751_D-1) ] -NODE_DESCR: T:W-1(V751_D-1) Preds: [T:W-1(V750_D-1) ] Succ: [C:W-1(V752_D-1) ] -NODE_DESCR: C:W-1(V752_D-1) Preds: [T:W-1(V751_D-1) ] Succ: [C:W-1(V753_D-1) ] -NODE_DESCR: C:W-1(V753_D-1) Preds: [C:W-1(V752_D-1) ] Succ: [T:W-1(V754_D-1) ] -NODE_DESCR: T:W-1(V754_D-1) Preds: [C:W-1(V753_D-1) ] Succ: [G:W-1(V755_D-1) ] -NODE_DESCR: G:W-1(V755_D-1) Preds: [T:W-1(V754_D-1) ] Succ: [T:W-1(V756_D-1) ] -NODE_DESCR: T:W-1(V756_D-1) Preds: [G:W-1(V755_D-1) ] Succ: [G:W-1(V757_D-1) ] -NODE_DESCR: G:W-1(V757_D-1) Preds: [T:W-1(V756_D-1) ] Succ: [A:W-1(V758_D-1) ] -NODE_DESCR: A:W-1(V758_D-1) Preds: [G:W-1(V757_D-1) ] Succ: [] -NODE_DESCR: GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) Preds: [] Succ: [A:W-1(V787_D-1) ] -NODE_DESCR: A:W-1(V787_D-1) Preds: [GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) ] Succ: [A:W-1(V788_D-1) ] -NODE_DESCR: A:W-1(V788_D-1) Preds: [A:W-1(V787_D-1) ] Succ: [C:W-1(V789_D-1) ] -NODE_DESCR: C:W-1(V789_D-1) Preds: [A:W-1(V788_D-1) ] Succ: [C:W-1(V790_D-1) ] -NODE_DESCR: C:W-1(V790_D-1) Preds: [C:W-1(V789_D-1) ] Succ: [C:W-1(V791_D-1) ] -NODE_DESCR: C:W-1(V791_D-1) Preds: [C:W-1(V790_D-1) ] Succ: [A:W-1(V792_D-1) ] -NODE_DESCR: A:W-1(V792_D-1) Preds: [C:W-1(V791_D-1) ] Succ: [G:W-1(V793_D-1) ] -NODE_DESCR: G:W-1(V793_D-1) Preds: [A:W-1(V792_D-1) ] Succ: [C:W-1(V794_D-1) ] -NODE_DESCR: C:W-1(V794_D-1) Preds: [G:W-1(V793_D-1) ] Succ: [C:W-1(V795_D-1) ] -NODE_DESCR: C:W-1(V795_D-1) Preds: [C:W-1(V794_D-1) ] Succ: [C:W-1(V796_D-1) ] -NODE_DESCR: C:W-1(V796_D-1) Preds: [C:W-1(V795_D-1) ] Succ: [C:W-1(V797_D-1) ] -NODE_DESCR: C:W-1(V797_D-1) Preds: [C:W-1(V796_D-1) ] Succ: [G:W-1(V798_D-1) ] -NODE_DESCR: G:W-1(V798_D-1) Preds: [C:W-1(V797_D-1) ] Succ: [T:W-1(V799_D-1) ] -NODE_DESCR: T:W-1(V799_D-1) Preds: [G:W-1(V798_D-1) ] Succ: [G:W-1(V800_D-1) ] -NODE_DESCR: G:W-1(V800_D-1) Preds: [T:W-1(V799_D-1) ] Succ: [G:W-1(V801_D-1) ] -NODE_DESCR: G:W-1(V801_D-1) Preds: [G:W-1(V800_D-1) ] Succ: [A:W-1(V802_D-1) ] -NODE_DESCR: A:W-1(V802_D-1) Preds: [G:W-1(V801_D-1) ] Succ: [G:W-1(V803_D-1) ] -NODE_DESCR: G:W-1(V803_D-1) Preds: [A:W-1(V802_D-1) ] Succ: [G:W-1(V804_D-1) ] -NODE_DESCR: G:W-1(V804_D-1) Preds: [G:W-1(V803_D-1) ] Succ: [G:W-1(V805_D-1) ] -NODE_DESCR: G:W-1(V805_D-1) Preds: [G:W-1(V804_D-1) ] Succ: [A:W-1(V806_D-1) ] -NODE_DESCR: A:W-1(V806_D-1) Preds: [G:W-1(V805_D-1) ] Succ: [G:W-1(V807_D-1) ] -NODE_DESCR: G:W-1(V807_D-1) Preds: [A:W-1(V806_D-1) ] Succ: [C:W-1(V808_D-1) ] -NODE_DESCR: C:W-1(V808_D-1) Preds: [G:W-1(V807_D-1) ] Succ: [C:W-1(V809_D-1) ] -NODE_DESCR: C:W-1(V809_D-1) Preds: [C:W-1(V808_D-1) ] Succ: [A:W-1(V810_D-1) ] -NODE_DESCR: A:W-1(V810_D-1) Preds: [C:W-1(V809_D-1) ] Succ: [C:W-1(V811_D-1) ] -NODE_DESCR: C:W-1(V811_D-1) Preds: [A:W-1(V810_D-1) ] Succ: [C:W-1(V812_D-1) ] -NODE_DESCR: C:W-1(V812_D-1) Preds: [C:W-1(V811_D-1) ] Succ: [A:W-1(V717_D-1) ] -NODE_DESCR: C:W-1(V813_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V814_D-1) ] -NODE_DESCR: A:W-1(V814_D-1) Preds: [C:W-1(V813_D-1) ] Succ: [G:W-1(V815_D-1) ] -NODE_DESCR: G:W-1(V815_D-1) Preds: [A:W-1(V814_D-1) ] Succ: [C:W-1(V816_D-1) ] -NODE_DESCR: C:W-1(V816_D-1) Preds: [G:W-1(V815_D-1) ] Succ: [A:W-1(V817_D-1) ] -NODE_DESCR: A:W-1(V817_D-1) Preds: [C:W-1(V816_D-1) ] Succ: [C:W-1(V818_D-1) ] -NODE_DESCR: C:W-1(V818_D-1) Preds: [A:W-1(V817_D-1) ] Succ: [T:W-1(V819_D-1) ] -NODE_DESCR: T:W-1(V819_D-1) Preds: [C:W-1(V818_D-1) ] Succ: [C:W-1(V820_D-1) ] -NODE_DESCR: C:W-1(V820_D-1) Preds: [T:W-1(V819_D-1) ] Succ: [T:W-1(V821_D-1) ] -NODE_DESCR: T:W-1(V821_D-1) Preds: [C:W-1(V820_D-1) ] Succ: [G:W-1(V822_D-1) ] -NODE_DESCR: G:W-1(V822_D-1) Preds: [T:W-1(V821_D-1) ] Succ: [A:W-1(V823_D-1) ] -NODE_DESCR: A:W-1(V823_D-1) Preds: [G:W-1(V822_D-1) ] Succ: [A:W-1(V824_D-1) ] -NODE_DESCR: A:W-1(V824_D-1) Preds: [A:W-1(V823_D-1) ] Succ: [C:W-1(V825_D-1) ] -NODE_DESCR: C:W-1(V825_D-1) Preds: [A:W-1(V824_D-1) ] Succ: [C:W-1(V826_D-1) ] -NODE_DESCR: C:W-1(V826_D-1) Preds: [C:W-1(V825_D-1) ] Succ: [C:W-1(V827_D-1) ] -NODE_DESCR: C:W-1(V827_D-1) Preds: [C:W-1(V826_D-1) ] Succ: [T:W-1(V828_D-1) ] -NODE_DESCR: T:W-1(V828_D-1) Preds: [C:W-1(V827_D-1) ] Succ: [G:W-1(V829_D-1) ] -NODE_DESCR: G:W-1(V829_D-1) Preds: [T:W-1(V828_D-1) ] Succ: [T:W-1(V830_D-1) ] -NODE_DESCR: T:W-1(V830_D-1) Preds: [G:W-1(V829_D-1) ] Succ: [G:W-1(V831_D-1) ] -NODE_DESCR: G:W-1(V831_D-1) Preds: [T:W-1(V830_D-1) ] Succ: [A:W-1(V832_D-1) ] -NODE_DESCR: A:W-1(V832_D-1) Preds: [G:W-1(V831_D-1) ] Succ: [G:W-1(V833_D-1) ] -NODE_DESCR: G:W-1(V833_D-1) Preds: [A:W-1(V832_D-1) ] Succ: [G:W-1(V834_D-1) ] -NODE_DESCR: G:W-1(V834_D-1) Preds: [G:W-1(V833_D-1) ] Succ: [C:W-1(V835_D-1) ] -NODE_DESCR: C:W-1(V835_D-1) Preds: [G:W-1(V834_D-1) ] Succ: [A:W-1(V836_D-1) ] -NODE_DESCR: A:W-1(V836_D-1) Preds: [C:W-1(V835_D-1) ] Succ: [A:W-1(V549_D-1) ] -NODE_DESCR: G:W-1(V885_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V886_D-1) ] -NODE_DESCR: C:W-1(V886_D-1) Preds: [G:W-1(V885_D-1) ] Succ: [T:W-1(V887_D-1) ] -NODE_DESCR: T:W-1(V887_D-1) Preds: [C:W-1(V886_D-1) ] Succ: [C:W-1(V888_D-1) ] -NODE_DESCR: C:W-1(V888_D-1) Preds: [T:W-1(V887_D-1) ] Succ: [A:W-1(V889_D-1) ] -NODE_DESCR: A:W-1(V889_D-1) Preds: [C:W-1(V888_D-1) ] Succ: [T:W-1(V890_D-1) ] -NODE_DESCR: T:W-1(V890_D-1) Preds: [A:W-1(V889_D-1) ] Succ: [C:W-1(V891_D-1) ] -NODE_DESCR: C:W-1(V891_D-1) Preds: [T:W-1(V890_D-1) ] Succ: [A:W-1(V892_D-1) ] -NODE_DESCR: A:W-1(V892_D-1) Preds: [C:W-1(V891_D-1) ] Succ: [G:W-1(V893_D-1) ] -NODE_DESCR: G:W-1(V893_D-1) Preds: [A:W-1(V892_D-1) ] Succ: [C:W-1(V894_D-1) ] -NODE_DESCR: C:W-1(V894_D-1) Preds: [G:W-1(V893_D-1) ] Succ: [A:W-1(V895_D-1) ] -NODE_DESCR: A:W-1(V895_D-1) Preds: [C:W-1(V894_D-1) ] Succ: [A:W-1(V896_D-1) ] -NODE_DESCR: A:W-1(V896_D-1) Preds: [A:W-1(V895_D-1) ] Succ: [G:W-1(V897_D-1) ] -NODE_DESCR: G:W-1(V897_D-1) Preds: [A:W-1(V896_D-1) ] Succ: [A:W-1(V898_D-1) ] -NODE_DESCR: A:W-1(V898_D-1) Preds: [G:W-1(V897_D-1) ] Succ: [A:W-1(V899_D-1) ] -NODE_DESCR: A:W-1(V899_D-1) Preds: [A:W-1(V898_D-1) ] Succ: [G:W-1(V900_D-1) ] -NODE_DESCR: G:W-1(V900_D-1) Preds: [A:W-1(V899_D-1) ] Succ: [A:W-1(V901_D-1) ] -NODE_DESCR: A:W-1(V901_D-1) Preds: [G:W-1(V900_D-1) ] Succ: [A:W-1(V902_D-1) ] -NODE_DESCR: A:W-1(V902_D-1) Preds: [A:W-1(V901_D-1) ] Succ: [A:W-1(V903_D-1) ] -NODE_DESCR: A:W-1(V903_D-1) Preds: [A:W-1(V902_D-1) ] Succ: [T:W-1(V904_D-1) ] -NODE_DESCR: T:W-1(V904_D-1) Preds: [A:W-1(V903_D-1) ] Succ: [C:W-1(V905_D-1) ] -NODE_DESCR: C:W-1(V905_D-1) Preds: [T:W-1(V904_D-1) ] Succ: [T:W-1(V906_D-1) ] -NODE_DESCR: T:W-1(V906_D-1) Preds: [C:W-1(V905_D-1) ] Succ: [T:W-1(V907_D-1) ] -NODE_DESCR: T:W-1(V907_D-1) Preds: [T:W-1(V906_D-1) ] Succ: [T:W-1(V908_D-1) ] -NODE_DESCR: T:W-1(V908_D-1) Preds: [T:W-1(V907_D-1) ] Succ: [C:W-1(V440_D-1) ] -NODE_DESCR: AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) Preds: [] Succ: [C:W-1(V946_D-1) ] -NODE_DESCR: C:W-1(V946_D-1) Preds: [AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) ] Succ: [C:W-1(V947_D-1) ] -NODE_DESCR: C:W-1(V947_D-1) Preds: [C:W-1(V946_D-1) ] Succ: [T:W-1(V948_D-1) ] -NODE_DESCR: T:W-1(V948_D-1) Preds: [C:W-1(V947_D-1) ] Succ: [C:W-1(V949_D-1) ] -NODE_DESCR: C:W-1(V949_D-1) Preds: [T:W-1(V948_D-1) ] Succ: [A:W-1(V950_D-1) ] -NODE_DESCR: A:W-1(V950_D-1) Preds: [C:W-1(V949_D-1) ] Succ: [T:W-1(V951_D-1) ] -NODE_DESCR: T:W-1(V951_D-1) Preds: [A:W-1(V950_D-1) ] Succ: [C:W-1(V952_D-1) ] -NODE_DESCR: C:W-1(V952_D-1) Preds: [T:W-1(V951_D-1) ] Succ: [A:W-1(V953_D-1) ] -NODE_DESCR: A:W-1(V953_D-1) Preds: [C:W-1(V952_D-1) ] Succ: [G:W-1(V954_D-1) ] -NODE_DESCR: G:W-1(V954_D-1) Preds: [A:W-1(V953_D-1) ] Succ: [C:W-1(V955_D-1) ] -NODE_DESCR: C:W-1(V955_D-1) Preds: [G:W-1(V954_D-1) ] Succ: [A:W-1(V956_D-1) ] -NODE_DESCR: A:W-1(V956_D-1) Preds: [C:W-1(V955_D-1) ] Succ: [G:W-1(V957_D-1) ] -NODE_DESCR: G:W-1(V957_D-1) Preds: [A:W-1(V956_D-1) ] Succ: [G:W-1(V958_D-1) ] -NODE_DESCR: G:W-1(V958_D-1) Preds: [G:W-1(V957_D-1) ] Succ: [A:W-1(V959_D-1) ] -NODE_DESCR: A:W-1(V959_D-1) Preds: [G:W-1(V958_D-1) ] Succ: [A:W-1(V960_D-1) ] -NODE_DESCR: A:W-1(V960_D-1) Preds: [A:W-1(V959_D-1) ] Succ: [G:W-1(V961_D-1) ] -NODE_DESCR: G:W-1(V961_D-1) Preds: [A:W-1(V960_D-1) ] Succ: [A:W-1(V962_D-1) ] -NODE_DESCR: A:W-1(V962_D-1) Preds: [G:W-1(V961_D-1) ] Succ: [A:W-1(V963_D-1) ] -NODE_DESCR: A:W-1(V963_D-1) Preds: [A:W-1(V962_D-1) ] Succ: [A:W-1(V964_D-1) ] -NODE_DESCR: A:W-1(V964_D-1) Preds: [A:W-1(V963_D-1) ] Succ: [T:W-1(V965_D-1) ] -NODE_DESCR: T:W-1(V965_D-1) Preds: [A:W-1(V964_D-1) ] Succ: [C:W-1(V966_D-1) ] -NODE_DESCR: C:W-1(V966_D-1) Preds: [T:W-1(V965_D-1) ] Succ: [T:W-1(V967_D-1) ] -NODE_DESCR: T:W-1(V967_D-1) Preds: [C:W-1(V966_D-1) ] Succ: [T:W-1(V968_D-1) ] -NODE_DESCR: T:W-1(V968_D-1) Preds: [T:W-1(V967_D-1) ] Succ: [T:W-1(V969_D-1) ] -NODE_DESCR: T:W-1(V969_D-1) Preds: [T:W-1(V968_D-1) ] Succ: [C:W-1(V970_D-1) ] -NODE_DESCR: C:W-1(V970_D-1) Preds: [T:W-1(V969_D-1) ] Succ: [T:W-1(V971_D-1) ] -NODE_DESCR: T:W-1(V971_D-1) Preds: [C:W-1(V970_D-1) ] Succ: [T:W-1(V972_D-1) ] -NODE_DESCR: T:W-1(V972_D-1) Preds: [T:W-1(V971_D-1) ] Succ: [T:W-1(V973_D-1) ] -NODE_DESCR: T:W-1(V973_D-1) Preds: [T:W-1(V972_D-1) ] Succ: [C:W-1(V974_D-1) ] -NODE_DESCR: C:W-1(V974_D-1) Preds: [T:W-1(V973_D-1) ] Succ: [C:W-1(V975_D-1) ] -NODE_DESCR: C:W-1(V975_D-1) Preds: [C:W-1(V974_D-1) ] Succ: [A:W-1(V976_D-1) ] -NODE_DESCR: A:W-1(V976_D-1) Preds: [C:W-1(V975_D-1) ] Succ: [A:W-1(V977_D-1) ] -NODE_DESCR: A:W-1(V977_D-1) Preds: [A:W-1(V976_D-1) ] Succ: [G:W-1(V978_D-1) ] -NODE_DESCR: G:W-1(V978_D-1) Preds: [A:W-1(V977_D-1) ] Succ: [T:W-1(V979_D-1) ] -NODE_DESCR: T:W-1(V979_D-1) Preds: [G:W-1(V978_D-1) ] Succ: [A:W-1(V980_D-1) ] -NODE_DESCR: A:W-1(V980_D-1) Preds: [T:W-1(V979_D-1) ] Succ: [G:W-1(V451_D-1) ] -ORIGINAL GRAPH NODE: GGCCACACGATGGCTTATCACGTC with ID: 380 -ORIGINAL GRAPH NODE: GCCACACGATGGCTTATCACGTCC with ID: 381 -ORIGINAL GRAPH NODE: CCACACGATGGCTTATCACGTCCA with ID: 382 -ORIGINAL GRAPH NODE: CACACGATGGCTTATCACGTCCAC with ID: 383 -ORIGINAL GRAPH NODE: ACACGATGGCTTATCACGTCCACA with ID: 384 -ORIGINAL GRAPH NODE: CACGATGGCTTATCACGTCCACAT with ID: 385 -ORIGINAL GRAPH NODE: ACGATGGCTTATCACGTCCACATT with ID: 386 -ORIGINAL GRAPH NODE: CGATGGCTTATCACGTCCACATTT with ID: 387 -ORIGINAL GRAPH NODE: GATGGCTTATCACGTCCACATTTC with ID: 388 -ORIGINAL GRAPH NODE: ATGGCTTATCACGTCCACATTTCT with ID: 389 -ORIGINAL GRAPH NODE: TGGCTTATCACGTCCACATTTCTA with ID: 390 -ORIGINAL GRAPH NODE: GGCTTATCACGTCCACATTTCTAC with ID: 391 -ORIGINAL GRAPH NODE: GCTTATCACGTCCACATTTCTACT with ID: 392 -ORIGINAL GRAPH NODE: CTTATCACGTCCACATTTCTACTG with ID: 393 -ORIGINAL GRAPH NODE: TTATCACGTCCACATTTCTACTGG with ID: 394 -ORIGINAL GRAPH NODE: TATCACGTCCACATTTCTACTGGC with ID: 395 -ORIGINAL GRAPH NODE: ATCACGTCCACATTTCTACTGGCT with ID: 396 -ORIGINAL GRAPH NODE: TCACGTCCACATTTCTACTGGCTA with ID: 397 -ORIGINAL GRAPH NODE: CACGTCCACATTTCTACTGGCTAC with ID: 398 -ORIGINAL GRAPH NODE: ACGTCCACATTTCTACTGGCTACA with ID: 399 -ORIGINAL GRAPH NODE: CGTCCACATTTCTACTGGCTACAA with ID: 400 -ORIGINAL GRAPH NODE: GTCCACATTTCTACTGGCTACAAA with ID: 401 -ORIGINAL GRAPH NODE: TCCACATTTCTACTGGCTACAAAC with ID: 402 -ORIGINAL GRAPH NODE: CCACATTTCTACTGGCTACAAACA with ID: 403 -ORIGINAL GRAPH NODE: CACATTTCTACTGGCTACAAACAG with ID: 404 -ORIGINAL GRAPH NODE: ACATTTCTACTGGCTACAAACAGA with ID: 405 -ORIGINAL GRAPH NODE: CATTTCTACTGGCTACAAACAGAC with ID: 406 -ORIGINAL GRAPH NODE: ATTTCTACTGGCTACAAACAGACT with ID: 407 -ORIGINAL GRAPH NODE: TTTCTACTGGCTACAAACAGACTT with ID: 408 -ORIGINAL GRAPH NODE: TTCTACTGGCTACAAACAGACTTC with ID: 409 -ORIGINAL GRAPH NODE: TCTACTGGCTACAAACAGACTTCC with ID: 410 -ORIGINAL GRAPH NODE: CTACTGGCTACAAACAGACTTCCT with ID: 411 -ORIGINAL GRAPH NODE: TACTGGCTACAAACAGACTTCCTC with ID: 412 -ORIGINAL GRAPH NODE: ACTGGCTACAAACAGACTTCCTCA with ID: 413 -ORIGINAL GRAPH NODE: CTGGCTACAAACAGACTTCCTCAA with ID: 414 -ORIGINAL GRAPH NODE: TGGCTACAAACAGACTTCCTCAAG with ID: 415 -ORIGINAL GRAPH NODE: GGCTACAAACAGACTTCCTCAAGC with ID: 416 -ORIGINAL GRAPH NODE: GCTACAAACAGACTTCCTCAAGCC with ID: 417 -ORIGINAL GRAPH NODE: CTACAAACAGACTTCCTCAAGCCT with ID: 418 -ORIGINAL GRAPH NODE: TACAAACAGACTTCCTCAAGCCTC with ID: 419 -ORIGINAL GRAPH NODE: ACAAACAGACTTCCTCAAGCCTCA with ID: 420 -ORIGINAL GRAPH NODE: CAAACAGACTTCCTCAAGCCTCAT with ID: 421 -ORIGINAL GRAPH NODE: AAACAGACTTCCTCAAGCCTCATC with ID: 422 -ORIGINAL GRAPH NODE: AACAGACTTCCTCAAGCCTCATCA with ID: 423 -ORIGINAL GRAPH NODE: ACAGACTTCCTCAAGCCTCATCAG with ID: 424 -ORIGINAL GRAPH NODE: CAGACTTCCTCAAGCCTCATCAGC with ID: 425 -ORIGINAL GRAPH NODE: AGACTTCCTCAAGCCTCATCAGCA with ID: 426 -ORIGINAL GRAPH NODE: GACTTCCTCAAGCCTCATCAGCAA with ID: 427 -ORIGINAL GRAPH NODE: ACTTCCTCAAGCCTCATCAGCAAG with ID: 428 -ORIGINAL GRAPH NODE: CTTCCTCAAGCCTCATCAGCAAGA with ID: 429 -ORIGINAL GRAPH NODE: TTCCTCAAGCCTCATCAGCAAGAA with ID: 430 -ORIGINAL GRAPH NODE: TCCTCAAGCCTCATCAGCAAGAAG with ID: 431 -ORIGINAL GRAPH NODE: CCTCAAGCCTCATCAGCAAGAAGA with ID: 432 -ORIGINAL GRAPH NODE: CTCAAGCCTCATCAGCAAGAAGAA with ID: 433 -ORIGINAL GRAPH NODE: TCAAGCCTCATCAGCAAGAAGAAA with ID: 434 -ORIGINAL GRAPH NODE: CAAGCCTCATCAGCAAGAAGAAAT with ID: 435 -ORIGINAL GRAPH NODE: AAGCCTCATCAGCAAGAAGAAATC with ID: 436 -ORIGINAL GRAPH NODE: AGCCTCATCAGCAAGAAGAAATCT with ID: 437 -ORIGINAL GRAPH NODE: GCCTCATCAGCAAGAAGAAATCTT with ID: 438 -ORIGINAL GRAPH NODE: CCTCATCAGCAAGAAGAAATCTTT with ID: 439 -ORIGINAL GRAPH NODE: CTCATCAGCAAGAAGAAATCTTTC with ID: 440 -ORIGINAL GRAPH NODE: TCATCAGCAAGAAGAAATCTTTCT with ID: 441 -ORIGINAL GRAPH NODE: CATCAGCAAGAAGAAATCTTTCTT with ID: 442 -ORIGINAL GRAPH NODE: ATCAGCAAGAAGAAATCTTTCTTT with ID: 443 -ORIGINAL GRAPH NODE: TCAGCAAGAAGAAATCTTTCTTTC with ID: 444 -ORIGINAL GRAPH NODE: CAGCAAGAAGAAATCTTTCTTTCC with ID: 445 -ORIGINAL GRAPH NODE: AGCAAGAAGAAATCTTTCTTTCCA with ID: 446 -ORIGINAL GRAPH NODE: GCAAGAAGAAATCTTTCTTTCCAA with ID: 447 -ORIGINAL GRAPH NODE: CAAGAAGAAATCTTTCTTTCCAAG with ID: 448 -ORIGINAL GRAPH NODE: AAGAAGAAATCTTTCTTTCCAAGT with ID: 449 -ORIGINAL GRAPH NODE: AGAAGAAATCTTTCTTTCCAAGTA with ID: 450 -ORIGINAL GRAPH NODE: GAAGAAATCTTTCTTTCCAAGTAG with ID: 451 -ORIGINAL GRAPH NODE: AAGAAATCTTTCTTTCCAAGTAGT with ID: 452 -ORIGINAL GRAPH NODE: AGAAATCTTTCTTTCCAAGTAGTG with ID: 453 -ORIGINAL GRAPH NODE: GAAATCTTTCTTTCCAAGTAGTGT with ID: 454 -ORIGINAL GRAPH NODE: AAATCTTTCTTTCCAAGTAGTGTC with ID: 455 -ORIGINAL GRAPH NODE: AATCTTTCTTTCCAAGTAGTGTCT with ID: 456 -ORIGINAL GRAPH NODE: ATCTTTCTTTCCAAGTAGTGTCTT with ID: 457 -ORIGINAL GRAPH NODE: TCTTTCTTTCCAAGTAGTGTCTTA with ID: 458 -ORIGINAL GRAPH NODE: CTTTCTTTCCAAGTAGTGTCTTAA with ID: 459 -ORIGINAL GRAPH NODE: TTTCTTTCCAAGTAGTGTCTTAAC with ID: 460 -ORIGINAL GRAPH NODE: TTCTTTCCAAGTAGTGTCTTAACT with ID: 461 -ORIGINAL GRAPH NODE: TCTTTCCAAGTAGTGTCTTAACTC with ID: 462 -ORIGINAL GRAPH NODE: CTTTCCAAGTAGTGTCTTAACTCA with ID: 463 -ORIGINAL GRAPH NODE: TTTCCAAGTAGTGTCTTAACTCAG with ID: 464 -ORIGINAL GRAPH NODE: TTCCAAGTAGTGTCTTAACTCAGG with ID: 465 -ORIGINAL GRAPH NODE: TCCAAGTAGTGTCTTAACTCAGGA with ID: 466 -ORIGINAL GRAPH NODE: CCAAGTAGTGTCTTAACTCAGGAG with ID: 467 -ORIGINAL GRAPH NODE: CAAGTAGTGTCTTAACTCAGGAGA with ID: 468 -ORIGINAL GRAPH NODE: AAGTAGTGTCTTAACTCAGGAGAT with ID: 469 -ORIGINAL GRAPH NODE: AGTAGTGTCTTAACTCAGGAGATC with ID: 470 -ORIGINAL GRAPH NODE: GTAGTGTCTTAACTCAGGAGATCA with ID: 471 -ORIGINAL GRAPH NODE: TAGTGTCTTAACTCAGGAGATCAT with ID: 472 -ORIGINAL GRAPH NODE: AGTGTCTTAACTCAGGAGATCATG with ID: 473 -ORIGINAL GRAPH NODE: GTGTCTTAACTCAGGAGATCATGG with ID: 474 -ORIGINAL GRAPH NODE: TGTCTTAACTCAGGAGATCATGGT with ID: 475 -ORIGINAL GRAPH NODE: GTCTTAACTCAGGAGATCATGGTA with ID: 476 -ORIGINAL GRAPH NODE: TCTTAACTCAGGAGATCATGGTAG with ID: 477 -ORIGINAL GRAPH NODE: CTTAACTCAGGAGATCATGGTAGG with ID: 478 -ORIGINAL GRAPH NODE: TTAACTCAGGAGATCATGGTAGGG with ID: 479 -ORIGINAL GRAPH NODE: TAACTCAGGAGATCATGGTAGGGA with ID: 480 -ORIGINAL GRAPH NODE: AACTCAGGAGATCATGGTAGGGAA with ID: 481 -ORIGINAL GRAPH NODE: ACTCAGGAGATCATGGTAGGGAAG with ID: 482 -ORIGINAL GRAPH NODE: CTCAGGAGATCATGGTAGGGAAGG with ID: 483 -ORIGINAL GRAPH NODE: TCAGGAGATCATGGTAGGGAAGGG with ID: 484 -ORIGINAL GRAPH NODE: CAGGAGATCATGGTAGGGAAGGGG with ID: 485 -ORIGINAL GRAPH NODE: AGGAGATCATGGTAGGGAAGGGGT with ID: 486 -ORIGINAL GRAPH NODE: GGAGATCATGGTAGGGAAGGGGTC with ID: 487 -ORIGINAL GRAPH NODE: GAGATCATGGTAGGGAAGGGGTCA with ID: 488 -ORIGINAL GRAPH NODE: AGATCATGGTAGGGAAGGGGTCAG with ID: 489 -ORIGINAL GRAPH NODE: GATCATGGTAGGGAAGGGGTCAGG with ID: 490 -ORIGINAL GRAPH NODE: ATCATGGTAGGGAAGGGGTCAGGC with ID: 491 -ORIGINAL GRAPH NODE: TCATGGTAGGGAAGGGGTCAGGCC with ID: 492 -ORIGINAL GRAPH NODE: CATGGTAGGGAAGGGGTCAGGCCA with ID: 493 -ORIGINAL GRAPH NODE: ATGGTAGGGAAGGGGTCAGGCCAC with ID: 494 -ORIGINAL GRAPH NODE: TGGTAGGGAAGGGGTCAGGCCACT with ID: 495 -ORIGINAL GRAPH NODE: GGTAGGGAAGGGGTCAGGCCACTT with ID: 496 -ORIGINAL GRAPH NODE: GTAGGGAAGGGGTCAGGCCACTTC with ID: 497 -ORIGINAL GRAPH NODE: TAGGGAAGGGGTCAGGCCACTTCA with ID: 498 -ORIGINAL GRAPH NODE: AGGGAAGGGGTCAGGCCACTTCAC with ID: 499 -ORIGINAL GRAPH NODE: GGGAAGGGGTCAGGCCACTTCACA with ID: 500 -ORIGINAL GRAPH NODE: GGAAGGGGTCAGGCCACTTCACAA with ID: 501 -ORIGINAL GRAPH NODE: GAAGGGGTCAGGCCACTTCACAAG with ID: 502 -ORIGINAL GRAPH NODE: AAGGGGTCAGGCCACTTCACAAGG with ID: 503 -ORIGINAL GRAPH NODE: AGGGGTCAGGCCACTTCACAAGGA with ID: 504 -ORIGINAL GRAPH NODE: GGGGTCAGGCCACTTCACAAGGAG with ID: 505 -ORIGINAL GRAPH NODE: GGGTCAGGCCACTTCACAAGGAGC with ID: 506 -ORIGINAL GRAPH NODE: GGTCAGGCCACTTCACAAGGAGCA with ID: 507 -ORIGINAL GRAPH NODE: GTCAGGCCACTTCACAAGGAGCAG with ID: 508 -ORIGINAL GRAPH NODE: TCAGGCCACTTCACAAGGAGCAGA with ID: 509 -ORIGINAL GRAPH NODE: CAGGCCACTTCACAAGGAGCAGAG with ID: 510 -ORIGINAL GRAPH NODE: AGGCCACTTCACAAGGAGCAGAGT with ID: 511 -ORIGINAL GRAPH NODE: GGCCACTTCACAAGGAGCAGAGTT with ID: 512 -ORIGINAL GRAPH NODE: GCCACTTCACAAGGAGCAGAGTTA with ID: 513 -ORIGINAL GRAPH NODE: CCACTTCACAAGGAGCAGAGTTAG with ID: 514 -ORIGINAL GRAPH NODE: CACTTCACAAGGAGCAGAGTTAGG with ID: 515 -ORIGINAL GRAPH NODE: ACTTCACAAGGAGCAGAGTTAGGA with ID: 516 -ORIGINAL GRAPH NODE: CTTCACAAGGAGCAGAGTTAGGAA with ID: 517 -ORIGINAL GRAPH NODE: TTCACAAGGAGCAGAGTTAGGAAG with ID: 518 -ORIGINAL GRAPH NODE: TCACAAGGAGCAGAGTTAGGAAGC with ID: 519 -ORIGINAL GRAPH NODE: CACAAGGAGCAGAGTTAGGAAGCT with ID: 520 -ORIGINAL GRAPH NODE: ACAAGGAGCAGAGTTAGGAAGCTC with ID: 521 -ORIGINAL GRAPH NODE: CAAGGAGCAGAGTTAGGAAGCTCC with ID: 522 -ORIGINAL GRAPH NODE: AAGGAGCAGAGTTAGGAAGCTCCC with ID: 523 -ORIGINAL GRAPH NODE: AGGAGCAGAGTTAGGAAGCTCCCT with ID: 524 -ORIGINAL GRAPH NODE: GGAGCAGAGTTAGGAAGCTCCCTG with ID: 525 -ORIGINAL GRAPH NODE: GAGCAGAGTTAGGAAGCTCCCTGA with ID: 526 -ORIGINAL GRAPH NODE: AGCAGAGTTAGGAAGCTCCCTGAG with ID: 527 -ORIGINAL GRAPH NODE: GCAGAGTTAGGAAGCTCCCTGAGC with ID: 528 -ORIGINAL GRAPH NODE: CAGAGTTAGGAAGCTCCCTGAGCA with ID: 529 -ORIGINAL GRAPH NODE: AGAGTTAGGAAGCTCCCTGAGCAC with ID: 530 -ORIGINAL GRAPH NODE: GAGTTAGGAAGCTCCCTGAGCACT with ID: 531 -ORIGINAL GRAPH NODE: AGTTAGGAAGCTCCCTGAGCACTC with ID: 532 -ORIGINAL GRAPH NODE: GTTAGGAAGCTCCCTGAGCACTCT with ID: 533 -ORIGINAL GRAPH NODE: TTAGGAAGCTCCCTGAGCACTCTG with ID: 534 -ORIGINAL GRAPH NODE: TAGGAAGCTCCCTGAGCACTCTGA with ID: 535 -ORIGINAL GRAPH NODE: AGGAAGCTCCCTGAGCACTCTGAA with ID: 536 -ORIGINAL GRAPH NODE: GGAAGCTCCCTGAGCACTCTGAAC with ID: 537 -ORIGINAL GRAPH NODE: GAAGCTCCCTGAGCACTCTGAACC with ID: 538 -ORIGINAL GRAPH NODE: AAGCTCCCTGAGCACTCTGAACCC with ID: 539 -ORIGINAL GRAPH NODE: AGCTCCCTGAGCACTCTGAACCCT with ID: 540 -ORIGINAL GRAPH NODE: GCTCCCTGAGCACTCTGAACCCTG with ID: 541 -ORIGINAL GRAPH NODE: CTCCCTGAGCACTCTGAACCCTGT with ID: 542 -ORIGINAL GRAPH NODE: TCCCTGAGCACTCTGAACCCTGTG with ID: 543 -ORIGINAL GRAPH NODE: CCCTGAGCACTCTGAACCCTGTGA with ID: 544 -ORIGINAL GRAPH NODE: CCTGAGCACTCTGAACCCTGTGAG with ID: 545 -ORIGINAL GRAPH NODE: CTGAGCACTCTGAACCCTGTGAGG with ID: 546 -ORIGINAL GRAPH NODE: TGAGCACTCTGAACCCTGTGAGGC with ID: 547 -ORIGINAL GRAPH NODE: GAGCACTCTGAACCCTGTGAGGCA with ID: 548 -ORIGINAL GRAPH NODE: AGCACTCTGAACCCTGTGAGGCAA with ID: 549 -ORIGINAL GRAPH NODE: GCACTCTGAACCCTGTGAGGCAAG with ID: 550 -ORIGINAL GRAPH NODE: CACTCTGAACCCTGTGAGGCAAGT with ID: 551 -ORIGINAL GRAPH NODE: ACTCTGAACCCTGTGAGGCAAGTC with ID: 552 -ORIGINAL GRAPH NODE: CTCTGAACCCTGTGAGGCAAGTCC with ID: 553 -ORIGINAL GRAPH NODE: TCTGAACCCTGTGAGGCAAGTCCA with ID: 554 -ORIGINAL GRAPH NODE: CTGAACCCTGTGAGGCAAGTCCAC with ID: 555 -ORIGINAL GRAPH NODE: TGAACCCTGTGAGGCAAGTCCACC with ID: 556 -ORIGINAL GRAPH NODE: GAACCCTGTGAGGCAAGTCCACCA with ID: 557 -ORIGINAL GRAPH NODE: AACCCTGTGAGGCAAGTCCACCAC with ID: 558 -ORIGINAL GRAPH NODE: ACCCTGTGAGGCAAGTCCACCACC with ID: 559 -ORIGINAL GRAPH NODE: CCCTGTGAGGCAAGTCCACCACCA with ID: 560 -ORIGINAL GRAPH NODE: CCTGTGAGGCAAGTCCACCACCAG with ID: 561 -ORIGINAL GRAPH NODE: CTGTGAGGCAAGTCCACCACCAGC with ID: 562 -ORIGINAL GRAPH NODE: TGTGAGGCAAGTCCACCACCAGCG with ID: 563 -ORIGINAL GRAPH NODE: GTGAGGCAAGTCCACCACCAGCGT with ID: 564 -ORIGINAL GRAPH NODE: TGAGGCAAGTCCACCACCAGCGTA with ID: 565 -ORIGINAL GRAPH NODE: GAGGCAAGTCCACCACCAGCGTAT with ID: 566 -ORIGINAL GRAPH NODE: AGGCAAGTCCACCACCAGCGTATC with ID: 567 -ORIGINAL GRAPH NODE: GGCAAGTCCACCACCAGCGTATCT with ID: 568 -ORIGINAL GRAPH NODE: GCAAGTCCACCACCAGCGTATCTA with ID: 569 -ORIGINAL GRAPH NODE: CAAGTCCACCACCAGCGTATCTAG with ID: 570 -ORIGINAL GRAPH NODE: AAGTCCACCACCAGCGTATCTAGA with ID: 571 -ORIGINAL GRAPH NODE: AGTCCACCACCAGCGTATCTAGAC with ID: 572 -ORIGINAL GRAPH NODE: GTCCACCACCAGCGTATCTAGACC with ID: 573 -ORIGINAL GRAPH NODE: TCCACCACCAGCGTATCTAGACCC with ID: 574 -ORIGINAL GRAPH NODE: CCACCACCAGCGTATCTAGACCCA with ID: 575 -ORIGINAL GRAPH NODE: CACCACCAGCGTATCTAGACCCAG with ID: 576 -ORIGINAL GRAPH NODE: ACCACCAGCGTATCTAGACCCAGG with ID: 577 -ORIGINAL GRAPH NODE: CCACCAGCGTATCTAGACCCAGGC with ID: 578 -ORIGINAL GRAPH NODE: CACCAGCGTATCTAGACCCAGGCC with ID: 579 -ORIGINAL GRAPH NODE: ACCAGCGTATCTAGACCCAGGCCA with ID: 580 -ORIGINAL GRAPH NODE: CCAGCGTATCTAGACCCAGGCCAT with ID: 581 -ORIGINAL GRAPH NODE: CAGCGTATCTAGACCCAGGCCATC with ID: 582 -ORIGINAL GRAPH NODE: AGCGTATCTAGACCCAGGCCATCT with ID: 583 -ORIGINAL GRAPH NODE: GCGTATCTAGACCCAGGCCATCTA with ID: 584 -ORIGINAL GRAPH NODE: CGTATCTAGACCCAGGCCATCTAA with ID: 585 -ORIGINAL GRAPH NODE: GTATCTAGACCCAGGCCATCTAAT with ID: 586 -ORIGINAL GRAPH NODE: TATCTAGACCCAGGCCATCTAATA with ID: 587 -ORIGINAL GRAPH NODE: ATCTAGACCCAGGCCATCTAATAA with ID: 588 -ORIGINAL GRAPH NODE: TCTAGACCCAGGCCATCTAATAAA with ID: 589 -ORIGINAL GRAPH NODE: CTAGACCCAGGCCATCTAATAAAG with ID: 590 -ORIGINAL GRAPH NODE: TAGACCCAGGCCATCTAATAAAGG with ID: 591 -ORIGINAL GRAPH NODE: AGACCCAGGCCATCTAATAAAGGA with ID: 592 -ORIGINAL GRAPH NODE: GACCCAGGCCATCTAATAAAGGAA with ID: 593 -ORIGINAL GRAPH NODE: ACCCAGGCCATCTAATAAAGGAAA with ID: 594 -ORIGINAL GRAPH NODE: CCCAGGCCATCTAATAAAGGAAAA with ID: 595 -ORIGINAL GRAPH NODE: CCAGGCCATCTAATAAAGGAAAAC with ID: 596 -ORIGINAL GRAPH NODE: CAGGCCATCTAATAAAGGAAAACT with ID: 597 -ORIGINAL GRAPH NODE: AGGCCATCTAATAAAGGAAAACTG with ID: 598 -ORIGINAL GRAPH NODE: GGCCATCTAATAAAGGAAAACTGC with ID: 599 -ORIGINAL GRAPH NODE: GCCATCTAATAAAGGAAAACTGCA with ID: 600 -ORIGINAL GRAPH NODE: CCATCTAATAAAGGAAAACTGCAT with ID: 601 -ORIGINAL GRAPH NODE: CATCTAATAAAGGAAAACTGCATC with ID: 602 -ORIGINAL GRAPH NODE: ATCTAATAAAGGAAAACTGCATCT with ID: 603 -ORIGINAL GRAPH NODE: TCTAATAAAGGAAAACTGCATCTT with ID: 604 -ORIGINAL GRAPH NODE: CTAATAAAGGAAAACTGCATCTTT with ID: 605 -ORIGINAL GRAPH NODE: TAATAAAGGAAAACTGCATCTTTG with ID: 606 -ORIGINAL GRAPH NODE: AATAAAGGAAAACTGCATCTTTGC with ID: 607 -ORIGINAL GRAPH NODE: ATAAAGGAAAACTGCATCTTTGCC with ID: 608 -ORIGINAL GRAPH NODE: TAAAGGAAAACTGCATCTTTGCCC with ID: 609 -ORIGINAL GRAPH NODE: AAAGGAAAACTGCATCTTTGCCCA with ID: 610 -ORIGINAL GRAPH NODE: AAGGAAAACTGCATCTTTGCCCAC with ID: 611 -ORIGINAL GRAPH NODE: AGGAAAACTGCATCTTTGCCCACA with ID: 612 -ORIGINAL GRAPH NODE: GGAAAACTGCATCTTTGCCCACAT with ID: 613 -ORIGINAL GRAPH NODE: GAAAACTGCATCTTTGCCCACATG with ID: 614 -ORIGINAL GRAPH NODE: AAAACTGCATCTTTGCCCACATGA with ID: 615 -ORIGINAL GRAPH NODE: AAACTGCATCTTTGCCCACATGAT with ID: 616 -ORIGINAL GRAPH NODE: AACTGCATCTTTGCCCACATGATG with ID: 617 -ORIGINAL GRAPH NODE: ACTGCATCTTTGCCCACATGATGC with ID: 618 -ORIGINAL GRAPH NODE: CTGCATCTTTGCCCACATGATGCT with ID: 619 -ORIGINAL GRAPH NODE: TGCATCTTTGCCCACATGATGCTT with ID: 620 -ORIGINAL GRAPH NODE: GCATCTTTGCCCACATGATGCTTG with ID: 621 -ORIGINAL GRAPH NODE: CATCTTTGCCCACATGATGCTTGG with ID: 622 -ORIGINAL GRAPH NODE: ATCTTTGCCCACATGATGCTTGGT with ID: 623 -ORIGINAL GRAPH NODE: TCTTTGCCCACATGATGCTTGGTT with ID: 624 -ORIGINAL GRAPH NODE: CTTTGCCCACATGATGCTTGGTTA with ID: 625 -ORIGINAL GRAPH NODE: TTTGCCCACATGATGCTTGGTTAA with ID: 626 -ORIGINAL GRAPH NODE: TTGCCCACATGATGCTTGGTTAAG with ID: 627 -ORIGINAL GRAPH NODE: TGCCCACATGATGCTTGGTTAAGA with ID: 628 -ORIGINAL GRAPH NODE: GCCCACATGATGCTTGGTTAAGAC with ID: 629 -ORIGINAL GRAPH NODE: CCCACATGATGCTTGGTTAAGACA with ID: 630 -ORIGINAL GRAPH NODE: CCACATGATGCTTGGTTAAGACAA with ID: 631 -ORIGINAL GRAPH NODE: CACATGATGCTTGGTTAAGACAAG with ID: 632 -ORIGINAL GRAPH NODE: ACATGATGCTTGGTTAAGACAAGG with ID: 633 -ORIGINAL GRAPH NODE: CATGATGCTTGGTTAAGACAAGGG with ID: 634 -ORIGINAL GRAPH NODE: ATGATGCTTGGTTAAGACAAGGGG with ID: 635 -ORIGINAL GRAPH NODE: TGATGCTTGGTTAAGACAAGGGGT with ID: 636 -ORIGINAL GRAPH NODE: GATGCTTGGTTAAGACAAGGGGTT with ID: 637 -ORIGINAL GRAPH NODE: ATGCTTGGTTAAGACAAGGGGTTA with ID: 638 -ORIGINAL GRAPH NODE: TGCTTGGTTAAGACAAGGGGTTAG with ID: 639 -ORIGINAL GRAPH NODE: GCTTGGTTAAGACAAGGGGTTAGT with ID: 640 -ORIGINAL GRAPH NODE: CTTGGTTAAGACAAGGGGTTAGTG with ID: 641 -ORIGINAL GRAPH NODE: TTGGTTAAGACAAGGGGTTAGTGA with ID: 642 -ORIGINAL GRAPH NODE: TGGTTAAGACAAGGGGTTAGTGAC with ID: 643 -ORIGINAL GRAPH NODE: GGTTAAGACAAGGGGTTAGTGACA with ID: 644 -ORIGINAL GRAPH NODE: GTTAAGACAAGGGGTTAGTGACAA with ID: 645 -ORIGINAL GRAPH NODE: TTAAGACAAGGGGTTAGTGACAAA with ID: 646 -ORIGINAL GRAPH NODE: TAAGACAAGGGGTTAGTGACAAAG with ID: 647 -ORIGINAL GRAPH NODE: AAGACAAGGGGTTAGTGACAAAGT with ID: 648 -ORIGINAL GRAPH NODE: AGACAAGGGGTTAGTGACAAAGTA with ID: 649 -ORIGINAL GRAPH NODE: GACAAGGGGTTAGTGACAAAGTAA with ID: 650 -ORIGINAL GRAPH NODE: ACAAGGGGTTAGTGACAAAGTAAA with ID: 651 -ORIGINAL GRAPH NODE: CAAGGGGTTAGTGACAAAGTAAAG with ID: 652 -ORIGINAL GRAPH NODE: AAGGGGTTAGTGACAAAGTAAAGA with ID: 653 -ORIGINAL GRAPH NODE: AGGGGTTAGTGACAAAGTAAAGAG with ID: 654 -ORIGINAL GRAPH NODE: GGGGTTAGTGACAAAGTAAAGAGG with ID: 655 -ORIGINAL GRAPH NODE: GGGTTAGTGACAAAGTAAAGAGGA with ID: 656 -ORIGINAL GRAPH NODE: GGTTAGTGACAAAGTAAAGAGGAT with ID: 657 -ORIGINAL GRAPH NODE: GTTAGTGACAAAGTAAAGAGGATG with ID: 658 -ORIGINAL GRAPH NODE: TTAGTGACAAAGTAAAGAGGATGA with ID: 659 -ORIGINAL GRAPH NODE: TAGTGACAAAGTAAAGAGGATGAC with ID: 660 -ORIGINAL GRAPH NODE: AGTGACAAAGTAAAGAGGATGACA with ID: 661 -ORIGINAL GRAPH NODE: GTGACAAAGTAAAGAGGATGACAG with ID: 662 -ORIGINAL GRAPH NODE: TGACAAAGTAAAGAGGATGACAGA with ID: 663 -ORIGINAL GRAPH NODE: GACAAAGTAAAGAGGATGACAGAC with ID: 664 -ORIGINAL GRAPH NODE: ACAAAGTAAAGAGGATGACAGACT with ID: 665 -ORIGINAL GRAPH NODE: CAAAGTAAAGAGGATGACAGACTC with ID: 666 -ORIGINAL GRAPH NODE: AAAGTAAAGAGGATGACAGACTCT with ID: 667 -ORIGINAL GRAPH NODE: AAGTAAAGAGGATGACAGACTCTC with ID: 668 -ORIGINAL GRAPH NODE: AGTAAAGAGGATGACAGACTCTCT with ID: 669 -ORIGINAL GRAPH NODE: GTAAAGAGGATGACAGACTCTCTA with ID: 670 -ORIGINAL GRAPH NODE: TAAAGAGGATGACAGACTCTCTAA with ID: 671 -ORIGINAL GRAPH NODE: AAAGAGGATGACAGACTCTCTAAG with ID: 672 -ORIGINAL GRAPH NODE: AAGAGGATGACAGACTCTCTAAGG with ID: 673 -ORIGINAL GRAPH NODE: AGAGGATGACAGACTCTCTAAGGG with ID: 674 -ORIGINAL GRAPH NODE: GAGGATGACAGACTCTCTAAGGGA with ID: 675 -ORIGINAL GRAPH NODE: AGGATGACAGACTCTCTAAGGGAC with ID: 676 -ORIGINAL GRAPH NODE: GGATGACAGACTCTCTAAGGGACA with ID: 677 -ORIGINAL GRAPH NODE: GATGACAGACTCTCTAAGGGACAT with ID: 678 -ORIGINAL GRAPH NODE: ATGACAGACTCTCTAAGGGACATA with ID: 679 -ORIGINAL GRAPH NODE: TGACAGACTCTCTAAGGGACATAT with ID: 680 -ORIGINAL GRAPH NODE: GACAGACTCTCTAAGGGACATATG with ID: 681 -ORIGINAL GRAPH NODE: ACAGACTCTCTAAGGGACATATGG with ID: 682 -ORIGINAL GRAPH NODE: CAGACTCTCTAAGGGACATATGGG with ID: 683 -ORIGINAL GRAPH NODE: AGACTCTCTAAGGGACATATGGGA with ID: 684 -ORIGINAL GRAPH NODE: GACTCTCTAAGGGACATATGGGAG with ID: 685 -ORIGINAL GRAPH NODE: ACTCTCTAAGGGACATATGGGAGC with ID: 686 -ORIGINAL GRAPH NODE: CTCTCTAAGGGACATATGGGAGCT with ID: 687 -ORIGINAL GRAPH NODE: TCTCTAAGGGACATATGGGAGCTA with ID: 688 -ORIGINAL GRAPH NODE: CTCTAAGGGACATATGGGAGCTAC with ID: 689 -ORIGINAL GRAPH NODE: TCTAAGGGACATATGGGAGCTACA with ID: 690 -ORIGINAL GRAPH NODE: CTAAGGGACATATGGGAGCTACAT with ID: 691 -ORIGINAL GRAPH NODE: TAAGGGACATATGGGAGCTACATA with ID: 692 -ORIGINAL GRAPH NODE: AAGGGACATATGGGAGCTACATAG with ID: 693 -ORIGINAL GRAPH NODE: AGGGACATATGGGAGCTACATAGC with ID: 694 -ORIGINAL GRAPH NODE: GGGACATATGGGAGCTACATAGCC with ID: 695 -ORIGINAL GRAPH NODE: GGACATATGGGAGCTACATAGCCA with ID: 696 -ORIGINAL GRAPH NODE: GACATATGGGAGCTACATAGCCAG with ID: 697 -ORIGINAL GRAPH NODE: ACATATGGGAGCTACATAGCCAGC with ID: 698 -ORIGINAL GRAPH NODE: CATATGGGAGCTACATAGCCAGCC with ID: 699 -ORIGINAL GRAPH NODE: ATATGGGAGCTACATAGCCAGCCC with ID: 700 -ORIGINAL GRAPH NODE: TATGGGAGCTACATAGCCAGCCCC with ID: 701 -ORIGINAL GRAPH NODE: ATGGGAGCTACATAGCCAGCCCCG with ID: 702 -ORIGINAL GRAPH NODE: TGGGAGCTACATAGCCAGCCCCGT with ID: 703 -ORIGINAL GRAPH NODE: GGGAGCTACATAGCCAGCCCCGTG with ID: 704 -ORIGINAL GRAPH NODE: GGAGCTACATAGCCAGCCCCGTGG with ID: 705 -ORIGINAL GRAPH NODE: GAGCTACATAGCCAGCCCCGTGGA with ID: 706 -ORIGINAL GRAPH NODE: AGCTACATAGCCAGCCCCGTGGAG with ID: 707 -ORIGINAL GRAPH NODE: GCTACATAGCCAGCCCCGTGGAGG with ID: 708 -ORIGINAL GRAPH NODE: CTACATAGCCAGCCCCGTGGAGGG with ID: 709 -ORIGINAL GRAPH NODE: TACATAGCCAGCCCCGTGGAGGGA with ID: 710 -ORIGINAL GRAPH NODE: ACATAGCCAGCCCCGTGGAGGGAG with ID: 711 -ORIGINAL GRAPH NODE: CATAGCCAGCCCCGTGGAGGGAGC with ID: 712 -ORIGINAL GRAPH NODE: ATAGCCAGCCCCGTGGAGGGAGCC with ID: 713 -ORIGINAL GRAPH NODE: TAGCCAGCCCCGTGGAGGGAGCCA with ID: 714 -ORIGINAL GRAPH NODE: AGCCAGCCCCGTGGAGGGAGCCAC with ID: 715 -ORIGINAL GRAPH NODE: GCCAGCCCCGTGGAGGGAGCCACC with ID: 716 -ORIGINAL GRAPH NODE: CCAGCCCCGTGGAGGGAGCCACCA with ID: 717 -ORIGINAL GRAPH NODE: CAGCCCCGTGGAGGGAGCCACCAG with ID: 718 -ORIGINAL GRAPH NODE: AGCCCCGTGGAGGGAGCCACCAGC with ID: 719 -ORIGINAL GRAPH NODE: GCCCCGTGGAGGGAGCCACCAGCC with ID: 720 -ORIGINAL GRAPH NODE: CCCCGTGGAGGGAGCCACCAGCCA with ID: 721 -ORIGINAL GRAPH NODE: CCCGTGGAGGGAGCCACCAGCCAC with ID: 722 -ORIGINAL GRAPH NODE: CCGTGGAGGGAGCCACCAGCCACA with ID: 723 -ORIGINAL GRAPH NODE: CGTGGAGGGAGCCACCAGCCACAG with ID: 724 -ORIGINAL GRAPH NODE: GTGGAGGGAGCCACCAGCCACAGG with ID: 725 -ORIGINAL GRAPH NODE: TGGAGGGAGCCACCAGCCACAGGT with ID: 726 -ORIGINAL GRAPH NODE: GGAGGGAGCCACCAGCCACAGGTA with ID: 727 -ORIGINAL GRAPH NODE: GAGGGAGCCACCAGCCACAGGTAC with ID: 728 -ORIGINAL GRAPH NODE: AGGGAGCCACCAGCCACAGGTACC with ID: 729 -ORIGINAL GRAPH NODE: GGGAGCCACCAGCCACAGGTACCT with ID: 730 -ORIGINAL GRAPH NODE: GGAGCCACCAGCCACAGGTACCTG with ID: 731 -ORIGINAL GRAPH NODE: GAGCCACCAGCCACAGGTACCTGA with ID: 732 -ORIGINAL GRAPH NODE: AGCCACCAGCCACAGGTACCTGAT with ID: 733 -ORIGINAL GRAPH NODE: GCCACCAGCCACAGGTACCTGATG with ID: 734 -ORIGINAL GRAPH NODE: CCACCAGCCACAGGTACCTGATGG with ID: 735 -ORIGINAL GRAPH NODE: CACCAGCCACAGGTACCTGATGGA with ID: 736 -ORIGINAL GRAPH NODE: ACCAGCCACAGGTACCTGATGGAA with ID: 737 -ORIGINAL GRAPH NODE: CCAGCCACAGGTACCTGATGGAAA with ID: 738 -ORIGINAL GRAPH NODE: CAGCCACAGGTACCTGATGGAAAT with ID: 739 -ORIGINAL GRAPH NODE: AGCCACAGGTACCTGATGGAAATG with ID: 740 -ORIGINAL GRAPH NODE: GCCACAGGTACCTGATGGAAATGC with ID: 741 -ORIGINAL GRAPH NODE: CCACAGGTACCTGATGGAAATGCC with ID: 742 -ORIGINAL GRAPH NODE: CACAGGTACCTGATGGAAATGCCG with ID: 743 -ORIGINAL GRAPH NODE: ACAGGTACCTGATGGAAATGCCGG with ID: 744 -ORIGINAL GRAPH NODE: CAGGTACCTGATGGAAATGCCGGC with ID: 745 -ORIGINAL GRAPH NODE: AGGTACCTGATGGAAATGCCGGCT with ID: 746 -ORIGINAL GRAPH NODE: GGTACCTGATGGAAATGCCGGCTC with ID: 747 -ORIGINAL GRAPH NODE: GTACCTGATGGAAATGCCGGCTCA with ID: 748 -ORIGINAL GRAPH NODE: TACCTGATGGAAATGCCGGCTCAC with ID: 749 -ORIGINAL GRAPH NODE: ACCTGATGGAAATGCCGGCTCACT with ID: 750 -ORIGINAL GRAPH NODE: CCTGATGGAAATGCCGGCTCACTT with ID: 751 -ORIGINAL GRAPH NODE: CTGATGGAAATGCCGGCTCACTTC with ID: 752 -ORIGINAL GRAPH NODE: TGATGGAAATGCCGGCTCACTTCC with ID: 753 -ORIGINAL GRAPH NODE: GATGGAAATGCCGGCTCACTTCCT with ID: 754 -ORIGINAL GRAPH NODE: ATGGAAATGCCGGCTCACTTCCTG with ID: 755 -ORIGINAL GRAPH NODE: TGGAAATGCCGGCTCACTTCCTGT with ID: 756 -ORIGINAL GRAPH NODE: GGAAATGCCGGCTCACTTCCTGTG with ID: 757 -ORIGINAL GRAPH NODE: GAAATGCCGGCTCACTTCCTGTGA with ID: 758 -ORIGINAL GRAPH NODE: GCTAGGGGAAATAGGGGAGCTCCA with ID: 786 -ORIGINAL GRAPH NODE: CTAGGGGAAATAGGGGAGCTCCAA with ID: 787 -ORIGINAL GRAPH NODE: TAGGGGAAATAGGGGAGCTCCAAA with ID: 788 -ORIGINAL GRAPH NODE: AGGGGAAATAGGGGAGCTCCAAAC with ID: 789 -ORIGINAL GRAPH NODE: GGGGAAATAGGGGAGCTCCAAACC with ID: 790 -ORIGINAL GRAPH NODE: GGGAAATAGGGGAGCTCCAAACCC with ID: 791 -ORIGINAL GRAPH NODE: GGAAATAGGGGAGCTCCAAACCCA with ID: 792 -ORIGINAL GRAPH NODE: GAAATAGGGGAGCTCCAAACCCAG with ID: 793 -ORIGINAL GRAPH NODE: AAATAGGGGAGCTCCAAACCCAGC with ID: 794 -ORIGINAL GRAPH NODE: AATAGGGGAGCTCCAAACCCAGCC with ID: 795 -ORIGINAL GRAPH NODE: ATAGGGGAGCTCCAAACCCAGCCC with ID: 796 -ORIGINAL GRAPH NODE: TAGGGGAGCTCCAAACCCAGCCCC with ID: 797 -ORIGINAL GRAPH NODE: AGGGGAGCTCCAAACCCAGCCCCG with ID: 798 -ORIGINAL GRAPH NODE: GGGGAGCTCCAAACCCAGCCCCGT with ID: 799 -ORIGINAL GRAPH NODE: GGGAGCTCCAAACCCAGCCCCGTG with ID: 800 -ORIGINAL GRAPH NODE: GGAGCTCCAAACCCAGCCCCGTGG with ID: 801 -ORIGINAL GRAPH NODE: GAGCTCCAAACCCAGCCCCGTGGA with ID: 802 -ORIGINAL GRAPH NODE: AGCTCCAAACCCAGCCCCGTGGAG with ID: 803 -ORIGINAL GRAPH NODE: GCTCCAAACCCAGCCCCGTGGAGG with ID: 804 -ORIGINAL GRAPH NODE: CTCCAAACCCAGCCCCGTGGAGGG with ID: 805 -ORIGINAL GRAPH NODE: TCCAAACCCAGCCCCGTGGAGGGA with ID: 806 -ORIGINAL GRAPH NODE: CCAAACCCAGCCCCGTGGAGGGAG with ID: 807 -ORIGINAL GRAPH NODE: CAAACCCAGCCCCGTGGAGGGAGC with ID: 808 -ORIGINAL GRAPH NODE: AAACCCAGCCCCGTGGAGGGAGCC with ID: 809 -ORIGINAL GRAPH NODE: AACCCAGCCCCGTGGAGGGAGCCA with ID: 810 -ORIGINAL GRAPH NODE: ACCCAGCCCCGTGGAGGGAGCCAC with ID: 811 -ORIGINAL GRAPH NODE: CCCAGCCCCGTGGAGGGAGCCACC with ID: 812 -ORIGINAL GRAPH NODE: GGAGCAGAGTTAGGAAGCTCCCTC with ID: 813 -ORIGINAL GRAPH NODE: GAGCAGAGTTAGGAAGCTCCCTCA with ID: 814 -ORIGINAL GRAPH NODE: AGCAGAGTTAGGAAGCTCCCTCAG with ID: 815 -ORIGINAL GRAPH NODE: GCAGAGTTAGGAAGCTCCCTCAGC with ID: 816 -ORIGINAL GRAPH NODE: CAGAGTTAGGAAGCTCCCTCAGCA with ID: 817 -ORIGINAL GRAPH NODE: AGAGTTAGGAAGCTCCCTCAGCAC with ID: 818 -ORIGINAL GRAPH NODE: GAGTTAGGAAGCTCCCTCAGCACT with ID: 819 -ORIGINAL GRAPH NODE: AGTTAGGAAGCTCCCTCAGCACTC with ID: 820 -ORIGINAL GRAPH NODE: GTTAGGAAGCTCCCTCAGCACTCT with ID: 821 -ORIGINAL GRAPH NODE: TTAGGAAGCTCCCTCAGCACTCTG with ID: 822 -ORIGINAL GRAPH NODE: TAGGAAGCTCCCTCAGCACTCTGA with ID: 823 -ORIGINAL GRAPH NODE: AGGAAGCTCCCTCAGCACTCTGAA with ID: 824 -ORIGINAL GRAPH NODE: GGAAGCTCCCTCAGCACTCTGAAC with ID: 825 -ORIGINAL GRAPH NODE: GAAGCTCCCTCAGCACTCTGAACC with ID: 826 -ORIGINAL GRAPH NODE: AAGCTCCCTCAGCACTCTGAACCC with ID: 827 -ORIGINAL GRAPH NODE: AGCTCCCTCAGCACTCTGAACCCT with ID: 828 -ORIGINAL GRAPH NODE: GCTCCCTCAGCACTCTGAACCCTG with ID: 829 -ORIGINAL GRAPH NODE: CTCCCTCAGCACTCTGAACCCTGT with ID: 830 -ORIGINAL GRAPH NODE: TCCCTCAGCACTCTGAACCCTGTG with ID: 831 -ORIGINAL GRAPH NODE: CCCTCAGCACTCTGAACCCTGTGA with ID: 832 -ORIGINAL GRAPH NODE: CCTCAGCACTCTGAACCCTGTGAG with ID: 833 -ORIGINAL GRAPH NODE: CTCAGCACTCTGAACCCTGTGAGG with ID: 834 -ORIGINAL GRAPH NODE: TCAGCACTCTGAACCCTGTGAGGC with ID: 835 -ORIGINAL GRAPH NODE: CAGCACTCTGAACCCTGTGAGGCA with ID: 836 -ORIGINAL GRAPH NODE: GGCTACAAACAGACTTCCTCAAGG with ID: 885 -ORIGINAL GRAPH NODE: GCTACAAACAGACTTCCTCAAGGC with ID: 886 -ORIGINAL GRAPH NODE: CTACAAACAGACTTCCTCAAGGCT with ID: 887 -ORIGINAL GRAPH NODE: TACAAACAGACTTCCTCAAGGCTC with ID: 888 -ORIGINAL GRAPH NODE: ACAAACAGACTTCCTCAAGGCTCA with ID: 889 -ORIGINAL GRAPH NODE: CAAACAGACTTCCTCAAGGCTCAT with ID: 890 -ORIGINAL GRAPH NODE: AAACAGACTTCCTCAAGGCTCATC with ID: 891 -ORIGINAL GRAPH NODE: AACAGACTTCCTCAAGGCTCATCA with ID: 892 -ORIGINAL GRAPH NODE: ACAGACTTCCTCAAGGCTCATCAG with ID: 893 -ORIGINAL GRAPH NODE: CAGACTTCCTCAAGGCTCATCAGC with ID: 894 -ORIGINAL GRAPH NODE: AGACTTCCTCAAGGCTCATCAGCA with ID: 895 -ORIGINAL GRAPH NODE: GACTTCCTCAAGGCTCATCAGCAA with ID: 896 -ORIGINAL GRAPH NODE: ACTTCCTCAAGGCTCATCAGCAAG with ID: 897 -ORIGINAL GRAPH NODE: CTTCCTCAAGGCTCATCAGCAAGA with ID: 898 -ORIGINAL GRAPH NODE: TTCCTCAAGGCTCATCAGCAAGAA with ID: 899 -ORIGINAL GRAPH NODE: TCCTCAAGGCTCATCAGCAAGAAG with ID: 900 -ORIGINAL GRAPH NODE: CCTCAAGGCTCATCAGCAAGAAGA with ID: 901 -ORIGINAL GRAPH NODE: CTCAAGGCTCATCAGCAAGAAGAA with ID: 902 -ORIGINAL GRAPH NODE: TCAAGGCTCATCAGCAAGAAGAAA with ID: 903 -ORIGINAL GRAPH NODE: CAAGGCTCATCAGCAAGAAGAAAT with ID: 904 -ORIGINAL GRAPH NODE: AAGGCTCATCAGCAAGAAGAAATC with ID: 905 -ORIGINAL GRAPH NODE: AGGCTCATCAGCAAGAAGAAATCT with ID: 906 -ORIGINAL GRAPH NODE: GGCTCATCAGCAAGAAGAAATCTT with ID: 907 -ORIGINAL GRAPH NODE: GCTCATCAGCAAGAAGAAATCTTT with ID: 908 -ORIGINAL GRAPH NODE: AGAATACAAAATGCCTTCCTCCAG with ID: 945 -ORIGINAL GRAPH NODE: GAATACAAAATGCCTTCCTCCAGC with ID: 946 -ORIGINAL GRAPH NODE: AATACAAAATGCCTTCCTCCAGCC with ID: 947 -ORIGINAL GRAPH NODE: ATACAAAATGCCTTCCTCCAGCCT with ID: 948 -ORIGINAL GRAPH NODE: TACAAAATGCCTTCCTCCAGCCTC with ID: 949 -ORIGINAL GRAPH NODE: ACAAAATGCCTTCCTCCAGCCTCA with ID: 950 -ORIGINAL GRAPH NODE: CAAAATGCCTTCCTCCAGCCTCAT with ID: 951 -ORIGINAL GRAPH NODE: AAAATGCCTTCCTCCAGCCTCATC with ID: 952 -ORIGINAL GRAPH NODE: AAATGCCTTCCTCCAGCCTCATCA with ID: 953 -ORIGINAL GRAPH NODE: AATGCCTTCCTCCAGCCTCATCAG with ID: 954 -ORIGINAL GRAPH NODE: ATGCCTTCCTCCAGCCTCATCAGC with ID: 955 -ORIGINAL GRAPH NODE: TGCCTTCCTCCAGCCTCATCAGCA with ID: 956 -ORIGINAL GRAPH NODE: GCCTTCCTCCAGCCTCATCAGCAG with ID: 957 -ORIGINAL GRAPH NODE: CCTTCCTCCAGCCTCATCAGCAGG with ID: 958 -ORIGINAL GRAPH NODE: CTTCCTCCAGCCTCATCAGCAGGA with ID: 959 -ORIGINAL GRAPH NODE: TTCCTCCAGCCTCATCAGCAGGAA with ID: 960 -ORIGINAL GRAPH NODE: TCCTCCAGCCTCATCAGCAGGAAG with ID: 961 -ORIGINAL GRAPH NODE: CCTCCAGCCTCATCAGCAGGAAGA with ID: 962 -ORIGINAL GRAPH NODE: CTCCAGCCTCATCAGCAGGAAGAA with ID: 963 -ORIGINAL GRAPH NODE: TCCAGCCTCATCAGCAGGAAGAAA with ID: 964 -ORIGINAL GRAPH NODE: CCAGCCTCATCAGCAGGAAGAAAT with ID: 965 -ORIGINAL GRAPH NODE: CAGCCTCATCAGCAGGAAGAAATC with ID: 966 -ORIGINAL GRAPH NODE: AGCCTCATCAGCAGGAAGAAATCT with ID: 967 -ORIGINAL GRAPH NODE: GCCTCATCAGCAGGAAGAAATCTT with ID: 968 -ORIGINAL GRAPH NODE: CCTCATCAGCAGGAAGAAATCTTT with ID: 969 -ORIGINAL GRAPH NODE: CTCATCAGCAGGAAGAAATCTTTC with ID: 970 -ORIGINAL GRAPH NODE: TCATCAGCAGGAAGAAATCTTTCT with ID: 971 -ORIGINAL GRAPH NODE: CATCAGCAGGAAGAAATCTTTCTT with ID: 972 -ORIGINAL GRAPH NODE: ATCAGCAGGAAGAAATCTTTCTTT with ID: 973 -ORIGINAL GRAPH NODE: TCAGCAGGAAGAAATCTTTCTTTC with ID: 974 -ORIGINAL GRAPH NODE: CAGCAGGAAGAAATCTTTCTTTCC with ID: 975 -ORIGINAL GRAPH NODE: AGCAGGAAGAAATCTTTCTTTCCA with ID: 976 -ORIGINAL GRAPH NODE: GCAGGAAGAAATCTTTCTTTCCAA with ID: 977 -ORIGINAL GRAPH NODE: CAGGAAGAAATCTTTCTTTCCAAG with ID: 978 -ORIGINAL GRAPH NODE: AGGAAGAAATCTTTCTTTCCAAGT with ID: 979 -ORIGINAL GRAPH NODE: GGAAGAAATCTTTCTTTCCAAGTA with ID: 980 -fixExtremeleyHighSingleEdges() -fixExtremelyHighSingleEdges() -removeLightEdges() -removeLightEdges() -SECTION -================= -REMOVING LIGHT In EDGES -================= -SECTION -================= -REMOVING LIGHT OUT EDGES -================= -SECTION -================= -REMOVING LIGHT FLOW EDGES -================= -FLOW: total in for vertex GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) is 0, total out is 2, averageCov=0 -FLOW: total in for vertex C:W-1(V381_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V382_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V383_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V384_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V385_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V386_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V387_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V388_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V389_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V390_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V391_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V392_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V393_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V394_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V395_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V396_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V397_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V398_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V399_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V400_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V401_D-1) is 2, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V402_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V403_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V404_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V405_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V406_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V407_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V408_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V409_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V410_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V411_D-1) is 4, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V412_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V413_D-1) is 6, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V414_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V415_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V416_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V417_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V418_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V419_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V420_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V421_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V422_D-1) is 6, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V423_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V424_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V425_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V426_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V427_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V428_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V429_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V430_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V431_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V432_D-1) is 8, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V433_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V434_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V435_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V436_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V437_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V438_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V439_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V440_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V441_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V442_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V443_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V444_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V445_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V446_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V447_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V448_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V449_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V450_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V451_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex T:W-1(V452_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V453_D-1) is 10, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V454_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V455_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V456_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V457_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V458_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V459_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V460_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V461_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V462_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V463_D-1) is 8, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V464_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V465_D-1) is 6, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V466_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V467_D-1) is 4, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V468_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V469_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V470_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V471_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V472_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V473_D-1) is 2, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V474_D-1) is 4, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V475_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V476_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V477_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V478_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V479_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V480_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V481_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V482_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V483_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V484_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V485_D-1) is 2, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V486_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V487_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V488_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V489_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V490_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V491_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V492_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V493_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V494_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V495_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V496_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V497_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V498_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V499_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V500_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V501_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V502_D-1) is 4, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V503_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V504_D-1) is 6, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V505_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V506_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V507_D-1) is 8, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V508_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex A:W-1(V509_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V510_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex T:W-1(V511_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex T:W-1(V512_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex A:W-1(V513_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V514_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V515_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex A:W-1(V516_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex A:W-1(V517_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V518_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex C:W-1(V519_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex T:W-1(V520_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex C:W-1(V521_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex C:W-1(V522_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex C:W-1(V523_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex T:W-1(V524_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V525_D-1) is 8, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V526_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V527_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V528_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V529_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V530_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V531_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V532_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V533_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V534_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V535_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V536_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V537_D-1) is 6, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V538_D-1) is 4, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V539_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V540_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V541_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V542_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V543_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V544_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V545_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V546_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V547_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V548_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V549_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V550_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V551_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V552_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V553_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V554_D-1) is 8, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V555_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V556_D-1) is 6, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V557_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V558_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V559_D-1) is 4, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V560_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V561_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V562_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V563_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V564_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V565_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V566_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V567_D-1) is 2, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V568_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V569_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V570_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V571_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V572_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V573_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V574_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V575_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V576_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V577_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V578_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V579_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V580_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V581_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V582_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V583_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V584_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V585_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V586_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V587_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V588_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V589_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V590_D-1) is 4, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V591_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V592_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V593_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V594_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V595_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V596_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V597_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V598_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V599_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V600_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V601_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V602_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V603_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V604_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V605_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V606_D-1) is 2, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V607_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V608_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V609_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V610_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V611_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V612_D-1) is 4, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V613_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V614_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V615_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V616_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V617_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V618_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V619_D-1) is 6, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V620_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V621_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V622_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V623_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V624_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V625_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V626_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V627_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V628_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V629_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V630_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V631_D-1) is 4, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V632_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V633_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V634_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V635_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V636_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V637_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V638_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V639_D-1) is 6, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V640_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V641_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V642_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V643_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V644_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V645_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V646_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V647_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V648_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V649_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V650_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V651_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V652_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V653_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V654_D-1) is 8, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V655_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex A:W-1(V656_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex T:W-1(V657_D-1) is 10, total out is 12, averageCov=-1 -FLOW: total in for vertex G:W-1(V658_D-1) is 12, total out is 10, averageCov=-1 -FLOW: total in for vertex A:W-1(V659_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex C:W-1(V660_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex A:W-1(V661_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V662_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex A:W-1(V663_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex C:W-1(V664_D-1) is 10, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V665_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V666_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V667_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V668_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V669_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V670_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V671_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V672_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V673_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V674_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V675_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V676_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V677_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V678_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V679_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V680_D-1) is 8, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V681_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V682_D-1) is 10, total out is 10, averageCov=-1 -FLOW: total in for vertex G:W-1(V683_D-1) is 10, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V684_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex G:W-1(V685_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex C:W-1(V686_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex T:W-1(V687_D-1) is 8, total out is 8, averageCov=-1 -FLOW: total in for vertex A:W-1(V688_D-1) is 8, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V689_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V690_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V691_D-1) is 6, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V692_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V693_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V694_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V695_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V696_D-1) is 4, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V697_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V698_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V699_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V700_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V701_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V702_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V703_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V704_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V705_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V706_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V707_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V708_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V709_D-1) is 6, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V710_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V711_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V712_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V713_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V714_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V715_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V716_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V717_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V718_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V719_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V720_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V721_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V722_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V723_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V724_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V725_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V726_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V727_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V728_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V729_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V730_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V731_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V732_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V733_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V734_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V735_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V736_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V737_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex A:W-1(V738_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex T:W-1(V739_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex G:W-1(V740_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V741_D-1) is 6, total out is 6, averageCov=-1 -FLOW: total in for vertex C:W-1(V742_D-1) is 6, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V743_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex G:W-1(V744_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V745_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex T:W-1(V746_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex C:W-1(V747_D-1) is 4, total out is 4, averageCov=-1 -FLOW: total in for vertex A:W-1(V748_D-1) is 4, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V749_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V750_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V751_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V752_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V753_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V754_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V755_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V756_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V757_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V758_D-1) is 2, total out is 0, averageCov=-1 -FLOW: total in for vertex GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) is 0, total out is 2, averageCov=0 -FLOW: total in for vertex A:W-1(V787_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V788_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V789_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V790_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V791_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V792_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V793_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V794_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V795_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V796_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V797_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V798_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V799_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V800_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V801_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V802_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V803_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V804_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V805_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V806_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V807_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V808_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V809_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V810_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V811_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V812_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V813_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V814_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V815_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V816_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V817_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V818_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V819_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V820_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V821_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V822_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V823_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V824_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V825_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V826_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V827_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V828_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V829_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V830_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V831_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V832_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V833_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V834_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V835_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V836_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V885_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V886_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V887_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V888_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V889_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V890_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V891_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V892_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V893_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V894_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V895_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V896_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V897_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V898_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V899_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V900_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V901_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V902_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V903_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V904_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V905_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V906_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V907_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V908_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) is 0, total out is 2, averageCov=0 -FLOW: total in for vertex C:W-1(V946_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V947_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V948_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V949_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V950_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V951_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V952_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V953_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V954_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V955_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V956_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V957_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V958_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V959_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V960_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V961_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V962_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V963_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V964_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V965_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V966_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V967_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V968_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V969_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V970_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V971_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V972_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V973_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V974_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex C:W-1(V975_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V976_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V977_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex G:W-1(V978_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex T:W-1(V979_D-1) is 2, total out is 2, averageCov=-1 -FLOW: total in for vertex A:W-1(V980_D-1) is 2, total out is 2, averageCov=-1 -## Node descriptions before linear compaction: -## Node descriptions: -GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) Preds: [] Succ: [C:W-1(V381_D-1) ] -C:W-1(V381_D-1) Preds: [GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) ] Succ: [A:W-1(V382_D-1) ] -A:W-1(V382_D-1) Preds: [C:W-1(V381_D-1) ] Succ: [C:W-1(V383_D-1) ] -C:W-1(V383_D-1) Preds: [A:W-1(V382_D-1) ] Succ: [A:W-1(V384_D-1) ] -A:W-1(V384_D-1) Preds: [C:W-1(V383_D-1) ] Succ: [T:W-1(V385_D-1) ] -T:W-1(V385_D-1) Preds: [A:W-1(V384_D-1) ] Succ: [T:W-1(V386_D-1) ] -T:W-1(V386_D-1) Preds: [T:W-1(V385_D-1) ] Succ: [T:W-1(V387_D-1) ] -T:W-1(V387_D-1) Preds: [T:W-1(V386_D-1) ] Succ: [C:W-1(V388_D-1) ] -C:W-1(V388_D-1) Preds: [T:W-1(V387_D-1) ] Succ: [T:W-1(V389_D-1) ] -T:W-1(V389_D-1) Preds: [C:W-1(V388_D-1) ] Succ: [A:W-1(V390_D-1) ] -A:W-1(V390_D-1) Preds: [T:W-1(V389_D-1) ] Succ: [C:W-1(V391_D-1) ] -C:W-1(V391_D-1) Preds: [A:W-1(V390_D-1) ] Succ: [T:W-1(V392_D-1) ] -T:W-1(V392_D-1) Preds: [C:W-1(V391_D-1) ] Succ: [G:W-1(V393_D-1) ] -G:W-1(V393_D-1) Preds: [T:W-1(V392_D-1) ] Succ: [G:W-1(V394_D-1) ] -G:W-1(V394_D-1) Preds: [G:W-1(V393_D-1) ] Succ: [C:W-1(V395_D-1) ] -C:W-1(V395_D-1) Preds: [G:W-1(V394_D-1) ] Succ: [T:W-1(V396_D-1) ] -T:W-1(V396_D-1) Preds: [C:W-1(V395_D-1) ] Succ: [A:W-1(V397_D-1) ] -A:W-1(V397_D-1) Preds: [T:W-1(V396_D-1) ] Succ: [C:W-1(V398_D-1) ] -C:W-1(V398_D-1) Preds: [A:W-1(V397_D-1) ] Succ: [A:W-1(V399_D-1) ] -A:W-1(V399_D-1) Preds: [C:W-1(V398_D-1) ] Succ: [A:W-1(V400_D-1) ] -A:W-1(V400_D-1) Preds: [A:W-1(V399_D-1) ] Succ: [A:W-1(V401_D-1) ] -A:W-1(V401_D-1) Preds: [A:W-1(V400_D-1) ] Succ: [C:W-1(V402_D-1) ] -C:W-1(V402_D-1) Preds: [A:W-1(V401_D-1) ] Succ: [A:W-1(V403_D-1) ] -A:W-1(V403_D-1) Preds: [C:W-1(V402_D-1) ] Succ: [G:W-1(V404_D-1) ] -G:W-1(V404_D-1) Preds: [A:W-1(V403_D-1) ] Succ: [A:W-1(V405_D-1) ] -A:W-1(V405_D-1) Preds: [G:W-1(V404_D-1) ] Succ: [C:W-1(V406_D-1) ] -C:W-1(V406_D-1) Preds: [A:W-1(V405_D-1) ] Succ: [T:W-1(V407_D-1) ] -T:W-1(V407_D-1) Preds: [C:W-1(V406_D-1) ] Succ: [T:W-1(V408_D-1) ] -T:W-1(V408_D-1) Preds: [T:W-1(V407_D-1) ] Succ: [C:W-1(V409_D-1) ] -C:W-1(V409_D-1) Preds: [T:W-1(V408_D-1) ] Succ: [C:W-1(V410_D-1) ] -C:W-1(V410_D-1) Preds: [C:W-1(V409_D-1) ] Succ: [T:W-1(V411_D-1) ] -T:W-1(V411_D-1) Preds: [C:W-1(V410_D-1) ] Succ: [C:W-1(V412_D-1) ] -C:W-1(V412_D-1) Preds: [T:W-1(V411_D-1) ] Succ: [A:W-1(V413_D-1) ] -A:W-1(V413_D-1) Preds: [C:W-1(V412_D-1) ] Succ: [A:W-1(V414_D-1) ] -A:W-1(V414_D-1) Preds: [A:W-1(V413_D-1) ] Succ: [G:W-1(V415_D-1) ] -G:W-1(V415_D-1) Preds: [A:W-1(V414_D-1) ] Succ: [C:W-1(V416_D-1) G:W-1(V885_D-1) ] -C:W-1(V416_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V417_D-1) ] -C:W-1(V417_D-1) Preds: [C:W-1(V416_D-1) ] Succ: [T:W-1(V418_D-1) ] -T:W-1(V418_D-1) Preds: [C:W-1(V417_D-1) ] Succ: [C:W-1(V419_D-1) ] -C:W-1(V419_D-1) Preds: [T:W-1(V418_D-1) ] Succ: [A:W-1(V420_D-1) ] -A:W-1(V420_D-1) Preds: [C:W-1(V419_D-1) ] Succ: [T:W-1(V421_D-1) ] -T:W-1(V421_D-1) Preds: [A:W-1(V420_D-1) ] Succ: [C:W-1(V422_D-1) ] -C:W-1(V422_D-1) Preds: [T:W-1(V421_D-1) ] Succ: [A:W-1(V423_D-1) ] -A:W-1(V423_D-1) Preds: [C:W-1(V422_D-1) ] Succ: [G:W-1(V424_D-1) ] -G:W-1(V424_D-1) Preds: [A:W-1(V423_D-1) ] Succ: [C:W-1(V425_D-1) ] -C:W-1(V425_D-1) Preds: [G:W-1(V424_D-1) ] Succ: [A:W-1(V426_D-1) ] -A:W-1(V426_D-1) Preds: [C:W-1(V425_D-1) ] Succ: [A:W-1(V427_D-1) ] -A:W-1(V427_D-1) Preds: [A:W-1(V426_D-1) ] Succ: [G:W-1(V428_D-1) ] -G:W-1(V428_D-1) Preds: [A:W-1(V427_D-1) ] Succ: [A:W-1(V429_D-1) ] -A:W-1(V429_D-1) Preds: [G:W-1(V428_D-1) ] Succ: [A:W-1(V430_D-1) ] -A:W-1(V430_D-1) Preds: [A:W-1(V429_D-1) ] Succ: [G:W-1(V431_D-1) ] -G:W-1(V431_D-1) Preds: [A:W-1(V430_D-1) ] Succ: [A:W-1(V432_D-1) ] -A:W-1(V432_D-1) Preds: [G:W-1(V431_D-1) ] Succ: [A:W-1(V433_D-1) ] -A:W-1(V433_D-1) Preds: [A:W-1(V432_D-1) ] Succ: [A:W-1(V434_D-1) ] -A:W-1(V434_D-1) Preds: [A:W-1(V433_D-1) ] Succ: [T:W-1(V435_D-1) ] -T:W-1(V435_D-1) Preds: [A:W-1(V434_D-1) ] Succ: [C:W-1(V436_D-1) ] -C:W-1(V436_D-1) Preds: [T:W-1(V435_D-1) ] Succ: [T:W-1(V437_D-1) ] -T:W-1(V437_D-1) Preds: [C:W-1(V436_D-1) ] Succ: [T:W-1(V438_D-1) ] -T:W-1(V438_D-1) Preds: [T:W-1(V437_D-1) ] Succ: [T:W-1(V439_D-1) ] -T:W-1(V439_D-1) Preds: [T:W-1(V438_D-1) ] Succ: [C:W-1(V440_D-1) ] -C:W-1(V440_D-1) Preds: [T:W-1(V439_D-1) T:W-1(V908_D-1) ] Succ: [T:W-1(V441_D-1) ] -T:W-1(V441_D-1) Preds: [C:W-1(V440_D-1) ] Succ: [T:W-1(V442_D-1) ] -T:W-1(V442_D-1) Preds: [T:W-1(V441_D-1) ] Succ: [T:W-1(V443_D-1) ] -T:W-1(V443_D-1) Preds: [T:W-1(V442_D-1) ] Succ: [C:W-1(V444_D-1) ] -C:W-1(V444_D-1) Preds: [T:W-1(V443_D-1) ] Succ: [C:W-1(V445_D-1) ] -C:W-1(V445_D-1) Preds: [C:W-1(V444_D-1) ] Succ: [A:W-1(V446_D-1) ] -A:W-1(V446_D-1) Preds: [C:W-1(V445_D-1) ] Succ: [A:W-1(V447_D-1) ] -A:W-1(V447_D-1) Preds: [A:W-1(V446_D-1) ] Succ: [G:W-1(V448_D-1) ] -G:W-1(V448_D-1) Preds: [A:W-1(V447_D-1) ] Succ: [T:W-1(V449_D-1) ] -T:W-1(V449_D-1) Preds: [G:W-1(V448_D-1) ] Succ: [A:W-1(V450_D-1) ] -A:W-1(V450_D-1) Preds: [T:W-1(V449_D-1) ] Succ: [G:W-1(V451_D-1) ] -G:W-1(V451_D-1) Preds: [A:W-1(V450_D-1) A:W-1(V980_D-1) ] Succ: [T:W-1(V452_D-1) ] -T:W-1(V452_D-1) Preds: [G:W-1(V451_D-1) ] Succ: [G:W-1(V453_D-1) ] -G:W-1(V453_D-1) Preds: [T:W-1(V452_D-1) ] Succ: [T:W-1(V454_D-1) ] -T:W-1(V454_D-1) Preds: [G:W-1(V453_D-1) ] Succ: [C:W-1(V455_D-1) ] -C:W-1(V455_D-1) Preds: [T:W-1(V454_D-1) ] Succ: [T:W-1(V456_D-1) ] -T:W-1(V456_D-1) Preds: [C:W-1(V455_D-1) ] Succ: [T:W-1(V457_D-1) ] -T:W-1(V457_D-1) Preds: [T:W-1(V456_D-1) ] Succ: [A:W-1(V458_D-1) ] -A:W-1(V458_D-1) Preds: [T:W-1(V457_D-1) ] Succ: [A:W-1(V459_D-1) ] -A:W-1(V459_D-1) Preds: [A:W-1(V458_D-1) ] Succ: [C:W-1(V460_D-1) ] -C:W-1(V460_D-1) Preds: [A:W-1(V459_D-1) ] Succ: [T:W-1(V461_D-1) ] -T:W-1(V461_D-1) Preds: [C:W-1(V460_D-1) ] Succ: [C:W-1(V462_D-1) ] -C:W-1(V462_D-1) Preds: [T:W-1(V461_D-1) ] Succ: [A:W-1(V463_D-1) ] -A:W-1(V463_D-1) Preds: [C:W-1(V462_D-1) ] Succ: [G:W-1(V464_D-1) ] -G:W-1(V464_D-1) Preds: [A:W-1(V463_D-1) ] Succ: [G:W-1(V465_D-1) ] -G:W-1(V465_D-1) Preds: [G:W-1(V464_D-1) ] Succ: [A:W-1(V466_D-1) ] -A:W-1(V466_D-1) Preds: [G:W-1(V465_D-1) ] Succ: [G:W-1(V467_D-1) ] -G:W-1(V467_D-1) Preds: [A:W-1(V466_D-1) ] Succ: [A:W-1(V468_D-1) ] -A:W-1(V468_D-1) Preds: [G:W-1(V467_D-1) ] Succ: [T:W-1(V469_D-1) ] -T:W-1(V469_D-1) Preds: [A:W-1(V468_D-1) ] Succ: [C:W-1(V470_D-1) ] -C:W-1(V470_D-1) Preds: [T:W-1(V469_D-1) ] Succ: [A:W-1(V471_D-1) ] -A:W-1(V471_D-1) Preds: [C:W-1(V470_D-1) ] Succ: [T:W-1(V472_D-1) ] -T:W-1(V472_D-1) Preds: [A:W-1(V471_D-1) ] Succ: [G:W-1(V473_D-1) ] -G:W-1(V473_D-1) Preds: [T:W-1(V472_D-1) ] Succ: [G:W-1(V474_D-1) ] -G:W-1(V474_D-1) Preds: [G:W-1(V473_D-1) ] Succ: [T:W-1(V475_D-1) ] -T:W-1(V475_D-1) Preds: [G:W-1(V474_D-1) ] Succ: [A:W-1(V476_D-1) ] -A:W-1(V476_D-1) Preds: [T:W-1(V475_D-1) ] Succ: [G:W-1(V477_D-1) ] -G:W-1(V477_D-1) Preds: [A:W-1(V476_D-1) ] Succ: [G:W-1(V478_D-1) ] -G:W-1(V478_D-1) Preds: [G:W-1(V477_D-1) ] Succ: [G:W-1(V479_D-1) ] -G:W-1(V479_D-1) Preds: [G:W-1(V478_D-1) ] Succ: [A:W-1(V480_D-1) ] -A:W-1(V480_D-1) Preds: [G:W-1(V479_D-1) ] Succ: [A:W-1(V481_D-1) ] -A:W-1(V481_D-1) Preds: [A:W-1(V480_D-1) ] Succ: [G:W-1(V482_D-1) ] -G:W-1(V482_D-1) Preds: [A:W-1(V481_D-1) ] Succ: [G:W-1(V483_D-1) ] -G:W-1(V483_D-1) Preds: [G:W-1(V482_D-1) ] Succ: [G:W-1(V484_D-1) ] -G:W-1(V484_D-1) Preds: [G:W-1(V483_D-1) ] Succ: [G:W-1(V485_D-1) ] -G:W-1(V485_D-1) Preds: [G:W-1(V484_D-1) ] Succ: [T:W-1(V486_D-1) ] -T:W-1(V486_D-1) Preds: [G:W-1(V485_D-1) ] Succ: [C:W-1(V487_D-1) ] -C:W-1(V487_D-1) Preds: [T:W-1(V486_D-1) ] Succ: [A:W-1(V488_D-1) ] -A:W-1(V488_D-1) Preds: [C:W-1(V487_D-1) ] Succ: [G:W-1(V489_D-1) ] -G:W-1(V489_D-1) Preds: [A:W-1(V488_D-1) ] Succ: [G:W-1(V490_D-1) ] -G:W-1(V490_D-1) Preds: [G:W-1(V489_D-1) ] Succ: [C:W-1(V491_D-1) ] -C:W-1(V491_D-1) Preds: [G:W-1(V490_D-1) ] Succ: [C:W-1(V492_D-1) ] -C:W-1(V492_D-1) Preds: [C:W-1(V491_D-1) ] Succ: [A:W-1(V493_D-1) ] -A:W-1(V493_D-1) Preds: [C:W-1(V492_D-1) ] Succ: [C:W-1(V494_D-1) ] -C:W-1(V494_D-1) Preds: [A:W-1(V493_D-1) ] Succ: [T:W-1(V495_D-1) ] -T:W-1(V495_D-1) Preds: [C:W-1(V494_D-1) ] Succ: [T:W-1(V496_D-1) ] -T:W-1(V496_D-1) Preds: [T:W-1(V495_D-1) ] Succ: [C:W-1(V497_D-1) ] -C:W-1(V497_D-1) Preds: [T:W-1(V496_D-1) ] Succ: [A:W-1(V498_D-1) ] -A:W-1(V498_D-1) Preds: [C:W-1(V497_D-1) ] Succ: [C:W-1(V499_D-1) ] -C:W-1(V499_D-1) Preds: [A:W-1(V498_D-1) ] Succ: [A:W-1(V500_D-1) ] -A:W-1(V500_D-1) Preds: [C:W-1(V499_D-1) ] Succ: [A:W-1(V501_D-1) ] -A:W-1(V501_D-1) Preds: [A:W-1(V500_D-1) ] Succ: [G:W-1(V502_D-1) ] -G:W-1(V502_D-1) Preds: [A:W-1(V501_D-1) ] Succ: [G:W-1(V503_D-1) ] -G:W-1(V503_D-1) Preds: [G:W-1(V502_D-1) ] Succ: [A:W-1(V504_D-1) ] -A:W-1(V504_D-1) Preds: [G:W-1(V503_D-1) ] Succ: [G:W-1(V505_D-1) ] -G:W-1(V505_D-1) Preds: [A:W-1(V504_D-1) ] Succ: [C:W-1(V506_D-1) ] -C:W-1(V506_D-1) Preds: [G:W-1(V505_D-1) ] Succ: [A:W-1(V507_D-1) ] -A:W-1(V507_D-1) Preds: [C:W-1(V506_D-1) ] Succ: [G:W-1(V508_D-1) ] -G:W-1(V508_D-1) Preds: [A:W-1(V507_D-1) ] Succ: [A:W-1(V509_D-1) ] -A:W-1(V509_D-1) Preds: [G:W-1(V508_D-1) ] Succ: [G:W-1(V510_D-1) ] -G:W-1(V510_D-1) Preds: [A:W-1(V509_D-1) ] Succ: [T:W-1(V511_D-1) ] -T:W-1(V511_D-1) Preds: [G:W-1(V510_D-1) ] Succ: [T:W-1(V512_D-1) ] -T:W-1(V512_D-1) Preds: [T:W-1(V511_D-1) ] Succ: [A:W-1(V513_D-1) ] -A:W-1(V513_D-1) Preds: [T:W-1(V512_D-1) ] Succ: [G:W-1(V514_D-1) ] -G:W-1(V514_D-1) Preds: [A:W-1(V513_D-1) ] Succ: [G:W-1(V515_D-1) ] -G:W-1(V515_D-1) Preds: [G:W-1(V514_D-1) ] Succ: [A:W-1(V516_D-1) ] -A:W-1(V516_D-1) Preds: [G:W-1(V515_D-1) ] Succ: [A:W-1(V517_D-1) ] -A:W-1(V517_D-1) Preds: [A:W-1(V516_D-1) ] Succ: [G:W-1(V518_D-1) ] -G:W-1(V518_D-1) Preds: [A:W-1(V517_D-1) ] Succ: [C:W-1(V519_D-1) ] -C:W-1(V519_D-1) Preds: [G:W-1(V518_D-1) ] Succ: [T:W-1(V520_D-1) ] -T:W-1(V520_D-1) Preds: [C:W-1(V519_D-1) ] Succ: [C:W-1(V521_D-1) ] -C:W-1(V521_D-1) Preds: [T:W-1(V520_D-1) ] Succ: [C:W-1(V522_D-1) ] -C:W-1(V522_D-1) Preds: [C:W-1(V521_D-1) ] Succ: [C:W-1(V523_D-1) ] -C:W-1(V523_D-1) Preds: [C:W-1(V522_D-1) ] Succ: [T:W-1(V524_D-1) ] -T:W-1(V524_D-1) Preds: [C:W-1(V523_D-1) ] Succ: [G:W-1(V525_D-1) C:W-1(V813_D-1) ] -G:W-1(V525_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V526_D-1) ] -A:W-1(V526_D-1) Preds: [G:W-1(V525_D-1) ] Succ: [G:W-1(V527_D-1) ] -G:W-1(V527_D-1) Preds: [A:W-1(V526_D-1) ] Succ: [C:W-1(V528_D-1) ] -C:W-1(V528_D-1) Preds: [G:W-1(V527_D-1) ] Succ: [A:W-1(V529_D-1) ] -A:W-1(V529_D-1) Preds: [C:W-1(V528_D-1) ] Succ: [C:W-1(V530_D-1) ] -C:W-1(V530_D-1) Preds: [A:W-1(V529_D-1) ] Succ: [T:W-1(V531_D-1) ] -T:W-1(V531_D-1) Preds: [C:W-1(V530_D-1) ] Succ: [C:W-1(V532_D-1) ] -C:W-1(V532_D-1) Preds: [T:W-1(V531_D-1) ] Succ: [T:W-1(V533_D-1) ] -T:W-1(V533_D-1) Preds: [C:W-1(V532_D-1) ] Succ: [G:W-1(V534_D-1) ] -G:W-1(V534_D-1) Preds: [T:W-1(V533_D-1) ] Succ: [A:W-1(V535_D-1) ] -A:W-1(V535_D-1) Preds: [G:W-1(V534_D-1) ] Succ: [A:W-1(V536_D-1) ] -A:W-1(V536_D-1) Preds: [A:W-1(V535_D-1) ] Succ: [C:W-1(V537_D-1) ] -C:W-1(V537_D-1) Preds: [A:W-1(V536_D-1) ] Succ: [C:W-1(V538_D-1) ] -C:W-1(V538_D-1) Preds: [C:W-1(V537_D-1) ] Succ: [C:W-1(V539_D-1) ] -C:W-1(V539_D-1) Preds: [C:W-1(V538_D-1) ] Succ: [T:W-1(V540_D-1) ] -T:W-1(V540_D-1) Preds: [C:W-1(V539_D-1) ] Succ: [G:W-1(V541_D-1) ] -G:W-1(V541_D-1) Preds: [T:W-1(V540_D-1) ] Succ: [T:W-1(V542_D-1) ] -T:W-1(V542_D-1) Preds: [G:W-1(V541_D-1) ] Succ: [G:W-1(V543_D-1) ] -G:W-1(V543_D-1) Preds: [T:W-1(V542_D-1) ] Succ: [A:W-1(V544_D-1) ] -A:W-1(V544_D-1) Preds: [G:W-1(V543_D-1) ] Succ: [G:W-1(V545_D-1) ] -G:W-1(V545_D-1) Preds: [A:W-1(V544_D-1) ] Succ: [G:W-1(V546_D-1) ] -G:W-1(V546_D-1) Preds: [G:W-1(V545_D-1) ] Succ: [C:W-1(V547_D-1) ] -C:W-1(V547_D-1) Preds: [G:W-1(V546_D-1) ] Succ: [A:W-1(V548_D-1) ] -A:W-1(V548_D-1) Preds: [C:W-1(V547_D-1) ] Succ: [A:W-1(V549_D-1) ] -A:W-1(V549_D-1) Preds: [A:W-1(V548_D-1) A:W-1(V836_D-1) ] Succ: [G:W-1(V550_D-1) ] -G:W-1(V550_D-1) Preds: [A:W-1(V549_D-1) ] Succ: [T:W-1(V551_D-1) ] -T:W-1(V551_D-1) Preds: [G:W-1(V550_D-1) ] Succ: [C:W-1(V552_D-1) ] -C:W-1(V552_D-1) Preds: [T:W-1(V551_D-1) ] Succ: [C:W-1(V553_D-1) ] -C:W-1(V553_D-1) Preds: [C:W-1(V552_D-1) ] Succ: [A:W-1(V554_D-1) ] -A:W-1(V554_D-1) Preds: [C:W-1(V553_D-1) ] Succ: [C:W-1(V555_D-1) ] -C:W-1(V555_D-1) Preds: [A:W-1(V554_D-1) ] Succ: [C:W-1(V556_D-1) ] -C:W-1(V556_D-1) Preds: [C:W-1(V555_D-1) ] Succ: [A:W-1(V557_D-1) ] -A:W-1(V557_D-1) Preds: [C:W-1(V556_D-1) ] Succ: [C:W-1(V558_D-1) ] -C:W-1(V558_D-1) Preds: [A:W-1(V557_D-1) ] Succ: [C:W-1(V559_D-1) ] -C:W-1(V559_D-1) Preds: [C:W-1(V558_D-1) ] Succ: [A:W-1(V560_D-1) ] -A:W-1(V560_D-1) Preds: [C:W-1(V559_D-1) ] Succ: [G:W-1(V561_D-1) ] -G:W-1(V561_D-1) Preds: [A:W-1(V560_D-1) ] Succ: [C:W-1(V562_D-1) ] -C:W-1(V562_D-1) Preds: [G:W-1(V561_D-1) ] Succ: [G:W-1(V563_D-1) ] -G:W-1(V563_D-1) Preds: [C:W-1(V562_D-1) ] Succ: [T:W-1(V564_D-1) ] -T:W-1(V564_D-1) Preds: [G:W-1(V563_D-1) ] Succ: [A:W-1(V565_D-1) ] -A:W-1(V565_D-1) Preds: [T:W-1(V564_D-1) ] Succ: [T:W-1(V566_D-1) ] -T:W-1(V566_D-1) Preds: [A:W-1(V565_D-1) ] Succ: [C:W-1(V567_D-1) ] -C:W-1(V567_D-1) Preds: [T:W-1(V566_D-1) ] Succ: [T:W-1(V568_D-1) ] -T:W-1(V568_D-1) Preds: [C:W-1(V567_D-1) ] Succ: [A:W-1(V569_D-1) ] -A:W-1(V569_D-1) Preds: [T:W-1(V568_D-1) ] Succ: [G:W-1(V570_D-1) ] -G:W-1(V570_D-1) Preds: [A:W-1(V569_D-1) ] Succ: [A:W-1(V571_D-1) ] -A:W-1(V571_D-1) Preds: [G:W-1(V570_D-1) ] Succ: [C:W-1(V572_D-1) ] -C:W-1(V572_D-1) Preds: [A:W-1(V571_D-1) ] Succ: [C:W-1(V573_D-1) ] -C:W-1(V573_D-1) Preds: [C:W-1(V572_D-1) ] Succ: [C:W-1(V574_D-1) ] -C:W-1(V574_D-1) Preds: [C:W-1(V573_D-1) ] Succ: [A:W-1(V575_D-1) ] -A:W-1(V575_D-1) Preds: [C:W-1(V574_D-1) ] Succ: [G:W-1(V576_D-1) ] -G:W-1(V576_D-1) Preds: [A:W-1(V575_D-1) ] Succ: [G:W-1(V577_D-1) ] -G:W-1(V577_D-1) Preds: [G:W-1(V576_D-1) ] Succ: [C:W-1(V578_D-1) ] -C:W-1(V578_D-1) Preds: [G:W-1(V577_D-1) ] Succ: [C:W-1(V579_D-1) ] -C:W-1(V579_D-1) Preds: [C:W-1(V578_D-1) ] Succ: [A:W-1(V580_D-1) ] -A:W-1(V580_D-1) Preds: [C:W-1(V579_D-1) ] Succ: [T:W-1(V581_D-1) ] -T:W-1(V581_D-1) Preds: [A:W-1(V580_D-1) ] Succ: [C:W-1(V582_D-1) ] -C:W-1(V582_D-1) Preds: [T:W-1(V581_D-1) ] Succ: [T:W-1(V583_D-1) ] -T:W-1(V583_D-1) Preds: [C:W-1(V582_D-1) ] Succ: [A:W-1(V584_D-1) ] -A:W-1(V584_D-1) Preds: [T:W-1(V583_D-1) ] Succ: [A:W-1(V585_D-1) ] -A:W-1(V585_D-1) Preds: [A:W-1(V584_D-1) ] Succ: [T:W-1(V586_D-1) ] -T:W-1(V586_D-1) Preds: [A:W-1(V585_D-1) ] Succ: [A:W-1(V587_D-1) ] -A:W-1(V587_D-1) Preds: [T:W-1(V586_D-1) ] Succ: [A:W-1(V588_D-1) ] -A:W-1(V588_D-1) Preds: [A:W-1(V587_D-1) ] Succ: [A:W-1(V589_D-1) ] -A:W-1(V589_D-1) Preds: [A:W-1(V588_D-1) ] Succ: [G:W-1(V590_D-1) ] -G:W-1(V590_D-1) Preds: [A:W-1(V589_D-1) ] Succ: [G:W-1(V591_D-1) ] -G:W-1(V591_D-1) Preds: [G:W-1(V590_D-1) ] Succ: [A:W-1(V592_D-1) ] -A:W-1(V592_D-1) Preds: [G:W-1(V591_D-1) ] Succ: [A:W-1(V593_D-1) ] -A:W-1(V593_D-1) Preds: [A:W-1(V592_D-1) ] Succ: [A:W-1(V594_D-1) ] -A:W-1(V594_D-1) Preds: [A:W-1(V593_D-1) ] Succ: [A:W-1(V595_D-1) ] -A:W-1(V595_D-1) Preds: [A:W-1(V594_D-1) ] Succ: [C:W-1(V596_D-1) ] -C:W-1(V596_D-1) Preds: [A:W-1(V595_D-1) ] Succ: [T:W-1(V597_D-1) ] -T:W-1(V597_D-1) Preds: [C:W-1(V596_D-1) ] Succ: [G:W-1(V598_D-1) ] -G:W-1(V598_D-1) Preds: [T:W-1(V597_D-1) ] Succ: [C:W-1(V599_D-1) ] -C:W-1(V599_D-1) Preds: [G:W-1(V598_D-1) ] Succ: [A:W-1(V600_D-1) ] -A:W-1(V600_D-1) Preds: [C:W-1(V599_D-1) ] Succ: [T:W-1(V601_D-1) ] -T:W-1(V601_D-1) Preds: [A:W-1(V600_D-1) ] Succ: [C:W-1(V602_D-1) ] -C:W-1(V602_D-1) Preds: [T:W-1(V601_D-1) ] Succ: [T:W-1(V603_D-1) ] -T:W-1(V603_D-1) Preds: [C:W-1(V602_D-1) ] Succ: [T:W-1(V604_D-1) ] -T:W-1(V604_D-1) Preds: [T:W-1(V603_D-1) ] Succ: [T:W-1(V605_D-1) ] -T:W-1(V605_D-1) Preds: [T:W-1(V604_D-1) ] Succ: [G:W-1(V606_D-1) ] -G:W-1(V606_D-1) Preds: [T:W-1(V605_D-1) ] Succ: [C:W-1(V607_D-1) ] -C:W-1(V607_D-1) Preds: [G:W-1(V606_D-1) ] Succ: [C:W-1(V608_D-1) ] -C:W-1(V608_D-1) Preds: [C:W-1(V607_D-1) ] Succ: [C:W-1(V609_D-1) ] -C:W-1(V609_D-1) Preds: [C:W-1(V608_D-1) ] Succ: [A:W-1(V610_D-1) ] -A:W-1(V610_D-1) Preds: [C:W-1(V609_D-1) ] Succ: [C:W-1(V611_D-1) ] -C:W-1(V611_D-1) Preds: [A:W-1(V610_D-1) ] Succ: [A:W-1(V612_D-1) ] -A:W-1(V612_D-1) Preds: [C:W-1(V611_D-1) ] Succ: [T:W-1(V613_D-1) ] -T:W-1(V613_D-1) Preds: [A:W-1(V612_D-1) ] Succ: [G:W-1(V614_D-1) ] -G:W-1(V614_D-1) Preds: [T:W-1(V613_D-1) ] Succ: [A:W-1(V615_D-1) ] -A:W-1(V615_D-1) Preds: [G:W-1(V614_D-1) ] Succ: [T:W-1(V616_D-1) ] -T:W-1(V616_D-1) Preds: [A:W-1(V615_D-1) ] Succ: [G:W-1(V617_D-1) ] -G:W-1(V617_D-1) Preds: [T:W-1(V616_D-1) ] Succ: [C:W-1(V618_D-1) ] -C:W-1(V618_D-1) Preds: [G:W-1(V617_D-1) ] Succ: [T:W-1(V619_D-1) ] -T:W-1(V619_D-1) Preds: [C:W-1(V618_D-1) ] Succ: [T:W-1(V620_D-1) ] -T:W-1(V620_D-1) Preds: [T:W-1(V619_D-1) ] Succ: [G:W-1(V621_D-1) ] -G:W-1(V621_D-1) Preds: [T:W-1(V620_D-1) ] Succ: [G:W-1(V622_D-1) ] -G:W-1(V622_D-1) Preds: [G:W-1(V621_D-1) ] Succ: [T:W-1(V623_D-1) ] -T:W-1(V623_D-1) Preds: [G:W-1(V622_D-1) ] Succ: [T:W-1(V624_D-1) ] -T:W-1(V624_D-1) Preds: [T:W-1(V623_D-1) ] Succ: [A:W-1(V625_D-1) ] -A:W-1(V625_D-1) Preds: [T:W-1(V624_D-1) ] Succ: [A:W-1(V626_D-1) ] -A:W-1(V626_D-1) Preds: [A:W-1(V625_D-1) ] Succ: [G:W-1(V627_D-1) ] -G:W-1(V627_D-1) Preds: [A:W-1(V626_D-1) ] Succ: [A:W-1(V628_D-1) ] -A:W-1(V628_D-1) Preds: [G:W-1(V627_D-1) ] Succ: [C:W-1(V629_D-1) ] -C:W-1(V629_D-1) Preds: [A:W-1(V628_D-1) ] Succ: [A:W-1(V630_D-1) ] -A:W-1(V630_D-1) Preds: [C:W-1(V629_D-1) ] Succ: [A:W-1(V631_D-1) ] -A:W-1(V631_D-1) Preds: [A:W-1(V630_D-1) ] Succ: [G:W-1(V632_D-1) ] -G:W-1(V632_D-1) Preds: [A:W-1(V631_D-1) ] Succ: [G:W-1(V633_D-1) ] -G:W-1(V633_D-1) Preds: [G:W-1(V632_D-1) ] Succ: [G:W-1(V634_D-1) ] -G:W-1(V634_D-1) Preds: [G:W-1(V633_D-1) ] Succ: [G:W-1(V635_D-1) ] -G:W-1(V635_D-1) Preds: [G:W-1(V634_D-1) ] Succ: [T:W-1(V636_D-1) ] -T:W-1(V636_D-1) Preds: [G:W-1(V635_D-1) ] Succ: [T:W-1(V637_D-1) ] -T:W-1(V637_D-1) Preds: [T:W-1(V636_D-1) ] Succ: [A:W-1(V638_D-1) ] -A:W-1(V638_D-1) Preds: [T:W-1(V637_D-1) ] Succ: [G:W-1(V639_D-1) ] -G:W-1(V639_D-1) Preds: [A:W-1(V638_D-1) ] Succ: [T:W-1(V640_D-1) ] -T:W-1(V640_D-1) Preds: [G:W-1(V639_D-1) ] Succ: [G:W-1(V641_D-1) ] -G:W-1(V641_D-1) Preds: [T:W-1(V640_D-1) ] Succ: [A:W-1(V642_D-1) ] -A:W-1(V642_D-1) Preds: [G:W-1(V641_D-1) ] Succ: [C:W-1(V643_D-1) ] -C:W-1(V643_D-1) Preds: [A:W-1(V642_D-1) ] Succ: [A:W-1(V644_D-1) ] -A:W-1(V644_D-1) Preds: [C:W-1(V643_D-1) ] Succ: [A:W-1(V645_D-1) ] -A:W-1(V645_D-1) Preds: [A:W-1(V644_D-1) ] Succ: [A:W-1(V646_D-1) ] -A:W-1(V646_D-1) Preds: [A:W-1(V645_D-1) ] Succ: [G:W-1(V647_D-1) ] -G:W-1(V647_D-1) Preds: [A:W-1(V646_D-1) ] Succ: [T:W-1(V648_D-1) ] -T:W-1(V648_D-1) Preds: [G:W-1(V647_D-1) ] Succ: [A:W-1(V649_D-1) ] -A:W-1(V649_D-1) Preds: [T:W-1(V648_D-1) ] Succ: [A:W-1(V650_D-1) ] -A:W-1(V650_D-1) Preds: [A:W-1(V649_D-1) ] Succ: [A:W-1(V651_D-1) ] -A:W-1(V651_D-1) Preds: [A:W-1(V650_D-1) ] Succ: [G:W-1(V652_D-1) ] -G:W-1(V652_D-1) Preds: [A:W-1(V651_D-1) ] Succ: [A:W-1(V653_D-1) ] -A:W-1(V653_D-1) Preds: [G:W-1(V652_D-1) ] Succ: [G:W-1(V654_D-1) ] -G:W-1(V654_D-1) Preds: [A:W-1(V653_D-1) ] Succ: [G:W-1(V655_D-1) ] -G:W-1(V655_D-1) Preds: [G:W-1(V654_D-1) ] Succ: [A:W-1(V656_D-1) ] -A:W-1(V656_D-1) Preds: [G:W-1(V655_D-1) ] Succ: [T:W-1(V657_D-1) ] -T:W-1(V657_D-1) Preds: [A:W-1(V656_D-1) ] Succ: [G:W-1(V658_D-1) ] -G:W-1(V658_D-1) Preds: [T:W-1(V657_D-1) ] Succ: [A:W-1(V659_D-1) ] -A:W-1(V659_D-1) Preds: [G:W-1(V658_D-1) ] Succ: [C:W-1(V660_D-1) ] -C:W-1(V660_D-1) Preds: [A:W-1(V659_D-1) ] Succ: [A:W-1(V661_D-1) ] -A:W-1(V661_D-1) Preds: [C:W-1(V660_D-1) ] Succ: [G:W-1(V662_D-1) ] -G:W-1(V662_D-1) Preds: [A:W-1(V661_D-1) ] Succ: [A:W-1(V663_D-1) ] -A:W-1(V663_D-1) Preds: [G:W-1(V662_D-1) ] Succ: [C:W-1(V664_D-1) ] -C:W-1(V664_D-1) Preds: [A:W-1(V663_D-1) ] Succ: [T:W-1(V665_D-1) ] -T:W-1(V665_D-1) Preds: [C:W-1(V664_D-1) ] Succ: [C:W-1(V666_D-1) ] -C:W-1(V666_D-1) Preds: [T:W-1(V665_D-1) ] Succ: [T:W-1(V667_D-1) ] -T:W-1(V667_D-1) Preds: [C:W-1(V666_D-1) ] Succ: [C:W-1(V668_D-1) ] -C:W-1(V668_D-1) Preds: [T:W-1(V667_D-1) ] Succ: [T:W-1(V669_D-1) ] -T:W-1(V669_D-1) Preds: [C:W-1(V668_D-1) ] Succ: [A:W-1(V670_D-1) ] -A:W-1(V670_D-1) Preds: [T:W-1(V669_D-1) ] Succ: [A:W-1(V671_D-1) ] -A:W-1(V671_D-1) Preds: [A:W-1(V670_D-1) ] Succ: [G:W-1(V672_D-1) ] -G:W-1(V672_D-1) Preds: [A:W-1(V671_D-1) ] Succ: [G:W-1(V673_D-1) ] -G:W-1(V673_D-1) Preds: [G:W-1(V672_D-1) ] Succ: [G:W-1(V674_D-1) ] -G:W-1(V674_D-1) Preds: [G:W-1(V673_D-1) ] Succ: [A:W-1(V675_D-1) ] -A:W-1(V675_D-1) Preds: [G:W-1(V674_D-1) ] Succ: [C:W-1(V676_D-1) ] -C:W-1(V676_D-1) Preds: [A:W-1(V675_D-1) ] Succ: [A:W-1(V677_D-1) ] -A:W-1(V677_D-1) Preds: [C:W-1(V676_D-1) ] Succ: [T:W-1(V678_D-1) ] -T:W-1(V678_D-1) Preds: [A:W-1(V677_D-1) ] Succ: [A:W-1(V679_D-1) ] -A:W-1(V679_D-1) Preds: [T:W-1(V678_D-1) ] Succ: [T:W-1(V680_D-1) ] -T:W-1(V680_D-1) Preds: [A:W-1(V679_D-1) ] Succ: [G:W-1(V681_D-1) ] -G:W-1(V681_D-1) Preds: [T:W-1(V680_D-1) ] Succ: [G:W-1(V682_D-1) ] -G:W-1(V682_D-1) Preds: [G:W-1(V681_D-1) ] Succ: [G:W-1(V683_D-1) ] -G:W-1(V683_D-1) Preds: [G:W-1(V682_D-1) ] Succ: [A:W-1(V684_D-1) ] -A:W-1(V684_D-1) Preds: [G:W-1(V683_D-1) ] Succ: [G:W-1(V685_D-1) ] -G:W-1(V685_D-1) Preds: [A:W-1(V684_D-1) ] Succ: [C:W-1(V686_D-1) ] -C:W-1(V686_D-1) Preds: [G:W-1(V685_D-1) ] Succ: [T:W-1(V687_D-1) ] -T:W-1(V687_D-1) Preds: [C:W-1(V686_D-1) ] Succ: [A:W-1(V688_D-1) ] -A:W-1(V688_D-1) Preds: [T:W-1(V687_D-1) ] Succ: [C:W-1(V689_D-1) ] -C:W-1(V689_D-1) Preds: [A:W-1(V688_D-1) ] Succ: [A:W-1(V690_D-1) ] -A:W-1(V690_D-1) Preds: [C:W-1(V689_D-1) ] Succ: [T:W-1(V691_D-1) ] -T:W-1(V691_D-1) Preds: [A:W-1(V690_D-1) ] Succ: [A:W-1(V692_D-1) ] -A:W-1(V692_D-1) Preds: [T:W-1(V691_D-1) ] Succ: [G:W-1(V693_D-1) ] -G:W-1(V693_D-1) Preds: [A:W-1(V692_D-1) ] Succ: [C:W-1(V694_D-1) ] -C:W-1(V694_D-1) Preds: [G:W-1(V693_D-1) ] Succ: [C:W-1(V695_D-1) ] -C:W-1(V695_D-1) Preds: [C:W-1(V694_D-1) ] Succ: [A:W-1(V696_D-1) ] -A:W-1(V696_D-1) Preds: [C:W-1(V695_D-1) ] Succ: [G:W-1(V697_D-1) ] -G:W-1(V697_D-1) Preds: [A:W-1(V696_D-1) ] Succ: [C:W-1(V698_D-1) ] -C:W-1(V698_D-1) Preds: [G:W-1(V697_D-1) ] Succ: [C:W-1(V699_D-1) ] -C:W-1(V699_D-1) Preds: [C:W-1(V698_D-1) ] Succ: [C:W-1(V700_D-1) ] -C:W-1(V700_D-1) Preds: [C:W-1(V699_D-1) ] Succ: [C:W-1(V701_D-1) ] -C:W-1(V701_D-1) Preds: [C:W-1(V700_D-1) ] Succ: [G:W-1(V702_D-1) ] -G:W-1(V702_D-1) Preds: [C:W-1(V701_D-1) ] Succ: [T:W-1(V703_D-1) ] -T:W-1(V703_D-1) Preds: [G:W-1(V702_D-1) ] Succ: [G:W-1(V704_D-1) ] -G:W-1(V704_D-1) Preds: [T:W-1(V703_D-1) ] Succ: [G:W-1(V705_D-1) ] -G:W-1(V705_D-1) Preds: [G:W-1(V704_D-1) ] Succ: [A:W-1(V706_D-1) ] -A:W-1(V706_D-1) Preds: [G:W-1(V705_D-1) ] Succ: [G:W-1(V707_D-1) ] -G:W-1(V707_D-1) Preds: [A:W-1(V706_D-1) ] Succ: [G:W-1(V708_D-1) ] -G:W-1(V708_D-1) Preds: [G:W-1(V707_D-1) ] Succ: [G:W-1(V709_D-1) ] -G:W-1(V709_D-1) Preds: [G:W-1(V708_D-1) ] Succ: [A:W-1(V710_D-1) ] -A:W-1(V710_D-1) Preds: [G:W-1(V709_D-1) ] Succ: [G:W-1(V711_D-1) ] -G:W-1(V711_D-1) Preds: [A:W-1(V710_D-1) ] Succ: [C:W-1(V712_D-1) ] -C:W-1(V712_D-1) Preds: [G:W-1(V711_D-1) ] Succ: [C:W-1(V713_D-1) ] -C:W-1(V713_D-1) Preds: [C:W-1(V712_D-1) ] Succ: [A:W-1(V714_D-1) ] -A:W-1(V714_D-1) Preds: [C:W-1(V713_D-1) ] Succ: [C:W-1(V715_D-1) ] -C:W-1(V715_D-1) Preds: [A:W-1(V714_D-1) ] Succ: [C:W-1(V716_D-1) ] -C:W-1(V716_D-1) Preds: [C:W-1(V715_D-1) ] Succ: [A:W-1(V717_D-1) ] -A:W-1(V717_D-1) Preds: [C:W-1(V716_D-1) C:W-1(V812_D-1) ] Succ: [G:W-1(V718_D-1) ] -G:W-1(V718_D-1) Preds: [A:W-1(V717_D-1) ] Succ: [C:W-1(V719_D-1) ] -C:W-1(V719_D-1) Preds: [G:W-1(V718_D-1) ] Succ: [C:W-1(V720_D-1) ] -C:W-1(V720_D-1) Preds: [C:W-1(V719_D-1) ] Succ: [A:W-1(V721_D-1) ] -A:W-1(V721_D-1) Preds: [C:W-1(V720_D-1) ] Succ: [C:W-1(V722_D-1) ] -C:W-1(V722_D-1) Preds: [A:W-1(V721_D-1) ] Succ: [A:W-1(V723_D-1) ] -A:W-1(V723_D-1) Preds: [C:W-1(V722_D-1) ] Succ: [G:W-1(V724_D-1) ] -G:W-1(V724_D-1) Preds: [A:W-1(V723_D-1) ] Succ: [G:W-1(V725_D-1) ] -G:W-1(V725_D-1) Preds: [G:W-1(V724_D-1) ] Succ: [T:W-1(V726_D-1) ] -T:W-1(V726_D-1) Preds: [G:W-1(V725_D-1) ] Succ: [A:W-1(V727_D-1) ] -A:W-1(V727_D-1) Preds: [T:W-1(V726_D-1) ] Succ: [C:W-1(V728_D-1) ] -C:W-1(V728_D-1) Preds: [A:W-1(V727_D-1) ] Succ: [C:W-1(V729_D-1) ] -C:W-1(V729_D-1) Preds: [C:W-1(V728_D-1) ] Succ: [T:W-1(V730_D-1) ] -T:W-1(V730_D-1) Preds: [C:W-1(V729_D-1) ] Succ: [G:W-1(V731_D-1) ] -G:W-1(V731_D-1) Preds: [T:W-1(V730_D-1) ] Succ: [A:W-1(V732_D-1) ] -A:W-1(V732_D-1) Preds: [G:W-1(V731_D-1) ] Succ: [T:W-1(V733_D-1) ] -T:W-1(V733_D-1) Preds: [A:W-1(V732_D-1) ] Succ: [G:W-1(V734_D-1) ] -G:W-1(V734_D-1) Preds: [T:W-1(V733_D-1) ] Succ: [G:W-1(V735_D-1) ] -G:W-1(V735_D-1) Preds: [G:W-1(V734_D-1) ] Succ: [A:W-1(V736_D-1) ] -A:W-1(V736_D-1) Preds: [G:W-1(V735_D-1) ] Succ: [A:W-1(V737_D-1) ] -A:W-1(V737_D-1) Preds: [A:W-1(V736_D-1) ] Succ: [A:W-1(V738_D-1) ] -A:W-1(V738_D-1) Preds: [A:W-1(V737_D-1) ] Succ: [T:W-1(V739_D-1) ] -T:W-1(V739_D-1) Preds: [A:W-1(V738_D-1) ] Succ: [G:W-1(V740_D-1) ] -G:W-1(V740_D-1) Preds: [T:W-1(V739_D-1) ] Succ: [C:W-1(V741_D-1) ] -C:W-1(V741_D-1) Preds: [G:W-1(V740_D-1) ] Succ: [C:W-1(V742_D-1) ] -C:W-1(V742_D-1) Preds: [C:W-1(V741_D-1) ] Succ: [G:W-1(V743_D-1) ] -G:W-1(V743_D-1) Preds: [C:W-1(V742_D-1) ] Succ: [G:W-1(V744_D-1) ] -G:W-1(V744_D-1) Preds: [G:W-1(V743_D-1) ] Succ: [C:W-1(V745_D-1) ] -C:W-1(V745_D-1) Preds: [G:W-1(V744_D-1) ] Succ: [T:W-1(V746_D-1) ] -T:W-1(V746_D-1) Preds: [C:W-1(V745_D-1) ] Succ: [C:W-1(V747_D-1) ] -C:W-1(V747_D-1) Preds: [T:W-1(V746_D-1) ] Succ: [A:W-1(V748_D-1) ] -A:W-1(V748_D-1) Preds: [C:W-1(V747_D-1) ] Succ: [C:W-1(V749_D-1) ] -C:W-1(V749_D-1) Preds: [A:W-1(V748_D-1) ] Succ: [T:W-1(V750_D-1) ] -T:W-1(V750_D-1) Preds: [C:W-1(V749_D-1) ] Succ: [T:W-1(V751_D-1) ] -T:W-1(V751_D-1) Preds: [T:W-1(V750_D-1) ] Succ: [C:W-1(V752_D-1) ] -C:W-1(V752_D-1) Preds: [T:W-1(V751_D-1) ] Succ: [C:W-1(V753_D-1) ] -C:W-1(V753_D-1) Preds: [C:W-1(V752_D-1) ] Succ: [T:W-1(V754_D-1) ] -T:W-1(V754_D-1) Preds: [C:W-1(V753_D-1) ] Succ: [G:W-1(V755_D-1) ] -G:W-1(V755_D-1) Preds: [T:W-1(V754_D-1) ] Succ: [T:W-1(V756_D-1) ] -T:W-1(V756_D-1) Preds: [G:W-1(V755_D-1) ] Succ: [G:W-1(V757_D-1) ] -G:W-1(V757_D-1) Preds: [T:W-1(V756_D-1) ] Succ: [A:W-1(V758_D-1) ] -A:W-1(V758_D-1) Preds: [G:W-1(V757_D-1) ] Succ: [] -GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) Preds: [] Succ: [A:W-1(V787_D-1) ] -A:W-1(V787_D-1) Preds: [GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) ] Succ: [A:W-1(V788_D-1) ] -A:W-1(V788_D-1) Preds: [A:W-1(V787_D-1) ] Succ: [C:W-1(V789_D-1) ] -C:W-1(V789_D-1) Preds: [A:W-1(V788_D-1) ] Succ: [C:W-1(V790_D-1) ] -C:W-1(V790_D-1) Preds: [C:W-1(V789_D-1) ] Succ: [C:W-1(V791_D-1) ] -C:W-1(V791_D-1) Preds: [C:W-1(V790_D-1) ] Succ: [A:W-1(V792_D-1) ] -A:W-1(V792_D-1) Preds: [C:W-1(V791_D-1) ] Succ: [G:W-1(V793_D-1) ] -G:W-1(V793_D-1) Preds: [A:W-1(V792_D-1) ] Succ: [C:W-1(V794_D-1) ] -C:W-1(V794_D-1) Preds: [G:W-1(V793_D-1) ] Succ: [C:W-1(V795_D-1) ] -C:W-1(V795_D-1) Preds: [C:W-1(V794_D-1) ] Succ: [C:W-1(V796_D-1) ] -C:W-1(V796_D-1) Preds: [C:W-1(V795_D-1) ] Succ: [C:W-1(V797_D-1) ] -C:W-1(V797_D-1) Preds: [C:W-1(V796_D-1) ] Succ: [G:W-1(V798_D-1) ] -G:W-1(V798_D-1) Preds: [C:W-1(V797_D-1) ] Succ: [T:W-1(V799_D-1) ] -T:W-1(V799_D-1) Preds: [G:W-1(V798_D-1) ] Succ: [G:W-1(V800_D-1) ] -G:W-1(V800_D-1) Preds: [T:W-1(V799_D-1) ] Succ: [G:W-1(V801_D-1) ] -G:W-1(V801_D-1) Preds: [G:W-1(V800_D-1) ] Succ: [A:W-1(V802_D-1) ] -A:W-1(V802_D-1) Preds: [G:W-1(V801_D-1) ] Succ: [G:W-1(V803_D-1) ] -G:W-1(V803_D-1) Preds: [A:W-1(V802_D-1) ] Succ: [G:W-1(V804_D-1) ] -G:W-1(V804_D-1) Preds: [G:W-1(V803_D-1) ] Succ: [G:W-1(V805_D-1) ] -G:W-1(V805_D-1) Preds: [G:W-1(V804_D-1) ] Succ: [A:W-1(V806_D-1) ] -A:W-1(V806_D-1) Preds: [G:W-1(V805_D-1) ] Succ: [G:W-1(V807_D-1) ] -G:W-1(V807_D-1) Preds: [A:W-1(V806_D-1) ] Succ: [C:W-1(V808_D-1) ] -C:W-1(V808_D-1) Preds: [G:W-1(V807_D-1) ] Succ: [C:W-1(V809_D-1) ] -C:W-1(V809_D-1) Preds: [C:W-1(V808_D-1) ] Succ: [A:W-1(V810_D-1) ] -A:W-1(V810_D-1) Preds: [C:W-1(V809_D-1) ] Succ: [C:W-1(V811_D-1) ] -C:W-1(V811_D-1) Preds: [A:W-1(V810_D-1) ] Succ: [C:W-1(V812_D-1) ] -C:W-1(V812_D-1) Preds: [C:W-1(V811_D-1) ] Succ: [A:W-1(V717_D-1) ] -C:W-1(V813_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V814_D-1) ] -A:W-1(V814_D-1) Preds: [C:W-1(V813_D-1) ] Succ: [G:W-1(V815_D-1) ] -G:W-1(V815_D-1) Preds: [A:W-1(V814_D-1) ] Succ: [C:W-1(V816_D-1) ] -C:W-1(V816_D-1) Preds: [G:W-1(V815_D-1) ] Succ: [A:W-1(V817_D-1) ] -A:W-1(V817_D-1) Preds: [C:W-1(V816_D-1) ] Succ: [C:W-1(V818_D-1) ] -C:W-1(V818_D-1) Preds: [A:W-1(V817_D-1) ] Succ: [T:W-1(V819_D-1) ] -T:W-1(V819_D-1) Preds: [C:W-1(V818_D-1) ] Succ: [C:W-1(V820_D-1) ] -C:W-1(V820_D-1) Preds: [T:W-1(V819_D-1) ] Succ: [T:W-1(V821_D-1) ] -T:W-1(V821_D-1) Preds: [C:W-1(V820_D-1) ] Succ: [G:W-1(V822_D-1) ] -G:W-1(V822_D-1) Preds: [T:W-1(V821_D-1) ] Succ: [A:W-1(V823_D-1) ] -A:W-1(V823_D-1) Preds: [G:W-1(V822_D-1) ] Succ: [A:W-1(V824_D-1) ] -A:W-1(V824_D-1) Preds: [A:W-1(V823_D-1) ] Succ: [C:W-1(V825_D-1) ] -C:W-1(V825_D-1) Preds: [A:W-1(V824_D-1) ] Succ: [C:W-1(V826_D-1) ] -C:W-1(V826_D-1) Preds: [C:W-1(V825_D-1) ] Succ: [C:W-1(V827_D-1) ] -C:W-1(V827_D-1) Preds: [C:W-1(V826_D-1) ] Succ: [T:W-1(V828_D-1) ] -T:W-1(V828_D-1) Preds: [C:W-1(V827_D-1) ] Succ: [G:W-1(V829_D-1) ] -G:W-1(V829_D-1) Preds: [T:W-1(V828_D-1) ] Succ: [T:W-1(V830_D-1) ] -T:W-1(V830_D-1) Preds: [G:W-1(V829_D-1) ] Succ: [G:W-1(V831_D-1) ] -G:W-1(V831_D-1) Preds: [T:W-1(V830_D-1) ] Succ: [A:W-1(V832_D-1) ] -A:W-1(V832_D-1) Preds: [G:W-1(V831_D-1) ] Succ: [G:W-1(V833_D-1) ] -G:W-1(V833_D-1) Preds: [A:W-1(V832_D-1) ] Succ: [G:W-1(V834_D-1) ] -G:W-1(V834_D-1) Preds: [G:W-1(V833_D-1) ] Succ: [C:W-1(V835_D-1) ] -C:W-1(V835_D-1) Preds: [G:W-1(V834_D-1) ] Succ: [A:W-1(V836_D-1) ] -A:W-1(V836_D-1) Preds: [C:W-1(V835_D-1) ] Succ: [A:W-1(V549_D-1) ] -G:W-1(V885_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V886_D-1) ] -C:W-1(V886_D-1) Preds: [G:W-1(V885_D-1) ] Succ: [T:W-1(V887_D-1) ] -T:W-1(V887_D-1) Preds: [C:W-1(V886_D-1) ] Succ: [C:W-1(V888_D-1) ] -C:W-1(V888_D-1) Preds: [T:W-1(V887_D-1) ] Succ: [A:W-1(V889_D-1) ] -A:W-1(V889_D-1) Preds: [C:W-1(V888_D-1) ] Succ: [T:W-1(V890_D-1) ] -T:W-1(V890_D-1) Preds: [A:W-1(V889_D-1) ] Succ: [C:W-1(V891_D-1) ] -C:W-1(V891_D-1) Preds: [T:W-1(V890_D-1) ] Succ: [A:W-1(V892_D-1) ] -A:W-1(V892_D-1) Preds: [C:W-1(V891_D-1) ] Succ: [G:W-1(V893_D-1) ] -G:W-1(V893_D-1) Preds: [A:W-1(V892_D-1) ] Succ: [C:W-1(V894_D-1) ] -C:W-1(V894_D-1) Preds: [G:W-1(V893_D-1) ] Succ: [A:W-1(V895_D-1) ] -A:W-1(V895_D-1) Preds: [C:W-1(V894_D-1) ] Succ: [A:W-1(V896_D-1) ] -A:W-1(V896_D-1) Preds: [A:W-1(V895_D-1) ] Succ: [G:W-1(V897_D-1) ] -G:W-1(V897_D-1) Preds: [A:W-1(V896_D-1) ] Succ: [A:W-1(V898_D-1) ] -A:W-1(V898_D-1) Preds: [G:W-1(V897_D-1) ] Succ: [A:W-1(V899_D-1) ] -A:W-1(V899_D-1) Preds: [A:W-1(V898_D-1) ] Succ: [G:W-1(V900_D-1) ] -G:W-1(V900_D-1) Preds: [A:W-1(V899_D-1) ] Succ: [A:W-1(V901_D-1) ] -A:W-1(V901_D-1) Preds: [G:W-1(V900_D-1) ] Succ: [A:W-1(V902_D-1) ] -A:W-1(V902_D-1) Preds: [A:W-1(V901_D-1) ] Succ: [A:W-1(V903_D-1) ] -A:W-1(V903_D-1) Preds: [A:W-1(V902_D-1) ] Succ: [T:W-1(V904_D-1) ] -T:W-1(V904_D-1) Preds: [A:W-1(V903_D-1) ] Succ: [C:W-1(V905_D-1) ] -C:W-1(V905_D-1) Preds: [T:W-1(V904_D-1) ] Succ: [T:W-1(V906_D-1) ] -T:W-1(V906_D-1) Preds: [C:W-1(V905_D-1) ] Succ: [T:W-1(V907_D-1) ] -T:W-1(V907_D-1) Preds: [T:W-1(V906_D-1) ] Succ: [T:W-1(V908_D-1) ] -T:W-1(V908_D-1) Preds: [T:W-1(V907_D-1) ] Succ: [C:W-1(V440_D-1) ] -AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) Preds: [] Succ: [C:W-1(V946_D-1) ] -C:W-1(V946_D-1) Preds: [AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) ] Succ: [C:W-1(V947_D-1) ] -C:W-1(V947_D-1) Preds: [C:W-1(V946_D-1) ] Succ: [T:W-1(V948_D-1) ] -T:W-1(V948_D-1) Preds: [C:W-1(V947_D-1) ] Succ: [C:W-1(V949_D-1) ] -C:W-1(V949_D-1) Preds: [T:W-1(V948_D-1) ] Succ: [A:W-1(V950_D-1) ] -A:W-1(V950_D-1) Preds: [C:W-1(V949_D-1) ] Succ: [T:W-1(V951_D-1) ] -T:W-1(V951_D-1) Preds: [A:W-1(V950_D-1) ] Succ: [C:W-1(V952_D-1) ] -C:W-1(V952_D-1) Preds: [T:W-1(V951_D-1) ] Succ: [A:W-1(V953_D-1) ] -A:W-1(V953_D-1) Preds: [C:W-1(V952_D-1) ] Succ: [G:W-1(V954_D-1) ] -G:W-1(V954_D-1) Preds: [A:W-1(V953_D-1) ] Succ: [C:W-1(V955_D-1) ] -C:W-1(V955_D-1) Preds: [G:W-1(V954_D-1) ] Succ: [A:W-1(V956_D-1) ] -A:W-1(V956_D-1) Preds: [C:W-1(V955_D-1) ] Succ: [G:W-1(V957_D-1) ] -G:W-1(V957_D-1) Preds: [A:W-1(V956_D-1) ] Succ: [G:W-1(V958_D-1) ] -G:W-1(V958_D-1) Preds: [G:W-1(V957_D-1) ] Succ: [A:W-1(V959_D-1) ] -A:W-1(V959_D-1) Preds: [G:W-1(V958_D-1) ] Succ: [A:W-1(V960_D-1) ] -A:W-1(V960_D-1) Preds: [A:W-1(V959_D-1) ] Succ: [G:W-1(V961_D-1) ] -G:W-1(V961_D-1) Preds: [A:W-1(V960_D-1) ] Succ: [A:W-1(V962_D-1) ] -A:W-1(V962_D-1) Preds: [G:W-1(V961_D-1) ] Succ: [A:W-1(V963_D-1) ] -A:W-1(V963_D-1) Preds: [A:W-1(V962_D-1) ] Succ: [A:W-1(V964_D-1) ] -A:W-1(V964_D-1) Preds: [A:W-1(V963_D-1) ] Succ: [T:W-1(V965_D-1) ] -T:W-1(V965_D-1) Preds: [A:W-1(V964_D-1) ] Succ: [C:W-1(V966_D-1) ] -C:W-1(V966_D-1) Preds: [T:W-1(V965_D-1) ] Succ: [T:W-1(V967_D-1) ] -T:W-1(V967_D-1) Preds: [C:W-1(V966_D-1) ] Succ: [T:W-1(V968_D-1) ] -T:W-1(V968_D-1) Preds: [T:W-1(V967_D-1) ] Succ: [T:W-1(V969_D-1) ] -T:W-1(V969_D-1) Preds: [T:W-1(V968_D-1) ] Succ: [C:W-1(V970_D-1) ] -C:W-1(V970_D-1) Preds: [T:W-1(V969_D-1) ] Succ: [T:W-1(V971_D-1) ] -T:W-1(V971_D-1) Preds: [C:W-1(V970_D-1) ] Succ: [T:W-1(V972_D-1) ] -T:W-1(V972_D-1) Preds: [T:W-1(V971_D-1) ] Succ: [T:W-1(V973_D-1) ] -T:W-1(V973_D-1) Preds: [T:W-1(V972_D-1) ] Succ: [C:W-1(V974_D-1) ] -C:W-1(V974_D-1) Preds: [T:W-1(V973_D-1) ] Succ: [C:W-1(V975_D-1) ] -C:W-1(V975_D-1) Preds: [C:W-1(V974_D-1) ] Succ: [A:W-1(V976_D-1) ] -A:W-1(V976_D-1) Preds: [C:W-1(V975_D-1) ] Succ: [A:W-1(V977_D-1) ] -A:W-1(V977_D-1) Preds: [A:W-1(V976_D-1) ] Succ: [G:W-1(V978_D-1) ] -G:W-1(V978_D-1) Preds: [A:W-1(V977_D-1) ] Succ: [T:W-1(V979_D-1) ] -T:W-1(V979_D-1) Preds: [G:W-1(V978_D-1) ] Succ: [A:W-1(V980_D-1) ] -A:W-1(V980_D-1) Preds: [T:W-1(V979_D-1) ] Succ: [G:W-1(V451_D-1) ] -compactLinearPaths() -SECTION -================= -COMPACTING THE GRAPH -================= -Found potential edge: Edge(380->381,w:2.0) between GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) and C:W-1(V381_D-1) -removing vertex C:W-1(V381_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1) -Want to move edge Edge(381->382,w:2.0)(C:W-1(V381_D-1)->A:W-1(V382_D-1)) to (GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1)->A:W-1(V382_D-1) - adding edge: GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1) to A:W-1(V382_D-1) -removing edge Edge(381->382,w:2.0)(C:W-1(V381_D-1)->A:W-1(V382_D-1)) -removing edge Edge(380->381,w:2.0)(GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1)->C:W-1(V381_D-1)) -Found potential edge: Edge(380->382,w:2.0) between GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1) and A:W-1(V382_D-1) -removing vertex A:W-1(V382_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1) -Want to move edge Edge(382->383,w:2.0)(A:W-1(V382_D-1)->C:W-1(V383_D-1)) to (GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1)->C:W-1(V383_D-1) - adding edge: GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1) to C:W-1(V383_D-1) -removing edge Edge(382->383,w:2.0)(A:W-1(V382_D-1)->C:W-1(V383_D-1)) -removing edge Edge(380->382,w:2.0)(GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1)->A:W-1(V382_D-1)) -Found potential edge: Edge(380->383,w:2.0) between GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1) and C:W-1(V383_D-1) -removing vertex C:W-1(V383_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1) -Want to move edge Edge(383->384,w:2.0)(C:W-1(V383_D-1)->A:W-1(V384_D-1)) to (GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1)->A:W-1(V384_D-1) - adding edge: GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1) to A:W-1(V384_D-1) -removing edge Edge(383->384,w:2.0)(C:W-1(V383_D-1)->A:W-1(V384_D-1)) -removing edge Edge(380->383,w:2.0)(GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1)->C:W-1(V383_D-1)) -Found potential edge: Edge(380->384,w:2.0) between GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1) and A:W-1(V384_D-1) -removing vertex A:W-1(V384_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1) -Want to move edge Edge(384->385,w:2.0)(A:W-1(V384_D-1)->T:W-1(V385_D-1)) to (GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1)->T:W-1(V385_D-1) - adding edge: GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1) to T:W-1(V385_D-1) -removing edge Edge(384->385,w:2.0)(A:W-1(V384_D-1)->T:W-1(V385_D-1)) -removing edge Edge(380->384,w:2.0)(GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1)->A:W-1(V384_D-1)) -Found potential edge: Edge(380->385,w:2.0) between GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1) and T:W-1(V385_D-1) -removing vertex T:W-1(V385_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1) -Want to move edge Edge(385->386,w:2.0)(T:W-1(V385_D-1)->T:W-1(V386_D-1)) to (GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1)->T:W-1(V386_D-1) - adding edge: GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1) to T:W-1(V386_D-1) -removing edge Edge(385->386,w:2.0)(T:W-1(V385_D-1)->T:W-1(V386_D-1)) -removing edge Edge(380->385,w:2.0)(GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1)->T:W-1(V385_D-1)) -Found potential edge: Edge(380->386,w:2.0) between GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1) and T:W-1(V386_D-1) -removing vertex T:W-1(V386_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1) -Want to move edge Edge(386->387,w:2.0)(T:W-1(V386_D-1)->T:W-1(V387_D-1)) to (GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1)->T:W-1(V387_D-1) - adding edge: GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1) to T:W-1(V387_D-1) -removing edge Edge(386->387,w:2.0)(T:W-1(V386_D-1)->T:W-1(V387_D-1)) -removing edge Edge(380->386,w:2.0)(GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1)->T:W-1(V386_D-1)) -Found potential edge: Edge(380->387,w:2.0) between GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1) and T:W-1(V387_D-1) -removing vertex T:W-1(V387_D-1) was concatenated into GGCCACACGA...GTCCACATTT:W0(V380_D-1) -Want to move edge Edge(387->388,w:2.0)(T:W-1(V387_D-1)->C:W-1(V388_D-1)) to (GGCCACACGA...GTCCACATTT:W0(V380_D-1)->C:W-1(V388_D-1) - adding edge: GGCCACACGA...GTCCACATTT:W0(V380_D-1) to C:W-1(V388_D-1) -removing edge Edge(387->388,w:2.0)(T:W-1(V387_D-1)->C:W-1(V388_D-1)) -removing edge Edge(380->387,w:2.0)(GGCCACACGA...GTCCACATTT:W0(V380_D-1)->T:W-1(V387_D-1)) -Found potential edge: Edge(380->388,w:2.0) between GGCCACACGA...GTCCACATTT:W0(V380_D-1) and C:W-1(V388_D-1) -removing vertex C:W-1(V388_D-1) was concatenated into GGCCACACGA...TCCACATTTC:W1(V380_D-1) -Want to move edge Edge(388->389,w:2.0)(C:W-1(V388_D-1)->T:W-1(V389_D-1)) to (GGCCACACGA...TCCACATTTC:W1(V380_D-1)->T:W-1(V389_D-1) - adding edge: GGCCACACGA...TCCACATTTC:W1(V380_D-1) to T:W-1(V389_D-1) -removing edge Edge(388->389,w:2.0)(C:W-1(V388_D-1)->T:W-1(V389_D-1)) -removing edge Edge(380->388,w:2.0)(GGCCACACGA...TCCACATTTC:W1(V380_D-1)->C:W-1(V388_D-1)) -Found potential edge: Edge(380->389,w:2.0) between GGCCACACGA...TCCACATTTC:W1(V380_D-1) and T:W-1(V389_D-1) -removing vertex T:W-1(V389_D-1) was concatenated into GGCCACACGA...CCACATTTCT:W1(V380_D-1) -Want to move edge Edge(389->390,w:2.0)(T:W-1(V389_D-1)->A:W-1(V390_D-1)) to (GGCCACACGA...CCACATTTCT:W1(V380_D-1)->A:W-1(V390_D-1) - adding edge: GGCCACACGA...CCACATTTCT:W1(V380_D-1) to A:W-1(V390_D-1) -removing edge Edge(389->390,w:2.0)(T:W-1(V389_D-1)->A:W-1(V390_D-1)) -removing edge Edge(380->389,w:2.0)(GGCCACACGA...CCACATTTCT:W1(V380_D-1)->T:W-1(V389_D-1)) -Found potential edge: Edge(380->390,w:2.0) between GGCCACACGA...CCACATTTCT:W1(V380_D-1) and A:W-1(V390_D-1) -removing vertex A:W-1(V390_D-1) was concatenated into GGCCACACGA...CACATTTCTA:W1(V380_D-1) -Want to move edge Edge(390->391,w:2.0)(A:W-1(V390_D-1)->C:W-1(V391_D-1)) to (GGCCACACGA...CACATTTCTA:W1(V380_D-1)->C:W-1(V391_D-1) - adding edge: GGCCACACGA...CACATTTCTA:W1(V380_D-1) to C:W-1(V391_D-1) -removing edge Edge(390->391,w:2.0)(A:W-1(V390_D-1)->C:W-1(V391_D-1)) -removing edge Edge(380->390,w:2.0)(GGCCACACGA...CACATTTCTA:W1(V380_D-1)->A:W-1(V390_D-1)) -Found potential edge: Edge(380->391,w:2.0) between GGCCACACGA...CACATTTCTA:W1(V380_D-1) and C:W-1(V391_D-1) -removing vertex C:W-1(V391_D-1) was concatenated into GGCCACACGA...ACATTTCTAC:W1(V380_D-1) -Want to move edge Edge(391->392,w:2.0)(C:W-1(V391_D-1)->T:W-1(V392_D-1)) to (GGCCACACGA...ACATTTCTAC:W1(V380_D-1)->T:W-1(V392_D-1) - adding edge: GGCCACACGA...ACATTTCTAC:W1(V380_D-1) to T:W-1(V392_D-1) -removing edge Edge(391->392,w:2.0)(C:W-1(V391_D-1)->T:W-1(V392_D-1)) -removing edge Edge(380->391,w:2.0)(GGCCACACGA...ACATTTCTAC:W1(V380_D-1)->C:W-1(V391_D-1)) -Found potential edge: Edge(380->392,w:2.0) between GGCCACACGA...ACATTTCTAC:W1(V380_D-1) and T:W-1(V392_D-1) -removing vertex T:W-1(V392_D-1) was concatenated into GGCCACACGA...CATTTCTACT:W1(V380_D-1) -Want to move edge Edge(392->393,w:2.0)(T:W-1(V392_D-1)->G:W-1(V393_D-1)) to (GGCCACACGA...CATTTCTACT:W1(V380_D-1)->G:W-1(V393_D-1) - adding edge: GGCCACACGA...CATTTCTACT:W1(V380_D-1) to G:W-1(V393_D-1) -removing edge Edge(392->393,w:2.0)(T:W-1(V392_D-1)->G:W-1(V393_D-1)) -removing edge Edge(380->392,w:2.0)(GGCCACACGA...CATTTCTACT:W1(V380_D-1)->T:W-1(V392_D-1)) -Found potential edge: Edge(380->393,w:2.0) between GGCCACACGA...CATTTCTACT:W1(V380_D-1) and G:W-1(V393_D-1) -removing vertex G:W-1(V393_D-1) was concatenated into GGCCACACGA...ATTTCTACTG:W1(V380_D-1) -Want to move edge Edge(393->394,w:2.0)(G:W-1(V393_D-1)->G:W-1(V394_D-1)) to (GGCCACACGA...ATTTCTACTG:W1(V380_D-1)->G:W-1(V394_D-1) - adding edge: GGCCACACGA...ATTTCTACTG:W1(V380_D-1) to G:W-1(V394_D-1) -removing edge Edge(393->394,w:2.0)(G:W-1(V393_D-1)->G:W-1(V394_D-1)) -removing edge Edge(380->393,w:2.0)(GGCCACACGA...ATTTCTACTG:W1(V380_D-1)->G:W-1(V393_D-1)) -Found potential edge: Edge(380->394,w:2.0) between GGCCACACGA...ATTTCTACTG:W1(V380_D-1) and G:W-1(V394_D-1) -removing vertex G:W-1(V394_D-1) was concatenated into GGCCACACGA...TTTCTACTGG:W1(V380_D-1) -Want to move edge Edge(394->395,w:2.0)(G:W-1(V394_D-1)->C:W-1(V395_D-1)) to (GGCCACACGA...TTTCTACTGG:W1(V380_D-1)->C:W-1(V395_D-1) - adding edge: GGCCACACGA...TTTCTACTGG:W1(V380_D-1) to C:W-1(V395_D-1) -removing edge Edge(394->395,w:2.0)(G:W-1(V394_D-1)->C:W-1(V395_D-1)) -removing edge Edge(380->394,w:2.0)(GGCCACACGA...TTTCTACTGG:W1(V380_D-1)->G:W-1(V394_D-1)) -Found potential edge: Edge(380->395,w:2.0) between GGCCACACGA...TTTCTACTGG:W1(V380_D-1) and C:W-1(V395_D-1) -removing vertex C:W-1(V395_D-1) was concatenated into GGCCACACGA...TTCTACTGGC:W1(V380_D-1) -Want to move edge Edge(395->396,w:2.0)(C:W-1(V395_D-1)->T:W-1(V396_D-1)) to (GGCCACACGA...TTCTACTGGC:W1(V380_D-1)->T:W-1(V396_D-1) - adding edge: GGCCACACGA...TTCTACTGGC:W1(V380_D-1) to T:W-1(V396_D-1) -removing edge Edge(395->396,w:2.0)(C:W-1(V395_D-1)->T:W-1(V396_D-1)) -removing edge Edge(380->395,w:2.0)(GGCCACACGA...TTCTACTGGC:W1(V380_D-1)->C:W-1(V395_D-1)) -Found potential edge: Edge(380->396,w:2.0) between GGCCACACGA...TTCTACTGGC:W1(V380_D-1) and T:W-1(V396_D-1) -removing vertex T:W-1(V396_D-1) was concatenated into GGCCACACGA...TCTACTGGCT:W1(V380_D-1) -Want to move edge Edge(396->397,w:2.0)(T:W-1(V396_D-1)->A:W-1(V397_D-1)) to (GGCCACACGA...TCTACTGGCT:W1(V380_D-1)->A:W-1(V397_D-1) - adding edge: GGCCACACGA...TCTACTGGCT:W1(V380_D-1) to A:W-1(V397_D-1) -removing edge Edge(396->397,w:2.0)(T:W-1(V396_D-1)->A:W-1(V397_D-1)) -removing edge Edge(380->396,w:2.0)(GGCCACACGA...TCTACTGGCT:W1(V380_D-1)->T:W-1(V396_D-1)) -Found potential edge: Edge(380->397,w:2.0) between GGCCACACGA...TCTACTGGCT:W1(V380_D-1) and A:W-1(V397_D-1) -removing vertex A:W-1(V397_D-1) was concatenated into GGCCACACGA...CTACTGGCTA:W1(V380_D-1) -Want to move edge Edge(397->398,w:2.0)(A:W-1(V397_D-1)->C:W-1(V398_D-1)) to (GGCCACACGA...CTACTGGCTA:W1(V380_D-1)->C:W-1(V398_D-1) - adding edge: GGCCACACGA...CTACTGGCTA:W1(V380_D-1) to C:W-1(V398_D-1) -removing edge Edge(397->398,w:2.0)(A:W-1(V397_D-1)->C:W-1(V398_D-1)) -removing edge Edge(380->397,w:2.0)(GGCCACACGA...CTACTGGCTA:W1(V380_D-1)->A:W-1(V397_D-1)) -Found potential edge: Edge(380->398,w:2.0) between GGCCACACGA...CTACTGGCTA:W1(V380_D-1) and C:W-1(V398_D-1) -removing vertex C:W-1(V398_D-1) was concatenated into GGCCACACGA...TACTGGCTAC:W1(V380_D-1) -Want to move edge Edge(398->399,w:2.0)(C:W-1(V398_D-1)->A:W-1(V399_D-1)) to (GGCCACACGA...TACTGGCTAC:W1(V380_D-1)->A:W-1(V399_D-1) - adding edge: GGCCACACGA...TACTGGCTAC:W1(V380_D-1) to A:W-1(V399_D-1) -removing edge Edge(398->399,w:2.0)(C:W-1(V398_D-1)->A:W-1(V399_D-1)) -removing edge Edge(380->398,w:2.0)(GGCCACACGA...TACTGGCTAC:W1(V380_D-1)->C:W-1(V398_D-1)) -Found potential edge: Edge(380->399,w:2.0) between GGCCACACGA...TACTGGCTAC:W1(V380_D-1) and A:W-1(V399_D-1) -removing vertex A:W-1(V399_D-1) was concatenated into GGCCACACGA...ACTGGCTACA:W1(V380_D-1) -Want to move edge Edge(399->400,w:2.0)(A:W-1(V399_D-1)->A:W-1(V400_D-1)) to (GGCCACACGA...ACTGGCTACA:W1(V380_D-1)->A:W-1(V400_D-1) - adding edge: GGCCACACGA...ACTGGCTACA:W1(V380_D-1) to A:W-1(V400_D-1) -removing edge Edge(399->400,w:2.0)(A:W-1(V399_D-1)->A:W-1(V400_D-1)) -removing edge Edge(380->399,w:2.0)(GGCCACACGA...ACTGGCTACA:W1(V380_D-1)->A:W-1(V399_D-1)) -Found potential edge: Edge(380->400,w:2.0) between GGCCACACGA...ACTGGCTACA:W1(V380_D-1) and A:W-1(V400_D-1) -removing vertex A:W-1(V400_D-1) was concatenated into GGCCACACGA...CTGGCTACAA:W1(V380_D-1) -Want to move edge Edge(400->401,w:2.0)(A:W-1(V400_D-1)->A:W-1(V401_D-1)) to (GGCCACACGA...CTGGCTACAA:W1(V380_D-1)->A:W-1(V401_D-1) - adding edge: GGCCACACGA...CTGGCTACAA:W1(V380_D-1) to A:W-1(V401_D-1) -removing edge Edge(400->401,w:2.0)(A:W-1(V400_D-1)->A:W-1(V401_D-1)) -removing edge Edge(380->400,w:2.0)(GGCCACACGA...CTGGCTACAA:W1(V380_D-1)->A:W-1(V400_D-1)) -Found potential edge: Edge(380->401,w:2.0) between GGCCACACGA...CTGGCTACAA:W1(V380_D-1) and A:W-1(V401_D-1) -removing vertex A:W-1(V401_D-1) was concatenated into GGCCACACGA...TGGCTACAAA:W1(V380_D-1) -Want to move edge Edge(401->402,w:4.0)(A:W-1(V401_D-1)->C:W-1(V402_D-1)) to (GGCCACACGA...TGGCTACAAA:W1(V380_D-1)->C:W-1(V402_D-1) - adding edge: GGCCACACGA...TGGCTACAAA:W1(V380_D-1) to C:W-1(V402_D-1) -removing edge Edge(401->402,w:4.0)(A:W-1(V401_D-1)->C:W-1(V402_D-1)) -removing edge Edge(380->401,w:2.0)(GGCCACACGA...TGGCTACAAA:W1(V380_D-1)->A:W-1(V401_D-1)) -Found potential edge: Edge(380->402,w:4.0) between GGCCACACGA...TGGCTACAAA:W1(V380_D-1) and C:W-1(V402_D-1) -removing vertex C:W-1(V402_D-1) was concatenated into GGCCACACGA...GGCTACAAAC:W1(V380_D-1) -Want to move edge Edge(402->403,w:4.0)(C:W-1(V402_D-1)->A:W-1(V403_D-1)) to (GGCCACACGA...GGCTACAAAC:W1(V380_D-1)->A:W-1(V403_D-1) - adding edge: GGCCACACGA...GGCTACAAAC:W1(V380_D-1) to A:W-1(V403_D-1) -removing edge Edge(402->403,w:4.0)(C:W-1(V402_D-1)->A:W-1(V403_D-1)) -removing edge Edge(380->402,w:4.0)(GGCCACACGA...GGCTACAAAC:W1(V380_D-1)->C:W-1(V402_D-1)) -Found potential edge: Edge(380->403,w:4.0) between GGCCACACGA...GGCTACAAAC:W1(V380_D-1) and A:W-1(V403_D-1) -removing vertex A:W-1(V403_D-1) was concatenated into GGCCACACGA...GCTACAAACA:W1(V380_D-1) -Want to move edge Edge(403->404,w:4.0)(A:W-1(V403_D-1)->G:W-1(V404_D-1)) to (GGCCACACGA...GCTACAAACA:W1(V380_D-1)->G:W-1(V404_D-1) - adding edge: GGCCACACGA...GCTACAAACA:W1(V380_D-1) to G:W-1(V404_D-1) -removing edge Edge(403->404,w:4.0)(A:W-1(V403_D-1)->G:W-1(V404_D-1)) -removing edge Edge(380->403,w:4.0)(GGCCACACGA...GCTACAAACA:W1(V380_D-1)->A:W-1(V403_D-1)) -Found potential edge: Edge(380->404,w:4.0) between GGCCACACGA...GCTACAAACA:W1(V380_D-1) and G:W-1(V404_D-1) -removing vertex G:W-1(V404_D-1) was concatenated into GGCCACACGA...CTACAAACAG:W1(V380_D-1) -Want to move edge Edge(404->405,w:4.0)(G:W-1(V404_D-1)->A:W-1(V405_D-1)) to (GGCCACACGA...CTACAAACAG:W1(V380_D-1)->A:W-1(V405_D-1) - adding edge: GGCCACACGA...CTACAAACAG:W1(V380_D-1) to A:W-1(V405_D-1) -removing edge Edge(404->405,w:4.0)(G:W-1(V404_D-1)->A:W-1(V405_D-1)) -removing edge Edge(380->404,w:4.0)(GGCCACACGA...CTACAAACAG:W1(V380_D-1)->G:W-1(V404_D-1)) -Found potential edge: Edge(380->405,w:4.0) between GGCCACACGA...CTACAAACAG:W1(V380_D-1) and A:W-1(V405_D-1) -removing vertex A:W-1(V405_D-1) was concatenated into GGCCACACGA...TACAAACAGA:W1(V380_D-1) -Want to move edge Edge(405->406,w:4.0)(A:W-1(V405_D-1)->C:W-1(V406_D-1)) to (GGCCACACGA...TACAAACAGA:W1(V380_D-1)->C:W-1(V406_D-1) - adding edge: GGCCACACGA...TACAAACAGA:W1(V380_D-1) to C:W-1(V406_D-1) -removing edge Edge(405->406,w:4.0)(A:W-1(V405_D-1)->C:W-1(V406_D-1)) -removing edge Edge(380->405,w:4.0)(GGCCACACGA...TACAAACAGA:W1(V380_D-1)->A:W-1(V405_D-1)) -Found potential edge: Edge(380->406,w:4.0) between GGCCACACGA...TACAAACAGA:W1(V380_D-1) and C:W-1(V406_D-1) -removing vertex C:W-1(V406_D-1) was concatenated into GGCCACACGA...ACAAACAGAC:W1(V380_D-1) -Want to move edge Edge(406->407,w:4.0)(C:W-1(V406_D-1)->T:W-1(V407_D-1)) to (GGCCACACGA...ACAAACAGAC:W1(V380_D-1)->T:W-1(V407_D-1) - adding edge: GGCCACACGA...ACAAACAGAC:W1(V380_D-1) to T:W-1(V407_D-1) -removing edge Edge(406->407,w:4.0)(C:W-1(V406_D-1)->T:W-1(V407_D-1)) -removing edge Edge(380->406,w:4.0)(GGCCACACGA...ACAAACAGAC:W1(V380_D-1)->C:W-1(V406_D-1)) -Found potential edge: Edge(380->407,w:4.0) between GGCCACACGA...ACAAACAGAC:W1(V380_D-1) and T:W-1(V407_D-1) -removing vertex T:W-1(V407_D-1) was concatenated into GGCCACACGA...CAAACAGACT:W1(V380_D-1) -Want to move edge Edge(407->408,w:4.0)(T:W-1(V407_D-1)->T:W-1(V408_D-1)) to (GGCCACACGA...CAAACAGACT:W1(V380_D-1)->T:W-1(V408_D-1) - adding edge: GGCCACACGA...CAAACAGACT:W1(V380_D-1) to T:W-1(V408_D-1) -removing edge Edge(407->408,w:4.0)(T:W-1(V407_D-1)->T:W-1(V408_D-1)) -removing edge Edge(380->407,w:4.0)(GGCCACACGA...CAAACAGACT:W1(V380_D-1)->T:W-1(V407_D-1)) -Found potential edge: Edge(380->408,w:4.0) between GGCCACACGA...CAAACAGACT:W1(V380_D-1) and T:W-1(V408_D-1) -removing vertex T:W-1(V408_D-1) was concatenated into GGCCACACGA...AAACAGACTT:W1(V380_D-1) -Want to move edge Edge(408->409,w:4.0)(T:W-1(V408_D-1)->C:W-1(V409_D-1)) to (GGCCACACGA...AAACAGACTT:W1(V380_D-1)->C:W-1(V409_D-1) - adding edge: GGCCACACGA...AAACAGACTT:W1(V380_D-1) to C:W-1(V409_D-1) -removing edge Edge(408->409,w:4.0)(T:W-1(V408_D-1)->C:W-1(V409_D-1)) -removing edge Edge(380->408,w:4.0)(GGCCACACGA...AAACAGACTT:W1(V380_D-1)->T:W-1(V408_D-1)) -Found potential edge: Edge(380->409,w:4.0) between GGCCACACGA...AAACAGACTT:W1(V380_D-1) and C:W-1(V409_D-1) -removing vertex C:W-1(V409_D-1) was concatenated into GGCCACACGA...AACAGACTTC:W1(V380_D-1) -Want to move edge Edge(409->410,w:4.0)(C:W-1(V409_D-1)->C:W-1(V410_D-1)) to (GGCCACACGA...AACAGACTTC:W1(V380_D-1)->C:W-1(V410_D-1) - adding edge: GGCCACACGA...AACAGACTTC:W1(V380_D-1) to C:W-1(V410_D-1) -removing edge Edge(409->410,w:4.0)(C:W-1(V409_D-1)->C:W-1(V410_D-1)) -removing edge Edge(380->409,w:4.0)(GGCCACACGA...AACAGACTTC:W1(V380_D-1)->C:W-1(V409_D-1)) -Found potential edge: Edge(380->410,w:4.0) between GGCCACACGA...AACAGACTTC:W1(V380_D-1) and C:W-1(V410_D-1) -removing vertex C:W-1(V410_D-1) was concatenated into GGCCACACGA...ACAGACTTCC:W1(V380_D-1) -Want to move edge Edge(410->411,w:4.0)(C:W-1(V410_D-1)->T:W-1(V411_D-1)) to (GGCCACACGA...ACAGACTTCC:W1(V380_D-1)->T:W-1(V411_D-1) - adding edge: GGCCACACGA...ACAGACTTCC:W1(V380_D-1) to T:W-1(V411_D-1) -removing edge Edge(410->411,w:4.0)(C:W-1(V410_D-1)->T:W-1(V411_D-1)) -removing edge Edge(380->410,w:4.0)(GGCCACACGA...ACAGACTTCC:W1(V380_D-1)->C:W-1(V410_D-1)) -Found potential edge: Edge(380->411,w:4.0) between GGCCACACGA...ACAGACTTCC:W1(V380_D-1) and T:W-1(V411_D-1) -removing vertex T:W-1(V411_D-1) was concatenated into GGCCACACGA...CAGACTTCCT:W1(V380_D-1) -Want to move edge Edge(411->412,w:6.0)(T:W-1(V411_D-1)->C:W-1(V412_D-1)) to (GGCCACACGA...CAGACTTCCT:W1(V380_D-1)->C:W-1(V412_D-1) - adding edge: GGCCACACGA...CAGACTTCCT:W1(V380_D-1) to C:W-1(V412_D-1) -removing edge Edge(411->412,w:6.0)(T:W-1(V411_D-1)->C:W-1(V412_D-1)) -removing edge Edge(380->411,w:4.0)(GGCCACACGA...CAGACTTCCT:W1(V380_D-1)->T:W-1(V411_D-1)) -Found potential edge: Edge(380->412,w:6.0) between GGCCACACGA...CAGACTTCCT:W1(V380_D-1) and C:W-1(V412_D-1) -removing vertex C:W-1(V412_D-1) was concatenated into GGCCACACGA...AGACTTCCTC:W2(V380_D-1) -Want to move edge Edge(412->413,w:6.0)(C:W-1(V412_D-1)->A:W-1(V413_D-1)) to (GGCCACACGA...AGACTTCCTC:W2(V380_D-1)->A:W-1(V413_D-1) - adding edge: GGCCACACGA...AGACTTCCTC:W2(V380_D-1) to A:W-1(V413_D-1) -removing edge Edge(412->413,w:6.0)(C:W-1(V412_D-1)->A:W-1(V413_D-1)) -removing edge Edge(380->412,w:6.0)(GGCCACACGA...AGACTTCCTC:W2(V380_D-1)->C:W-1(V412_D-1)) -Found potential edge: Edge(380->413,w:6.0) between GGCCACACGA...AGACTTCCTC:W2(V380_D-1) and A:W-1(V413_D-1) -removing vertex A:W-1(V413_D-1) was concatenated into GGCCACACGA...GACTTCCTCA:W2(V380_D-1) -Want to move edge Edge(413->414,w:8.0)(A:W-1(V413_D-1)->A:W-1(V414_D-1)) to (GGCCACACGA...GACTTCCTCA:W2(V380_D-1)->A:W-1(V414_D-1) - adding edge: GGCCACACGA...GACTTCCTCA:W2(V380_D-1) to A:W-1(V414_D-1) -removing edge Edge(413->414,w:8.0)(A:W-1(V413_D-1)->A:W-1(V414_D-1)) -removing edge Edge(380->413,w:6.0)(GGCCACACGA...GACTTCCTCA:W2(V380_D-1)->A:W-1(V413_D-1)) -Found potential edge: Edge(380->414,w:8.0) between GGCCACACGA...GACTTCCTCA:W2(V380_D-1) and A:W-1(V414_D-1) -removing vertex A:W-1(V414_D-1) was concatenated into GGCCACACGA...ACTTCCTCAA:W2(V380_D-1) -Want to move edge Edge(414->415,w:8.0)(A:W-1(V414_D-1)->G:W-1(V415_D-1)) to (GGCCACACGA...ACTTCCTCAA:W2(V380_D-1)->G:W-1(V415_D-1) - adding edge: GGCCACACGA...ACTTCCTCAA:W2(V380_D-1) to G:W-1(V415_D-1) -removing edge Edge(414->415,w:8.0)(A:W-1(V414_D-1)->G:W-1(V415_D-1)) -removing edge Edge(380->414,w:8.0)(GGCCACACGA...ACTTCCTCAA:W2(V380_D-1)->A:W-1(V414_D-1)) -Found potential edge: Edge(380->415,w:8.0) between GGCCACACGA...ACTTCCTCAA:W2(V380_D-1) and G:W-1(V415_D-1) -removing vertex G:W-1(V415_D-1) was concatenated into GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) -Want to move edge Edge(415->416,w:6.0)(G:W-1(V415_D-1)->C:W-1(V416_D-1)) to (GGCCACACGA...CTTCCTCAAG:W2(V380_D-1)->C:W-1(V416_D-1) - adding edge: GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) to C:W-1(V416_D-1) -Want to move edge Edge(415->885,w:2.0)(G:W-1(V415_D-1)->G:W-1(V885_D-1)) to (GGCCACACGA...CTTCCTCAAG:W2(V380_D-1)->G:W-1(V885_D-1) - adding edge: GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) to G:W-1(V885_D-1) -removing edge Edge(415->416,w:6.0)(G:W-1(V415_D-1)->C:W-1(V416_D-1)) -removing edge Edge(415->885,w:2.0)(G:W-1(V415_D-1)->G:W-1(V885_D-1)) -removing edge Edge(380->415,w:8.0)(GGCCACACGA...CTTCCTCAAG:W2(V380_D-1)->G:W-1(V415_D-1)) -Found potential edge: Edge(416->417,w:6.0) between C:W-1(V416_D-1) and C:W-1(V417_D-1) -removing vertex C:W-1(V417_D-1) was concatenated into CC:W6(V416_D-1) -Want to move edge Edge(417->418,w:6.0)(C:W-1(V417_D-1)->T:W-1(V418_D-1)) to (CC:W6(V416_D-1)->T:W-1(V418_D-1) - adding edge: CC:W6(V416_D-1) to T:W-1(V418_D-1) -removing edge Edge(417->418,w:6.0)(C:W-1(V417_D-1)->T:W-1(V418_D-1)) -removing edge Edge(416->417,w:6.0)(CC:W6(V416_D-1)->C:W-1(V417_D-1)) -Found potential edge: Edge(416->418,w:6.0) between CC:W6(V416_D-1) and T:W-1(V418_D-1) -removing vertex T:W-1(V418_D-1) was concatenated into CCT:W6(V416_D-1) -Want to move edge Edge(418->419,w:6.0)(T:W-1(V418_D-1)->C:W-1(V419_D-1)) to (CCT:W6(V416_D-1)->C:W-1(V419_D-1) - adding edge: CCT:W6(V416_D-1) to C:W-1(V419_D-1) -removing edge Edge(418->419,w:6.0)(T:W-1(V418_D-1)->C:W-1(V419_D-1)) -removing edge Edge(416->418,w:6.0)(CCT:W6(V416_D-1)->T:W-1(V418_D-1)) -Found potential edge: Edge(416->419,w:6.0) between CCT:W6(V416_D-1) and C:W-1(V419_D-1) -removing vertex C:W-1(V419_D-1) was concatenated into CCTC:W6(V416_D-1) -Want to move edge Edge(419->420,w:6.0)(C:W-1(V419_D-1)->A:W-1(V420_D-1)) to (CCTC:W6(V416_D-1)->A:W-1(V420_D-1) - adding edge: CCTC:W6(V416_D-1) to A:W-1(V420_D-1) -removing edge Edge(419->420,w:6.0)(C:W-1(V419_D-1)->A:W-1(V420_D-1)) -removing edge Edge(416->419,w:6.0)(CCTC:W6(V416_D-1)->C:W-1(V419_D-1)) -Found potential edge: Edge(416->420,w:6.0) between CCTC:W6(V416_D-1) and A:W-1(V420_D-1) -removing vertex A:W-1(V420_D-1) was concatenated into CCTCA:W6(V416_D-1) -Want to move edge Edge(420->421,w:6.0)(A:W-1(V420_D-1)->T:W-1(V421_D-1)) to (CCTCA:W6(V416_D-1)->T:W-1(V421_D-1) - adding edge: CCTCA:W6(V416_D-1) to T:W-1(V421_D-1) -removing edge Edge(420->421,w:6.0)(A:W-1(V420_D-1)->T:W-1(V421_D-1)) -removing edge Edge(416->420,w:6.0)(CCTCA:W6(V416_D-1)->A:W-1(V420_D-1)) -Found potential edge: Edge(416->421,w:6.0) between CCTCA:W6(V416_D-1) and T:W-1(V421_D-1) -removing vertex T:W-1(V421_D-1) was concatenated into CCTCAT:W6(V416_D-1) -Want to move edge Edge(421->422,w:6.0)(T:W-1(V421_D-1)->C:W-1(V422_D-1)) to (CCTCAT:W6(V416_D-1)->C:W-1(V422_D-1) - adding edge: CCTCAT:W6(V416_D-1) to C:W-1(V422_D-1) -removing edge Edge(421->422,w:6.0)(T:W-1(V421_D-1)->C:W-1(V422_D-1)) -removing edge Edge(416->421,w:6.0)(CCTCAT:W6(V416_D-1)->T:W-1(V421_D-1)) -Found potential edge: Edge(416->422,w:6.0) between CCTCAT:W6(V416_D-1) and C:W-1(V422_D-1) -removing vertex C:W-1(V422_D-1) was concatenated into CCTCATC:W6(V416_D-1) -Want to move edge Edge(422->423,w:8.0)(C:W-1(V422_D-1)->A:W-1(V423_D-1)) to (CCTCATC:W6(V416_D-1)->A:W-1(V423_D-1) - adding edge: CCTCATC:W6(V416_D-1) to A:W-1(V423_D-1) -removing edge Edge(422->423,w:8.0)(C:W-1(V422_D-1)->A:W-1(V423_D-1)) -removing edge Edge(416->422,w:6.0)(CCTCATC:W6(V416_D-1)->C:W-1(V422_D-1)) -Found potential edge: Edge(416->423,w:8.0) between CCTCATC:W6(V416_D-1) and A:W-1(V423_D-1) -removing vertex A:W-1(V423_D-1) was concatenated into CCTCATCA:W6(V416_D-1) -Want to move edge Edge(423->424,w:8.0)(A:W-1(V423_D-1)->G:W-1(V424_D-1)) to (CCTCATCA:W6(V416_D-1)->G:W-1(V424_D-1) - adding edge: CCTCATCA:W6(V416_D-1) to G:W-1(V424_D-1) -removing edge Edge(423->424,w:8.0)(A:W-1(V423_D-1)->G:W-1(V424_D-1)) -removing edge Edge(416->423,w:8.0)(CCTCATCA:W6(V416_D-1)->A:W-1(V423_D-1)) -Found potential edge: Edge(416->424,w:8.0) between CCTCATCA:W6(V416_D-1) and G:W-1(V424_D-1) -removing vertex G:W-1(V424_D-1) was concatenated into CCTCATCAG:W7(V416_D-1) -Want to move edge Edge(424->425,w:8.0)(G:W-1(V424_D-1)->C:W-1(V425_D-1)) to (CCTCATCAG:W7(V416_D-1)->C:W-1(V425_D-1) - adding edge: CCTCATCAG:W7(V416_D-1) to C:W-1(V425_D-1) -removing edge Edge(424->425,w:8.0)(G:W-1(V424_D-1)->C:W-1(V425_D-1)) -removing edge Edge(416->424,w:8.0)(CCTCATCAG:W7(V416_D-1)->G:W-1(V424_D-1)) -Found potential edge: Edge(416->425,w:8.0) between CCTCATCAG:W7(V416_D-1) and C:W-1(V425_D-1) -removing vertex C:W-1(V425_D-1) was concatenated into CCTCATCAGC:W7(V416_D-1) -Want to move edge Edge(425->426,w:8.0)(C:W-1(V425_D-1)->A:W-1(V426_D-1)) to (CCTCATCAGC:W7(V416_D-1)->A:W-1(V426_D-1) - adding edge: CCTCATCAGC:W7(V416_D-1) to A:W-1(V426_D-1) -removing edge Edge(425->426,w:8.0)(C:W-1(V425_D-1)->A:W-1(V426_D-1)) -removing edge Edge(416->425,w:8.0)(CCTCATCAGC:W7(V416_D-1)->C:W-1(V425_D-1)) -Found potential edge: Edge(416->426,w:8.0) between CCTCATCAGC:W7(V416_D-1) and A:W-1(V426_D-1) -removing vertex A:W-1(V426_D-1) was concatenated into CCTCATCAGCA:W7(V416_D-1) -Want to move edge Edge(426->427,w:8.0)(A:W-1(V426_D-1)->A:W-1(V427_D-1)) to (CCTCATCAGCA:W7(V416_D-1)->A:W-1(V427_D-1) - adding edge: CCTCATCAGCA:W7(V416_D-1) to A:W-1(V427_D-1) -removing edge Edge(426->427,w:8.0)(A:W-1(V426_D-1)->A:W-1(V427_D-1)) -removing edge Edge(416->426,w:8.0)(CCTCATCAGCA:W7(V416_D-1)->A:W-1(V426_D-1)) -Found potential edge: Edge(416->427,w:8.0) between CCTCATCAGCA:W7(V416_D-1) and A:W-1(V427_D-1) -removing vertex A:W-1(V427_D-1) was concatenated into CCTCATCAGCAA:W7(V416_D-1) -Want to move edge Edge(427->428,w:8.0)(A:W-1(V427_D-1)->G:W-1(V428_D-1)) to (CCTCATCAGCAA:W7(V416_D-1)->G:W-1(V428_D-1) - adding edge: CCTCATCAGCAA:W7(V416_D-1) to G:W-1(V428_D-1) -removing edge Edge(427->428,w:8.0)(A:W-1(V427_D-1)->G:W-1(V428_D-1)) -removing edge Edge(416->427,w:8.0)(CCTCATCAGCAA:W7(V416_D-1)->A:W-1(V427_D-1)) -Found potential edge: Edge(416->428,w:8.0) between CCTCATCAGCAA:W7(V416_D-1) and G:W-1(V428_D-1) -removing vertex G:W-1(V428_D-1) was concatenated into CCTCATCAGCAAG:W7(V416_D-1) -Want to move edge Edge(428->429,w:8.0)(G:W-1(V428_D-1)->A:W-1(V429_D-1)) to (CCTCATCAGCAAG:W7(V416_D-1)->A:W-1(V429_D-1) - adding edge: CCTCATCAGCAAG:W7(V416_D-1) to A:W-1(V429_D-1) -removing edge Edge(428->429,w:8.0)(G:W-1(V428_D-1)->A:W-1(V429_D-1)) -removing edge Edge(416->428,w:8.0)(CCTCATCAGCAAG:W7(V416_D-1)->G:W-1(V428_D-1)) -Found potential edge: Edge(416->429,w:8.0) between CCTCATCAGCAAG:W7(V416_D-1) and A:W-1(V429_D-1) -removing vertex A:W-1(V429_D-1) was concatenated into CCTCATCAGCAAGA:W7(V416_D-1) -Want to move edge Edge(429->430,w:8.0)(A:W-1(V429_D-1)->A:W-1(V430_D-1)) to (CCTCATCAGCAAGA:W7(V416_D-1)->A:W-1(V430_D-1) - adding edge: CCTCATCAGCAAGA:W7(V416_D-1) to A:W-1(V430_D-1) -removing edge Edge(429->430,w:8.0)(A:W-1(V429_D-1)->A:W-1(V430_D-1)) -removing edge Edge(416->429,w:8.0)(CCTCATCAGCAAGA:W7(V416_D-1)->A:W-1(V429_D-1)) -Found potential edge: Edge(416->430,w:8.0) between CCTCATCAGCAAGA:W7(V416_D-1) and A:W-1(V430_D-1) -removing vertex A:W-1(V430_D-1) was concatenated into CCTCATCAGCAAGAA:W7(V416_D-1) -Want to move edge Edge(430->431,w:8.0)(A:W-1(V430_D-1)->G:W-1(V431_D-1)) to (CCTCATCAGCAAGAA:W7(V416_D-1)->G:W-1(V431_D-1) - adding edge: CCTCATCAGCAAGAA:W7(V416_D-1) to G:W-1(V431_D-1) -removing edge Edge(430->431,w:8.0)(A:W-1(V430_D-1)->G:W-1(V431_D-1)) -removing edge Edge(416->430,w:8.0)(CCTCATCAGCAAGAA:W7(V416_D-1)->A:W-1(V430_D-1)) -Found potential edge: Edge(416->431,w:8.0) between CCTCATCAGCAAGAA:W7(V416_D-1) and G:W-1(V431_D-1) -removing vertex G:W-1(V431_D-1) was concatenated into CCTCATCAGCAAGAAG:W7(V416_D-1) -Want to move edge Edge(431->432,w:8.0)(G:W-1(V431_D-1)->A:W-1(V432_D-1)) to (CCTCATCAGCAAGAAG:W7(V416_D-1)->A:W-1(V432_D-1) - adding edge: CCTCATCAGCAAGAAG:W7(V416_D-1) to A:W-1(V432_D-1) -removing edge Edge(431->432,w:8.0)(G:W-1(V431_D-1)->A:W-1(V432_D-1)) -removing edge Edge(416->431,w:8.0)(CCTCATCAGCAAGAAG:W7(V416_D-1)->G:W-1(V431_D-1)) -Found potential edge: Edge(416->432,w:8.0) between CCTCATCAGCAAGAAG:W7(V416_D-1) and A:W-1(V432_D-1) -removing vertex A:W-1(V432_D-1) was concatenated into CCTCATCAGCAAGAAGA:W7(V416_D-1) -Want to move edge Edge(432->433,w:6.0)(A:W-1(V432_D-1)->A:W-1(V433_D-1)) to (CCTCATCAGCAAGAAGA:W7(V416_D-1)->A:W-1(V433_D-1) - adding edge: CCTCATCAGCAAGAAGA:W7(V416_D-1) to A:W-1(V433_D-1) -removing edge Edge(432->433,w:6.0)(A:W-1(V432_D-1)->A:W-1(V433_D-1)) -removing edge Edge(416->432,w:8.0)(CCTCATCAGCAAGAAGA:W7(V416_D-1)->A:W-1(V432_D-1)) -Found potential edge: Edge(416->433,w:6.0) between CCTCATCAGCAAGAAGA:W7(V416_D-1) and A:W-1(V433_D-1) -removing vertex A:W-1(V433_D-1) was concatenated into CCTCATCAGCAAGAAGAA:W7(V416_D-1) -Want to move edge Edge(433->434,w:6.0)(A:W-1(V433_D-1)->A:W-1(V434_D-1)) to (CCTCATCAGCAAGAAGAA:W7(V416_D-1)->A:W-1(V434_D-1) - adding edge: CCTCATCAGCAAGAAGAA:W7(V416_D-1) to A:W-1(V434_D-1) -removing edge Edge(433->434,w:6.0)(A:W-1(V433_D-1)->A:W-1(V434_D-1)) -removing edge Edge(416->433,w:6.0)(CCTCATCAGCAAGAAGAA:W7(V416_D-1)->A:W-1(V433_D-1)) -Found potential edge: Edge(416->434,w:6.0) between CCTCATCAGCAAGAAGAA:W7(V416_D-1) and A:W-1(V434_D-1) -removing vertex A:W-1(V434_D-1) was concatenated into CCTCATCAGCAAGAAGAAA:W7(V416_D-1) -Want to move edge Edge(434->435,w:6.0)(A:W-1(V434_D-1)->T:W-1(V435_D-1)) to (CCTCATCAGCAAGAAGAAA:W7(V416_D-1)->T:W-1(V435_D-1) - adding edge: CCTCATCAGCAAGAAGAAA:W7(V416_D-1) to T:W-1(V435_D-1) -removing edge Edge(434->435,w:6.0)(A:W-1(V434_D-1)->T:W-1(V435_D-1)) -removing edge Edge(416->434,w:6.0)(CCTCATCAGCAAGAAGAAA:W7(V416_D-1)->A:W-1(V434_D-1)) -Found potential edge: Edge(416->435,w:6.0) between CCTCATCAGCAAGAAGAAA:W7(V416_D-1) and T:W-1(V435_D-1) -removing vertex T:W-1(V435_D-1) was concatenated into CCTCATCAGCAAGAAGAAAT:W7(V416_D-1) -Want to move edge Edge(435->436,w:6.0)(T:W-1(V435_D-1)->C:W-1(V436_D-1)) to (CCTCATCAGCAAGAAGAAAT:W7(V416_D-1)->C:W-1(V436_D-1) - adding edge: CCTCATCAGCAAGAAGAAAT:W7(V416_D-1) to C:W-1(V436_D-1) -removing edge Edge(435->436,w:6.0)(T:W-1(V435_D-1)->C:W-1(V436_D-1)) -removing edge Edge(416->435,w:6.0)(CCTCATCAGCAAGAAGAAAT:W7(V416_D-1)->T:W-1(V435_D-1)) -Found potential edge: Edge(416->436,w:6.0) between CCTCATCAGCAAGAAGAAAT:W7(V416_D-1) and C:W-1(V436_D-1) -removing vertex C:W-1(V436_D-1) was concatenated into CCTCATCAGCAAGAAGAAATC:W7(V416_D-1) -Want to move edge Edge(436->437,w:6.0)(C:W-1(V436_D-1)->T:W-1(V437_D-1)) to (CCTCATCAGCAAGAAGAAATC:W7(V416_D-1)->T:W-1(V437_D-1) - adding edge: CCTCATCAGCAAGAAGAAATC:W7(V416_D-1) to T:W-1(V437_D-1) -removing edge Edge(436->437,w:6.0)(C:W-1(V436_D-1)->T:W-1(V437_D-1)) -removing edge Edge(416->436,w:6.0)(CCTCATCAGCAAGAAGAAATC:W7(V416_D-1)->C:W-1(V436_D-1)) -Found potential edge: Edge(416->437,w:6.0) between CCTCATCAGCAAGAAGAAATC:W7(V416_D-1) and T:W-1(V437_D-1) -removing vertex T:W-1(V437_D-1) was concatenated into CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1) -Want to move edge Edge(437->438,w:6.0)(T:W-1(V437_D-1)->T:W-1(V438_D-1)) to (CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1)->T:W-1(V438_D-1) - adding edge: CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1) to T:W-1(V438_D-1) -removing edge Edge(437->438,w:6.0)(T:W-1(V437_D-1)->T:W-1(V438_D-1)) -removing edge Edge(416->437,w:6.0)(CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1)->T:W-1(V437_D-1)) -Found potential edge: Edge(416->438,w:6.0) between CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1) and T:W-1(V438_D-1) -removing vertex T:W-1(V438_D-1) was concatenated into CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1) -Want to move edge Edge(438->439,w:6.0)(T:W-1(V438_D-1)->T:W-1(V439_D-1)) to (CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1)->T:W-1(V439_D-1) - adding edge: CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1) to T:W-1(V439_D-1) -removing edge Edge(438->439,w:6.0)(T:W-1(V438_D-1)->T:W-1(V439_D-1)) -removing edge Edge(416->438,w:6.0)(CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1)->T:W-1(V438_D-1)) -Found potential edge: Edge(416->439,w:6.0) between CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1) and T:W-1(V439_D-1) -removing vertex T:W-1(V439_D-1) was concatenated into CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) -Want to move edge Edge(439->440,w:6.0)(T:W-1(V439_D-1)->C:W-1(V440_D-1)) to (CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1)->C:W-1(V440_D-1) - adding edge: CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) to C:W-1(V440_D-1) -removing edge Edge(439->440,w:6.0)(T:W-1(V439_D-1)->C:W-1(V440_D-1)) -removing edge Edge(416->439,w:6.0)(CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1)->T:W-1(V439_D-1)) -Found potential edge: Edge(440->441,w:8.0) between C:W-1(V440_D-1) and T:W-1(V441_D-1) -removing vertex T:W-1(V441_D-1) was concatenated into CT:W8(V440_D-1) -Want to move edge Edge(441->442,w:8.0)(T:W-1(V441_D-1)->T:W-1(V442_D-1)) to (CT:W8(V440_D-1)->T:W-1(V442_D-1) - adding edge: CT:W8(V440_D-1) to T:W-1(V442_D-1) -removing edge Edge(441->442,w:8.0)(T:W-1(V441_D-1)->T:W-1(V442_D-1)) -removing edge Edge(440->441,w:8.0)(CT:W8(V440_D-1)->T:W-1(V441_D-1)) -Found potential edge: Edge(440->442,w:8.0) between CT:W8(V440_D-1) and T:W-1(V442_D-1) -removing vertex T:W-1(V442_D-1) was concatenated into CTT:W8(V440_D-1) -Want to move edge Edge(442->443,w:8.0)(T:W-1(V442_D-1)->T:W-1(V443_D-1)) to (CTT:W8(V440_D-1)->T:W-1(V443_D-1) - adding edge: CTT:W8(V440_D-1) to T:W-1(V443_D-1) -removing edge Edge(442->443,w:8.0)(T:W-1(V442_D-1)->T:W-1(V443_D-1)) -removing edge Edge(440->442,w:8.0)(CTT:W8(V440_D-1)->T:W-1(V442_D-1)) -Found potential edge: Edge(440->443,w:8.0) between CTT:W8(V440_D-1) and T:W-1(V443_D-1) -removing vertex T:W-1(V443_D-1) was concatenated into CTTT:W8(V440_D-1) -Want to move edge Edge(443->444,w:8.0)(T:W-1(V443_D-1)->C:W-1(V444_D-1)) to (CTTT:W8(V440_D-1)->C:W-1(V444_D-1) - adding edge: CTTT:W8(V440_D-1) to C:W-1(V444_D-1) -removing edge Edge(443->444,w:8.0)(T:W-1(V443_D-1)->C:W-1(V444_D-1)) -removing edge Edge(440->443,w:8.0)(CTTT:W8(V440_D-1)->T:W-1(V443_D-1)) -Found potential edge: Edge(440->444,w:8.0) between CTTT:W8(V440_D-1) and C:W-1(V444_D-1) -removing vertex C:W-1(V444_D-1) was concatenated into CTTTC:W8(V440_D-1) -Want to move edge Edge(444->445,w:8.0)(C:W-1(V444_D-1)->C:W-1(V445_D-1)) to (CTTTC:W8(V440_D-1)->C:W-1(V445_D-1) - adding edge: CTTTC:W8(V440_D-1) to C:W-1(V445_D-1) -removing edge Edge(444->445,w:8.0)(C:W-1(V444_D-1)->C:W-1(V445_D-1)) -removing edge Edge(440->444,w:8.0)(CTTTC:W8(V440_D-1)->C:W-1(V444_D-1)) -Found potential edge: Edge(440->445,w:8.0) between CTTTC:W8(V440_D-1) and C:W-1(V445_D-1) -removing vertex C:W-1(V445_D-1) was concatenated into CTTTCC:W8(V440_D-1) -Want to move edge Edge(445->446,w:8.0)(C:W-1(V445_D-1)->A:W-1(V446_D-1)) to (CTTTCC:W8(V440_D-1)->A:W-1(V446_D-1) - adding edge: CTTTCC:W8(V440_D-1) to A:W-1(V446_D-1) -removing edge Edge(445->446,w:8.0)(C:W-1(V445_D-1)->A:W-1(V446_D-1)) -removing edge Edge(440->445,w:8.0)(CTTTCC:W8(V440_D-1)->C:W-1(V445_D-1)) -Found potential edge: Edge(440->446,w:8.0) between CTTTCC:W8(V440_D-1) and A:W-1(V446_D-1) -removing vertex A:W-1(V446_D-1) was concatenated into CTTTCCA:W8(V440_D-1) -Want to move edge Edge(446->447,w:8.0)(A:W-1(V446_D-1)->A:W-1(V447_D-1)) to (CTTTCCA:W8(V440_D-1)->A:W-1(V447_D-1) - adding edge: CTTTCCA:W8(V440_D-1) to A:W-1(V447_D-1) -removing edge Edge(446->447,w:8.0)(A:W-1(V446_D-1)->A:W-1(V447_D-1)) -removing edge Edge(440->446,w:8.0)(CTTTCCA:W8(V440_D-1)->A:W-1(V446_D-1)) -Found potential edge: Edge(440->447,w:8.0) between CTTTCCA:W8(V440_D-1) and A:W-1(V447_D-1) -removing vertex A:W-1(V447_D-1) was concatenated into CTTTCCAA:W8(V440_D-1) -Want to move edge Edge(447->448,w:8.0)(A:W-1(V447_D-1)->G:W-1(V448_D-1)) to (CTTTCCAA:W8(V440_D-1)->G:W-1(V448_D-1) - adding edge: CTTTCCAA:W8(V440_D-1) to G:W-1(V448_D-1) -removing edge Edge(447->448,w:8.0)(A:W-1(V447_D-1)->G:W-1(V448_D-1)) -removing edge Edge(440->447,w:8.0)(CTTTCCAA:W8(V440_D-1)->A:W-1(V447_D-1)) -Found potential edge: Edge(440->448,w:8.0) between CTTTCCAA:W8(V440_D-1) and G:W-1(V448_D-1) -removing vertex G:W-1(V448_D-1) was concatenated into CTTTCCAAG:W8(V440_D-1) -Want to move edge Edge(448->449,w:8.0)(G:W-1(V448_D-1)->T:W-1(V449_D-1)) to (CTTTCCAAG:W8(V440_D-1)->T:W-1(V449_D-1) - adding edge: CTTTCCAAG:W8(V440_D-1) to T:W-1(V449_D-1) -removing edge Edge(448->449,w:8.0)(G:W-1(V448_D-1)->T:W-1(V449_D-1)) -removing edge Edge(440->448,w:8.0)(CTTTCCAAG:W8(V440_D-1)->G:W-1(V448_D-1)) -Found potential edge: Edge(440->449,w:8.0) between CTTTCCAAG:W8(V440_D-1) and T:W-1(V449_D-1) -removing vertex T:W-1(V449_D-1) was concatenated into CTTTCCAAGT:W8(V440_D-1) -Want to move edge Edge(449->450,w:8.0)(T:W-1(V449_D-1)->A:W-1(V450_D-1)) to (CTTTCCAAGT:W8(V440_D-1)->A:W-1(V450_D-1) - adding edge: CTTTCCAAGT:W8(V440_D-1) to A:W-1(V450_D-1) -removing edge Edge(449->450,w:8.0)(T:W-1(V449_D-1)->A:W-1(V450_D-1)) -removing edge Edge(440->449,w:8.0)(CTTTCCAAGT:W8(V440_D-1)->T:W-1(V449_D-1)) -Found potential edge: Edge(440->450,w:8.0) between CTTTCCAAGT:W8(V440_D-1) and A:W-1(V450_D-1) -removing vertex A:W-1(V450_D-1) was concatenated into CTTTCCAAGTA:W8(V440_D-1) -Want to move edge Edge(450->451,w:8.0)(A:W-1(V450_D-1)->G:W-1(V451_D-1)) to (CTTTCCAAGTA:W8(V440_D-1)->G:W-1(V451_D-1) - adding edge: CTTTCCAAGTA:W8(V440_D-1) to G:W-1(V451_D-1) -removing edge Edge(450->451,w:8.0)(A:W-1(V450_D-1)->G:W-1(V451_D-1)) -removing edge Edge(440->450,w:8.0)(CTTTCCAAGTA:W8(V440_D-1)->A:W-1(V450_D-1)) -Found potential edge: Edge(451->452,w:10.0) between G:W-1(V451_D-1) and T:W-1(V452_D-1) -removing vertex T:W-1(V452_D-1) was concatenated into GT:W10(V451_D-1) -Want to move edge Edge(452->453,w:10.0)(T:W-1(V452_D-1)->G:W-1(V453_D-1)) to (GT:W10(V451_D-1)->G:W-1(V453_D-1) - adding edge: GT:W10(V451_D-1) to G:W-1(V453_D-1) -removing edge Edge(452->453,w:10.0)(T:W-1(V452_D-1)->G:W-1(V453_D-1)) -removing edge Edge(451->452,w:10.0)(GT:W10(V451_D-1)->T:W-1(V452_D-1)) -Found potential edge: Edge(451->453,w:10.0) between GT:W10(V451_D-1) and G:W-1(V453_D-1) -removing vertex G:W-1(V453_D-1) was concatenated into GTG:W10(V451_D-1) -Want to move edge Edge(453->454,w:8.0)(G:W-1(V453_D-1)->T:W-1(V454_D-1)) to (GTG:W10(V451_D-1)->T:W-1(V454_D-1) - adding edge: GTG:W10(V451_D-1) to T:W-1(V454_D-1) -removing edge Edge(453->454,w:8.0)(G:W-1(V453_D-1)->T:W-1(V454_D-1)) -removing edge Edge(451->453,w:10.0)(GTG:W10(V451_D-1)->G:W-1(V453_D-1)) -Found potential edge: Edge(451->454,w:8.0) between GTG:W10(V451_D-1) and T:W-1(V454_D-1) -removing vertex T:W-1(V454_D-1) was concatenated into GTGT:W9(V451_D-1) -Want to move edge Edge(454->455,w:8.0)(T:W-1(V454_D-1)->C:W-1(V455_D-1)) to (GTGT:W9(V451_D-1)->C:W-1(V455_D-1) - adding edge: GTGT:W9(V451_D-1) to C:W-1(V455_D-1) -removing edge Edge(454->455,w:8.0)(T:W-1(V454_D-1)->C:W-1(V455_D-1)) -removing edge Edge(451->454,w:8.0)(GTGT:W9(V451_D-1)->T:W-1(V454_D-1)) -Found potential edge: Edge(451->455,w:8.0) between GTGT:W9(V451_D-1) and C:W-1(V455_D-1) -removing vertex C:W-1(V455_D-1) was concatenated into GTGTC:W9(V451_D-1) -Want to move edge Edge(455->456,w:8.0)(C:W-1(V455_D-1)->T:W-1(V456_D-1)) to (GTGTC:W9(V451_D-1)->T:W-1(V456_D-1) - adding edge: GTGTC:W9(V451_D-1) to T:W-1(V456_D-1) -removing edge Edge(455->456,w:8.0)(C:W-1(V455_D-1)->T:W-1(V456_D-1)) -removing edge Edge(451->455,w:8.0)(GTGTC:W9(V451_D-1)->C:W-1(V455_D-1)) -Found potential edge: Edge(451->456,w:8.0) between GTGTC:W9(V451_D-1) and T:W-1(V456_D-1) -removing vertex T:W-1(V456_D-1) was concatenated into GTGTCT:W9(V451_D-1) -Want to move edge Edge(456->457,w:8.0)(T:W-1(V456_D-1)->T:W-1(V457_D-1)) to (GTGTCT:W9(V451_D-1)->T:W-1(V457_D-1) - adding edge: GTGTCT:W9(V451_D-1) to T:W-1(V457_D-1) -removing edge Edge(456->457,w:8.0)(T:W-1(V456_D-1)->T:W-1(V457_D-1)) -removing edge Edge(451->456,w:8.0)(GTGTCT:W9(V451_D-1)->T:W-1(V456_D-1)) -Found potential edge: Edge(451->457,w:8.0) between GTGTCT:W9(V451_D-1) and T:W-1(V457_D-1) -removing vertex T:W-1(V457_D-1) was concatenated into GTGTCTT:W9(V451_D-1) -Want to move edge Edge(457->458,w:8.0)(T:W-1(V457_D-1)->A:W-1(V458_D-1)) to (GTGTCTT:W9(V451_D-1)->A:W-1(V458_D-1) - adding edge: GTGTCTT:W9(V451_D-1) to A:W-1(V458_D-1) -removing edge Edge(457->458,w:8.0)(T:W-1(V457_D-1)->A:W-1(V458_D-1)) -removing edge Edge(451->457,w:8.0)(GTGTCTT:W9(V451_D-1)->T:W-1(V457_D-1)) -Found potential edge: Edge(451->458,w:8.0) between GTGTCTT:W9(V451_D-1) and A:W-1(V458_D-1) -removing vertex A:W-1(V458_D-1) was concatenated into GTGTCTTA:W9(V451_D-1) -Want to move edge Edge(458->459,w:8.0)(A:W-1(V458_D-1)->A:W-1(V459_D-1)) to (GTGTCTTA:W9(V451_D-1)->A:W-1(V459_D-1) - adding edge: GTGTCTTA:W9(V451_D-1) to A:W-1(V459_D-1) -removing edge Edge(458->459,w:8.0)(A:W-1(V458_D-1)->A:W-1(V459_D-1)) -removing edge Edge(451->458,w:8.0)(GTGTCTTA:W9(V451_D-1)->A:W-1(V458_D-1)) -Found potential edge: Edge(451->459,w:8.0) between GTGTCTTA:W9(V451_D-1) and A:W-1(V459_D-1) -removing vertex A:W-1(V459_D-1) was concatenated into GTGTCTTAA:W9(V451_D-1) -Want to move edge Edge(459->460,w:8.0)(A:W-1(V459_D-1)->C:W-1(V460_D-1)) to (GTGTCTTAA:W9(V451_D-1)->C:W-1(V460_D-1) - adding edge: GTGTCTTAA:W9(V451_D-1) to C:W-1(V460_D-1) -removing edge Edge(459->460,w:8.0)(A:W-1(V459_D-1)->C:W-1(V460_D-1)) -removing edge Edge(451->459,w:8.0)(GTGTCTTAA:W9(V451_D-1)->A:W-1(V459_D-1)) -Found potential edge: Edge(451->460,w:8.0) between GTGTCTTAA:W9(V451_D-1) and C:W-1(V460_D-1) -removing vertex C:W-1(V460_D-1) was concatenated into GTGTCTTAAC:W8(V451_D-1) -Want to move edge Edge(460->461,w:8.0)(C:W-1(V460_D-1)->T:W-1(V461_D-1)) to (GTGTCTTAAC:W8(V451_D-1)->T:W-1(V461_D-1) - adding edge: GTGTCTTAAC:W8(V451_D-1) to T:W-1(V461_D-1) -removing edge Edge(460->461,w:8.0)(C:W-1(V460_D-1)->T:W-1(V461_D-1)) -removing edge Edge(451->460,w:8.0)(GTGTCTTAAC:W8(V451_D-1)->C:W-1(V460_D-1)) -Found potential edge: Edge(451->461,w:8.0) between GTGTCTTAAC:W8(V451_D-1) and T:W-1(V461_D-1) -removing vertex T:W-1(V461_D-1) was concatenated into GTGTCTTAACT:W8(V451_D-1) -Want to move edge Edge(461->462,w:8.0)(T:W-1(V461_D-1)->C:W-1(V462_D-1)) to (GTGTCTTAACT:W8(V451_D-1)->C:W-1(V462_D-1) - adding edge: GTGTCTTAACT:W8(V451_D-1) to C:W-1(V462_D-1) -removing edge Edge(461->462,w:8.0)(T:W-1(V461_D-1)->C:W-1(V462_D-1)) -removing edge Edge(451->461,w:8.0)(GTGTCTTAACT:W8(V451_D-1)->T:W-1(V461_D-1)) -Found potential edge: Edge(451->462,w:8.0) between GTGTCTTAACT:W8(V451_D-1) and C:W-1(V462_D-1) -removing vertex C:W-1(V462_D-1) was concatenated into GTGTCTTAACTC:W8(V451_D-1) -Want to move edge Edge(462->463,w:8.0)(C:W-1(V462_D-1)->A:W-1(V463_D-1)) to (GTGTCTTAACTC:W8(V451_D-1)->A:W-1(V463_D-1) - adding edge: GTGTCTTAACTC:W8(V451_D-1) to A:W-1(V463_D-1) -removing edge Edge(462->463,w:8.0)(C:W-1(V462_D-1)->A:W-1(V463_D-1)) -removing edge Edge(451->462,w:8.0)(GTGTCTTAACTC:W8(V451_D-1)->C:W-1(V462_D-1)) -Found potential edge: Edge(451->463,w:8.0) between GTGTCTTAACTC:W8(V451_D-1) and A:W-1(V463_D-1) -removing vertex A:W-1(V463_D-1) was concatenated into GTGTCTTAACTCA:W8(V451_D-1) -Want to move edge Edge(463->464,w:6.0)(A:W-1(V463_D-1)->G:W-1(V464_D-1)) to (GTGTCTTAACTCA:W8(V451_D-1)->G:W-1(V464_D-1) - adding edge: GTGTCTTAACTCA:W8(V451_D-1) to G:W-1(V464_D-1) -removing edge Edge(463->464,w:6.0)(A:W-1(V463_D-1)->G:W-1(V464_D-1)) -removing edge Edge(451->463,w:8.0)(GTGTCTTAACTCA:W8(V451_D-1)->A:W-1(V463_D-1)) -Found potential edge: Edge(451->464,w:6.0) between GTGTCTTAACTCA:W8(V451_D-1) and G:W-1(V464_D-1) -removing vertex G:W-1(V464_D-1) was concatenated into GTGTCTTAACTCAG:W8(V451_D-1) -Want to move edge Edge(464->465,w:6.0)(G:W-1(V464_D-1)->G:W-1(V465_D-1)) to (GTGTCTTAACTCAG:W8(V451_D-1)->G:W-1(V465_D-1) - adding edge: GTGTCTTAACTCAG:W8(V451_D-1) to G:W-1(V465_D-1) -removing edge Edge(464->465,w:6.0)(G:W-1(V464_D-1)->G:W-1(V465_D-1)) -removing edge Edge(451->464,w:6.0)(GTGTCTTAACTCAG:W8(V451_D-1)->G:W-1(V464_D-1)) -Found potential edge: Edge(451->465,w:6.0) between GTGTCTTAACTCAG:W8(V451_D-1) and G:W-1(V465_D-1) -removing vertex G:W-1(V465_D-1) was concatenated into GTGTCTTAACTCAGG:W8(V451_D-1) -Want to move edge Edge(465->466,w:4.0)(G:W-1(V465_D-1)->A:W-1(V466_D-1)) to (GTGTCTTAACTCAGG:W8(V451_D-1)->A:W-1(V466_D-1) - adding edge: GTGTCTTAACTCAGG:W8(V451_D-1) to A:W-1(V466_D-1) -removing edge Edge(465->466,w:4.0)(G:W-1(V465_D-1)->A:W-1(V466_D-1)) -removing edge Edge(451->465,w:6.0)(GTGTCTTAACTCAGG:W8(V451_D-1)->G:W-1(V465_D-1)) -Found potential edge: Edge(451->466,w:4.0) between GTGTCTTAACTCAGG:W8(V451_D-1) and A:W-1(V466_D-1) -removing vertex A:W-1(V466_D-1) was concatenated into GTGTCTTAACTCAGGA:W8(V451_D-1) -Want to move edge Edge(466->467,w:4.0)(A:W-1(V466_D-1)->G:W-1(V467_D-1)) to (GTGTCTTAACTCAGGA:W8(V451_D-1)->G:W-1(V467_D-1) - adding edge: GTGTCTTAACTCAGGA:W8(V451_D-1) to G:W-1(V467_D-1) -removing edge Edge(466->467,w:4.0)(A:W-1(V466_D-1)->G:W-1(V467_D-1)) -removing edge Edge(451->466,w:4.0)(GTGTCTTAACTCAGGA:W8(V451_D-1)->A:W-1(V466_D-1)) -Found potential edge: Edge(451->467,w:4.0) between GTGTCTTAACTCAGGA:W8(V451_D-1) and G:W-1(V467_D-1) -removing vertex G:W-1(V467_D-1) was concatenated into GTGTCTTAACTCAGGAG:W8(V451_D-1) -Want to move edge Edge(467->468,w:2.0)(G:W-1(V467_D-1)->A:W-1(V468_D-1)) to (GTGTCTTAACTCAGGAG:W8(V451_D-1)->A:W-1(V468_D-1) - adding edge: GTGTCTTAACTCAGGAG:W8(V451_D-1) to A:W-1(V468_D-1) -removing edge Edge(467->468,w:2.0)(G:W-1(V467_D-1)->A:W-1(V468_D-1)) -removing edge Edge(451->467,w:4.0)(GTGTCTTAACTCAGGAG:W8(V451_D-1)->G:W-1(V467_D-1)) -Found potential edge: Edge(451->468,w:2.0) between GTGTCTTAACTCAGGAG:W8(V451_D-1) and A:W-1(V468_D-1) -removing vertex A:W-1(V468_D-1) was concatenated into GTGTCTTAACTCAGGAGA:W7(V451_D-1) -Want to move edge Edge(468->469,w:2.0)(A:W-1(V468_D-1)->T:W-1(V469_D-1)) to (GTGTCTTAACTCAGGAGA:W7(V451_D-1)->T:W-1(V469_D-1) - adding edge: GTGTCTTAACTCAGGAGA:W7(V451_D-1) to T:W-1(V469_D-1) -removing edge Edge(468->469,w:2.0)(A:W-1(V468_D-1)->T:W-1(V469_D-1)) -removing edge Edge(451->468,w:2.0)(GTGTCTTAACTCAGGAGA:W7(V451_D-1)->A:W-1(V468_D-1)) -Found potential edge: Edge(451->469,w:2.0) between GTGTCTTAACTCAGGAGA:W7(V451_D-1) and T:W-1(V469_D-1) -removing vertex T:W-1(V469_D-1) was concatenated into GTGTCTTAACTCAGGAGAT:W7(V451_D-1) -Want to move edge Edge(469->470,w:2.0)(T:W-1(V469_D-1)->C:W-1(V470_D-1)) to (GTGTCTTAACTCAGGAGAT:W7(V451_D-1)->C:W-1(V470_D-1) - adding edge: GTGTCTTAACTCAGGAGAT:W7(V451_D-1) to C:W-1(V470_D-1) -removing edge Edge(469->470,w:2.0)(T:W-1(V469_D-1)->C:W-1(V470_D-1)) -removing edge Edge(451->469,w:2.0)(GTGTCTTAACTCAGGAGAT:W7(V451_D-1)->T:W-1(V469_D-1)) -Found potential edge: Edge(451->470,w:2.0) between GTGTCTTAACTCAGGAGAT:W7(V451_D-1) and C:W-1(V470_D-1) -removing vertex C:W-1(V470_D-1) was concatenated into GTGTCTTAACTCAGGAGATC:W7(V451_D-1) -Want to move edge Edge(470->471,w:2.0)(C:W-1(V470_D-1)->A:W-1(V471_D-1)) to (GTGTCTTAACTCAGGAGATC:W7(V451_D-1)->A:W-1(V471_D-1) - adding edge: GTGTCTTAACTCAGGAGATC:W7(V451_D-1) to A:W-1(V471_D-1) -removing edge Edge(470->471,w:2.0)(C:W-1(V470_D-1)->A:W-1(V471_D-1)) -removing edge Edge(451->470,w:2.0)(GTGTCTTAACTCAGGAGATC:W7(V451_D-1)->C:W-1(V470_D-1)) -Found potential edge: Edge(451->471,w:2.0) between GTGTCTTAACTCAGGAGATC:W7(V451_D-1) and A:W-1(V471_D-1) -removing vertex A:W-1(V471_D-1) was concatenated into GTGTCTTAACTCAGGAGATCA:W6(V451_D-1) -Want to move edge Edge(471->472,w:2.0)(A:W-1(V471_D-1)->T:W-1(V472_D-1)) to (GTGTCTTAACTCAGGAGATCA:W6(V451_D-1)->T:W-1(V472_D-1) - adding edge: GTGTCTTAACTCAGGAGATCA:W6(V451_D-1) to T:W-1(V472_D-1) -removing edge Edge(471->472,w:2.0)(A:W-1(V471_D-1)->T:W-1(V472_D-1)) -removing edge Edge(451->471,w:2.0)(GTGTCTTAACTCAGGAGATCA:W6(V451_D-1)->A:W-1(V471_D-1)) -Found potential edge: Edge(451->472,w:2.0) between GTGTCTTAACTCAGGAGATCA:W6(V451_D-1) and T:W-1(V472_D-1) -removing vertex T:W-1(V472_D-1) was concatenated into GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1) -Want to move edge Edge(472->473,w:2.0)(T:W-1(V472_D-1)->G:W-1(V473_D-1)) to (GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1)->G:W-1(V473_D-1) - adding edge: GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1) to G:W-1(V473_D-1) -removing edge Edge(472->473,w:2.0)(T:W-1(V472_D-1)->G:W-1(V473_D-1)) -removing edge Edge(451->472,w:2.0)(GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1)->T:W-1(V472_D-1)) -Found potential edge: Edge(451->473,w:2.0) between GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1) and G:W-1(V473_D-1) -removing vertex G:W-1(V473_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1) -Want to move edge Edge(473->474,w:4.0)(G:W-1(V473_D-1)->G:W-1(V474_D-1)) to (GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1)->G:W-1(V474_D-1) - adding edge: GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1) to G:W-1(V474_D-1) -removing edge Edge(473->474,w:4.0)(G:W-1(V473_D-1)->G:W-1(V474_D-1)) -removing edge Edge(451->473,w:2.0)(GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1)->G:W-1(V473_D-1)) -Found potential edge: Edge(451->474,w:4.0) between GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1) and G:W-1(V474_D-1) -removing vertex G:W-1(V474_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1) -Want to move edge Edge(474->475,w:2.0)(G:W-1(V474_D-1)->T:W-1(V475_D-1)) to (GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1)->T:W-1(V475_D-1) - adding edge: GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1) to T:W-1(V475_D-1) -removing edge Edge(474->475,w:2.0)(G:W-1(V474_D-1)->T:W-1(V475_D-1)) -removing edge Edge(451->474,w:4.0)(GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1)->G:W-1(V474_D-1)) -Found potential edge: Edge(451->475,w:2.0) between GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1) and T:W-1(V475_D-1) -removing vertex T:W-1(V475_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1) -Want to move edge Edge(475->476,w:2.0)(T:W-1(V475_D-1)->A:W-1(V476_D-1)) to (GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1)->A:W-1(V476_D-1) - adding edge: GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1) to A:W-1(V476_D-1) -removing edge Edge(475->476,w:2.0)(T:W-1(V475_D-1)->A:W-1(V476_D-1)) -removing edge Edge(451->475,w:2.0)(GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1)->T:W-1(V475_D-1)) -Found potential edge: Edge(451->476,w:2.0) between GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1) and A:W-1(V476_D-1) -removing vertex A:W-1(V476_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1) -Want to move edge Edge(476->477,w:2.0)(A:W-1(V476_D-1)->G:W-1(V477_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1)->G:W-1(V477_D-1) - adding edge: GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1) to G:W-1(V477_D-1) -removing edge Edge(476->477,w:2.0)(A:W-1(V476_D-1)->G:W-1(V477_D-1)) -removing edge Edge(451->476,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1)->A:W-1(V476_D-1)) -Found potential edge: Edge(451->477,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1) and G:W-1(V477_D-1) -removing vertex G:W-1(V477_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1) -Want to move edge Edge(477->478,w:2.0)(G:W-1(V477_D-1)->G:W-1(V478_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1)->G:W-1(V478_D-1) - adding edge: GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1) to G:W-1(V478_D-1) -removing edge Edge(477->478,w:2.0)(G:W-1(V477_D-1)->G:W-1(V478_D-1)) -removing edge Edge(451->477,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1)->G:W-1(V477_D-1)) -Found potential edge: Edge(451->478,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1) and G:W-1(V478_D-1) -removing vertex G:W-1(V478_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1) -Want to move edge Edge(478->479,w:2.0)(G:W-1(V478_D-1)->G:W-1(V479_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1)->G:W-1(V479_D-1) - adding edge: GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1) to G:W-1(V479_D-1) -removing edge Edge(478->479,w:2.0)(G:W-1(V478_D-1)->G:W-1(V479_D-1)) -removing edge Edge(451->478,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1)->G:W-1(V478_D-1)) -Found potential edge: Edge(451->479,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1) and G:W-1(V479_D-1) -removing vertex G:W-1(V479_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1) -Want to move edge Edge(479->480,w:2.0)(G:W-1(V479_D-1)->A:W-1(V480_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1)->A:W-1(V480_D-1) - adding edge: GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1) to A:W-1(V480_D-1) -removing edge Edge(479->480,w:2.0)(G:W-1(V479_D-1)->A:W-1(V480_D-1)) -removing edge Edge(451->479,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1)->G:W-1(V479_D-1)) -Found potential edge: Edge(451->480,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1) and A:W-1(V480_D-1) -removing vertex A:W-1(V480_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1) -Want to move edge Edge(480->481,w:2.0)(A:W-1(V480_D-1)->A:W-1(V481_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1)->A:W-1(V481_D-1) - adding edge: GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1) to A:W-1(V481_D-1) -removing edge Edge(480->481,w:2.0)(A:W-1(V480_D-1)->A:W-1(V481_D-1)) -removing edge Edge(451->480,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1)->A:W-1(V480_D-1)) -Found potential edge: Edge(451->481,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1) and A:W-1(V481_D-1) -removing vertex A:W-1(V481_D-1) was concatenated into GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1) -Want to move edge Edge(481->482,w:2.0)(A:W-1(V481_D-1)->G:W-1(V482_D-1)) to (GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1)->G:W-1(V482_D-1) - adding edge: GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1) to G:W-1(V482_D-1) -removing edge Edge(481->482,w:2.0)(A:W-1(V481_D-1)->G:W-1(V482_D-1)) -removing edge Edge(451->481,w:2.0)(GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1)->A:W-1(V481_D-1)) -Found potential edge: Edge(451->482,w:2.0) between GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1) and G:W-1(V482_D-1) -removing vertex G:W-1(V482_D-1) was concatenated into GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1) -Want to move edge Edge(482->483,w:2.0)(G:W-1(V482_D-1)->G:W-1(V483_D-1)) to (GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1)->G:W-1(V483_D-1) - adding edge: GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1) to G:W-1(V483_D-1) -removing edge Edge(482->483,w:2.0)(G:W-1(V482_D-1)->G:W-1(V483_D-1)) -removing edge Edge(451->482,w:2.0)(GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1)->G:W-1(V482_D-1)) -Found potential edge: Edge(451->483,w:2.0) between GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1) and G:W-1(V483_D-1) -removing vertex G:W-1(V483_D-1) was concatenated into GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1) -Want to move edge Edge(483->484,w:2.0)(G:W-1(V483_D-1)->G:W-1(V484_D-1)) to (GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1)->G:W-1(V484_D-1) - adding edge: GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1) to G:W-1(V484_D-1) -removing edge Edge(483->484,w:2.0)(G:W-1(V483_D-1)->G:W-1(V484_D-1)) -removing edge Edge(451->483,w:2.0)(GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1)->G:W-1(V483_D-1)) -Found potential edge: Edge(451->484,w:2.0) between GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1) and G:W-1(V484_D-1) -removing vertex G:W-1(V484_D-1) was concatenated into GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1) -Want to move edge Edge(484->485,w:2.0)(G:W-1(V484_D-1)->G:W-1(V485_D-1)) to (GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1)->G:W-1(V485_D-1) - adding edge: GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1) to G:W-1(V485_D-1) -removing edge Edge(484->485,w:2.0)(G:W-1(V484_D-1)->G:W-1(V485_D-1)) -removing edge Edge(451->484,w:2.0)(GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1)->G:W-1(V484_D-1)) -Found potential edge: Edge(451->485,w:2.0) between GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1) and G:W-1(V485_D-1) -removing vertex G:W-1(V485_D-1) was concatenated into GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1) -Want to move edge Edge(485->486,w:4.0)(G:W-1(V485_D-1)->T:W-1(V486_D-1)) to (GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1)->T:W-1(V486_D-1) - adding edge: GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1) to T:W-1(V486_D-1) -removing edge Edge(485->486,w:4.0)(G:W-1(V485_D-1)->T:W-1(V486_D-1)) -removing edge Edge(451->485,w:2.0)(GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1)->G:W-1(V485_D-1)) -Found potential edge: Edge(451->486,w:4.0) between GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1) and T:W-1(V486_D-1) -removing vertex T:W-1(V486_D-1) was concatenated into GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1) -Want to move edge Edge(486->487,w:4.0)(T:W-1(V486_D-1)->C:W-1(V487_D-1)) to (GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1)->C:W-1(V487_D-1) - adding edge: GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1) to C:W-1(V487_D-1) -removing edge Edge(486->487,w:4.0)(T:W-1(V486_D-1)->C:W-1(V487_D-1)) -removing edge Edge(451->486,w:4.0)(GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1)->T:W-1(V486_D-1)) -Found potential edge: Edge(451->487,w:4.0) between GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1) and C:W-1(V487_D-1) -removing vertex C:W-1(V487_D-1) was concatenated into GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1) -Want to move edge Edge(487->488,w:4.0)(C:W-1(V487_D-1)->A:W-1(V488_D-1)) to (GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1)->A:W-1(V488_D-1) - adding edge: GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1) to A:W-1(V488_D-1) -removing edge Edge(487->488,w:4.0)(C:W-1(V487_D-1)->A:W-1(V488_D-1)) -removing edge Edge(451->487,w:4.0)(GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1)->C:W-1(V487_D-1)) -Found potential edge: Edge(451->488,w:4.0) between GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1) and A:W-1(V488_D-1) -removing vertex A:W-1(V488_D-1) was concatenated into GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1) -Want to move edge Edge(488->489,w:4.0)(A:W-1(V488_D-1)->G:W-1(V489_D-1)) to (GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1)->G:W-1(V489_D-1) - adding edge: GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1) to G:W-1(V489_D-1) -removing edge Edge(488->489,w:4.0)(A:W-1(V488_D-1)->G:W-1(V489_D-1)) -removing edge Edge(451->488,w:4.0)(GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1)->A:W-1(V488_D-1)) -Found potential edge: Edge(451->489,w:4.0) between GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1) and G:W-1(V489_D-1) -removing vertex G:W-1(V489_D-1) was concatenated into GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1) -Want to move edge Edge(489->490,w:4.0)(G:W-1(V489_D-1)->G:W-1(V490_D-1)) to (GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1)->G:W-1(V490_D-1) - adding edge: GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1) to G:W-1(V490_D-1) -removing edge Edge(489->490,w:4.0)(G:W-1(V489_D-1)->G:W-1(V490_D-1)) -removing edge Edge(451->489,w:4.0)(GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1)->G:W-1(V489_D-1)) -Found potential edge: Edge(451->490,w:4.0) between GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1) and G:W-1(V490_D-1) -removing vertex G:W-1(V490_D-1) was concatenated into GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1) -Want to move edge Edge(490->491,w:4.0)(G:W-1(V490_D-1)->C:W-1(V491_D-1)) to (GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1)->C:W-1(V491_D-1) - adding edge: GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1) to C:W-1(V491_D-1) -removing edge Edge(490->491,w:4.0)(G:W-1(V490_D-1)->C:W-1(V491_D-1)) -removing edge Edge(451->490,w:4.0)(GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1)->G:W-1(V490_D-1)) -Found potential edge: Edge(451->491,w:4.0) between GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1) and C:W-1(V491_D-1) -removing vertex C:W-1(V491_D-1) was concatenated into GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1) -Want to move edge Edge(491->492,w:4.0)(C:W-1(V491_D-1)->C:W-1(V492_D-1)) to (GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1)->C:W-1(V492_D-1) - adding edge: GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1) to C:W-1(V492_D-1) -removing edge Edge(491->492,w:4.0)(C:W-1(V491_D-1)->C:W-1(V492_D-1)) -removing edge Edge(451->491,w:4.0)(GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1)->C:W-1(V491_D-1)) -Found potential edge: Edge(451->492,w:4.0) between GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1) and C:W-1(V492_D-1) -removing vertex C:W-1(V492_D-1) was concatenated into GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1) -Want to move edge Edge(492->493,w:4.0)(C:W-1(V492_D-1)->A:W-1(V493_D-1)) to (GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1)->A:W-1(V493_D-1) - adding edge: GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1) to A:W-1(V493_D-1) -removing edge Edge(492->493,w:4.0)(C:W-1(V492_D-1)->A:W-1(V493_D-1)) -removing edge Edge(451->492,w:4.0)(GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1)->C:W-1(V492_D-1)) -Found potential edge: Edge(451->493,w:4.0) between GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1) and A:W-1(V493_D-1) -removing vertex A:W-1(V493_D-1) was concatenated into GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1) -Want to move edge Edge(493->494,w:4.0)(A:W-1(V493_D-1)->C:W-1(V494_D-1)) to (GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1)->C:W-1(V494_D-1) - adding edge: GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1) to C:W-1(V494_D-1) -removing edge Edge(493->494,w:4.0)(A:W-1(V493_D-1)->C:W-1(V494_D-1)) -removing edge Edge(451->493,w:4.0)(GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1)->A:W-1(V493_D-1)) -Found potential edge: Edge(451->494,w:4.0) between GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1) and C:W-1(V494_D-1) -removing vertex C:W-1(V494_D-1) was concatenated into GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1) -Want to move edge Edge(494->495,w:4.0)(C:W-1(V494_D-1)->T:W-1(V495_D-1)) to (GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1)->T:W-1(V495_D-1) - adding edge: GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1) to T:W-1(V495_D-1) -removing edge Edge(494->495,w:4.0)(C:W-1(V494_D-1)->T:W-1(V495_D-1)) -removing edge Edge(451->494,w:4.0)(GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1)->C:W-1(V494_D-1)) -Found potential edge: Edge(451->495,w:4.0) between GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1) and T:W-1(V495_D-1) -removing vertex T:W-1(V495_D-1) was concatenated into GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1) -Want to move edge Edge(495->496,w:4.0)(T:W-1(V495_D-1)->T:W-1(V496_D-1)) to (GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1)->T:W-1(V496_D-1) - adding edge: GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1) to T:W-1(V496_D-1) -removing edge Edge(495->496,w:4.0)(T:W-1(V495_D-1)->T:W-1(V496_D-1)) -removing edge Edge(451->495,w:4.0)(GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1)->T:W-1(V495_D-1)) -Found potential edge: Edge(451->496,w:4.0) between GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1) and T:W-1(V496_D-1) -removing vertex T:W-1(V496_D-1) was concatenated into GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1) -Want to move edge Edge(496->497,w:4.0)(T:W-1(V496_D-1)->C:W-1(V497_D-1)) to (GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1)->C:W-1(V497_D-1) - adding edge: GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1) to C:W-1(V497_D-1) -removing edge Edge(496->497,w:4.0)(T:W-1(V496_D-1)->C:W-1(V497_D-1)) -removing edge Edge(451->496,w:4.0)(GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1)->T:W-1(V496_D-1)) -Found potential edge: Edge(451->497,w:4.0) between GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1) and C:W-1(V497_D-1) -removing vertex C:W-1(V497_D-1) was concatenated into GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1) -Want to move edge Edge(497->498,w:4.0)(C:W-1(V497_D-1)->A:W-1(V498_D-1)) to (GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1)->A:W-1(V498_D-1) - adding edge: GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1) to A:W-1(V498_D-1) -removing edge Edge(497->498,w:4.0)(C:W-1(V497_D-1)->A:W-1(V498_D-1)) -removing edge Edge(451->497,w:4.0)(GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1)->C:W-1(V497_D-1)) -Found potential edge: Edge(451->498,w:4.0) between GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1) and A:W-1(V498_D-1) -removing vertex A:W-1(V498_D-1) was concatenated into GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1) -Want to move edge Edge(498->499,w:4.0)(A:W-1(V498_D-1)->C:W-1(V499_D-1)) to (GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1)->C:W-1(V499_D-1) - adding edge: GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1) to C:W-1(V499_D-1) -removing edge Edge(498->499,w:4.0)(A:W-1(V498_D-1)->C:W-1(V499_D-1)) -removing edge Edge(451->498,w:4.0)(GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1)->A:W-1(V498_D-1)) -Found potential edge: Edge(451->499,w:4.0) between GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1) and C:W-1(V499_D-1) -removing vertex C:W-1(V499_D-1) was concatenated into GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1) -Want to move edge Edge(499->500,w:4.0)(C:W-1(V499_D-1)->A:W-1(V500_D-1)) to (GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1)->A:W-1(V500_D-1) - adding edge: GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1) to A:W-1(V500_D-1) -removing edge Edge(499->500,w:4.0)(C:W-1(V499_D-1)->A:W-1(V500_D-1)) -removing edge Edge(451->499,w:4.0)(GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1)->C:W-1(V499_D-1)) -Found potential edge: Edge(451->500,w:4.0) between GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1) and A:W-1(V500_D-1) -removing vertex A:W-1(V500_D-1) was concatenated into GTGTCTTAAC...CCACTTCACA:W4(V451_D-1) -Want to move edge Edge(500->501,w:4.0)(A:W-1(V500_D-1)->A:W-1(V501_D-1)) to (GTGTCTTAAC...CCACTTCACA:W4(V451_D-1)->A:W-1(V501_D-1) - adding edge: GTGTCTTAAC...CCACTTCACA:W4(V451_D-1) to A:W-1(V501_D-1) -removing edge Edge(500->501,w:4.0)(A:W-1(V500_D-1)->A:W-1(V501_D-1)) -removing edge Edge(451->500,w:4.0)(GTGTCTTAAC...CCACTTCACA:W4(V451_D-1)->A:W-1(V500_D-1)) -Found potential edge: Edge(451->501,w:4.0) between GTGTCTTAAC...CCACTTCACA:W4(V451_D-1) and A:W-1(V501_D-1) -removing vertex A:W-1(V501_D-1) was concatenated into GTGTCTTAAC...CACTTCACAA:W4(V451_D-1) -Want to move edge Edge(501->502,w:4.0)(A:W-1(V501_D-1)->G:W-1(V502_D-1)) to (GTGTCTTAAC...CACTTCACAA:W4(V451_D-1)->G:W-1(V502_D-1) - adding edge: GTGTCTTAAC...CACTTCACAA:W4(V451_D-1) to G:W-1(V502_D-1) -removing edge Edge(501->502,w:4.0)(A:W-1(V501_D-1)->G:W-1(V502_D-1)) -removing edge Edge(451->501,w:4.0)(GTGTCTTAAC...CACTTCACAA:W4(V451_D-1)->A:W-1(V501_D-1)) -Found potential edge: Edge(451->502,w:4.0) between GTGTCTTAAC...CACTTCACAA:W4(V451_D-1) and G:W-1(V502_D-1) -removing vertex G:W-1(V502_D-1) was concatenated into GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1) -Want to move edge Edge(502->503,w:6.0)(G:W-1(V502_D-1)->G:W-1(V503_D-1)) to (GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1)->G:W-1(V503_D-1) - adding edge: GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1) to G:W-1(V503_D-1) -removing edge Edge(502->503,w:6.0)(G:W-1(V502_D-1)->G:W-1(V503_D-1)) -removing edge Edge(451->502,w:4.0)(GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1)->G:W-1(V502_D-1)) -Found potential edge: Edge(451->503,w:6.0) between GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1) and G:W-1(V503_D-1) -removing vertex G:W-1(V503_D-1) was concatenated into GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1) -Want to move edge Edge(503->504,w:6.0)(G:W-1(V503_D-1)->A:W-1(V504_D-1)) to (GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1)->A:W-1(V504_D-1) - adding edge: GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1) to A:W-1(V504_D-1) -removing edge Edge(503->504,w:6.0)(G:W-1(V503_D-1)->A:W-1(V504_D-1)) -removing edge Edge(451->503,w:6.0)(GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1)->G:W-1(V503_D-1)) -Found potential edge: Edge(451->504,w:6.0) between GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1) and A:W-1(V504_D-1) -removing vertex A:W-1(V504_D-1) was concatenated into GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1) -Want to move edge Edge(504->505,w:8.0)(A:W-1(V504_D-1)->G:W-1(V505_D-1)) to (GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1)->G:W-1(V505_D-1) - adding edge: GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1) to G:W-1(V505_D-1) -removing edge Edge(504->505,w:8.0)(A:W-1(V504_D-1)->G:W-1(V505_D-1)) -removing edge Edge(451->504,w:6.0)(GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1)->A:W-1(V504_D-1)) -Found potential edge: Edge(451->505,w:8.0) between GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1) and G:W-1(V505_D-1) -removing vertex G:W-1(V505_D-1) was concatenated into GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1) -Want to move edge Edge(505->506,w:8.0)(G:W-1(V505_D-1)->C:W-1(V506_D-1)) to (GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1)->C:W-1(V506_D-1) - adding edge: GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1) to C:W-1(V506_D-1) -removing edge Edge(505->506,w:8.0)(G:W-1(V505_D-1)->C:W-1(V506_D-1)) -removing edge Edge(451->505,w:8.0)(GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1)->G:W-1(V505_D-1)) -Found potential edge: Edge(451->506,w:8.0) between GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1) and C:W-1(V506_D-1) -removing vertex C:W-1(V506_D-1) was concatenated into GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1) -Want to move edge Edge(506->507,w:8.0)(C:W-1(V506_D-1)->A:W-1(V507_D-1)) to (GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1)->A:W-1(V507_D-1) - adding edge: GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1) to A:W-1(V507_D-1) -removing edge Edge(506->507,w:8.0)(C:W-1(V506_D-1)->A:W-1(V507_D-1)) -removing edge Edge(451->506,w:8.0)(GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1)->C:W-1(V506_D-1)) -Found potential edge: Edge(451->507,w:8.0) between GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1) and A:W-1(V507_D-1) -removing vertex A:W-1(V507_D-1) was concatenated into GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1) -Want to move edge Edge(507->508,w:10.0)(A:W-1(V507_D-1)->G:W-1(V508_D-1)) to (GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1)->G:W-1(V508_D-1) - adding edge: GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1) to G:W-1(V508_D-1) -removing edge Edge(507->508,w:10.0)(A:W-1(V507_D-1)->G:W-1(V508_D-1)) -removing edge Edge(451->507,w:8.0)(GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1)->A:W-1(V507_D-1)) -Found potential edge: Edge(451->508,w:10.0) between GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1) and G:W-1(V508_D-1) -removing vertex G:W-1(V508_D-1) was concatenated into GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1) -Want to move edge Edge(508->509,w:10.0)(G:W-1(V508_D-1)->A:W-1(V509_D-1)) to (GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1)->A:W-1(V509_D-1) - adding edge: GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1) to A:W-1(V509_D-1) -removing edge Edge(508->509,w:10.0)(G:W-1(V508_D-1)->A:W-1(V509_D-1)) -removing edge Edge(451->508,w:10.0)(GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1)->G:W-1(V508_D-1)) -Found potential edge: Edge(451->509,w:10.0) between GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1) and A:W-1(V509_D-1) -removing vertex A:W-1(V509_D-1) was concatenated into GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1) -Want to move edge Edge(509->510,w:10.0)(A:W-1(V509_D-1)->G:W-1(V510_D-1)) to (GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1)->G:W-1(V510_D-1) - adding edge: GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1) to G:W-1(V510_D-1) -removing edge Edge(509->510,w:10.0)(A:W-1(V509_D-1)->G:W-1(V510_D-1)) -removing edge Edge(451->509,w:10.0)(GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1)->A:W-1(V509_D-1)) -Found potential edge: Edge(451->510,w:10.0) between GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1) and G:W-1(V510_D-1) -removing vertex G:W-1(V510_D-1) was concatenated into GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1) -Want to move edge Edge(510->511,w:10.0)(G:W-1(V510_D-1)->T:W-1(V511_D-1)) to (GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1)->T:W-1(V511_D-1) - adding edge: GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1) to T:W-1(V511_D-1) -removing edge Edge(510->511,w:10.0)(G:W-1(V510_D-1)->T:W-1(V511_D-1)) -removing edge Edge(451->510,w:10.0)(GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1)->G:W-1(V510_D-1)) -Found potential edge: Edge(451->511,w:10.0) between GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1) and T:W-1(V511_D-1) -removing vertex T:W-1(V511_D-1) was concatenated into GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1) -Want to move edge Edge(511->512,w:10.0)(T:W-1(V511_D-1)->T:W-1(V512_D-1)) to (GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1)->T:W-1(V512_D-1) - adding edge: GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1) to T:W-1(V512_D-1) -removing edge Edge(511->512,w:10.0)(T:W-1(V511_D-1)->T:W-1(V512_D-1)) -removing edge Edge(451->511,w:10.0)(GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1)->T:W-1(V511_D-1)) -Found potential edge: Edge(451->512,w:10.0) between GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1) and T:W-1(V512_D-1) -removing vertex T:W-1(V512_D-1) was concatenated into GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1) -Want to move edge Edge(512->513,w:10.0)(T:W-1(V512_D-1)->A:W-1(V513_D-1)) to (GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1)->A:W-1(V513_D-1) - adding edge: GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1) to A:W-1(V513_D-1) -removing edge Edge(512->513,w:10.0)(T:W-1(V512_D-1)->A:W-1(V513_D-1)) -removing edge Edge(451->512,w:10.0)(GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1)->T:W-1(V512_D-1)) -Found potential edge: Edge(451->513,w:10.0) between GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1) and A:W-1(V513_D-1) -removing vertex A:W-1(V513_D-1) was concatenated into GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1) -Want to move edge Edge(513->514,w:10.0)(A:W-1(V513_D-1)->G:W-1(V514_D-1)) to (GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1)->G:W-1(V514_D-1) - adding edge: GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1) to G:W-1(V514_D-1) -removing edge Edge(513->514,w:10.0)(A:W-1(V513_D-1)->G:W-1(V514_D-1)) -removing edge Edge(451->513,w:10.0)(GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1)->A:W-1(V513_D-1)) -Found potential edge: Edge(451->514,w:10.0) between GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1) and G:W-1(V514_D-1) -removing vertex G:W-1(V514_D-1) was concatenated into GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1) -Want to move edge Edge(514->515,w:10.0)(G:W-1(V514_D-1)->G:W-1(V515_D-1)) to (GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1)->G:W-1(V515_D-1) - adding edge: GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1) to G:W-1(V515_D-1) -removing edge Edge(514->515,w:10.0)(G:W-1(V514_D-1)->G:W-1(V515_D-1)) -removing edge Edge(451->514,w:10.0)(GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1)->G:W-1(V514_D-1)) -Found potential edge: Edge(451->515,w:10.0) between GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1) and G:W-1(V515_D-1) -removing vertex G:W-1(V515_D-1) was concatenated into GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1) -Want to move edge Edge(515->516,w:10.0)(G:W-1(V515_D-1)->A:W-1(V516_D-1)) to (GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1)->A:W-1(V516_D-1) - adding edge: GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1) to A:W-1(V516_D-1) -removing edge Edge(515->516,w:10.0)(G:W-1(V515_D-1)->A:W-1(V516_D-1)) -removing edge Edge(451->515,w:10.0)(GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1)->G:W-1(V515_D-1)) -Found potential edge: Edge(451->516,w:10.0) between GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1) and A:W-1(V516_D-1) -removing vertex A:W-1(V516_D-1) was concatenated into GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1) -Want to move edge Edge(516->517,w:10.0)(A:W-1(V516_D-1)->A:W-1(V517_D-1)) to (GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1)->A:W-1(V517_D-1) - adding edge: GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1) to A:W-1(V517_D-1) -removing edge Edge(516->517,w:10.0)(A:W-1(V516_D-1)->A:W-1(V517_D-1)) -removing edge Edge(451->516,w:10.0)(GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1)->A:W-1(V516_D-1)) -Found potential edge: Edge(451->517,w:10.0) between GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1) and A:W-1(V517_D-1) -removing vertex A:W-1(V517_D-1) was concatenated into GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1) -Want to move edge Edge(517->518,w:10.0)(A:W-1(V517_D-1)->G:W-1(V518_D-1)) to (GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1)->G:W-1(V518_D-1) - adding edge: GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1) to G:W-1(V518_D-1) -removing edge Edge(517->518,w:10.0)(A:W-1(V517_D-1)->G:W-1(V518_D-1)) -removing edge Edge(451->517,w:10.0)(GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1)->A:W-1(V517_D-1)) -Found potential edge: Edge(451->518,w:10.0) between GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1) and G:W-1(V518_D-1) -removing vertex G:W-1(V518_D-1) was concatenated into GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1) -Want to move edge Edge(518->519,w:10.0)(G:W-1(V518_D-1)->C:W-1(V519_D-1)) to (GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1)->C:W-1(V519_D-1) - adding edge: GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1) to C:W-1(V519_D-1) -removing edge Edge(518->519,w:10.0)(G:W-1(V518_D-1)->C:W-1(V519_D-1)) -removing edge Edge(451->518,w:10.0)(GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1)->G:W-1(V518_D-1)) -Found potential edge: Edge(451->519,w:10.0) between GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1) and C:W-1(V519_D-1) -removing vertex C:W-1(V519_D-1) was concatenated into GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1) -Want to move edge Edge(519->520,w:10.0)(C:W-1(V519_D-1)->T:W-1(V520_D-1)) to (GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1)->T:W-1(V520_D-1) - adding edge: GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1) to T:W-1(V520_D-1) -removing edge Edge(519->520,w:10.0)(C:W-1(V519_D-1)->T:W-1(V520_D-1)) -removing edge Edge(451->519,w:10.0)(GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1)->C:W-1(V519_D-1)) -Found potential edge: Edge(451->520,w:10.0) between GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1) and T:W-1(V520_D-1) -removing vertex T:W-1(V520_D-1) was concatenated into GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1) -Want to move edge Edge(520->521,w:10.0)(T:W-1(V520_D-1)->C:W-1(V521_D-1)) to (GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1)->C:W-1(V521_D-1) - adding edge: GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1) to C:W-1(V521_D-1) -removing edge Edge(520->521,w:10.0)(T:W-1(V520_D-1)->C:W-1(V521_D-1)) -removing edge Edge(451->520,w:10.0)(GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1)->T:W-1(V520_D-1)) -Found potential edge: Edge(451->521,w:10.0) between GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1) and C:W-1(V521_D-1) -removing vertex C:W-1(V521_D-1) was concatenated into GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1) -Want to move edge Edge(521->522,w:10.0)(C:W-1(V521_D-1)->C:W-1(V522_D-1)) to (GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1)->C:W-1(V522_D-1) - adding edge: GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1) to C:W-1(V522_D-1) -removing edge Edge(521->522,w:10.0)(C:W-1(V521_D-1)->C:W-1(V522_D-1)) -removing edge Edge(451->521,w:10.0)(GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1)->C:W-1(V521_D-1)) -Found potential edge: Edge(451->522,w:10.0) between GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1) and C:W-1(V522_D-1) -removing vertex C:W-1(V522_D-1) was concatenated into GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1) -Want to move edge Edge(522->523,w:10.0)(C:W-1(V522_D-1)->C:W-1(V523_D-1)) to (GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1)->C:W-1(V523_D-1) - adding edge: GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1) to C:W-1(V523_D-1) -removing edge Edge(522->523,w:10.0)(C:W-1(V522_D-1)->C:W-1(V523_D-1)) -removing edge Edge(451->522,w:10.0)(GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1)->C:W-1(V522_D-1)) -Found potential edge: Edge(451->523,w:10.0) between GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1) and C:W-1(V523_D-1) -removing vertex C:W-1(V523_D-1) was concatenated into GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1) -Want to move edge Edge(523->524,w:10.0)(C:W-1(V523_D-1)->T:W-1(V524_D-1)) to (GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1)->T:W-1(V524_D-1) - adding edge: GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1) to T:W-1(V524_D-1) -removing edge Edge(523->524,w:10.0)(C:W-1(V523_D-1)->T:W-1(V524_D-1)) -removing edge Edge(451->523,w:10.0)(GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1)->C:W-1(V523_D-1)) -Found potential edge: Edge(451->524,w:10.0) between GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1) and T:W-1(V524_D-1) -removing vertex T:W-1(V524_D-1) was concatenated into GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) -Want to move edge Edge(524->525,w:8.0)(T:W-1(V524_D-1)->G:W-1(V525_D-1)) to (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)->G:W-1(V525_D-1) - adding edge: GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) to G:W-1(V525_D-1) -Want to move edge Edge(524->813,w:2.0)(T:W-1(V524_D-1)->C:W-1(V813_D-1)) to (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)->C:W-1(V813_D-1) - adding edge: GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) to C:W-1(V813_D-1) -removing edge Edge(524->525,w:8.0)(T:W-1(V524_D-1)->G:W-1(V525_D-1)) -removing edge Edge(524->813,w:2.0)(T:W-1(V524_D-1)->C:W-1(V813_D-1)) -removing edge Edge(451->524,w:10.0)(GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)->T:W-1(V524_D-1)) -Found potential edge: Edge(525->526,w:6.0) between G:W-1(V525_D-1) and A:W-1(V526_D-1) -removing vertex A:W-1(V526_D-1) was concatenated into GA:W6(V525_D-1) -Want to move edge Edge(526->527,w:6.0)(A:W-1(V526_D-1)->G:W-1(V527_D-1)) to (GA:W6(V525_D-1)->G:W-1(V527_D-1) - adding edge: GA:W6(V525_D-1) to G:W-1(V527_D-1) -removing edge Edge(526->527,w:6.0)(A:W-1(V526_D-1)->G:W-1(V527_D-1)) -removing edge Edge(525->526,w:6.0)(GA:W6(V525_D-1)->A:W-1(V526_D-1)) -Found potential edge: Edge(525->527,w:6.0) between GA:W6(V525_D-1) and G:W-1(V527_D-1) -removing vertex G:W-1(V527_D-1) was concatenated into GAG:W6(V525_D-1) -Want to move edge Edge(527->528,w:6.0)(G:W-1(V527_D-1)->C:W-1(V528_D-1)) to (GAG:W6(V525_D-1)->C:W-1(V528_D-1) - adding edge: GAG:W6(V525_D-1) to C:W-1(V528_D-1) -removing edge Edge(527->528,w:6.0)(G:W-1(V527_D-1)->C:W-1(V528_D-1)) -removing edge Edge(525->527,w:6.0)(GAG:W6(V525_D-1)->G:W-1(V527_D-1)) -Found potential edge: Edge(525->528,w:6.0) between GAG:W6(V525_D-1) and C:W-1(V528_D-1) -removing vertex C:W-1(V528_D-1) was concatenated into GAGC:W6(V525_D-1) -Want to move edge Edge(528->529,w:6.0)(C:W-1(V528_D-1)->A:W-1(V529_D-1)) to (GAGC:W6(V525_D-1)->A:W-1(V529_D-1) - adding edge: GAGC:W6(V525_D-1) to A:W-1(V529_D-1) -removing edge Edge(528->529,w:6.0)(C:W-1(V528_D-1)->A:W-1(V529_D-1)) -removing edge Edge(525->528,w:6.0)(GAGC:W6(V525_D-1)->C:W-1(V528_D-1)) -Found potential edge: Edge(525->529,w:6.0) between GAGC:W6(V525_D-1) and A:W-1(V529_D-1) -removing vertex A:W-1(V529_D-1) was concatenated into GAGCA:W6(V525_D-1) -Want to move edge Edge(529->530,w:6.0)(A:W-1(V529_D-1)->C:W-1(V530_D-1)) to (GAGCA:W6(V525_D-1)->C:W-1(V530_D-1) - adding edge: GAGCA:W6(V525_D-1) to C:W-1(V530_D-1) -removing edge Edge(529->530,w:6.0)(A:W-1(V529_D-1)->C:W-1(V530_D-1)) -removing edge Edge(525->529,w:6.0)(GAGCA:W6(V525_D-1)->A:W-1(V529_D-1)) -Found potential edge: Edge(525->530,w:6.0) between GAGCA:W6(V525_D-1) and C:W-1(V530_D-1) -removing vertex C:W-1(V530_D-1) was concatenated into GAGCAC:W6(V525_D-1) -Want to move edge Edge(530->531,w:6.0)(C:W-1(V530_D-1)->T:W-1(V531_D-1)) to (GAGCAC:W6(V525_D-1)->T:W-1(V531_D-1) - adding edge: GAGCAC:W6(V525_D-1) to T:W-1(V531_D-1) -removing edge Edge(530->531,w:6.0)(C:W-1(V530_D-1)->T:W-1(V531_D-1)) -removing edge Edge(525->530,w:6.0)(GAGCAC:W6(V525_D-1)->C:W-1(V530_D-1)) -Found potential edge: Edge(525->531,w:6.0) between GAGCAC:W6(V525_D-1) and T:W-1(V531_D-1) -removing vertex T:W-1(V531_D-1) was concatenated into GAGCACT:W6(V525_D-1) -Want to move edge Edge(531->532,w:6.0)(T:W-1(V531_D-1)->C:W-1(V532_D-1)) to (GAGCACT:W6(V525_D-1)->C:W-1(V532_D-1) - adding edge: GAGCACT:W6(V525_D-1) to C:W-1(V532_D-1) -removing edge Edge(531->532,w:6.0)(T:W-1(V531_D-1)->C:W-1(V532_D-1)) -removing edge Edge(525->531,w:6.0)(GAGCACT:W6(V525_D-1)->T:W-1(V531_D-1)) -Found potential edge: Edge(525->532,w:6.0) between GAGCACT:W6(V525_D-1) and C:W-1(V532_D-1) -removing vertex C:W-1(V532_D-1) was concatenated into GAGCACTC:W6(V525_D-1) -Want to move edge Edge(532->533,w:6.0)(C:W-1(V532_D-1)->T:W-1(V533_D-1)) to (GAGCACTC:W6(V525_D-1)->T:W-1(V533_D-1) - adding edge: GAGCACTC:W6(V525_D-1) to T:W-1(V533_D-1) -removing edge Edge(532->533,w:6.0)(C:W-1(V532_D-1)->T:W-1(V533_D-1)) -removing edge Edge(525->532,w:6.0)(GAGCACTC:W6(V525_D-1)->C:W-1(V532_D-1)) -Found potential edge: Edge(525->533,w:6.0) between GAGCACTC:W6(V525_D-1) and T:W-1(V533_D-1) -removing vertex T:W-1(V533_D-1) was concatenated into GAGCACTCT:W6(V525_D-1) -Want to move edge Edge(533->534,w:6.0)(T:W-1(V533_D-1)->G:W-1(V534_D-1)) to (GAGCACTCT:W6(V525_D-1)->G:W-1(V534_D-1) - adding edge: GAGCACTCT:W6(V525_D-1) to G:W-1(V534_D-1) -removing edge Edge(533->534,w:6.0)(T:W-1(V533_D-1)->G:W-1(V534_D-1)) -removing edge Edge(525->533,w:6.0)(GAGCACTCT:W6(V525_D-1)->T:W-1(V533_D-1)) -Found potential edge: Edge(525->534,w:6.0) between GAGCACTCT:W6(V525_D-1) and G:W-1(V534_D-1) -removing vertex G:W-1(V534_D-1) was concatenated into GAGCACTCTG:W6(V525_D-1) -Want to move edge Edge(534->535,w:6.0)(G:W-1(V534_D-1)->A:W-1(V535_D-1)) to (GAGCACTCTG:W6(V525_D-1)->A:W-1(V535_D-1) - adding edge: GAGCACTCTG:W6(V525_D-1) to A:W-1(V535_D-1) -removing edge Edge(534->535,w:6.0)(G:W-1(V534_D-1)->A:W-1(V535_D-1)) -removing edge Edge(525->534,w:6.0)(GAGCACTCTG:W6(V525_D-1)->G:W-1(V534_D-1)) -Found potential edge: Edge(525->535,w:6.0) between GAGCACTCTG:W6(V525_D-1) and A:W-1(V535_D-1) -removing vertex A:W-1(V535_D-1) was concatenated into GAGCACTCTGA:W6(V525_D-1) -Want to move edge Edge(535->536,w:6.0)(A:W-1(V535_D-1)->A:W-1(V536_D-1)) to (GAGCACTCTGA:W6(V525_D-1)->A:W-1(V536_D-1) - adding edge: GAGCACTCTGA:W6(V525_D-1) to A:W-1(V536_D-1) -removing edge Edge(535->536,w:6.0)(A:W-1(V535_D-1)->A:W-1(V536_D-1)) -removing edge Edge(525->535,w:6.0)(GAGCACTCTGA:W6(V525_D-1)->A:W-1(V535_D-1)) -Found potential edge: Edge(525->536,w:6.0) between GAGCACTCTGA:W6(V525_D-1) and A:W-1(V536_D-1) -removing vertex A:W-1(V536_D-1) was concatenated into GAGCACTCTGAA:W6(V525_D-1) -Want to move edge Edge(536->537,w:6.0)(A:W-1(V536_D-1)->C:W-1(V537_D-1)) to (GAGCACTCTGAA:W6(V525_D-1)->C:W-1(V537_D-1) - adding edge: GAGCACTCTGAA:W6(V525_D-1) to C:W-1(V537_D-1) -removing edge Edge(536->537,w:6.0)(A:W-1(V536_D-1)->C:W-1(V537_D-1)) -removing edge Edge(525->536,w:6.0)(GAGCACTCTGAA:W6(V525_D-1)->A:W-1(V536_D-1)) -Found potential edge: Edge(525->537,w:6.0) between GAGCACTCTGAA:W6(V525_D-1) and C:W-1(V537_D-1) -removing vertex C:W-1(V537_D-1) was concatenated into GAGCACTCTGAAC:W6(V525_D-1) -Want to move edge Edge(537->538,w:4.0)(C:W-1(V537_D-1)->C:W-1(V538_D-1)) to (GAGCACTCTGAAC:W6(V525_D-1)->C:W-1(V538_D-1) - adding edge: GAGCACTCTGAAC:W6(V525_D-1) to C:W-1(V538_D-1) -removing edge Edge(537->538,w:4.0)(C:W-1(V537_D-1)->C:W-1(V538_D-1)) -removing edge Edge(525->537,w:6.0)(GAGCACTCTGAAC:W6(V525_D-1)->C:W-1(V537_D-1)) -Found potential edge: Edge(525->538,w:4.0) between GAGCACTCTGAAC:W6(V525_D-1) and C:W-1(V538_D-1) -removing vertex C:W-1(V538_D-1) was concatenated into GAGCACTCTGAACC:W6(V525_D-1) -Want to move edge Edge(538->539,w:6.0)(C:W-1(V538_D-1)->C:W-1(V539_D-1)) to (GAGCACTCTGAACC:W6(V525_D-1)->C:W-1(V539_D-1) - adding edge: GAGCACTCTGAACC:W6(V525_D-1) to C:W-1(V539_D-1) -removing edge Edge(538->539,w:6.0)(C:W-1(V538_D-1)->C:W-1(V539_D-1)) -removing edge Edge(525->538,w:4.0)(GAGCACTCTGAACC:W6(V525_D-1)->C:W-1(V538_D-1)) -Found potential edge: Edge(525->539,w:6.0) between GAGCACTCTGAACC:W6(V525_D-1) and C:W-1(V539_D-1) -removing vertex C:W-1(V539_D-1) was concatenated into GAGCACTCTGAACCC:W6(V525_D-1) -Want to move edge Edge(539->540,w:6.0)(C:W-1(V539_D-1)->T:W-1(V540_D-1)) to (GAGCACTCTGAACCC:W6(V525_D-1)->T:W-1(V540_D-1) - adding edge: GAGCACTCTGAACCC:W6(V525_D-1) to T:W-1(V540_D-1) -removing edge Edge(539->540,w:6.0)(C:W-1(V539_D-1)->T:W-1(V540_D-1)) -removing edge Edge(525->539,w:6.0)(GAGCACTCTGAACCC:W6(V525_D-1)->C:W-1(V539_D-1)) -Found potential edge: Edge(525->540,w:6.0) between GAGCACTCTGAACCC:W6(V525_D-1) and T:W-1(V540_D-1) -removing vertex T:W-1(V540_D-1) was concatenated into GAGCACTCTGAACCCT:W6(V525_D-1) -Want to move edge Edge(540->541,w:6.0)(T:W-1(V540_D-1)->G:W-1(V541_D-1)) to (GAGCACTCTGAACCCT:W6(V525_D-1)->G:W-1(V541_D-1) - adding edge: GAGCACTCTGAACCCT:W6(V525_D-1) to G:W-1(V541_D-1) -removing edge Edge(540->541,w:6.0)(T:W-1(V540_D-1)->G:W-1(V541_D-1)) -removing edge Edge(525->540,w:6.0)(GAGCACTCTGAACCCT:W6(V525_D-1)->T:W-1(V540_D-1)) -Found potential edge: Edge(525->541,w:6.0) between GAGCACTCTGAACCCT:W6(V525_D-1) and G:W-1(V541_D-1) -removing vertex G:W-1(V541_D-1) was concatenated into GAGCACTCTGAACCCTG:W6(V525_D-1) -Want to move edge Edge(541->542,w:6.0)(G:W-1(V541_D-1)->T:W-1(V542_D-1)) to (GAGCACTCTGAACCCTG:W6(V525_D-1)->T:W-1(V542_D-1) - adding edge: GAGCACTCTGAACCCTG:W6(V525_D-1) to T:W-1(V542_D-1) -removing edge Edge(541->542,w:6.0)(G:W-1(V541_D-1)->T:W-1(V542_D-1)) -removing edge Edge(525->541,w:6.0)(GAGCACTCTGAACCCTG:W6(V525_D-1)->G:W-1(V541_D-1)) -Found potential edge: Edge(525->542,w:6.0) between GAGCACTCTGAACCCTG:W6(V525_D-1) and T:W-1(V542_D-1) -removing vertex T:W-1(V542_D-1) was concatenated into GAGCACTCTGAACCCTGT:W6(V525_D-1) -Want to move edge Edge(542->543,w:6.0)(T:W-1(V542_D-1)->G:W-1(V543_D-1)) to (GAGCACTCTGAACCCTGT:W6(V525_D-1)->G:W-1(V543_D-1) - adding edge: GAGCACTCTGAACCCTGT:W6(V525_D-1) to G:W-1(V543_D-1) -removing edge Edge(542->543,w:6.0)(T:W-1(V542_D-1)->G:W-1(V543_D-1)) -removing edge Edge(525->542,w:6.0)(GAGCACTCTGAACCCTGT:W6(V525_D-1)->T:W-1(V542_D-1)) -Found potential edge: Edge(525->543,w:6.0) between GAGCACTCTGAACCCTGT:W6(V525_D-1) and G:W-1(V543_D-1) -removing vertex G:W-1(V543_D-1) was concatenated into GAGCACTCTGAACCCTGTG:W6(V525_D-1) -Want to move edge Edge(543->544,w:6.0)(G:W-1(V543_D-1)->A:W-1(V544_D-1)) to (GAGCACTCTGAACCCTGTG:W6(V525_D-1)->A:W-1(V544_D-1) - adding edge: GAGCACTCTGAACCCTGTG:W6(V525_D-1) to A:W-1(V544_D-1) -removing edge Edge(543->544,w:6.0)(G:W-1(V543_D-1)->A:W-1(V544_D-1)) -removing edge Edge(525->543,w:6.0)(GAGCACTCTGAACCCTGTG:W6(V525_D-1)->G:W-1(V543_D-1)) -Found potential edge: Edge(525->544,w:6.0) between GAGCACTCTGAACCCTGTG:W6(V525_D-1) and A:W-1(V544_D-1) -removing vertex A:W-1(V544_D-1) was concatenated into GAGCACTCTGAACCCTGTGA:W6(V525_D-1) -Want to move edge Edge(544->545,w:6.0)(A:W-1(V544_D-1)->G:W-1(V545_D-1)) to (GAGCACTCTGAACCCTGTGA:W6(V525_D-1)->G:W-1(V545_D-1) - adding edge: GAGCACTCTGAACCCTGTGA:W6(V525_D-1) to G:W-1(V545_D-1) -removing edge Edge(544->545,w:6.0)(A:W-1(V544_D-1)->G:W-1(V545_D-1)) -removing edge Edge(525->544,w:6.0)(GAGCACTCTGAACCCTGTGA:W6(V525_D-1)->A:W-1(V544_D-1)) -Found potential edge: Edge(525->545,w:6.0) between GAGCACTCTGAACCCTGTGA:W6(V525_D-1) and G:W-1(V545_D-1) -removing vertex G:W-1(V545_D-1) was concatenated into GAGCACTCTGAACCCTGTGAG:W6(V525_D-1) -Want to move edge Edge(545->546,w:6.0)(G:W-1(V545_D-1)->G:W-1(V546_D-1)) to (GAGCACTCTGAACCCTGTGAG:W6(V525_D-1)->G:W-1(V546_D-1) - adding edge: GAGCACTCTGAACCCTGTGAG:W6(V525_D-1) to G:W-1(V546_D-1) -removing edge Edge(545->546,w:6.0)(G:W-1(V545_D-1)->G:W-1(V546_D-1)) -removing edge Edge(525->545,w:6.0)(GAGCACTCTGAACCCTGTGAG:W6(V525_D-1)->G:W-1(V545_D-1)) -Found potential edge: Edge(525->546,w:6.0) between GAGCACTCTGAACCCTGTGAG:W6(V525_D-1) and G:W-1(V546_D-1) -removing vertex G:W-1(V546_D-1) was concatenated into GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1) -Want to move edge Edge(546->547,w:6.0)(G:W-1(V546_D-1)->C:W-1(V547_D-1)) to (GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1)->C:W-1(V547_D-1) - adding edge: GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1) to C:W-1(V547_D-1) -removing edge Edge(546->547,w:6.0)(G:W-1(V546_D-1)->C:W-1(V547_D-1)) -removing edge Edge(525->546,w:6.0)(GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1)->G:W-1(V546_D-1)) -Found potential edge: Edge(525->547,w:6.0) between GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1) and C:W-1(V547_D-1) -removing vertex C:W-1(V547_D-1) was concatenated into GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1) -Want to move edge Edge(547->548,w:6.0)(C:W-1(V547_D-1)->A:W-1(V548_D-1)) to (GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1)->A:W-1(V548_D-1) - adding edge: GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1) to A:W-1(V548_D-1) -removing edge Edge(547->548,w:6.0)(C:W-1(V547_D-1)->A:W-1(V548_D-1)) -removing edge Edge(525->547,w:6.0)(GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1)->C:W-1(V547_D-1)) -Found potential edge: Edge(525->548,w:6.0) between GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1) and A:W-1(V548_D-1) -removing vertex A:W-1(V548_D-1) was concatenated into GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) -Want to move edge Edge(548->549,w:6.0)(A:W-1(V548_D-1)->A:W-1(V549_D-1)) to (GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1)->A:W-1(V549_D-1) - adding edge: GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) to A:W-1(V549_D-1) -removing edge Edge(548->549,w:6.0)(A:W-1(V548_D-1)->A:W-1(V549_D-1)) -removing edge Edge(525->548,w:6.0)(GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1)->A:W-1(V548_D-1)) -Found potential edge: Edge(549->550,w:8.0) between A:W-1(V549_D-1) and G:W-1(V550_D-1) -removing vertex G:W-1(V550_D-1) was concatenated into AG:W8(V549_D-1) -Want to move edge Edge(550->551,w:8.0)(G:W-1(V550_D-1)->T:W-1(V551_D-1)) to (AG:W8(V549_D-1)->T:W-1(V551_D-1) - adding edge: AG:W8(V549_D-1) to T:W-1(V551_D-1) -removing edge Edge(550->551,w:8.0)(G:W-1(V550_D-1)->T:W-1(V551_D-1)) -removing edge Edge(549->550,w:8.0)(AG:W8(V549_D-1)->G:W-1(V550_D-1)) -Found potential edge: Edge(549->551,w:8.0) between AG:W8(V549_D-1) and T:W-1(V551_D-1) -removing vertex T:W-1(V551_D-1) was concatenated into AGT:W8(V549_D-1) -Want to move edge Edge(551->552,w:8.0)(T:W-1(V551_D-1)->C:W-1(V552_D-1)) to (AGT:W8(V549_D-1)->C:W-1(V552_D-1) - adding edge: AGT:W8(V549_D-1) to C:W-1(V552_D-1) -removing edge Edge(551->552,w:8.0)(T:W-1(V551_D-1)->C:W-1(V552_D-1)) -removing edge Edge(549->551,w:8.0)(AGT:W8(V549_D-1)->T:W-1(V551_D-1)) -Found potential edge: Edge(549->552,w:8.0) between AGT:W8(V549_D-1) and C:W-1(V552_D-1) -removing vertex C:W-1(V552_D-1) was concatenated into AGTC:W8(V549_D-1) -Want to move edge Edge(552->553,w:8.0)(C:W-1(V552_D-1)->C:W-1(V553_D-1)) to (AGTC:W8(V549_D-1)->C:W-1(V553_D-1) - adding edge: AGTC:W8(V549_D-1) to C:W-1(V553_D-1) -removing edge Edge(552->553,w:8.0)(C:W-1(V552_D-1)->C:W-1(V553_D-1)) -removing edge Edge(549->552,w:8.0)(AGTC:W8(V549_D-1)->C:W-1(V552_D-1)) -Found potential edge: Edge(549->553,w:8.0) between AGTC:W8(V549_D-1) and C:W-1(V553_D-1) -removing vertex C:W-1(V553_D-1) was concatenated into AGTCC:W8(V549_D-1) -Want to move edge Edge(553->554,w:8.0)(C:W-1(V553_D-1)->A:W-1(V554_D-1)) to (AGTCC:W8(V549_D-1)->A:W-1(V554_D-1) - adding edge: AGTCC:W8(V549_D-1) to A:W-1(V554_D-1) -removing edge Edge(553->554,w:8.0)(C:W-1(V553_D-1)->A:W-1(V554_D-1)) -removing edge Edge(549->553,w:8.0)(AGTCC:W8(V549_D-1)->C:W-1(V553_D-1)) -Found potential edge: Edge(549->554,w:8.0) between AGTCC:W8(V549_D-1) and A:W-1(V554_D-1) -removing vertex A:W-1(V554_D-1) was concatenated into AGTCCA:W8(V549_D-1) -Want to move edge Edge(554->555,w:6.0)(A:W-1(V554_D-1)->C:W-1(V555_D-1)) to (AGTCCA:W8(V549_D-1)->C:W-1(V555_D-1) - adding edge: AGTCCA:W8(V549_D-1) to C:W-1(V555_D-1) -removing edge Edge(554->555,w:6.0)(A:W-1(V554_D-1)->C:W-1(V555_D-1)) -removing edge Edge(549->554,w:8.0)(AGTCCA:W8(V549_D-1)->A:W-1(V554_D-1)) -Found potential edge: Edge(549->555,w:6.0) between AGTCCA:W8(V549_D-1) and C:W-1(V555_D-1) -removing vertex C:W-1(V555_D-1) was concatenated into AGTCCAC:W8(V549_D-1) -Want to move edge Edge(555->556,w:6.0)(C:W-1(V555_D-1)->C:W-1(V556_D-1)) to (AGTCCAC:W8(V549_D-1)->C:W-1(V556_D-1) - adding edge: AGTCCAC:W8(V549_D-1) to C:W-1(V556_D-1) -removing edge Edge(555->556,w:6.0)(C:W-1(V555_D-1)->C:W-1(V556_D-1)) -removing edge Edge(549->555,w:6.0)(AGTCCAC:W8(V549_D-1)->C:W-1(V555_D-1)) -Found potential edge: Edge(549->556,w:6.0) between AGTCCAC:W8(V549_D-1) and C:W-1(V556_D-1) -removing vertex C:W-1(V556_D-1) was concatenated into AGTCCACC:W7(V549_D-1) -Want to move edge Edge(556->557,w:4.0)(C:W-1(V556_D-1)->A:W-1(V557_D-1)) to (AGTCCACC:W7(V549_D-1)->A:W-1(V557_D-1) - adding edge: AGTCCACC:W7(V549_D-1) to A:W-1(V557_D-1) -removing edge Edge(556->557,w:4.0)(C:W-1(V556_D-1)->A:W-1(V557_D-1)) -removing edge Edge(549->556,w:6.0)(AGTCCACC:W7(V549_D-1)->C:W-1(V556_D-1)) -Found potential edge: Edge(549->557,w:4.0) between AGTCCACC:W7(V549_D-1) and A:W-1(V557_D-1) -removing vertex A:W-1(V557_D-1) was concatenated into AGTCCACCA:W7(V549_D-1) -Want to move edge Edge(557->558,w:4.0)(A:W-1(V557_D-1)->C:W-1(V558_D-1)) to (AGTCCACCA:W7(V549_D-1)->C:W-1(V558_D-1) - adding edge: AGTCCACCA:W7(V549_D-1) to C:W-1(V558_D-1) -removing edge Edge(557->558,w:4.0)(A:W-1(V557_D-1)->C:W-1(V558_D-1)) -removing edge Edge(549->557,w:4.0)(AGTCCACCA:W7(V549_D-1)->A:W-1(V557_D-1)) -Found potential edge: Edge(549->558,w:4.0) between AGTCCACCA:W7(V549_D-1) and C:W-1(V558_D-1) -removing vertex C:W-1(V558_D-1) was concatenated into AGTCCACCAC:W7(V549_D-1) -Want to move edge Edge(558->559,w:4.0)(C:W-1(V558_D-1)->C:W-1(V559_D-1)) to (AGTCCACCAC:W7(V549_D-1)->C:W-1(V559_D-1) - adding edge: AGTCCACCAC:W7(V549_D-1) to C:W-1(V559_D-1) -removing edge Edge(558->559,w:4.0)(C:W-1(V558_D-1)->C:W-1(V559_D-1)) -removing edge Edge(549->558,w:4.0)(AGTCCACCAC:W7(V549_D-1)->C:W-1(V558_D-1)) -Found potential edge: Edge(549->559,w:4.0) between AGTCCACCAC:W7(V549_D-1) and C:W-1(V559_D-1) -removing vertex C:W-1(V559_D-1) was concatenated into AGTCCACCACC:W6(V549_D-1) -Want to move edge Edge(559->560,w:2.0)(C:W-1(V559_D-1)->A:W-1(V560_D-1)) to (AGTCCACCACC:W6(V549_D-1)->A:W-1(V560_D-1) - adding edge: AGTCCACCACC:W6(V549_D-1) to A:W-1(V560_D-1) -removing edge Edge(559->560,w:2.0)(C:W-1(V559_D-1)->A:W-1(V560_D-1)) -removing edge Edge(549->559,w:4.0)(AGTCCACCACC:W6(V549_D-1)->C:W-1(V559_D-1)) -Found potential edge: Edge(549->560,w:2.0) between AGTCCACCACC:W6(V549_D-1) and A:W-1(V560_D-1) -removing vertex A:W-1(V560_D-1) was concatenated into AGTCCACCACCA:W6(V549_D-1) -Want to move edge Edge(560->561,w:2.0)(A:W-1(V560_D-1)->G:W-1(V561_D-1)) to (AGTCCACCACCA:W6(V549_D-1)->G:W-1(V561_D-1) - adding edge: AGTCCACCACCA:W6(V549_D-1) to G:W-1(V561_D-1) -removing edge Edge(560->561,w:2.0)(A:W-1(V560_D-1)->G:W-1(V561_D-1)) -removing edge Edge(549->560,w:2.0)(AGTCCACCACCA:W6(V549_D-1)->A:W-1(V560_D-1)) -Found potential edge: Edge(549->561,w:2.0) between AGTCCACCACCA:W6(V549_D-1) and G:W-1(V561_D-1) -removing vertex G:W-1(V561_D-1) was concatenated into AGTCCACCACCAG:W6(V549_D-1) -Want to move edge Edge(561->562,w:2.0)(G:W-1(V561_D-1)->C:W-1(V562_D-1)) to (AGTCCACCACCAG:W6(V549_D-1)->C:W-1(V562_D-1) - adding edge: AGTCCACCACCAG:W6(V549_D-1) to C:W-1(V562_D-1) -removing edge Edge(561->562,w:2.0)(G:W-1(V561_D-1)->C:W-1(V562_D-1)) -removing edge Edge(549->561,w:2.0)(AGTCCACCACCAG:W6(V549_D-1)->G:W-1(V561_D-1)) -Found potential edge: Edge(549->562,w:2.0) between AGTCCACCACCAG:W6(V549_D-1) and C:W-1(V562_D-1) -removing vertex C:W-1(V562_D-1) was concatenated into AGTCCACCACCAGC:W5(V549_D-1) -Want to move edge Edge(562->563,w:2.0)(C:W-1(V562_D-1)->G:W-1(V563_D-1)) to (AGTCCACCACCAGC:W5(V549_D-1)->G:W-1(V563_D-1) - adding edge: AGTCCACCACCAGC:W5(V549_D-1) to G:W-1(V563_D-1) -removing edge Edge(562->563,w:2.0)(C:W-1(V562_D-1)->G:W-1(V563_D-1)) -removing edge Edge(549->562,w:2.0)(AGTCCACCACCAGC:W5(V549_D-1)->C:W-1(V562_D-1)) -Found potential edge: Edge(549->563,w:2.0) between AGTCCACCACCAGC:W5(V549_D-1) and G:W-1(V563_D-1) -removing vertex G:W-1(V563_D-1) was concatenated into AGTCCACCACCAGCG:W5(V549_D-1) -Want to move edge Edge(563->564,w:2.0)(G:W-1(V563_D-1)->T:W-1(V564_D-1)) to (AGTCCACCACCAGCG:W5(V549_D-1)->T:W-1(V564_D-1) - adding edge: AGTCCACCACCAGCG:W5(V549_D-1) to T:W-1(V564_D-1) -removing edge Edge(563->564,w:2.0)(G:W-1(V563_D-1)->T:W-1(V564_D-1)) -removing edge Edge(549->563,w:2.0)(AGTCCACCACCAGCG:W5(V549_D-1)->G:W-1(V563_D-1)) -Found potential edge: Edge(549->564,w:2.0) between AGTCCACCACCAGCG:W5(V549_D-1) and T:W-1(V564_D-1) -removing vertex T:W-1(V564_D-1) was concatenated into AGTCCACCACCAGCGT:W5(V549_D-1) -Want to move edge Edge(564->565,w:2.0)(T:W-1(V564_D-1)->A:W-1(V565_D-1)) to (AGTCCACCACCAGCGT:W5(V549_D-1)->A:W-1(V565_D-1) - adding edge: AGTCCACCACCAGCGT:W5(V549_D-1) to A:W-1(V565_D-1) -removing edge Edge(564->565,w:2.0)(T:W-1(V564_D-1)->A:W-1(V565_D-1)) -removing edge Edge(549->564,w:2.0)(AGTCCACCACCAGCGT:W5(V549_D-1)->T:W-1(V564_D-1)) -Found potential edge: Edge(549->565,w:2.0) between AGTCCACCACCAGCGT:W5(V549_D-1) and A:W-1(V565_D-1) -removing vertex A:W-1(V565_D-1) was concatenated into AGTCCACCACCAGCGTA:W5(V549_D-1) -Want to move edge Edge(565->566,w:2.0)(A:W-1(V565_D-1)->T:W-1(V566_D-1)) to (AGTCCACCACCAGCGTA:W5(V549_D-1)->T:W-1(V566_D-1) - adding edge: AGTCCACCACCAGCGTA:W5(V549_D-1) to T:W-1(V566_D-1) -removing edge Edge(565->566,w:2.0)(A:W-1(V565_D-1)->T:W-1(V566_D-1)) -removing edge Edge(549->565,w:2.0)(AGTCCACCACCAGCGTA:W5(V549_D-1)->A:W-1(V565_D-1)) -Found potential edge: Edge(549->566,w:2.0) between AGTCCACCACCAGCGTA:W5(V549_D-1) and T:W-1(V566_D-1) -removing vertex T:W-1(V566_D-1) was concatenated into AGTCCACCACCAGCGTAT:W5(V549_D-1) -Want to move edge Edge(566->567,w:2.0)(T:W-1(V566_D-1)->C:W-1(V567_D-1)) to (AGTCCACCACCAGCGTAT:W5(V549_D-1)->C:W-1(V567_D-1) - adding edge: AGTCCACCACCAGCGTAT:W5(V549_D-1) to C:W-1(V567_D-1) -removing edge Edge(566->567,w:2.0)(T:W-1(V566_D-1)->C:W-1(V567_D-1)) -removing edge Edge(549->566,w:2.0)(AGTCCACCACCAGCGTAT:W5(V549_D-1)->T:W-1(V566_D-1)) -Found potential edge: Edge(549->567,w:2.0) between AGTCCACCACCAGCGTAT:W5(V549_D-1) and C:W-1(V567_D-1) -removing vertex C:W-1(V567_D-1) was concatenated into AGTCCACCACCAGCGTATC:W4(V549_D-1) -Want to move edge Edge(567->568,w:4.0)(C:W-1(V567_D-1)->T:W-1(V568_D-1)) to (AGTCCACCACCAGCGTATC:W4(V549_D-1)->T:W-1(V568_D-1) - adding edge: AGTCCACCACCAGCGTATC:W4(V549_D-1) to T:W-1(V568_D-1) -removing edge Edge(567->568,w:4.0)(C:W-1(V567_D-1)->T:W-1(V568_D-1)) -removing edge Edge(549->567,w:2.0)(AGTCCACCACCAGCGTATC:W4(V549_D-1)->C:W-1(V567_D-1)) -Found potential edge: Edge(549->568,w:4.0) between AGTCCACCACCAGCGTATC:W4(V549_D-1) and T:W-1(V568_D-1) -removing vertex T:W-1(V568_D-1) was concatenated into AGTCCACCACCAGCGTATCT:W4(V549_D-1) -Want to move edge Edge(568->569,w:4.0)(T:W-1(V568_D-1)->A:W-1(V569_D-1)) to (AGTCCACCACCAGCGTATCT:W4(V549_D-1)->A:W-1(V569_D-1) - adding edge: AGTCCACCACCAGCGTATCT:W4(V549_D-1) to A:W-1(V569_D-1) -removing edge Edge(568->569,w:4.0)(T:W-1(V568_D-1)->A:W-1(V569_D-1)) -removing edge Edge(549->568,w:4.0)(AGTCCACCACCAGCGTATCT:W4(V549_D-1)->T:W-1(V568_D-1)) -Found potential edge: Edge(549->569,w:4.0) between AGTCCACCACCAGCGTATCT:W4(V549_D-1) and A:W-1(V569_D-1) -removing vertex A:W-1(V569_D-1) was concatenated into AGTCCACCACCAGCGTATCTA:W4(V549_D-1) -Want to move edge Edge(569->570,w:4.0)(A:W-1(V569_D-1)->G:W-1(V570_D-1)) to (AGTCCACCACCAGCGTATCTA:W4(V549_D-1)->G:W-1(V570_D-1) - adding edge: AGTCCACCACCAGCGTATCTA:W4(V549_D-1) to G:W-1(V570_D-1) -removing edge Edge(569->570,w:4.0)(A:W-1(V569_D-1)->G:W-1(V570_D-1)) -removing edge Edge(549->569,w:4.0)(AGTCCACCACCAGCGTATCTA:W4(V549_D-1)->A:W-1(V569_D-1)) -Found potential edge: Edge(549->570,w:4.0) between AGTCCACCACCAGCGTATCTA:W4(V549_D-1) and G:W-1(V570_D-1) -removing vertex G:W-1(V570_D-1) was concatenated into AGTCCACCACCAGCGTATCTAG:W4(V549_D-1) -Want to move edge Edge(570->571,w:4.0)(G:W-1(V570_D-1)->A:W-1(V571_D-1)) to (AGTCCACCACCAGCGTATCTAG:W4(V549_D-1)->A:W-1(V571_D-1) - adding edge: AGTCCACCACCAGCGTATCTAG:W4(V549_D-1) to A:W-1(V571_D-1) -removing edge Edge(570->571,w:4.0)(G:W-1(V570_D-1)->A:W-1(V571_D-1)) -removing edge Edge(549->570,w:4.0)(AGTCCACCACCAGCGTATCTAG:W4(V549_D-1)->G:W-1(V570_D-1)) -Found potential edge: Edge(549->571,w:4.0) between AGTCCACCACCAGCGTATCTAG:W4(V549_D-1) and A:W-1(V571_D-1) -removing vertex A:W-1(V571_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1) -Want to move edge Edge(571->572,w:4.0)(A:W-1(V571_D-1)->C:W-1(V572_D-1)) to (AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1)->C:W-1(V572_D-1) - adding edge: AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1) to C:W-1(V572_D-1) -removing edge Edge(571->572,w:4.0)(A:W-1(V571_D-1)->C:W-1(V572_D-1)) -removing edge Edge(549->571,w:4.0)(AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1)->A:W-1(V571_D-1)) -Found potential edge: Edge(549->572,w:4.0) between AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1) and C:W-1(V572_D-1) -removing vertex C:W-1(V572_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1) -Want to move edge Edge(572->573,w:4.0)(C:W-1(V572_D-1)->C:W-1(V573_D-1)) to (AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1)->C:W-1(V573_D-1) - adding edge: AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1) to C:W-1(V573_D-1) -removing edge Edge(572->573,w:4.0)(C:W-1(V572_D-1)->C:W-1(V573_D-1)) -removing edge Edge(549->572,w:4.0)(AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1)->C:W-1(V572_D-1)) -Found potential edge: Edge(549->573,w:4.0) between AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1) and C:W-1(V573_D-1) -removing vertex C:W-1(V573_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1) -Want to move edge Edge(573->574,w:4.0)(C:W-1(V573_D-1)->C:W-1(V574_D-1)) to (AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1)->C:W-1(V574_D-1) - adding edge: AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1) to C:W-1(V574_D-1) -removing edge Edge(573->574,w:4.0)(C:W-1(V573_D-1)->C:W-1(V574_D-1)) -removing edge Edge(549->573,w:4.0)(AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1)->C:W-1(V573_D-1)) -Found potential edge: Edge(549->574,w:4.0) between AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1) and C:W-1(V574_D-1) -removing vertex C:W-1(V574_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1) -Want to move edge Edge(574->575,w:4.0)(C:W-1(V574_D-1)->A:W-1(V575_D-1)) to (AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1)->A:W-1(V575_D-1) - adding edge: AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1) to A:W-1(V575_D-1) -removing edge Edge(574->575,w:4.0)(C:W-1(V574_D-1)->A:W-1(V575_D-1)) -removing edge Edge(549->574,w:4.0)(AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1)->C:W-1(V574_D-1)) -Found potential edge: Edge(549->575,w:4.0) between AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1) and A:W-1(V575_D-1) -removing vertex A:W-1(V575_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1) -Want to move edge Edge(575->576,w:4.0)(A:W-1(V575_D-1)->G:W-1(V576_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1)->G:W-1(V576_D-1) - adding edge: AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1) to G:W-1(V576_D-1) -removing edge Edge(575->576,w:4.0)(A:W-1(V575_D-1)->G:W-1(V576_D-1)) -removing edge Edge(549->575,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1)->A:W-1(V575_D-1)) -Found potential edge: Edge(549->576,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1) and G:W-1(V576_D-1) -removing vertex G:W-1(V576_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1) -Want to move edge Edge(576->577,w:4.0)(G:W-1(V576_D-1)->G:W-1(V577_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1)->G:W-1(V577_D-1) - adding edge: AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1) to G:W-1(V577_D-1) -removing edge Edge(576->577,w:4.0)(G:W-1(V576_D-1)->G:W-1(V577_D-1)) -removing edge Edge(549->576,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1)->G:W-1(V576_D-1)) -Found potential edge: Edge(549->577,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1) and G:W-1(V577_D-1) -removing vertex G:W-1(V577_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1) -Want to move edge Edge(577->578,w:4.0)(G:W-1(V577_D-1)->C:W-1(V578_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1)->C:W-1(V578_D-1) - adding edge: AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1) to C:W-1(V578_D-1) -removing edge Edge(577->578,w:4.0)(G:W-1(V577_D-1)->C:W-1(V578_D-1)) -removing edge Edge(549->577,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1)->G:W-1(V577_D-1)) -Found potential edge: Edge(549->578,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1) and C:W-1(V578_D-1) -removing vertex C:W-1(V578_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1) -Want to move edge Edge(578->579,w:4.0)(C:W-1(V578_D-1)->C:W-1(V579_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1)->C:W-1(V579_D-1) - adding edge: AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1) to C:W-1(V579_D-1) -removing edge Edge(578->579,w:4.0)(C:W-1(V578_D-1)->C:W-1(V579_D-1)) -removing edge Edge(549->578,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1)->C:W-1(V578_D-1)) -Found potential edge: Edge(549->579,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1) and C:W-1(V579_D-1) -removing vertex C:W-1(V579_D-1) was concatenated into AGTCCACCAC...GACCCAGGCC:W4(V549_D-1) -Want to move edge Edge(579->580,w:4.0)(C:W-1(V579_D-1)->A:W-1(V580_D-1)) to (AGTCCACCAC...GACCCAGGCC:W4(V549_D-1)->A:W-1(V580_D-1) - adding edge: AGTCCACCAC...GACCCAGGCC:W4(V549_D-1) to A:W-1(V580_D-1) -removing edge Edge(579->580,w:4.0)(C:W-1(V579_D-1)->A:W-1(V580_D-1)) -removing edge Edge(549->579,w:4.0)(AGTCCACCAC...GACCCAGGCC:W4(V549_D-1)->C:W-1(V579_D-1)) -Found potential edge: Edge(549->580,w:4.0) between AGTCCACCAC...GACCCAGGCC:W4(V549_D-1) and A:W-1(V580_D-1) -removing vertex A:W-1(V580_D-1) was concatenated into AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1) -Want to move edge Edge(580->581,w:4.0)(A:W-1(V580_D-1)->T:W-1(V581_D-1)) to (AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1)->T:W-1(V581_D-1) - adding edge: AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1) to T:W-1(V581_D-1) -removing edge Edge(580->581,w:4.0)(A:W-1(V580_D-1)->T:W-1(V581_D-1)) -removing edge Edge(549->580,w:4.0)(AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1)->A:W-1(V580_D-1)) -Found potential edge: Edge(549->581,w:4.0) between AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1) and T:W-1(V581_D-1) -removing vertex T:W-1(V581_D-1) was concatenated into AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1) -Want to move edge Edge(581->582,w:4.0)(T:W-1(V581_D-1)->C:W-1(V582_D-1)) to (AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1)->C:W-1(V582_D-1) - adding edge: AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1) to C:W-1(V582_D-1) -removing edge Edge(581->582,w:4.0)(T:W-1(V581_D-1)->C:W-1(V582_D-1)) -removing edge Edge(549->581,w:4.0)(AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1)->T:W-1(V581_D-1)) -Found potential edge: Edge(549->582,w:4.0) between AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1) and C:W-1(V582_D-1) -removing vertex C:W-1(V582_D-1) was concatenated into AGTCCACCAC...CCAGGCCATC:W4(V549_D-1) -Want to move edge Edge(582->583,w:4.0)(C:W-1(V582_D-1)->T:W-1(V583_D-1)) to (AGTCCACCAC...CCAGGCCATC:W4(V549_D-1)->T:W-1(V583_D-1) - adding edge: AGTCCACCAC...CCAGGCCATC:W4(V549_D-1) to T:W-1(V583_D-1) -removing edge Edge(582->583,w:4.0)(C:W-1(V582_D-1)->T:W-1(V583_D-1)) -removing edge Edge(549->582,w:4.0)(AGTCCACCAC...CCAGGCCATC:W4(V549_D-1)->C:W-1(V582_D-1)) -Found potential edge: Edge(549->583,w:4.0) between AGTCCACCAC...CCAGGCCATC:W4(V549_D-1) and T:W-1(V583_D-1) -removing vertex T:W-1(V583_D-1) was concatenated into AGTCCACCAC...CAGGCCATCT:W4(V549_D-1) -Want to move edge Edge(583->584,w:4.0)(T:W-1(V583_D-1)->A:W-1(V584_D-1)) to (AGTCCACCAC...CAGGCCATCT:W4(V549_D-1)->A:W-1(V584_D-1) - adding edge: AGTCCACCAC...CAGGCCATCT:W4(V549_D-1) to A:W-1(V584_D-1) -removing edge Edge(583->584,w:4.0)(T:W-1(V583_D-1)->A:W-1(V584_D-1)) -removing edge Edge(549->583,w:4.0)(AGTCCACCAC...CAGGCCATCT:W4(V549_D-1)->T:W-1(V583_D-1)) -Found potential edge: Edge(549->584,w:4.0) between AGTCCACCAC...CAGGCCATCT:W4(V549_D-1) and A:W-1(V584_D-1) -removing vertex A:W-1(V584_D-1) was concatenated into AGTCCACCAC...AGGCCATCTA:W4(V549_D-1) -Want to move edge Edge(584->585,w:4.0)(A:W-1(V584_D-1)->A:W-1(V585_D-1)) to (AGTCCACCAC...AGGCCATCTA:W4(V549_D-1)->A:W-1(V585_D-1) - adding edge: AGTCCACCAC...AGGCCATCTA:W4(V549_D-1) to A:W-1(V585_D-1) -removing edge Edge(584->585,w:4.0)(A:W-1(V584_D-1)->A:W-1(V585_D-1)) -removing edge Edge(549->584,w:4.0)(AGTCCACCAC...AGGCCATCTA:W4(V549_D-1)->A:W-1(V584_D-1)) -Found potential edge: Edge(549->585,w:4.0) between AGTCCACCAC...AGGCCATCTA:W4(V549_D-1) and A:W-1(V585_D-1) -removing vertex A:W-1(V585_D-1) was concatenated into AGTCCACCAC...GGCCATCTAA:W4(V549_D-1) -Want to move edge Edge(585->586,w:4.0)(A:W-1(V585_D-1)->T:W-1(V586_D-1)) to (AGTCCACCAC...GGCCATCTAA:W4(V549_D-1)->T:W-1(V586_D-1) - adding edge: AGTCCACCAC...GGCCATCTAA:W4(V549_D-1) to T:W-1(V586_D-1) -removing edge Edge(585->586,w:4.0)(A:W-1(V585_D-1)->T:W-1(V586_D-1)) -removing edge Edge(549->585,w:4.0)(AGTCCACCAC...GGCCATCTAA:W4(V549_D-1)->A:W-1(V585_D-1)) -Found potential edge: Edge(549->586,w:4.0) between AGTCCACCAC...GGCCATCTAA:W4(V549_D-1) and T:W-1(V586_D-1) -removing vertex T:W-1(V586_D-1) was concatenated into AGTCCACCAC...GCCATCTAAT:W4(V549_D-1) -Want to move edge Edge(586->587,w:4.0)(T:W-1(V586_D-1)->A:W-1(V587_D-1)) to (AGTCCACCAC...GCCATCTAAT:W4(V549_D-1)->A:W-1(V587_D-1) - adding edge: AGTCCACCAC...GCCATCTAAT:W4(V549_D-1) to A:W-1(V587_D-1) -removing edge Edge(586->587,w:4.0)(T:W-1(V586_D-1)->A:W-1(V587_D-1)) -removing edge Edge(549->586,w:4.0)(AGTCCACCAC...GCCATCTAAT:W4(V549_D-1)->T:W-1(V586_D-1)) -Found potential edge: Edge(549->587,w:4.0) between AGTCCACCAC...GCCATCTAAT:W4(V549_D-1) and A:W-1(V587_D-1) -removing vertex A:W-1(V587_D-1) was concatenated into AGTCCACCAC...CCATCTAATA:W4(V549_D-1) -Want to move edge Edge(587->588,w:4.0)(A:W-1(V587_D-1)->A:W-1(V588_D-1)) to (AGTCCACCAC...CCATCTAATA:W4(V549_D-1)->A:W-1(V588_D-1) - adding edge: AGTCCACCAC...CCATCTAATA:W4(V549_D-1) to A:W-1(V588_D-1) -removing edge Edge(587->588,w:4.0)(A:W-1(V587_D-1)->A:W-1(V588_D-1)) -removing edge Edge(549->587,w:4.0)(AGTCCACCAC...CCATCTAATA:W4(V549_D-1)->A:W-1(V587_D-1)) -Found potential edge: Edge(549->588,w:4.0) between AGTCCACCAC...CCATCTAATA:W4(V549_D-1) and A:W-1(V588_D-1) -removing vertex A:W-1(V588_D-1) was concatenated into AGTCCACCAC...CATCTAATAA:W4(V549_D-1) -Want to move edge Edge(588->589,w:4.0)(A:W-1(V588_D-1)->A:W-1(V589_D-1)) to (AGTCCACCAC...CATCTAATAA:W4(V549_D-1)->A:W-1(V589_D-1) - adding edge: AGTCCACCAC...CATCTAATAA:W4(V549_D-1) to A:W-1(V589_D-1) -removing edge Edge(588->589,w:4.0)(A:W-1(V588_D-1)->A:W-1(V589_D-1)) -removing edge Edge(549->588,w:4.0)(AGTCCACCAC...CATCTAATAA:W4(V549_D-1)->A:W-1(V588_D-1)) -Found potential edge: Edge(549->589,w:4.0) between AGTCCACCAC...CATCTAATAA:W4(V549_D-1) and A:W-1(V589_D-1) -removing vertex A:W-1(V589_D-1) was concatenated into AGTCCACCAC...ATCTAATAAA:W4(V549_D-1) -Want to move edge Edge(589->590,w:4.0)(A:W-1(V589_D-1)->G:W-1(V590_D-1)) to (AGTCCACCAC...ATCTAATAAA:W4(V549_D-1)->G:W-1(V590_D-1) - adding edge: AGTCCACCAC...ATCTAATAAA:W4(V549_D-1) to G:W-1(V590_D-1) -removing edge Edge(589->590,w:4.0)(A:W-1(V589_D-1)->G:W-1(V590_D-1)) -removing edge Edge(549->589,w:4.0)(AGTCCACCAC...ATCTAATAAA:W4(V549_D-1)->A:W-1(V589_D-1)) -Found potential edge: Edge(549->590,w:4.0) between AGTCCACCAC...ATCTAATAAA:W4(V549_D-1) and G:W-1(V590_D-1) -removing vertex G:W-1(V590_D-1) was concatenated into AGTCCACCAC...TCTAATAAAG:W4(V549_D-1) -Want to move edge Edge(590->591,w:2.0)(G:W-1(V590_D-1)->G:W-1(V591_D-1)) to (AGTCCACCAC...TCTAATAAAG:W4(V549_D-1)->G:W-1(V591_D-1) - adding edge: AGTCCACCAC...TCTAATAAAG:W4(V549_D-1) to G:W-1(V591_D-1) -removing edge Edge(590->591,w:2.0)(G:W-1(V590_D-1)->G:W-1(V591_D-1)) -removing edge Edge(549->590,w:4.0)(AGTCCACCAC...TCTAATAAAG:W4(V549_D-1)->G:W-1(V590_D-1)) -Found potential edge: Edge(549->591,w:2.0) between AGTCCACCAC...TCTAATAAAG:W4(V549_D-1) and G:W-1(V591_D-1) -removing vertex G:W-1(V591_D-1) was concatenated into AGTCCACCAC...CTAATAAAGG:W4(V549_D-1) -Want to move edge Edge(591->592,w:2.0)(G:W-1(V591_D-1)->A:W-1(V592_D-1)) to (AGTCCACCAC...CTAATAAAGG:W4(V549_D-1)->A:W-1(V592_D-1) - adding edge: AGTCCACCAC...CTAATAAAGG:W4(V549_D-1) to A:W-1(V592_D-1) -removing edge Edge(591->592,w:2.0)(G:W-1(V591_D-1)->A:W-1(V592_D-1)) -removing edge Edge(549->591,w:2.0)(AGTCCACCAC...CTAATAAAGG:W4(V549_D-1)->G:W-1(V591_D-1)) -Found potential edge: Edge(549->592,w:2.0) between AGTCCACCAC...CTAATAAAGG:W4(V549_D-1) and A:W-1(V592_D-1) -removing vertex A:W-1(V592_D-1) was concatenated into AGTCCACCAC...TAATAAAGGA:W4(V549_D-1) -Want to move edge Edge(592->593,w:2.0)(A:W-1(V592_D-1)->A:W-1(V593_D-1)) to (AGTCCACCAC...TAATAAAGGA:W4(V549_D-1)->A:W-1(V593_D-1) - adding edge: AGTCCACCAC...TAATAAAGGA:W4(V549_D-1) to A:W-1(V593_D-1) -removing edge Edge(592->593,w:2.0)(A:W-1(V592_D-1)->A:W-1(V593_D-1)) -removing edge Edge(549->592,w:2.0)(AGTCCACCAC...TAATAAAGGA:W4(V549_D-1)->A:W-1(V592_D-1)) -Found potential edge: Edge(549->593,w:2.0) between AGTCCACCAC...TAATAAAGGA:W4(V549_D-1) and A:W-1(V593_D-1) -removing vertex A:W-1(V593_D-1) was concatenated into AGTCCACCAC...AATAAAGGAA:W4(V549_D-1) -Want to move edge Edge(593->594,w:2.0)(A:W-1(V593_D-1)->A:W-1(V594_D-1)) to (AGTCCACCAC...AATAAAGGAA:W4(V549_D-1)->A:W-1(V594_D-1) - adding edge: AGTCCACCAC...AATAAAGGAA:W4(V549_D-1) to A:W-1(V594_D-1) -removing edge Edge(593->594,w:2.0)(A:W-1(V593_D-1)->A:W-1(V594_D-1)) -removing edge Edge(549->593,w:2.0)(AGTCCACCAC...AATAAAGGAA:W4(V549_D-1)->A:W-1(V593_D-1)) -Found potential edge: Edge(549->594,w:2.0) between AGTCCACCAC...AATAAAGGAA:W4(V549_D-1) and A:W-1(V594_D-1) -removing vertex A:W-1(V594_D-1) was concatenated into AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1) -Want to move edge Edge(594->595,w:2.0)(A:W-1(V594_D-1)->A:W-1(V595_D-1)) to (AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1)->A:W-1(V595_D-1) - adding edge: AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1) to A:W-1(V595_D-1) -removing edge Edge(594->595,w:2.0)(A:W-1(V594_D-1)->A:W-1(V595_D-1)) -removing edge Edge(549->594,w:2.0)(AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1)->A:W-1(V594_D-1)) -Found potential edge: Edge(549->595,w:2.0) between AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1) and A:W-1(V595_D-1) -removing vertex A:W-1(V595_D-1) was concatenated into AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1) -Want to move edge Edge(595->596,w:2.0)(A:W-1(V595_D-1)->C:W-1(V596_D-1)) to (AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1)->C:W-1(V596_D-1) - adding edge: AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1) to C:W-1(V596_D-1) -removing edge Edge(595->596,w:2.0)(A:W-1(V595_D-1)->C:W-1(V596_D-1)) -removing edge Edge(549->595,w:2.0)(AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1)->A:W-1(V595_D-1)) -Found potential edge: Edge(549->596,w:2.0) between AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1) and C:W-1(V596_D-1) -removing vertex C:W-1(V596_D-1) was concatenated into AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1) -Want to move edge Edge(596->597,w:2.0)(C:W-1(V596_D-1)->T:W-1(V597_D-1)) to (AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1)->T:W-1(V597_D-1) - adding edge: AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1) to T:W-1(V597_D-1) -removing edge Edge(596->597,w:2.0)(C:W-1(V596_D-1)->T:W-1(V597_D-1)) -removing edge Edge(549->596,w:2.0)(AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1)->C:W-1(V596_D-1)) -Found potential edge: Edge(549->597,w:2.0) between AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1) and T:W-1(V597_D-1) -removing vertex T:W-1(V597_D-1) was concatenated into AGTCCACCAC...AAGGAAAACT:W4(V549_D-1) -Want to move edge Edge(597->598,w:2.0)(T:W-1(V597_D-1)->G:W-1(V598_D-1)) to (AGTCCACCAC...AAGGAAAACT:W4(V549_D-1)->G:W-1(V598_D-1) - adding edge: AGTCCACCAC...AAGGAAAACT:W4(V549_D-1) to G:W-1(V598_D-1) -removing edge Edge(597->598,w:2.0)(T:W-1(V597_D-1)->G:W-1(V598_D-1)) -removing edge Edge(549->597,w:2.0)(AGTCCACCAC...AAGGAAAACT:W4(V549_D-1)->T:W-1(V597_D-1)) -Found potential edge: Edge(549->598,w:2.0) between AGTCCACCAC...AAGGAAAACT:W4(V549_D-1) and G:W-1(V598_D-1) -removing vertex G:W-1(V598_D-1) was concatenated into AGTCCACCAC...AGGAAAACTG:W4(V549_D-1) -Want to move edge Edge(598->599,w:2.0)(G:W-1(V598_D-1)->C:W-1(V599_D-1)) to (AGTCCACCAC...AGGAAAACTG:W4(V549_D-1)->C:W-1(V599_D-1) - adding edge: AGTCCACCAC...AGGAAAACTG:W4(V549_D-1) to C:W-1(V599_D-1) -removing edge Edge(598->599,w:2.0)(G:W-1(V598_D-1)->C:W-1(V599_D-1)) -removing edge Edge(549->598,w:2.0)(AGTCCACCAC...AGGAAAACTG:W4(V549_D-1)->G:W-1(V598_D-1)) -Found potential edge: Edge(549->599,w:2.0) between AGTCCACCAC...AGGAAAACTG:W4(V549_D-1) and C:W-1(V599_D-1) -removing vertex C:W-1(V599_D-1) was concatenated into AGTCCACCAC...GGAAAACTGC:W4(V549_D-1) -Want to move edge Edge(599->600,w:2.0)(C:W-1(V599_D-1)->A:W-1(V600_D-1)) to (AGTCCACCAC...GGAAAACTGC:W4(V549_D-1)->A:W-1(V600_D-1) - adding edge: AGTCCACCAC...GGAAAACTGC:W4(V549_D-1) to A:W-1(V600_D-1) -removing edge Edge(599->600,w:2.0)(C:W-1(V599_D-1)->A:W-1(V600_D-1)) -removing edge Edge(549->599,w:2.0)(AGTCCACCAC...GGAAAACTGC:W4(V549_D-1)->C:W-1(V599_D-1)) -Found potential edge: Edge(549->600,w:2.0) between AGTCCACCAC...GGAAAACTGC:W4(V549_D-1) and A:W-1(V600_D-1) -removing vertex A:W-1(V600_D-1) was concatenated into AGTCCACCAC...GAAAACTGCA:W4(V549_D-1) -Want to move edge Edge(600->601,w:2.0)(A:W-1(V600_D-1)->T:W-1(V601_D-1)) to (AGTCCACCAC...GAAAACTGCA:W4(V549_D-1)->T:W-1(V601_D-1) - adding edge: AGTCCACCAC...GAAAACTGCA:W4(V549_D-1) to T:W-1(V601_D-1) -removing edge Edge(600->601,w:2.0)(A:W-1(V600_D-1)->T:W-1(V601_D-1)) -removing edge Edge(549->600,w:2.0)(AGTCCACCAC...GAAAACTGCA:W4(V549_D-1)->A:W-1(V600_D-1)) -Found potential edge: Edge(549->601,w:2.0) between AGTCCACCAC...GAAAACTGCA:W4(V549_D-1) and T:W-1(V601_D-1) -removing vertex T:W-1(V601_D-1) was concatenated into AGTCCACCAC...AAAACTGCAT:W4(V549_D-1) -Want to move edge Edge(601->602,w:2.0)(T:W-1(V601_D-1)->C:W-1(V602_D-1)) to (AGTCCACCAC...AAAACTGCAT:W4(V549_D-1)->C:W-1(V602_D-1) - adding edge: AGTCCACCAC...AAAACTGCAT:W4(V549_D-1) to C:W-1(V602_D-1) -removing edge Edge(601->602,w:2.0)(T:W-1(V601_D-1)->C:W-1(V602_D-1)) -removing edge Edge(549->601,w:2.0)(AGTCCACCAC...AAAACTGCAT:W4(V549_D-1)->T:W-1(V601_D-1)) -Found potential edge: Edge(549->602,w:2.0) between AGTCCACCAC...AAAACTGCAT:W4(V549_D-1) and C:W-1(V602_D-1) -removing vertex C:W-1(V602_D-1) was concatenated into AGTCCACCAC...AAACTGCATC:W4(V549_D-1) -Want to move edge Edge(602->603,w:2.0)(C:W-1(V602_D-1)->T:W-1(V603_D-1)) to (AGTCCACCAC...AAACTGCATC:W4(V549_D-1)->T:W-1(V603_D-1) - adding edge: AGTCCACCAC...AAACTGCATC:W4(V549_D-1) to T:W-1(V603_D-1) -removing edge Edge(602->603,w:2.0)(C:W-1(V602_D-1)->T:W-1(V603_D-1)) -removing edge Edge(549->602,w:2.0)(AGTCCACCAC...AAACTGCATC:W4(V549_D-1)->C:W-1(V602_D-1)) -Found potential edge: Edge(549->603,w:2.0) between AGTCCACCAC...AAACTGCATC:W4(V549_D-1) and T:W-1(V603_D-1) -removing vertex T:W-1(V603_D-1) was concatenated into AGTCCACCAC...AACTGCATCT:W4(V549_D-1) -Want to move edge Edge(603->604,w:2.0)(T:W-1(V603_D-1)->T:W-1(V604_D-1)) to (AGTCCACCAC...AACTGCATCT:W4(V549_D-1)->T:W-1(V604_D-1) - adding edge: AGTCCACCAC...AACTGCATCT:W4(V549_D-1) to T:W-1(V604_D-1) -removing edge Edge(603->604,w:2.0)(T:W-1(V603_D-1)->T:W-1(V604_D-1)) -removing edge Edge(549->603,w:2.0)(AGTCCACCAC...AACTGCATCT:W4(V549_D-1)->T:W-1(V603_D-1)) -Found potential edge: Edge(549->604,w:2.0) between AGTCCACCAC...AACTGCATCT:W4(V549_D-1) and T:W-1(V604_D-1) -removing vertex T:W-1(V604_D-1) was concatenated into AGTCCACCAC...ACTGCATCTT:W4(V549_D-1) -Want to move edge Edge(604->605,w:2.0)(T:W-1(V604_D-1)->T:W-1(V605_D-1)) to (AGTCCACCAC...ACTGCATCTT:W4(V549_D-1)->T:W-1(V605_D-1) - adding edge: AGTCCACCAC...ACTGCATCTT:W4(V549_D-1) to T:W-1(V605_D-1) -removing edge Edge(604->605,w:2.0)(T:W-1(V604_D-1)->T:W-1(V605_D-1)) -removing edge Edge(549->604,w:2.0)(AGTCCACCAC...ACTGCATCTT:W4(V549_D-1)->T:W-1(V604_D-1)) -Found potential edge: Edge(549->605,w:2.0) between AGTCCACCAC...ACTGCATCTT:W4(V549_D-1) and T:W-1(V605_D-1) -removing vertex T:W-1(V605_D-1) was concatenated into AGTCCACCAC...CTGCATCTTT:W4(V549_D-1) -Want to move edge Edge(605->606,w:2.0)(T:W-1(V605_D-1)->G:W-1(V606_D-1)) to (AGTCCACCAC...CTGCATCTTT:W4(V549_D-1)->G:W-1(V606_D-1) - adding edge: AGTCCACCAC...CTGCATCTTT:W4(V549_D-1) to G:W-1(V606_D-1) -removing edge Edge(605->606,w:2.0)(T:W-1(V605_D-1)->G:W-1(V606_D-1)) -removing edge Edge(549->605,w:2.0)(AGTCCACCAC...CTGCATCTTT:W4(V549_D-1)->T:W-1(V605_D-1)) -Found potential edge: Edge(549->606,w:2.0) between AGTCCACCAC...CTGCATCTTT:W4(V549_D-1) and G:W-1(V606_D-1) -removing vertex G:W-1(V606_D-1) was concatenated into AGTCCACCAC...TGCATCTTTG:W4(V549_D-1) -Want to move edge Edge(606->607,w:4.0)(G:W-1(V606_D-1)->C:W-1(V607_D-1)) to (AGTCCACCAC...TGCATCTTTG:W4(V549_D-1)->C:W-1(V607_D-1) - adding edge: AGTCCACCAC...TGCATCTTTG:W4(V549_D-1) to C:W-1(V607_D-1) -removing edge Edge(606->607,w:4.0)(G:W-1(V606_D-1)->C:W-1(V607_D-1)) -removing edge Edge(549->606,w:2.0)(AGTCCACCAC...TGCATCTTTG:W4(V549_D-1)->G:W-1(V606_D-1)) -Found potential edge: Edge(549->607,w:4.0) between AGTCCACCAC...TGCATCTTTG:W4(V549_D-1) and C:W-1(V607_D-1) -removing vertex C:W-1(V607_D-1) was concatenated into AGTCCACCAC...GCATCTTTGC:W4(V549_D-1) -Want to move edge Edge(607->608,w:4.0)(C:W-1(V607_D-1)->C:W-1(V608_D-1)) to (AGTCCACCAC...GCATCTTTGC:W4(V549_D-1)->C:W-1(V608_D-1) - adding edge: AGTCCACCAC...GCATCTTTGC:W4(V549_D-1) to C:W-1(V608_D-1) -removing edge Edge(607->608,w:4.0)(C:W-1(V607_D-1)->C:W-1(V608_D-1)) -removing edge Edge(549->607,w:4.0)(AGTCCACCAC...GCATCTTTGC:W4(V549_D-1)->C:W-1(V607_D-1)) -Found potential edge: Edge(549->608,w:4.0) between AGTCCACCAC...GCATCTTTGC:W4(V549_D-1) and C:W-1(V608_D-1) -removing vertex C:W-1(V608_D-1) was concatenated into AGTCCACCAC...CATCTTTGCC:W4(V549_D-1) -Want to move edge Edge(608->609,w:4.0)(C:W-1(V608_D-1)->C:W-1(V609_D-1)) to (AGTCCACCAC...CATCTTTGCC:W4(V549_D-1)->C:W-1(V609_D-1) - adding edge: AGTCCACCAC...CATCTTTGCC:W4(V549_D-1) to C:W-1(V609_D-1) -removing edge Edge(608->609,w:4.0)(C:W-1(V608_D-1)->C:W-1(V609_D-1)) -removing edge Edge(549->608,w:4.0)(AGTCCACCAC...CATCTTTGCC:W4(V549_D-1)->C:W-1(V608_D-1)) -Found potential edge: Edge(549->609,w:4.0) between AGTCCACCAC...CATCTTTGCC:W4(V549_D-1) and C:W-1(V609_D-1) -removing vertex C:W-1(V609_D-1) was concatenated into AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1) -Want to move edge Edge(609->610,w:4.0)(C:W-1(V609_D-1)->A:W-1(V610_D-1)) to (AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1)->A:W-1(V610_D-1) - adding edge: AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1) to A:W-1(V610_D-1) -removing edge Edge(609->610,w:4.0)(C:W-1(V609_D-1)->A:W-1(V610_D-1)) -removing edge Edge(549->609,w:4.0)(AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1)->C:W-1(V609_D-1)) -Found potential edge: Edge(549->610,w:4.0) between AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1) and A:W-1(V610_D-1) -removing vertex A:W-1(V610_D-1) was concatenated into AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1) -Want to move edge Edge(610->611,w:4.0)(A:W-1(V610_D-1)->C:W-1(V611_D-1)) to (AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1)->C:W-1(V611_D-1) - adding edge: AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1) to C:W-1(V611_D-1) -removing edge Edge(610->611,w:4.0)(A:W-1(V610_D-1)->C:W-1(V611_D-1)) -removing edge Edge(549->610,w:4.0)(AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1)->A:W-1(V610_D-1)) -Found potential edge: Edge(549->611,w:4.0) between AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1) and C:W-1(V611_D-1) -removing vertex C:W-1(V611_D-1) was concatenated into AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1) -Want to move edge Edge(611->612,w:4.0)(C:W-1(V611_D-1)->A:W-1(V612_D-1)) to (AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1)->A:W-1(V612_D-1) - adding edge: AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1) to A:W-1(V612_D-1) -removing edge Edge(611->612,w:4.0)(C:W-1(V611_D-1)->A:W-1(V612_D-1)) -removing edge Edge(549->611,w:4.0)(AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1)->C:W-1(V611_D-1)) -Found potential edge: Edge(549->612,w:4.0) between AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1) and A:W-1(V612_D-1) -removing vertex A:W-1(V612_D-1) was concatenated into AGTCCACCAC...TTTGCCCACA:W4(V549_D-1) -Want to move edge Edge(612->613,w:6.0)(A:W-1(V612_D-1)->T:W-1(V613_D-1)) to (AGTCCACCAC...TTTGCCCACA:W4(V549_D-1)->T:W-1(V613_D-1) - adding edge: AGTCCACCAC...TTTGCCCACA:W4(V549_D-1) to T:W-1(V613_D-1) -removing edge Edge(612->613,w:6.0)(A:W-1(V612_D-1)->T:W-1(V613_D-1)) -removing edge Edge(549->612,w:4.0)(AGTCCACCAC...TTTGCCCACA:W4(V549_D-1)->A:W-1(V612_D-1)) -Found potential edge: Edge(549->613,w:6.0) between AGTCCACCAC...TTTGCCCACA:W4(V549_D-1) and T:W-1(V613_D-1) -removing vertex T:W-1(V613_D-1) was concatenated into AGTCCACCAC...TTGCCCACAT:W4(V549_D-1) -Want to move edge Edge(613->614,w:6.0)(T:W-1(V613_D-1)->G:W-1(V614_D-1)) to (AGTCCACCAC...TTGCCCACAT:W4(V549_D-1)->G:W-1(V614_D-1) - adding edge: AGTCCACCAC...TTGCCCACAT:W4(V549_D-1) to G:W-1(V614_D-1) -removing edge Edge(613->614,w:6.0)(T:W-1(V613_D-1)->G:W-1(V614_D-1)) -removing edge Edge(549->613,w:6.0)(AGTCCACCAC...TTGCCCACAT:W4(V549_D-1)->T:W-1(V613_D-1)) -Found potential edge: Edge(549->614,w:6.0) between AGTCCACCAC...TTGCCCACAT:W4(V549_D-1) and G:W-1(V614_D-1) -removing vertex G:W-1(V614_D-1) was concatenated into AGTCCACCAC...TGCCCACATG:W4(V549_D-1) -Want to move edge Edge(614->615,w:6.0)(G:W-1(V614_D-1)->A:W-1(V615_D-1)) to (AGTCCACCAC...TGCCCACATG:W4(V549_D-1)->A:W-1(V615_D-1) - adding edge: AGTCCACCAC...TGCCCACATG:W4(V549_D-1) to A:W-1(V615_D-1) -removing edge Edge(614->615,w:6.0)(G:W-1(V614_D-1)->A:W-1(V615_D-1)) -removing edge Edge(549->614,w:6.0)(AGTCCACCAC...TGCCCACATG:W4(V549_D-1)->G:W-1(V614_D-1)) -Found potential edge: Edge(549->615,w:6.0) between AGTCCACCAC...TGCCCACATG:W4(V549_D-1) and A:W-1(V615_D-1) -removing vertex A:W-1(V615_D-1) was concatenated into AGTCCACCAC...GCCCACATGA:W4(V549_D-1) -Want to move edge Edge(615->616,w:6.0)(A:W-1(V615_D-1)->T:W-1(V616_D-1)) to (AGTCCACCAC...GCCCACATGA:W4(V549_D-1)->T:W-1(V616_D-1) - adding edge: AGTCCACCAC...GCCCACATGA:W4(V549_D-1) to T:W-1(V616_D-1) -removing edge Edge(615->616,w:6.0)(A:W-1(V615_D-1)->T:W-1(V616_D-1)) -removing edge Edge(549->615,w:6.0)(AGTCCACCAC...GCCCACATGA:W4(V549_D-1)->A:W-1(V615_D-1)) -Found potential edge: Edge(549->616,w:6.0) between AGTCCACCAC...GCCCACATGA:W4(V549_D-1) and T:W-1(V616_D-1) -removing vertex T:W-1(V616_D-1) was concatenated into AGTCCACCAC...CCCACATGAT:W4(V549_D-1) -Want to move edge Edge(616->617,w:6.0)(T:W-1(V616_D-1)->G:W-1(V617_D-1)) to (AGTCCACCAC...CCCACATGAT:W4(V549_D-1)->G:W-1(V617_D-1) - adding edge: AGTCCACCAC...CCCACATGAT:W4(V549_D-1) to G:W-1(V617_D-1) -removing edge Edge(616->617,w:6.0)(T:W-1(V616_D-1)->G:W-1(V617_D-1)) -removing edge Edge(549->616,w:6.0)(AGTCCACCAC...CCCACATGAT:W4(V549_D-1)->T:W-1(V616_D-1)) -Found potential edge: Edge(549->617,w:6.0) between AGTCCACCAC...CCCACATGAT:W4(V549_D-1) and G:W-1(V617_D-1) -removing vertex G:W-1(V617_D-1) was concatenated into AGTCCACCAC...CCACATGATG:W4(V549_D-1) -Want to move edge Edge(617->618,w:6.0)(G:W-1(V617_D-1)->C:W-1(V618_D-1)) to (AGTCCACCAC...CCACATGATG:W4(V549_D-1)->C:W-1(V618_D-1) - adding edge: AGTCCACCAC...CCACATGATG:W4(V549_D-1) to C:W-1(V618_D-1) -removing edge Edge(617->618,w:6.0)(G:W-1(V617_D-1)->C:W-1(V618_D-1)) -removing edge Edge(549->617,w:6.0)(AGTCCACCAC...CCACATGATG:W4(V549_D-1)->G:W-1(V617_D-1)) -Found potential edge: Edge(549->618,w:6.0) between AGTCCACCAC...CCACATGATG:W4(V549_D-1) and C:W-1(V618_D-1) -removing vertex C:W-1(V618_D-1) was concatenated into AGTCCACCAC...CACATGATGC:W4(V549_D-1) -Want to move edge Edge(618->619,w:6.0)(C:W-1(V618_D-1)->T:W-1(V619_D-1)) to (AGTCCACCAC...CACATGATGC:W4(V549_D-1)->T:W-1(V619_D-1) - adding edge: AGTCCACCAC...CACATGATGC:W4(V549_D-1) to T:W-1(V619_D-1) -removing edge Edge(618->619,w:6.0)(C:W-1(V618_D-1)->T:W-1(V619_D-1)) -removing edge Edge(549->618,w:6.0)(AGTCCACCAC...CACATGATGC:W4(V549_D-1)->C:W-1(V618_D-1)) -Found potential edge: Edge(549->619,w:6.0) between AGTCCACCAC...CACATGATGC:W4(V549_D-1) and T:W-1(V619_D-1) -removing vertex T:W-1(V619_D-1) was concatenated into AGTCCACCAC...ACATGATGCT:W4(V549_D-1) -Want to move edge Edge(619->620,w:4.0)(T:W-1(V619_D-1)->T:W-1(V620_D-1)) to (AGTCCACCAC...ACATGATGCT:W4(V549_D-1)->T:W-1(V620_D-1) - adding edge: AGTCCACCAC...ACATGATGCT:W4(V549_D-1) to T:W-1(V620_D-1) -removing edge Edge(619->620,w:4.0)(T:W-1(V619_D-1)->T:W-1(V620_D-1)) -removing edge Edge(549->619,w:6.0)(AGTCCACCAC...ACATGATGCT:W4(V549_D-1)->T:W-1(V619_D-1)) -Found potential edge: Edge(549->620,w:4.0) between AGTCCACCAC...ACATGATGCT:W4(V549_D-1) and T:W-1(V620_D-1) -removing vertex T:W-1(V620_D-1) was concatenated into AGTCCACCAC...CATGATGCTT:W4(V549_D-1) -Want to move edge Edge(620->621,w:4.0)(T:W-1(V620_D-1)->G:W-1(V621_D-1)) to (AGTCCACCAC...CATGATGCTT:W4(V549_D-1)->G:W-1(V621_D-1) - adding edge: AGTCCACCAC...CATGATGCTT:W4(V549_D-1) to G:W-1(V621_D-1) -removing edge Edge(620->621,w:4.0)(T:W-1(V620_D-1)->G:W-1(V621_D-1)) -removing edge Edge(549->620,w:4.0)(AGTCCACCAC...CATGATGCTT:W4(V549_D-1)->T:W-1(V620_D-1)) -Found potential edge: Edge(549->621,w:4.0) between AGTCCACCAC...CATGATGCTT:W4(V549_D-1) and G:W-1(V621_D-1) -removing vertex G:W-1(V621_D-1) was concatenated into AGTCCACCAC...ATGATGCTTG:W4(V549_D-1) -Want to move edge Edge(621->622,w:4.0)(G:W-1(V621_D-1)->G:W-1(V622_D-1)) to (AGTCCACCAC...ATGATGCTTG:W4(V549_D-1)->G:W-1(V622_D-1) - adding edge: AGTCCACCAC...ATGATGCTTG:W4(V549_D-1) to G:W-1(V622_D-1) -removing edge Edge(621->622,w:4.0)(G:W-1(V621_D-1)->G:W-1(V622_D-1)) -removing edge Edge(549->621,w:4.0)(AGTCCACCAC...ATGATGCTTG:W4(V549_D-1)->G:W-1(V621_D-1)) -Found potential edge: Edge(549->622,w:4.0) between AGTCCACCAC...ATGATGCTTG:W4(V549_D-1) and G:W-1(V622_D-1) -removing vertex G:W-1(V622_D-1) was concatenated into AGTCCACCAC...TGATGCTTGG:W4(V549_D-1) -Want to move edge Edge(622->623,w:4.0)(G:W-1(V622_D-1)->T:W-1(V623_D-1)) to (AGTCCACCAC...TGATGCTTGG:W4(V549_D-1)->T:W-1(V623_D-1) - adding edge: AGTCCACCAC...TGATGCTTGG:W4(V549_D-1) to T:W-1(V623_D-1) -removing edge Edge(622->623,w:4.0)(G:W-1(V622_D-1)->T:W-1(V623_D-1)) -removing edge Edge(549->622,w:4.0)(AGTCCACCAC...TGATGCTTGG:W4(V549_D-1)->G:W-1(V622_D-1)) -Found potential edge: Edge(549->623,w:4.0) between AGTCCACCAC...TGATGCTTGG:W4(V549_D-1) and T:W-1(V623_D-1) -removing vertex T:W-1(V623_D-1) was concatenated into AGTCCACCAC...GATGCTTGGT:W4(V549_D-1) -Want to move edge Edge(623->624,w:4.0)(T:W-1(V623_D-1)->T:W-1(V624_D-1)) to (AGTCCACCAC...GATGCTTGGT:W4(V549_D-1)->T:W-1(V624_D-1) - adding edge: AGTCCACCAC...GATGCTTGGT:W4(V549_D-1) to T:W-1(V624_D-1) -removing edge Edge(623->624,w:4.0)(T:W-1(V623_D-1)->T:W-1(V624_D-1)) -removing edge Edge(549->623,w:4.0)(AGTCCACCAC...GATGCTTGGT:W4(V549_D-1)->T:W-1(V623_D-1)) -Found potential edge: Edge(549->624,w:4.0) between AGTCCACCAC...GATGCTTGGT:W4(V549_D-1) and T:W-1(V624_D-1) -removing vertex T:W-1(V624_D-1) was concatenated into AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1) -Want to move edge Edge(624->625,w:4.0)(T:W-1(V624_D-1)->A:W-1(V625_D-1)) to (AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1)->A:W-1(V625_D-1) - adding edge: AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1) to A:W-1(V625_D-1) -removing edge Edge(624->625,w:4.0)(T:W-1(V624_D-1)->A:W-1(V625_D-1)) -removing edge Edge(549->624,w:4.0)(AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1)->T:W-1(V624_D-1)) -Found potential edge: Edge(549->625,w:4.0) between AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1) and A:W-1(V625_D-1) -removing vertex A:W-1(V625_D-1) was concatenated into AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1) -Want to move edge Edge(625->626,w:4.0)(A:W-1(V625_D-1)->A:W-1(V626_D-1)) to (AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1)->A:W-1(V626_D-1) - adding edge: AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1) to A:W-1(V626_D-1) -removing edge Edge(625->626,w:4.0)(A:W-1(V625_D-1)->A:W-1(V626_D-1)) -removing edge Edge(549->625,w:4.0)(AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1)->A:W-1(V625_D-1)) -Found potential edge: Edge(549->626,w:4.0) between AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1) and A:W-1(V626_D-1) -removing vertex A:W-1(V626_D-1) was concatenated into AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1) -Want to move edge Edge(626->627,w:4.0)(A:W-1(V626_D-1)->G:W-1(V627_D-1)) to (AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1)->G:W-1(V627_D-1) - adding edge: AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1) to G:W-1(V627_D-1) -removing edge Edge(626->627,w:4.0)(A:W-1(V626_D-1)->G:W-1(V627_D-1)) -removing edge Edge(549->626,w:4.0)(AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1)->A:W-1(V626_D-1)) -Found potential edge: Edge(549->627,w:4.0) between AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1) and G:W-1(V627_D-1) -removing vertex G:W-1(V627_D-1) was concatenated into AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1) -Want to move edge Edge(627->628,w:4.0)(G:W-1(V627_D-1)->A:W-1(V628_D-1)) to (AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1)->A:W-1(V628_D-1) - adding edge: AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1) to A:W-1(V628_D-1) -removing edge Edge(627->628,w:4.0)(G:W-1(V627_D-1)->A:W-1(V628_D-1)) -removing edge Edge(549->627,w:4.0)(AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1)->G:W-1(V627_D-1)) -Found potential edge: Edge(549->628,w:4.0) between AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1) and A:W-1(V628_D-1) -removing vertex A:W-1(V628_D-1) was concatenated into AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1) -Want to move edge Edge(628->629,w:4.0)(A:W-1(V628_D-1)->C:W-1(V629_D-1)) to (AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1)->C:W-1(V629_D-1) - adding edge: AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1) to C:W-1(V629_D-1) -removing edge Edge(628->629,w:4.0)(A:W-1(V628_D-1)->C:W-1(V629_D-1)) -removing edge Edge(549->628,w:4.0)(AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1)->A:W-1(V628_D-1)) -Found potential edge: Edge(549->629,w:4.0) between AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1) and C:W-1(V629_D-1) -removing vertex C:W-1(V629_D-1) was concatenated into AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1) -Want to move edge Edge(629->630,w:4.0)(C:W-1(V629_D-1)->A:W-1(V630_D-1)) to (AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1)->A:W-1(V630_D-1) - adding edge: AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1) to A:W-1(V630_D-1) -removing edge Edge(629->630,w:4.0)(C:W-1(V629_D-1)->A:W-1(V630_D-1)) -removing edge Edge(549->629,w:4.0)(AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1)->C:W-1(V629_D-1)) -Found potential edge: Edge(549->630,w:4.0) between AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1) and A:W-1(V630_D-1) -removing vertex A:W-1(V630_D-1) was concatenated into AGTCCACCAC...GGTTAAGACA:W4(V549_D-1) -Want to move edge Edge(630->631,w:4.0)(A:W-1(V630_D-1)->A:W-1(V631_D-1)) to (AGTCCACCAC...GGTTAAGACA:W4(V549_D-1)->A:W-1(V631_D-1) - adding edge: AGTCCACCAC...GGTTAAGACA:W4(V549_D-1) to A:W-1(V631_D-1) -removing edge Edge(630->631,w:4.0)(A:W-1(V630_D-1)->A:W-1(V631_D-1)) -removing edge Edge(549->630,w:4.0)(AGTCCACCAC...GGTTAAGACA:W4(V549_D-1)->A:W-1(V630_D-1)) -Found potential edge: Edge(549->631,w:4.0) between AGTCCACCAC...GGTTAAGACA:W4(V549_D-1) and A:W-1(V631_D-1) -removing vertex A:W-1(V631_D-1) was concatenated into AGTCCACCAC...GTTAAGACAA:W4(V549_D-1) -Want to move edge Edge(631->632,w:6.0)(A:W-1(V631_D-1)->G:W-1(V632_D-1)) to (AGTCCACCAC...GTTAAGACAA:W4(V549_D-1)->G:W-1(V632_D-1) - adding edge: AGTCCACCAC...GTTAAGACAA:W4(V549_D-1) to G:W-1(V632_D-1) -removing edge Edge(631->632,w:6.0)(A:W-1(V631_D-1)->G:W-1(V632_D-1)) -removing edge Edge(549->631,w:4.0)(AGTCCACCAC...GTTAAGACAA:W4(V549_D-1)->A:W-1(V631_D-1)) -Found potential edge: Edge(549->632,w:6.0) between AGTCCACCAC...GTTAAGACAA:W4(V549_D-1) and G:W-1(V632_D-1) -removing vertex G:W-1(V632_D-1) was concatenated into AGTCCACCAC...TTAAGACAAG:W4(V549_D-1) -Want to move edge Edge(632->633,w:6.0)(G:W-1(V632_D-1)->G:W-1(V633_D-1)) to (AGTCCACCAC...TTAAGACAAG:W4(V549_D-1)->G:W-1(V633_D-1) - adding edge: AGTCCACCAC...TTAAGACAAG:W4(V549_D-1) to G:W-1(V633_D-1) -removing edge Edge(632->633,w:6.0)(G:W-1(V632_D-1)->G:W-1(V633_D-1)) -removing edge Edge(549->632,w:6.0)(AGTCCACCAC...TTAAGACAAG:W4(V549_D-1)->G:W-1(V632_D-1)) -Found potential edge: Edge(549->633,w:6.0) between AGTCCACCAC...TTAAGACAAG:W4(V549_D-1) and G:W-1(V633_D-1) -removing vertex G:W-1(V633_D-1) was concatenated into AGTCCACCAC...TAAGACAAGG:W4(V549_D-1) -Want to move edge Edge(633->634,w:6.0)(G:W-1(V633_D-1)->G:W-1(V634_D-1)) to (AGTCCACCAC...TAAGACAAGG:W4(V549_D-1)->G:W-1(V634_D-1) - adding edge: AGTCCACCAC...TAAGACAAGG:W4(V549_D-1) to G:W-1(V634_D-1) -removing edge Edge(633->634,w:6.0)(G:W-1(V633_D-1)->G:W-1(V634_D-1)) -removing edge Edge(549->633,w:6.0)(AGTCCACCAC...TAAGACAAGG:W4(V549_D-1)->G:W-1(V633_D-1)) -Found potential edge: Edge(549->634,w:6.0) between AGTCCACCAC...TAAGACAAGG:W4(V549_D-1) and G:W-1(V634_D-1) -removing vertex G:W-1(V634_D-1) was concatenated into AGTCCACCAC...AAGACAAGGG:W4(V549_D-1) -Want to move edge Edge(634->635,w:6.0)(G:W-1(V634_D-1)->G:W-1(V635_D-1)) to (AGTCCACCAC...AAGACAAGGG:W4(V549_D-1)->G:W-1(V635_D-1) - adding edge: AGTCCACCAC...AAGACAAGGG:W4(V549_D-1) to G:W-1(V635_D-1) -removing edge Edge(634->635,w:6.0)(G:W-1(V634_D-1)->G:W-1(V635_D-1)) -removing edge Edge(549->634,w:6.0)(AGTCCACCAC...AAGACAAGGG:W4(V549_D-1)->G:W-1(V634_D-1)) -Found potential edge: Edge(549->635,w:6.0) between AGTCCACCAC...AAGACAAGGG:W4(V549_D-1) and G:W-1(V635_D-1) -removing vertex G:W-1(V635_D-1) was concatenated into AGTCCACCAC...AGACAAGGGG:W4(V549_D-1) -Want to move edge Edge(635->636,w:6.0)(G:W-1(V635_D-1)->T:W-1(V636_D-1)) to (AGTCCACCAC...AGACAAGGGG:W4(V549_D-1)->T:W-1(V636_D-1) - adding edge: AGTCCACCAC...AGACAAGGGG:W4(V549_D-1) to T:W-1(V636_D-1) -removing edge Edge(635->636,w:6.0)(G:W-1(V635_D-1)->T:W-1(V636_D-1)) -removing edge Edge(549->635,w:6.0)(AGTCCACCAC...AGACAAGGGG:W4(V549_D-1)->G:W-1(V635_D-1)) -Found potential edge: Edge(549->636,w:6.0) between AGTCCACCAC...AGACAAGGGG:W4(V549_D-1) and T:W-1(V636_D-1) -removing vertex T:W-1(V636_D-1) was concatenated into AGTCCACCAC...GACAAGGGGT:W4(V549_D-1) -Want to move edge Edge(636->637,w:6.0)(T:W-1(V636_D-1)->T:W-1(V637_D-1)) to (AGTCCACCAC...GACAAGGGGT:W4(V549_D-1)->T:W-1(V637_D-1) - adding edge: AGTCCACCAC...GACAAGGGGT:W4(V549_D-1) to T:W-1(V637_D-1) -removing edge Edge(636->637,w:6.0)(T:W-1(V636_D-1)->T:W-1(V637_D-1)) -removing edge Edge(549->636,w:6.0)(AGTCCACCAC...GACAAGGGGT:W4(V549_D-1)->T:W-1(V636_D-1)) -Found potential edge: Edge(549->637,w:6.0) between AGTCCACCAC...GACAAGGGGT:W4(V549_D-1) and T:W-1(V637_D-1) -removing vertex T:W-1(V637_D-1) was concatenated into AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1) -Want to move edge Edge(637->638,w:6.0)(T:W-1(V637_D-1)->A:W-1(V638_D-1)) to (AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1)->A:W-1(V638_D-1) - adding edge: AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1) to A:W-1(V638_D-1) -removing edge Edge(637->638,w:6.0)(T:W-1(V637_D-1)->A:W-1(V638_D-1)) -removing edge Edge(549->637,w:6.0)(AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1)->T:W-1(V637_D-1)) -Found potential edge: Edge(549->638,w:6.0) between AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1) and A:W-1(V638_D-1) -removing vertex A:W-1(V638_D-1) was concatenated into AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1) -Want to move edge Edge(638->639,w:6.0)(A:W-1(V638_D-1)->G:W-1(V639_D-1)) to (AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1)->G:W-1(V639_D-1) - adding edge: AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1) to G:W-1(V639_D-1) -removing edge Edge(638->639,w:6.0)(A:W-1(V638_D-1)->G:W-1(V639_D-1)) -removing edge Edge(549->638,w:6.0)(AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1)->A:W-1(V638_D-1)) -Found potential edge: Edge(549->639,w:6.0) between AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1) and G:W-1(V639_D-1) -removing vertex G:W-1(V639_D-1) was concatenated into AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1) -Want to move edge Edge(639->640,w:8.0)(G:W-1(V639_D-1)->T:W-1(V640_D-1)) to (AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1)->T:W-1(V640_D-1) - adding edge: AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1) to T:W-1(V640_D-1) -removing edge Edge(639->640,w:8.0)(G:W-1(V639_D-1)->T:W-1(V640_D-1)) -removing edge Edge(549->639,w:6.0)(AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1)->G:W-1(V639_D-1)) -Found potential edge: Edge(549->640,w:8.0) between AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1) and T:W-1(V640_D-1) -removing vertex T:W-1(V640_D-1) was concatenated into AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1) -Want to move edge Edge(640->641,w:8.0)(T:W-1(V640_D-1)->G:W-1(V641_D-1)) to (AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1)->G:W-1(V641_D-1) - adding edge: AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1) to G:W-1(V641_D-1) -removing edge Edge(640->641,w:8.0)(T:W-1(V640_D-1)->G:W-1(V641_D-1)) -removing edge Edge(549->640,w:8.0)(AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1)->T:W-1(V640_D-1)) -Found potential edge: Edge(549->641,w:8.0) between AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1) and G:W-1(V641_D-1) -removing vertex G:W-1(V641_D-1) was concatenated into AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1) -Want to move edge Edge(641->642,w:8.0)(G:W-1(V641_D-1)->A:W-1(V642_D-1)) to (AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1)->A:W-1(V642_D-1) - adding edge: AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1) to A:W-1(V642_D-1) -removing edge Edge(641->642,w:8.0)(G:W-1(V641_D-1)->A:W-1(V642_D-1)) -removing edge Edge(549->641,w:8.0)(AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1)->G:W-1(V641_D-1)) -Found potential edge: Edge(549->642,w:8.0) between AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1) and A:W-1(V642_D-1) -removing vertex A:W-1(V642_D-1) was concatenated into AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1) -Want to move edge Edge(642->643,w:8.0)(A:W-1(V642_D-1)->C:W-1(V643_D-1)) to (AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1)->C:W-1(V643_D-1) - adding edge: AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1) to C:W-1(V643_D-1) -removing edge Edge(642->643,w:8.0)(A:W-1(V642_D-1)->C:W-1(V643_D-1)) -removing edge Edge(549->642,w:8.0)(AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1)->A:W-1(V642_D-1)) -Found potential edge: Edge(549->643,w:8.0) between AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1) and C:W-1(V643_D-1) -removing vertex C:W-1(V643_D-1) was concatenated into AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1) -Want to move edge Edge(643->644,w:8.0)(C:W-1(V643_D-1)->A:W-1(V644_D-1)) to (AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1)->A:W-1(V644_D-1) - adding edge: AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1) to A:W-1(V644_D-1) -removing edge Edge(643->644,w:8.0)(C:W-1(V643_D-1)->A:W-1(V644_D-1)) -removing edge Edge(549->643,w:8.0)(AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1)->C:W-1(V643_D-1)) -Found potential edge: Edge(549->644,w:8.0) between AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1) and A:W-1(V644_D-1) -removing vertex A:W-1(V644_D-1) was concatenated into AGTCCACCAC...GTTAGTGACA:W4(V549_D-1) -Want to move edge Edge(644->645,w:8.0)(A:W-1(V644_D-1)->A:W-1(V645_D-1)) to (AGTCCACCAC...GTTAGTGACA:W4(V549_D-1)->A:W-1(V645_D-1) - adding edge: AGTCCACCAC...GTTAGTGACA:W4(V549_D-1) to A:W-1(V645_D-1) -removing edge Edge(644->645,w:8.0)(A:W-1(V644_D-1)->A:W-1(V645_D-1)) -removing edge Edge(549->644,w:8.0)(AGTCCACCAC...GTTAGTGACA:W4(V549_D-1)->A:W-1(V644_D-1)) -Found potential edge: Edge(549->645,w:8.0) between AGTCCACCAC...GTTAGTGACA:W4(V549_D-1) and A:W-1(V645_D-1) -removing vertex A:W-1(V645_D-1) was concatenated into AGTCCACCAC...TTAGTGACAA:W4(V549_D-1) -Want to move edge Edge(645->646,w:8.0)(A:W-1(V645_D-1)->A:W-1(V646_D-1)) to (AGTCCACCAC...TTAGTGACAA:W4(V549_D-1)->A:W-1(V646_D-1) - adding edge: AGTCCACCAC...TTAGTGACAA:W4(V549_D-1) to A:W-1(V646_D-1) -removing edge Edge(645->646,w:8.0)(A:W-1(V645_D-1)->A:W-1(V646_D-1)) -removing edge Edge(549->645,w:8.0)(AGTCCACCAC...TTAGTGACAA:W4(V549_D-1)->A:W-1(V645_D-1)) -Found potential edge: Edge(549->646,w:8.0) between AGTCCACCAC...TTAGTGACAA:W4(V549_D-1) and A:W-1(V646_D-1) -removing vertex A:W-1(V646_D-1) was concatenated into AGTCCACCAC...TAGTGACAAA:W4(V549_D-1) -Want to move edge Edge(646->647,w:8.0)(A:W-1(V646_D-1)->G:W-1(V647_D-1)) to (AGTCCACCAC...TAGTGACAAA:W4(V549_D-1)->G:W-1(V647_D-1) - adding edge: AGTCCACCAC...TAGTGACAAA:W4(V549_D-1) to G:W-1(V647_D-1) -removing edge Edge(646->647,w:8.0)(A:W-1(V646_D-1)->G:W-1(V647_D-1)) -removing edge Edge(549->646,w:8.0)(AGTCCACCAC...TAGTGACAAA:W4(V549_D-1)->A:W-1(V646_D-1)) -Found potential edge: Edge(549->647,w:8.0) between AGTCCACCAC...TAGTGACAAA:W4(V549_D-1) and G:W-1(V647_D-1) -removing vertex G:W-1(V647_D-1) was concatenated into AGTCCACCAC...AGTGACAAAG:W4(V549_D-1) -Want to move edge Edge(647->648,w:8.0)(G:W-1(V647_D-1)->T:W-1(V648_D-1)) to (AGTCCACCAC...AGTGACAAAG:W4(V549_D-1)->T:W-1(V648_D-1) - adding edge: AGTCCACCAC...AGTGACAAAG:W4(V549_D-1) to T:W-1(V648_D-1) -removing edge Edge(647->648,w:8.0)(G:W-1(V647_D-1)->T:W-1(V648_D-1)) -removing edge Edge(549->647,w:8.0)(AGTCCACCAC...AGTGACAAAG:W4(V549_D-1)->G:W-1(V647_D-1)) -Found potential edge: Edge(549->648,w:8.0) between AGTCCACCAC...AGTGACAAAG:W4(V549_D-1) and T:W-1(V648_D-1) -removing vertex T:W-1(V648_D-1) was concatenated into AGTCCACCAC...GTGACAAAGT:W4(V549_D-1) -Want to move edge Edge(648->649,w:8.0)(T:W-1(V648_D-1)->A:W-1(V649_D-1)) to (AGTCCACCAC...GTGACAAAGT:W4(V549_D-1)->A:W-1(V649_D-1) - adding edge: AGTCCACCAC...GTGACAAAGT:W4(V549_D-1) to A:W-1(V649_D-1) -removing edge Edge(648->649,w:8.0)(T:W-1(V648_D-1)->A:W-1(V649_D-1)) -removing edge Edge(549->648,w:8.0)(AGTCCACCAC...GTGACAAAGT:W4(V549_D-1)->T:W-1(V648_D-1)) -Found potential edge: Edge(549->649,w:8.0) between AGTCCACCAC...GTGACAAAGT:W4(V549_D-1) and A:W-1(V649_D-1) -removing vertex A:W-1(V649_D-1) was concatenated into AGTCCACCAC...TGACAAAGTA:W4(V549_D-1) -Want to move edge Edge(649->650,w:8.0)(A:W-1(V649_D-1)->A:W-1(V650_D-1)) to (AGTCCACCAC...TGACAAAGTA:W4(V549_D-1)->A:W-1(V650_D-1) - adding edge: AGTCCACCAC...TGACAAAGTA:W4(V549_D-1) to A:W-1(V650_D-1) -removing edge Edge(649->650,w:8.0)(A:W-1(V649_D-1)->A:W-1(V650_D-1)) -removing edge Edge(549->649,w:8.0)(AGTCCACCAC...TGACAAAGTA:W4(V549_D-1)->A:W-1(V649_D-1)) -Found potential edge: Edge(549->650,w:8.0) between AGTCCACCAC...TGACAAAGTA:W4(V549_D-1) and A:W-1(V650_D-1) -removing vertex A:W-1(V650_D-1) was concatenated into AGTCCACCAC...GACAAAGTAA:W4(V549_D-1) -Want to move edge Edge(650->651,w:8.0)(A:W-1(V650_D-1)->A:W-1(V651_D-1)) to (AGTCCACCAC...GACAAAGTAA:W4(V549_D-1)->A:W-1(V651_D-1) - adding edge: AGTCCACCAC...GACAAAGTAA:W4(V549_D-1) to A:W-1(V651_D-1) -removing edge Edge(650->651,w:8.0)(A:W-1(V650_D-1)->A:W-1(V651_D-1)) -removing edge Edge(549->650,w:8.0)(AGTCCACCAC...GACAAAGTAA:W4(V549_D-1)->A:W-1(V650_D-1)) -Found potential edge: Edge(549->651,w:8.0) between AGTCCACCAC...GACAAAGTAA:W4(V549_D-1) and A:W-1(V651_D-1) -removing vertex A:W-1(V651_D-1) was concatenated into AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1) -Want to move edge Edge(651->652,w:8.0)(A:W-1(V651_D-1)->G:W-1(V652_D-1)) to (AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1)->G:W-1(V652_D-1) - adding edge: AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1) to G:W-1(V652_D-1) -removing edge Edge(651->652,w:8.0)(A:W-1(V651_D-1)->G:W-1(V652_D-1)) -removing edge Edge(549->651,w:8.0)(AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1)->A:W-1(V651_D-1)) -Found potential edge: Edge(549->652,w:8.0) between AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1) and G:W-1(V652_D-1) -removing vertex G:W-1(V652_D-1) was concatenated into AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1) -Want to move edge Edge(652->653,w:8.0)(G:W-1(V652_D-1)->A:W-1(V653_D-1)) to (AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1)->A:W-1(V653_D-1) - adding edge: AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1) to A:W-1(V653_D-1) -removing edge Edge(652->653,w:8.0)(G:W-1(V652_D-1)->A:W-1(V653_D-1)) -removing edge Edge(549->652,w:8.0)(AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1)->G:W-1(V652_D-1)) -Found potential edge: Edge(549->653,w:8.0) between AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1) and A:W-1(V653_D-1) -removing vertex A:W-1(V653_D-1) was concatenated into AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1) -Want to move edge Edge(653->654,w:8.0)(A:W-1(V653_D-1)->G:W-1(V654_D-1)) to (AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1)->G:W-1(V654_D-1) - adding edge: AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1) to G:W-1(V654_D-1) -removing edge Edge(653->654,w:8.0)(A:W-1(V653_D-1)->G:W-1(V654_D-1)) -removing edge Edge(549->653,w:8.0)(AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1)->A:W-1(V653_D-1)) -Found potential edge: Edge(549->654,w:8.0) between AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1) and G:W-1(V654_D-1) -removing vertex G:W-1(V654_D-1) was concatenated into AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1) -Want to move edge Edge(654->655,w:10.0)(G:W-1(V654_D-1)->G:W-1(V655_D-1)) to (AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1)->G:W-1(V655_D-1) - adding edge: AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1) to G:W-1(V655_D-1) -removing edge Edge(654->655,w:10.0)(G:W-1(V654_D-1)->G:W-1(V655_D-1)) -removing edge Edge(549->654,w:8.0)(AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1)->G:W-1(V654_D-1)) -Found potential edge: Edge(549->655,w:10.0) between AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1) and G:W-1(V655_D-1) -removing vertex G:W-1(V655_D-1) was concatenated into AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1) -Want to move edge Edge(655->656,w:10.0)(G:W-1(V655_D-1)->A:W-1(V656_D-1)) to (AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1)->A:W-1(V656_D-1) - adding edge: AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1) to A:W-1(V656_D-1) -removing edge Edge(655->656,w:10.0)(G:W-1(V655_D-1)->A:W-1(V656_D-1)) -removing edge Edge(549->655,w:10.0)(AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1)->G:W-1(V655_D-1)) -Found potential edge: Edge(549->656,w:10.0) between AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1) and A:W-1(V656_D-1) -removing vertex A:W-1(V656_D-1) was concatenated into AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1) -Want to move edge Edge(656->657,w:10.0)(A:W-1(V656_D-1)->T:W-1(V657_D-1)) to (AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1)->T:W-1(V657_D-1) - adding edge: AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1) to T:W-1(V657_D-1) -removing edge Edge(656->657,w:10.0)(A:W-1(V656_D-1)->T:W-1(V657_D-1)) -removing edge Edge(549->656,w:10.0)(AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1)->A:W-1(V656_D-1)) -Found potential edge: Edge(549->657,w:10.0) between AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1) and T:W-1(V657_D-1) -removing vertex T:W-1(V657_D-1) was concatenated into AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1) -Want to move edge Edge(657->658,w:12.0)(T:W-1(V657_D-1)->G:W-1(V658_D-1)) to (AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1)->G:W-1(V658_D-1) - adding edge: AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1) to G:W-1(V658_D-1) -removing edge Edge(657->658,w:12.0)(T:W-1(V657_D-1)->G:W-1(V658_D-1)) -removing edge Edge(549->657,w:10.0)(AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1)->T:W-1(V657_D-1)) -Found potential edge: Edge(549->658,w:12.0) between AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1) and G:W-1(V658_D-1) -removing vertex G:W-1(V658_D-1) was concatenated into AGTCCACCAC...AAAGAGGATG:W5(V549_D-1) -Want to move edge Edge(658->659,w:10.0)(G:W-1(V658_D-1)->A:W-1(V659_D-1)) to (AGTCCACCAC...AAAGAGGATG:W5(V549_D-1)->A:W-1(V659_D-1) - adding edge: AGTCCACCAC...AAAGAGGATG:W5(V549_D-1) to A:W-1(V659_D-1) -removing edge Edge(658->659,w:10.0)(G:W-1(V658_D-1)->A:W-1(V659_D-1)) -removing edge Edge(549->658,w:12.0)(AGTCCACCAC...AAAGAGGATG:W5(V549_D-1)->G:W-1(V658_D-1)) -Found potential edge: Edge(549->659,w:10.0) between AGTCCACCAC...AAAGAGGATG:W5(V549_D-1) and A:W-1(V659_D-1) -removing vertex A:W-1(V659_D-1) was concatenated into AGTCCACCAC...AAGAGGATGA:W5(V549_D-1) -Want to move edge Edge(659->660,w:10.0)(A:W-1(V659_D-1)->C:W-1(V660_D-1)) to (AGTCCACCAC...AAGAGGATGA:W5(V549_D-1)->C:W-1(V660_D-1) - adding edge: AGTCCACCAC...AAGAGGATGA:W5(V549_D-1) to C:W-1(V660_D-1) -removing edge Edge(659->660,w:10.0)(A:W-1(V659_D-1)->C:W-1(V660_D-1)) -removing edge Edge(549->659,w:10.0)(AGTCCACCAC...AAGAGGATGA:W5(V549_D-1)->A:W-1(V659_D-1)) -Found potential edge: Edge(549->660,w:10.0) between AGTCCACCAC...AAGAGGATGA:W5(V549_D-1) and C:W-1(V660_D-1) -removing vertex C:W-1(V660_D-1) was concatenated into AGTCCACCAC...AGAGGATGAC:W5(V549_D-1) -Want to move edge Edge(660->661,w:10.0)(C:W-1(V660_D-1)->A:W-1(V661_D-1)) to (AGTCCACCAC...AGAGGATGAC:W5(V549_D-1)->A:W-1(V661_D-1) - adding edge: AGTCCACCAC...AGAGGATGAC:W5(V549_D-1) to A:W-1(V661_D-1) -removing edge Edge(660->661,w:10.0)(C:W-1(V660_D-1)->A:W-1(V661_D-1)) -removing edge Edge(549->660,w:10.0)(AGTCCACCAC...AGAGGATGAC:W5(V549_D-1)->C:W-1(V660_D-1)) -Found potential edge: Edge(549->661,w:10.0) between AGTCCACCAC...AGAGGATGAC:W5(V549_D-1) and A:W-1(V661_D-1) -removing vertex A:W-1(V661_D-1) was concatenated into AGTCCACCAC...GAGGATGACA:W5(V549_D-1) -Want to move edge Edge(661->662,w:10.0)(A:W-1(V661_D-1)->G:W-1(V662_D-1)) to (AGTCCACCAC...GAGGATGACA:W5(V549_D-1)->G:W-1(V662_D-1) - adding edge: AGTCCACCAC...GAGGATGACA:W5(V549_D-1) to G:W-1(V662_D-1) -removing edge Edge(661->662,w:10.0)(A:W-1(V661_D-1)->G:W-1(V662_D-1)) -removing edge Edge(549->661,w:10.0)(AGTCCACCAC...GAGGATGACA:W5(V549_D-1)->A:W-1(V661_D-1)) -Found potential edge: Edge(549->662,w:10.0) between AGTCCACCAC...GAGGATGACA:W5(V549_D-1) and G:W-1(V662_D-1) -removing vertex G:W-1(V662_D-1) was concatenated into AGTCCACCAC...AGGATGACAG:W5(V549_D-1) -Want to move edge Edge(662->663,w:10.0)(G:W-1(V662_D-1)->A:W-1(V663_D-1)) to (AGTCCACCAC...AGGATGACAG:W5(V549_D-1)->A:W-1(V663_D-1) - adding edge: AGTCCACCAC...AGGATGACAG:W5(V549_D-1) to A:W-1(V663_D-1) -removing edge Edge(662->663,w:10.0)(G:W-1(V662_D-1)->A:W-1(V663_D-1)) -removing edge Edge(549->662,w:10.0)(AGTCCACCAC...AGGATGACAG:W5(V549_D-1)->G:W-1(V662_D-1)) -Found potential edge: Edge(549->663,w:10.0) between AGTCCACCAC...AGGATGACAG:W5(V549_D-1) and A:W-1(V663_D-1) -removing vertex A:W-1(V663_D-1) was concatenated into AGTCCACCAC...GGATGACAGA:W5(V549_D-1) -Want to move edge Edge(663->664,w:10.0)(A:W-1(V663_D-1)->C:W-1(V664_D-1)) to (AGTCCACCAC...GGATGACAGA:W5(V549_D-1)->C:W-1(V664_D-1) - adding edge: AGTCCACCAC...GGATGACAGA:W5(V549_D-1) to C:W-1(V664_D-1) -removing edge Edge(663->664,w:10.0)(A:W-1(V663_D-1)->C:W-1(V664_D-1)) -removing edge Edge(549->663,w:10.0)(AGTCCACCAC...GGATGACAGA:W5(V549_D-1)->A:W-1(V663_D-1)) -Found potential edge: Edge(549->664,w:10.0) between AGTCCACCAC...GGATGACAGA:W5(V549_D-1) and C:W-1(V664_D-1) -removing vertex C:W-1(V664_D-1) was concatenated into AGTCCACCAC...GATGACAGAC:W5(V549_D-1) -Want to move edge Edge(664->665,w:8.0)(C:W-1(V664_D-1)->T:W-1(V665_D-1)) to (AGTCCACCAC...GATGACAGAC:W5(V549_D-1)->T:W-1(V665_D-1) - adding edge: AGTCCACCAC...GATGACAGAC:W5(V549_D-1) to T:W-1(V665_D-1) -removing edge Edge(664->665,w:8.0)(C:W-1(V664_D-1)->T:W-1(V665_D-1)) -removing edge Edge(549->664,w:10.0)(AGTCCACCAC...GATGACAGAC:W5(V549_D-1)->C:W-1(V664_D-1)) -Found potential edge: Edge(549->665,w:8.0) between AGTCCACCAC...GATGACAGAC:W5(V549_D-1) and T:W-1(V665_D-1) -removing vertex T:W-1(V665_D-1) was concatenated into AGTCCACCAC...ATGACAGACT:W5(V549_D-1) -Want to move edge Edge(665->666,w:8.0)(T:W-1(V665_D-1)->C:W-1(V666_D-1)) to (AGTCCACCAC...ATGACAGACT:W5(V549_D-1)->C:W-1(V666_D-1) - adding edge: AGTCCACCAC...ATGACAGACT:W5(V549_D-1) to C:W-1(V666_D-1) -removing edge Edge(665->666,w:8.0)(T:W-1(V665_D-1)->C:W-1(V666_D-1)) -removing edge Edge(549->665,w:8.0)(AGTCCACCAC...ATGACAGACT:W5(V549_D-1)->T:W-1(V665_D-1)) -Found potential edge: Edge(549->666,w:8.0) between AGTCCACCAC...ATGACAGACT:W5(V549_D-1) and C:W-1(V666_D-1) -removing vertex C:W-1(V666_D-1) was concatenated into AGTCCACCAC...TGACAGACTC:W5(V549_D-1) -Want to move edge Edge(666->667,w:8.0)(C:W-1(V666_D-1)->T:W-1(V667_D-1)) to (AGTCCACCAC...TGACAGACTC:W5(V549_D-1)->T:W-1(V667_D-1) - adding edge: AGTCCACCAC...TGACAGACTC:W5(V549_D-1) to T:W-1(V667_D-1) -removing edge Edge(666->667,w:8.0)(C:W-1(V666_D-1)->T:W-1(V667_D-1)) -removing edge Edge(549->666,w:8.0)(AGTCCACCAC...TGACAGACTC:W5(V549_D-1)->C:W-1(V666_D-1)) -Found potential edge: Edge(549->667,w:8.0) between AGTCCACCAC...TGACAGACTC:W5(V549_D-1) and T:W-1(V667_D-1) -removing vertex T:W-1(V667_D-1) was concatenated into AGTCCACCAC...GACAGACTCT:W5(V549_D-1) -Want to move edge Edge(667->668,w:8.0)(T:W-1(V667_D-1)->C:W-1(V668_D-1)) to (AGTCCACCAC...GACAGACTCT:W5(V549_D-1)->C:W-1(V668_D-1) - adding edge: AGTCCACCAC...GACAGACTCT:W5(V549_D-1) to C:W-1(V668_D-1) -removing edge Edge(667->668,w:8.0)(T:W-1(V667_D-1)->C:W-1(V668_D-1)) -removing edge Edge(549->667,w:8.0)(AGTCCACCAC...GACAGACTCT:W5(V549_D-1)->T:W-1(V667_D-1)) -Found potential edge: Edge(549->668,w:8.0) between AGTCCACCAC...GACAGACTCT:W5(V549_D-1) and C:W-1(V668_D-1) -removing vertex C:W-1(V668_D-1) was concatenated into AGTCCACCAC...ACAGACTCTC:W5(V549_D-1) -Want to move edge Edge(668->669,w:8.0)(C:W-1(V668_D-1)->T:W-1(V669_D-1)) to (AGTCCACCAC...ACAGACTCTC:W5(V549_D-1)->T:W-1(V669_D-1) - adding edge: AGTCCACCAC...ACAGACTCTC:W5(V549_D-1) to T:W-1(V669_D-1) -removing edge Edge(668->669,w:8.0)(C:W-1(V668_D-1)->T:W-1(V669_D-1)) -removing edge Edge(549->668,w:8.0)(AGTCCACCAC...ACAGACTCTC:W5(V549_D-1)->C:W-1(V668_D-1)) -Found potential edge: Edge(549->669,w:8.0) between AGTCCACCAC...ACAGACTCTC:W5(V549_D-1) and T:W-1(V669_D-1) -removing vertex T:W-1(V669_D-1) was concatenated into AGTCCACCAC...CAGACTCTCT:W5(V549_D-1) -Want to move edge Edge(669->670,w:8.0)(T:W-1(V669_D-1)->A:W-1(V670_D-1)) to (AGTCCACCAC...CAGACTCTCT:W5(V549_D-1)->A:W-1(V670_D-1) - adding edge: AGTCCACCAC...CAGACTCTCT:W5(V549_D-1) to A:W-1(V670_D-1) -removing edge Edge(669->670,w:8.0)(T:W-1(V669_D-1)->A:W-1(V670_D-1)) -removing edge Edge(549->669,w:8.0)(AGTCCACCAC...CAGACTCTCT:W5(V549_D-1)->T:W-1(V669_D-1)) -Found potential edge: Edge(549->670,w:8.0) between AGTCCACCAC...CAGACTCTCT:W5(V549_D-1) and A:W-1(V670_D-1) -removing vertex A:W-1(V670_D-1) was concatenated into AGTCCACCAC...AGACTCTCTA:W5(V549_D-1) -Want to move edge Edge(670->671,w:8.0)(A:W-1(V670_D-1)->A:W-1(V671_D-1)) to (AGTCCACCAC...AGACTCTCTA:W5(V549_D-1)->A:W-1(V671_D-1) - adding edge: AGTCCACCAC...AGACTCTCTA:W5(V549_D-1) to A:W-1(V671_D-1) -removing edge Edge(670->671,w:8.0)(A:W-1(V670_D-1)->A:W-1(V671_D-1)) -removing edge Edge(549->670,w:8.0)(AGTCCACCAC...AGACTCTCTA:W5(V549_D-1)->A:W-1(V670_D-1)) -Found potential edge: Edge(549->671,w:8.0) between AGTCCACCAC...AGACTCTCTA:W5(V549_D-1) and A:W-1(V671_D-1) -removing vertex A:W-1(V671_D-1) was concatenated into AGTCCACCAC...GACTCTCTAA:W5(V549_D-1) -Want to move edge Edge(671->672,w:8.0)(A:W-1(V671_D-1)->G:W-1(V672_D-1)) to (AGTCCACCAC...GACTCTCTAA:W5(V549_D-1)->G:W-1(V672_D-1) - adding edge: AGTCCACCAC...GACTCTCTAA:W5(V549_D-1) to G:W-1(V672_D-1) -removing edge Edge(671->672,w:8.0)(A:W-1(V671_D-1)->G:W-1(V672_D-1)) -removing edge Edge(549->671,w:8.0)(AGTCCACCAC...GACTCTCTAA:W5(V549_D-1)->A:W-1(V671_D-1)) -Found potential edge: Edge(549->672,w:8.0) between AGTCCACCAC...GACTCTCTAA:W5(V549_D-1) and G:W-1(V672_D-1) -removing vertex G:W-1(V672_D-1) was concatenated into AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1) -Want to move edge Edge(672->673,w:8.0)(G:W-1(V672_D-1)->G:W-1(V673_D-1)) to (AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1)->G:W-1(V673_D-1) - adding edge: AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1) to G:W-1(V673_D-1) -removing edge Edge(672->673,w:8.0)(G:W-1(V672_D-1)->G:W-1(V673_D-1)) -removing edge Edge(549->672,w:8.0)(AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1)->G:W-1(V672_D-1)) -Found potential edge: Edge(549->673,w:8.0) between AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1) and G:W-1(V673_D-1) -removing vertex G:W-1(V673_D-1) was concatenated into AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1) -Want to move edge Edge(673->674,w:8.0)(G:W-1(V673_D-1)->G:W-1(V674_D-1)) to (AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1)->G:W-1(V674_D-1) - adding edge: AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1) to G:W-1(V674_D-1) -removing edge Edge(673->674,w:8.0)(G:W-1(V673_D-1)->G:W-1(V674_D-1)) -removing edge Edge(549->673,w:8.0)(AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1)->G:W-1(V673_D-1)) -Found potential edge: Edge(549->674,w:8.0) between AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1) and G:W-1(V674_D-1) -removing vertex G:W-1(V674_D-1) was concatenated into AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1) -Want to move edge Edge(674->675,w:8.0)(G:W-1(V674_D-1)->A:W-1(V675_D-1)) to (AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1)->A:W-1(V675_D-1) - adding edge: AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1) to A:W-1(V675_D-1) -removing edge Edge(674->675,w:8.0)(G:W-1(V674_D-1)->A:W-1(V675_D-1)) -removing edge Edge(549->674,w:8.0)(AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1)->G:W-1(V674_D-1)) -Found potential edge: Edge(549->675,w:8.0) between AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1) and A:W-1(V675_D-1) -removing vertex A:W-1(V675_D-1) was concatenated into AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1) -Want to move edge Edge(675->676,w:8.0)(A:W-1(V675_D-1)->C:W-1(V676_D-1)) to (AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1)->C:W-1(V676_D-1) - adding edge: AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1) to C:W-1(V676_D-1) -removing edge Edge(675->676,w:8.0)(A:W-1(V675_D-1)->C:W-1(V676_D-1)) -removing edge Edge(549->675,w:8.0)(AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1)->A:W-1(V675_D-1)) -Found potential edge: Edge(549->676,w:8.0) between AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1) and C:W-1(V676_D-1) -removing vertex C:W-1(V676_D-1) was concatenated into AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1) -Want to move edge Edge(676->677,w:8.0)(C:W-1(V676_D-1)->A:W-1(V677_D-1)) to (AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1)->A:W-1(V677_D-1) - adding edge: AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1) to A:W-1(V677_D-1) -removing edge Edge(676->677,w:8.0)(C:W-1(V676_D-1)->A:W-1(V677_D-1)) -removing edge Edge(549->676,w:8.0)(AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1)->C:W-1(V676_D-1)) -Found potential edge: Edge(549->677,w:8.0) between AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1) and A:W-1(V677_D-1) -removing vertex A:W-1(V677_D-1) was concatenated into AGTCCACCAC...CTAAGGGACA:W5(V549_D-1) -Want to move edge Edge(677->678,w:8.0)(A:W-1(V677_D-1)->T:W-1(V678_D-1)) to (AGTCCACCAC...CTAAGGGACA:W5(V549_D-1)->T:W-1(V678_D-1) - adding edge: AGTCCACCAC...CTAAGGGACA:W5(V549_D-1) to T:W-1(V678_D-1) -removing edge Edge(677->678,w:8.0)(A:W-1(V677_D-1)->T:W-1(V678_D-1)) -removing edge Edge(549->677,w:8.0)(AGTCCACCAC...CTAAGGGACA:W5(V549_D-1)->A:W-1(V677_D-1)) -Found potential edge: Edge(549->678,w:8.0) between AGTCCACCAC...CTAAGGGACA:W5(V549_D-1) and T:W-1(V678_D-1) -removing vertex T:W-1(V678_D-1) was concatenated into AGTCCACCAC...TAAGGGACAT:W5(V549_D-1) -Want to move edge Edge(678->679,w:8.0)(T:W-1(V678_D-1)->A:W-1(V679_D-1)) to (AGTCCACCAC...TAAGGGACAT:W5(V549_D-1)->A:W-1(V679_D-1) - adding edge: AGTCCACCAC...TAAGGGACAT:W5(V549_D-1) to A:W-1(V679_D-1) -removing edge Edge(678->679,w:8.0)(T:W-1(V678_D-1)->A:W-1(V679_D-1)) -removing edge Edge(549->678,w:8.0)(AGTCCACCAC...TAAGGGACAT:W5(V549_D-1)->T:W-1(V678_D-1)) -Found potential edge: Edge(549->679,w:8.0) between AGTCCACCAC...TAAGGGACAT:W5(V549_D-1) and A:W-1(V679_D-1) -removing vertex A:W-1(V679_D-1) was concatenated into AGTCCACCAC...AAGGGACATA:W5(V549_D-1) -Want to move edge Edge(679->680,w:8.0)(A:W-1(V679_D-1)->T:W-1(V680_D-1)) to (AGTCCACCAC...AAGGGACATA:W5(V549_D-1)->T:W-1(V680_D-1) - adding edge: AGTCCACCAC...AAGGGACATA:W5(V549_D-1) to T:W-1(V680_D-1) -removing edge Edge(679->680,w:8.0)(A:W-1(V679_D-1)->T:W-1(V680_D-1)) -removing edge Edge(549->679,w:8.0)(AGTCCACCAC...AAGGGACATA:W5(V549_D-1)->A:W-1(V679_D-1)) -Found potential edge: Edge(549->680,w:8.0) between AGTCCACCAC...AAGGGACATA:W5(V549_D-1) and T:W-1(V680_D-1) -removing vertex T:W-1(V680_D-1) was concatenated into AGTCCACCAC...AGGGACATAT:W5(V549_D-1) -Want to move edge Edge(680->681,w:10.0)(T:W-1(V680_D-1)->G:W-1(V681_D-1)) to (AGTCCACCAC...AGGGACATAT:W5(V549_D-1)->G:W-1(V681_D-1) - adding edge: AGTCCACCAC...AGGGACATAT:W5(V549_D-1) to G:W-1(V681_D-1) -removing edge Edge(680->681,w:10.0)(T:W-1(V680_D-1)->G:W-1(V681_D-1)) -removing edge Edge(549->680,w:8.0)(AGTCCACCAC...AGGGACATAT:W5(V549_D-1)->T:W-1(V680_D-1)) -Found potential edge: Edge(549->681,w:10.0) between AGTCCACCAC...AGGGACATAT:W5(V549_D-1) and G:W-1(V681_D-1) -removing vertex G:W-1(V681_D-1) was concatenated into AGTCCACCAC...GGGACATATG:W6(V549_D-1) -Want to move edge Edge(681->682,w:10.0)(G:W-1(V681_D-1)->G:W-1(V682_D-1)) to (AGTCCACCAC...GGGACATATG:W6(V549_D-1)->G:W-1(V682_D-1) - adding edge: AGTCCACCAC...GGGACATATG:W6(V549_D-1) to G:W-1(V682_D-1) -removing edge Edge(681->682,w:10.0)(G:W-1(V681_D-1)->G:W-1(V682_D-1)) -removing edge Edge(549->681,w:10.0)(AGTCCACCAC...GGGACATATG:W6(V549_D-1)->G:W-1(V681_D-1)) -Found potential edge: Edge(549->682,w:10.0) between AGTCCACCAC...GGGACATATG:W6(V549_D-1) and G:W-1(V682_D-1) -removing vertex G:W-1(V682_D-1) was concatenated into AGTCCACCAC...GGACATATGG:W6(V549_D-1) -Want to move edge Edge(682->683,w:10.0)(G:W-1(V682_D-1)->G:W-1(V683_D-1)) to (AGTCCACCAC...GGACATATGG:W6(V549_D-1)->G:W-1(V683_D-1) - adding edge: AGTCCACCAC...GGACATATGG:W6(V549_D-1) to G:W-1(V683_D-1) -removing edge Edge(682->683,w:10.0)(G:W-1(V682_D-1)->G:W-1(V683_D-1)) -removing edge Edge(549->682,w:10.0)(AGTCCACCAC...GGACATATGG:W6(V549_D-1)->G:W-1(V682_D-1)) -Found potential edge: Edge(549->683,w:10.0) between AGTCCACCAC...GGACATATGG:W6(V549_D-1) and G:W-1(V683_D-1) -removing vertex G:W-1(V683_D-1) was concatenated into AGTCCACCAC...GACATATGGG:W6(V549_D-1) -Want to move edge Edge(683->684,w:8.0)(G:W-1(V683_D-1)->A:W-1(V684_D-1)) to (AGTCCACCAC...GACATATGGG:W6(V549_D-1)->A:W-1(V684_D-1) - adding edge: AGTCCACCAC...GACATATGGG:W6(V549_D-1) to A:W-1(V684_D-1) -removing edge Edge(683->684,w:8.0)(G:W-1(V683_D-1)->A:W-1(V684_D-1)) -removing edge Edge(549->683,w:10.0)(AGTCCACCAC...GACATATGGG:W6(V549_D-1)->G:W-1(V683_D-1)) -Found potential edge: Edge(549->684,w:8.0) between AGTCCACCAC...GACATATGGG:W6(V549_D-1) and A:W-1(V684_D-1) -removing vertex A:W-1(V684_D-1) was concatenated into AGTCCACCAC...ACATATGGGA:W6(V549_D-1) -Want to move edge Edge(684->685,w:8.0)(A:W-1(V684_D-1)->G:W-1(V685_D-1)) to (AGTCCACCAC...ACATATGGGA:W6(V549_D-1)->G:W-1(V685_D-1) - adding edge: AGTCCACCAC...ACATATGGGA:W6(V549_D-1) to G:W-1(V685_D-1) -removing edge Edge(684->685,w:8.0)(A:W-1(V684_D-1)->G:W-1(V685_D-1)) -removing edge Edge(549->684,w:8.0)(AGTCCACCAC...ACATATGGGA:W6(V549_D-1)->A:W-1(V684_D-1)) -Found potential edge: Edge(549->685,w:8.0) between AGTCCACCAC...ACATATGGGA:W6(V549_D-1) and G:W-1(V685_D-1) -removing vertex G:W-1(V685_D-1) was concatenated into AGTCCACCAC...CATATGGGAG:W6(V549_D-1) -Want to move edge Edge(685->686,w:8.0)(G:W-1(V685_D-1)->C:W-1(V686_D-1)) to (AGTCCACCAC...CATATGGGAG:W6(V549_D-1)->C:W-1(V686_D-1) - adding edge: AGTCCACCAC...CATATGGGAG:W6(V549_D-1) to C:W-1(V686_D-1) -removing edge Edge(685->686,w:8.0)(G:W-1(V685_D-1)->C:W-1(V686_D-1)) -removing edge Edge(549->685,w:8.0)(AGTCCACCAC...CATATGGGAG:W6(V549_D-1)->G:W-1(V685_D-1)) -Found potential edge: Edge(549->686,w:8.0) between AGTCCACCAC...CATATGGGAG:W6(V549_D-1) and C:W-1(V686_D-1) -removing vertex C:W-1(V686_D-1) was concatenated into AGTCCACCAC...ATATGGGAGC:W6(V549_D-1) -Want to move edge Edge(686->687,w:8.0)(C:W-1(V686_D-1)->T:W-1(V687_D-1)) to (AGTCCACCAC...ATATGGGAGC:W6(V549_D-1)->T:W-1(V687_D-1) - adding edge: AGTCCACCAC...ATATGGGAGC:W6(V549_D-1) to T:W-1(V687_D-1) -removing edge Edge(686->687,w:8.0)(C:W-1(V686_D-1)->T:W-1(V687_D-1)) -removing edge Edge(549->686,w:8.0)(AGTCCACCAC...ATATGGGAGC:W6(V549_D-1)->C:W-1(V686_D-1)) -Found potential edge: Edge(549->687,w:8.0) between AGTCCACCAC...ATATGGGAGC:W6(V549_D-1) and T:W-1(V687_D-1) -removing vertex T:W-1(V687_D-1) was concatenated into AGTCCACCAC...TATGGGAGCT:W6(V549_D-1) -Want to move edge Edge(687->688,w:8.0)(T:W-1(V687_D-1)->A:W-1(V688_D-1)) to (AGTCCACCAC...TATGGGAGCT:W6(V549_D-1)->A:W-1(V688_D-1) - adding edge: AGTCCACCAC...TATGGGAGCT:W6(V549_D-1) to A:W-1(V688_D-1) -removing edge Edge(687->688,w:8.0)(T:W-1(V687_D-1)->A:W-1(V688_D-1)) -removing edge Edge(549->687,w:8.0)(AGTCCACCAC...TATGGGAGCT:W6(V549_D-1)->T:W-1(V687_D-1)) -Found potential edge: Edge(549->688,w:8.0) between AGTCCACCAC...TATGGGAGCT:W6(V549_D-1) and A:W-1(V688_D-1) -removing vertex A:W-1(V688_D-1) was concatenated into AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1) -Want to move edge Edge(688->689,w:6.0)(A:W-1(V688_D-1)->C:W-1(V689_D-1)) to (AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1)->C:W-1(V689_D-1) - adding edge: AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1) to C:W-1(V689_D-1) -removing edge Edge(688->689,w:6.0)(A:W-1(V688_D-1)->C:W-1(V689_D-1)) -removing edge Edge(549->688,w:8.0)(AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1)->A:W-1(V688_D-1)) -Found potential edge: Edge(549->689,w:6.0) between AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1) and C:W-1(V689_D-1) -removing vertex C:W-1(V689_D-1) was concatenated into AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1) -Want to move edge Edge(689->690,w:6.0)(C:W-1(V689_D-1)->A:W-1(V690_D-1)) to (AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1)->A:W-1(V690_D-1) - adding edge: AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1) to A:W-1(V690_D-1) -removing edge Edge(689->690,w:6.0)(C:W-1(V689_D-1)->A:W-1(V690_D-1)) -removing edge Edge(549->689,w:6.0)(AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1)->C:W-1(V689_D-1)) -Found potential edge: Edge(549->690,w:6.0) between AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1) and A:W-1(V690_D-1) -removing vertex A:W-1(V690_D-1) was concatenated into AGTCCACCAC...GGGAGCTACA:W6(V549_D-1) -Want to move edge Edge(690->691,w:6.0)(A:W-1(V690_D-1)->T:W-1(V691_D-1)) to (AGTCCACCAC...GGGAGCTACA:W6(V549_D-1)->T:W-1(V691_D-1) - adding edge: AGTCCACCAC...GGGAGCTACA:W6(V549_D-1) to T:W-1(V691_D-1) -removing edge Edge(690->691,w:6.0)(A:W-1(V690_D-1)->T:W-1(V691_D-1)) -removing edge Edge(549->690,w:6.0)(AGTCCACCAC...GGGAGCTACA:W6(V549_D-1)->A:W-1(V690_D-1)) -Found potential edge: Edge(549->691,w:6.0) between AGTCCACCAC...GGGAGCTACA:W6(V549_D-1) and T:W-1(V691_D-1) -removing vertex T:W-1(V691_D-1) was concatenated into AGTCCACCAC...GGAGCTACAT:W6(V549_D-1) -Want to move edge Edge(691->692,w:4.0)(T:W-1(V691_D-1)->A:W-1(V692_D-1)) to (AGTCCACCAC...GGAGCTACAT:W6(V549_D-1)->A:W-1(V692_D-1) - adding edge: AGTCCACCAC...GGAGCTACAT:W6(V549_D-1) to A:W-1(V692_D-1) -removing edge Edge(691->692,w:4.0)(T:W-1(V691_D-1)->A:W-1(V692_D-1)) -removing edge Edge(549->691,w:6.0)(AGTCCACCAC...GGAGCTACAT:W6(V549_D-1)->T:W-1(V691_D-1)) -Found potential edge: Edge(549->692,w:4.0) between AGTCCACCAC...GGAGCTACAT:W6(V549_D-1) and A:W-1(V692_D-1) -removing vertex A:W-1(V692_D-1) was concatenated into AGTCCACCAC...GAGCTACATA:W6(V549_D-1) -Want to move edge Edge(692->693,w:4.0)(A:W-1(V692_D-1)->G:W-1(V693_D-1)) to (AGTCCACCAC...GAGCTACATA:W6(V549_D-1)->G:W-1(V693_D-1) - adding edge: AGTCCACCAC...GAGCTACATA:W6(V549_D-1) to G:W-1(V693_D-1) -removing edge Edge(692->693,w:4.0)(A:W-1(V692_D-1)->G:W-1(V693_D-1)) -removing edge Edge(549->692,w:4.0)(AGTCCACCAC...GAGCTACATA:W6(V549_D-1)->A:W-1(V692_D-1)) -Found potential edge: Edge(549->693,w:4.0) between AGTCCACCAC...GAGCTACATA:W6(V549_D-1) and G:W-1(V693_D-1) -removing vertex G:W-1(V693_D-1) was concatenated into AGTCCACCAC...AGCTACATAG:W6(V549_D-1) -Want to move edge Edge(693->694,w:4.0)(G:W-1(V693_D-1)->C:W-1(V694_D-1)) to (AGTCCACCAC...AGCTACATAG:W6(V549_D-1)->C:W-1(V694_D-1) - adding edge: AGTCCACCAC...AGCTACATAG:W6(V549_D-1) to C:W-1(V694_D-1) -removing edge Edge(693->694,w:4.0)(G:W-1(V693_D-1)->C:W-1(V694_D-1)) -removing edge Edge(549->693,w:4.0)(AGTCCACCAC...AGCTACATAG:W6(V549_D-1)->G:W-1(V693_D-1)) -Found potential edge: Edge(549->694,w:4.0) between AGTCCACCAC...AGCTACATAG:W6(V549_D-1) and C:W-1(V694_D-1) -removing vertex C:W-1(V694_D-1) was concatenated into AGTCCACCAC...GCTACATAGC:W6(V549_D-1) -Want to move edge Edge(694->695,w:4.0)(C:W-1(V694_D-1)->C:W-1(V695_D-1)) to (AGTCCACCAC...GCTACATAGC:W6(V549_D-1)->C:W-1(V695_D-1) - adding edge: AGTCCACCAC...GCTACATAGC:W6(V549_D-1) to C:W-1(V695_D-1) -removing edge Edge(694->695,w:4.0)(C:W-1(V694_D-1)->C:W-1(V695_D-1)) -removing edge Edge(549->694,w:4.0)(AGTCCACCAC...GCTACATAGC:W6(V549_D-1)->C:W-1(V694_D-1)) -Found potential edge: Edge(549->695,w:4.0) between AGTCCACCAC...GCTACATAGC:W6(V549_D-1) and C:W-1(V695_D-1) -removing vertex C:W-1(V695_D-1) was concatenated into AGTCCACCAC...CTACATAGCC:W6(V549_D-1) -Want to move edge Edge(695->696,w:4.0)(C:W-1(V695_D-1)->A:W-1(V696_D-1)) to (AGTCCACCAC...CTACATAGCC:W6(V549_D-1)->A:W-1(V696_D-1) - adding edge: AGTCCACCAC...CTACATAGCC:W6(V549_D-1) to A:W-1(V696_D-1) -removing edge Edge(695->696,w:4.0)(C:W-1(V695_D-1)->A:W-1(V696_D-1)) -removing edge Edge(549->695,w:4.0)(AGTCCACCAC...CTACATAGCC:W6(V549_D-1)->C:W-1(V695_D-1)) -Found potential edge: Edge(549->696,w:4.0) between AGTCCACCAC...CTACATAGCC:W6(V549_D-1) and A:W-1(V696_D-1) -removing vertex A:W-1(V696_D-1) was concatenated into AGTCCACCAC...TACATAGCCA:W6(V549_D-1) -Want to move edge Edge(696->697,w:6.0)(A:W-1(V696_D-1)->G:W-1(V697_D-1)) to (AGTCCACCAC...TACATAGCCA:W6(V549_D-1)->G:W-1(V697_D-1) - adding edge: AGTCCACCAC...TACATAGCCA:W6(V549_D-1) to G:W-1(V697_D-1) -removing edge Edge(696->697,w:6.0)(A:W-1(V696_D-1)->G:W-1(V697_D-1)) -removing edge Edge(549->696,w:4.0)(AGTCCACCAC...TACATAGCCA:W6(V549_D-1)->A:W-1(V696_D-1)) -Found potential edge: Edge(549->697,w:6.0) between AGTCCACCAC...TACATAGCCA:W6(V549_D-1) and G:W-1(V697_D-1) -removing vertex G:W-1(V697_D-1) was concatenated into AGTCCACCAC...ACATAGCCAG:W6(V549_D-1) -Want to move edge Edge(697->698,w:6.0)(G:W-1(V697_D-1)->C:W-1(V698_D-1)) to (AGTCCACCAC...ACATAGCCAG:W6(V549_D-1)->C:W-1(V698_D-1) - adding edge: AGTCCACCAC...ACATAGCCAG:W6(V549_D-1) to C:W-1(V698_D-1) -removing edge Edge(697->698,w:6.0)(G:W-1(V697_D-1)->C:W-1(V698_D-1)) -removing edge Edge(549->697,w:6.0)(AGTCCACCAC...ACATAGCCAG:W6(V549_D-1)->G:W-1(V697_D-1)) -Found potential edge: Edge(549->698,w:6.0) between AGTCCACCAC...ACATAGCCAG:W6(V549_D-1) and C:W-1(V698_D-1) -removing vertex C:W-1(V698_D-1) was concatenated into AGTCCACCAC...CATAGCCAGC:W6(V549_D-1) -Want to move edge Edge(698->699,w:6.0)(C:W-1(V698_D-1)->C:W-1(V699_D-1)) to (AGTCCACCAC...CATAGCCAGC:W6(V549_D-1)->C:W-1(V699_D-1) - adding edge: AGTCCACCAC...CATAGCCAGC:W6(V549_D-1) to C:W-1(V699_D-1) -removing edge Edge(698->699,w:6.0)(C:W-1(V698_D-1)->C:W-1(V699_D-1)) -removing edge Edge(549->698,w:6.0)(AGTCCACCAC...CATAGCCAGC:W6(V549_D-1)->C:W-1(V698_D-1)) -Found potential edge: Edge(549->699,w:6.0) between AGTCCACCAC...CATAGCCAGC:W6(V549_D-1) and C:W-1(V699_D-1) -removing vertex C:W-1(V699_D-1) was concatenated into AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1) -Want to move edge Edge(699->700,w:6.0)(C:W-1(V699_D-1)->C:W-1(V700_D-1)) to (AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1)->C:W-1(V700_D-1) - adding edge: AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1) to C:W-1(V700_D-1) -removing edge Edge(699->700,w:6.0)(C:W-1(V699_D-1)->C:W-1(V700_D-1)) -removing edge Edge(549->699,w:6.0)(AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1)->C:W-1(V699_D-1)) -Found potential edge: Edge(549->700,w:6.0) between AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1) and C:W-1(V700_D-1) -removing vertex C:W-1(V700_D-1) was concatenated into AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1) -Want to move edge Edge(700->701,w:6.0)(C:W-1(V700_D-1)->C:W-1(V701_D-1)) to (AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1)->C:W-1(V701_D-1) - adding edge: AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1) to C:W-1(V701_D-1) -removing edge Edge(700->701,w:6.0)(C:W-1(V700_D-1)->C:W-1(V701_D-1)) -removing edge Edge(549->700,w:6.0)(AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1)->C:W-1(V700_D-1)) -Found potential edge: Edge(549->701,w:6.0) between AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1) and C:W-1(V701_D-1) -removing vertex C:W-1(V701_D-1) was concatenated into AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1) -Want to move edge Edge(701->702,w:6.0)(C:W-1(V701_D-1)->G:W-1(V702_D-1)) to (AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1)->G:W-1(V702_D-1) - adding edge: AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1) to G:W-1(V702_D-1) -removing edge Edge(701->702,w:6.0)(C:W-1(V701_D-1)->G:W-1(V702_D-1)) -removing edge Edge(549->701,w:6.0)(AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1)->C:W-1(V701_D-1)) -Found potential edge: Edge(549->702,w:6.0) between AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1) and G:W-1(V702_D-1) -removing vertex G:W-1(V702_D-1) was concatenated into AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1) -Want to move edge Edge(702->703,w:6.0)(G:W-1(V702_D-1)->T:W-1(V703_D-1)) to (AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1)->T:W-1(V703_D-1) - adding edge: AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1) to T:W-1(V703_D-1) -removing edge Edge(702->703,w:6.0)(G:W-1(V702_D-1)->T:W-1(V703_D-1)) -removing edge Edge(549->702,w:6.0)(AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1)->G:W-1(V702_D-1)) -Found potential edge: Edge(549->703,w:6.0) between AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1) and T:W-1(V703_D-1) -removing vertex T:W-1(V703_D-1) was concatenated into AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1) -Want to move edge Edge(703->704,w:6.0)(T:W-1(V703_D-1)->G:W-1(V704_D-1)) to (AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1)->G:W-1(V704_D-1) - adding edge: AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1) to G:W-1(V704_D-1) -removing edge Edge(703->704,w:6.0)(T:W-1(V703_D-1)->G:W-1(V704_D-1)) -removing edge Edge(549->703,w:6.0)(AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1)->T:W-1(V703_D-1)) -Found potential edge: Edge(549->704,w:6.0) between AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1) and G:W-1(V704_D-1) -removing vertex G:W-1(V704_D-1) was concatenated into AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1) -Want to move edge Edge(704->705,w:6.0)(G:W-1(V704_D-1)->G:W-1(V705_D-1)) to (AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1)->G:W-1(V705_D-1) - adding edge: AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1) to G:W-1(V705_D-1) -removing edge Edge(704->705,w:6.0)(G:W-1(V704_D-1)->G:W-1(V705_D-1)) -removing edge Edge(549->704,w:6.0)(AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1)->G:W-1(V704_D-1)) -Found potential edge: Edge(549->705,w:6.0) between AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1) and G:W-1(V705_D-1) -removing vertex G:W-1(V705_D-1) was concatenated into AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1) -Want to move edge Edge(705->706,w:6.0)(G:W-1(V705_D-1)->A:W-1(V706_D-1)) to (AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1)->A:W-1(V706_D-1) - adding edge: AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1) to A:W-1(V706_D-1) -removing edge Edge(705->706,w:6.0)(G:W-1(V705_D-1)->A:W-1(V706_D-1)) -removing edge Edge(549->705,w:6.0)(AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1)->G:W-1(V705_D-1)) -Found potential edge: Edge(549->706,w:6.0) between AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1) and A:W-1(V706_D-1) -removing vertex A:W-1(V706_D-1) was concatenated into AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1) -Want to move edge Edge(706->707,w:6.0)(A:W-1(V706_D-1)->G:W-1(V707_D-1)) to (AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1)->G:W-1(V707_D-1) - adding edge: AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1) to G:W-1(V707_D-1) -removing edge Edge(706->707,w:6.0)(A:W-1(V706_D-1)->G:W-1(V707_D-1)) -removing edge Edge(549->706,w:6.0)(AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1)->A:W-1(V706_D-1)) -Found potential edge: Edge(549->707,w:6.0) between AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1) and G:W-1(V707_D-1) -removing vertex G:W-1(V707_D-1) was concatenated into AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1) -Want to move edge Edge(707->708,w:6.0)(G:W-1(V707_D-1)->G:W-1(V708_D-1)) to (AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1)->G:W-1(V708_D-1) - adding edge: AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1) to G:W-1(V708_D-1) -removing edge Edge(707->708,w:6.0)(G:W-1(V707_D-1)->G:W-1(V708_D-1)) -removing edge Edge(549->707,w:6.0)(AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1)->G:W-1(V707_D-1)) -Found potential edge: Edge(549->708,w:6.0) between AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1) and G:W-1(V708_D-1) -removing vertex G:W-1(V708_D-1) was concatenated into AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1) -Want to move edge Edge(708->709,w:6.0)(G:W-1(V708_D-1)->G:W-1(V709_D-1)) to (AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1)->G:W-1(V709_D-1) - adding edge: AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1) to G:W-1(V709_D-1) -removing edge Edge(708->709,w:6.0)(G:W-1(V708_D-1)->G:W-1(V709_D-1)) -removing edge Edge(549->708,w:6.0)(AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1)->G:W-1(V708_D-1)) -Found potential edge: Edge(549->709,w:6.0) between AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1) and G:W-1(V709_D-1) -removing vertex G:W-1(V709_D-1) was concatenated into AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1) -Want to move edge Edge(709->710,w:4.0)(G:W-1(V709_D-1)->A:W-1(V710_D-1)) to (AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1)->A:W-1(V710_D-1) - adding edge: AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1) to A:W-1(V710_D-1) -removing edge Edge(709->710,w:4.0)(G:W-1(V709_D-1)->A:W-1(V710_D-1)) -removing edge Edge(549->709,w:6.0)(AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1)->G:W-1(V709_D-1)) -Found potential edge: Edge(549->710,w:4.0) between AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1) and A:W-1(V710_D-1) -removing vertex A:W-1(V710_D-1) was concatenated into AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1) -Want to move edge Edge(710->711,w:4.0)(A:W-1(V710_D-1)->G:W-1(V711_D-1)) to (AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1)->G:W-1(V711_D-1) - adding edge: AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1) to G:W-1(V711_D-1) -removing edge Edge(710->711,w:4.0)(A:W-1(V710_D-1)->G:W-1(V711_D-1)) -removing edge Edge(549->710,w:4.0)(AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1)->A:W-1(V710_D-1)) -Found potential edge: Edge(549->711,w:4.0) between AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1) and G:W-1(V711_D-1) -removing vertex G:W-1(V711_D-1) was concatenated into AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1) -Want to move edge Edge(711->712,w:4.0)(G:W-1(V711_D-1)->C:W-1(V712_D-1)) to (AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1)->C:W-1(V712_D-1) - adding edge: AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1) to C:W-1(V712_D-1) -removing edge Edge(711->712,w:4.0)(G:W-1(V711_D-1)->C:W-1(V712_D-1)) -removing edge Edge(549->711,w:4.0)(AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1)->G:W-1(V711_D-1)) -Found potential edge: Edge(549->712,w:4.0) between AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1) and C:W-1(V712_D-1) -removing vertex C:W-1(V712_D-1) was concatenated into AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1) -Want to move edge Edge(712->713,w:4.0)(C:W-1(V712_D-1)->C:W-1(V713_D-1)) to (AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1)->C:W-1(V713_D-1) - adding edge: AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1) to C:W-1(V713_D-1) -removing edge Edge(712->713,w:4.0)(C:W-1(V712_D-1)->C:W-1(V713_D-1)) -removing edge Edge(549->712,w:4.0)(AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1)->C:W-1(V712_D-1)) -Found potential edge: Edge(549->713,w:4.0) between AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1) and C:W-1(V713_D-1) -removing vertex C:W-1(V713_D-1) was concatenated into AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1) -Want to move edge Edge(713->714,w:4.0)(C:W-1(V713_D-1)->A:W-1(V714_D-1)) to (AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1)->A:W-1(V714_D-1) - adding edge: AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1) to A:W-1(V714_D-1) -removing edge Edge(713->714,w:4.0)(C:W-1(V713_D-1)->A:W-1(V714_D-1)) -removing edge Edge(549->713,w:4.0)(AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1)->C:W-1(V713_D-1)) -Found potential edge: Edge(549->714,w:4.0) between AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1) and A:W-1(V714_D-1) -removing vertex A:W-1(V714_D-1) was concatenated into AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1) -Want to move edge Edge(714->715,w:4.0)(A:W-1(V714_D-1)->C:W-1(V715_D-1)) to (AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1)->C:W-1(V715_D-1) - adding edge: AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1) to C:W-1(V715_D-1) -removing edge Edge(714->715,w:4.0)(A:W-1(V714_D-1)->C:W-1(V715_D-1)) -removing edge Edge(549->714,w:4.0)(AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1)->A:W-1(V714_D-1)) -Found potential edge: Edge(549->715,w:4.0) between AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1) and C:W-1(V715_D-1) -removing vertex C:W-1(V715_D-1) was concatenated into AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1) -Want to move edge Edge(715->716,w:4.0)(C:W-1(V715_D-1)->C:W-1(V716_D-1)) to (AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1)->C:W-1(V716_D-1) - adding edge: AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1) to C:W-1(V716_D-1) -removing edge Edge(715->716,w:4.0)(C:W-1(V715_D-1)->C:W-1(V716_D-1)) -removing edge Edge(549->715,w:4.0)(AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1)->C:W-1(V715_D-1)) -Found potential edge: Edge(549->716,w:4.0) between AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1) and C:W-1(V716_D-1) -removing vertex C:W-1(V716_D-1) was concatenated into AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) -Want to move edge Edge(716->717,w:4.0)(C:W-1(V716_D-1)->A:W-1(V717_D-1)) to (AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)->A:W-1(V717_D-1) - adding edge: AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) to A:W-1(V717_D-1) -removing edge Edge(716->717,w:4.0)(C:W-1(V716_D-1)->A:W-1(V717_D-1)) -removing edge Edge(549->716,w:4.0)(AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)->C:W-1(V716_D-1)) -Found potential edge: Edge(717->718,w:6.0) between A:W-1(V717_D-1) and G:W-1(V718_D-1) -removing vertex G:W-1(V718_D-1) was concatenated into AG:W6(V717_D-1) -Want to move edge Edge(718->719,w:6.0)(G:W-1(V718_D-1)->C:W-1(V719_D-1)) to (AG:W6(V717_D-1)->C:W-1(V719_D-1) - adding edge: AG:W6(V717_D-1) to C:W-1(V719_D-1) -removing edge Edge(718->719,w:6.0)(G:W-1(V718_D-1)->C:W-1(V719_D-1)) -removing edge Edge(717->718,w:6.0)(AG:W6(V717_D-1)->G:W-1(V718_D-1)) -Found potential edge: Edge(717->719,w:6.0) between AG:W6(V717_D-1) and C:W-1(V719_D-1) -removing vertex C:W-1(V719_D-1) was concatenated into AGC:W6(V717_D-1) -Want to move edge Edge(719->720,w:6.0)(C:W-1(V719_D-1)->C:W-1(V720_D-1)) to (AGC:W6(V717_D-1)->C:W-1(V720_D-1) - adding edge: AGC:W6(V717_D-1) to C:W-1(V720_D-1) -removing edge Edge(719->720,w:6.0)(C:W-1(V719_D-1)->C:W-1(V720_D-1)) -removing edge Edge(717->719,w:6.0)(AGC:W6(V717_D-1)->C:W-1(V719_D-1)) -Found potential edge: Edge(717->720,w:6.0) between AGC:W6(V717_D-1) and C:W-1(V720_D-1) -removing vertex C:W-1(V720_D-1) was concatenated into AGCC:W6(V717_D-1) -Want to move edge Edge(720->721,w:6.0)(C:W-1(V720_D-1)->A:W-1(V721_D-1)) to (AGCC:W6(V717_D-1)->A:W-1(V721_D-1) - adding edge: AGCC:W6(V717_D-1) to A:W-1(V721_D-1) -removing edge Edge(720->721,w:6.0)(C:W-1(V720_D-1)->A:W-1(V721_D-1)) -removing edge Edge(717->720,w:6.0)(AGCC:W6(V717_D-1)->C:W-1(V720_D-1)) -Found potential edge: Edge(717->721,w:6.0) between AGCC:W6(V717_D-1) and A:W-1(V721_D-1) -removing vertex A:W-1(V721_D-1) was concatenated into AGCCA:W6(V717_D-1) -Want to move edge Edge(721->722,w:6.0)(A:W-1(V721_D-1)->C:W-1(V722_D-1)) to (AGCCA:W6(V717_D-1)->C:W-1(V722_D-1) - adding edge: AGCCA:W6(V717_D-1) to C:W-1(V722_D-1) -removing edge Edge(721->722,w:6.0)(A:W-1(V721_D-1)->C:W-1(V722_D-1)) -removing edge Edge(717->721,w:6.0)(AGCCA:W6(V717_D-1)->A:W-1(V721_D-1)) -Found potential edge: Edge(717->722,w:6.0) between AGCCA:W6(V717_D-1) and C:W-1(V722_D-1) -removing vertex C:W-1(V722_D-1) was concatenated into AGCCAC:W6(V717_D-1) -Want to move edge Edge(722->723,w:6.0)(C:W-1(V722_D-1)->A:W-1(V723_D-1)) to (AGCCAC:W6(V717_D-1)->A:W-1(V723_D-1) - adding edge: AGCCAC:W6(V717_D-1) to A:W-1(V723_D-1) -removing edge Edge(722->723,w:6.0)(C:W-1(V722_D-1)->A:W-1(V723_D-1)) -removing edge Edge(717->722,w:6.0)(AGCCAC:W6(V717_D-1)->C:W-1(V722_D-1)) -Found potential edge: Edge(717->723,w:6.0) between AGCCAC:W6(V717_D-1) and A:W-1(V723_D-1) -removing vertex A:W-1(V723_D-1) was concatenated into AGCCACA:W6(V717_D-1) -Want to move edge Edge(723->724,w:6.0)(A:W-1(V723_D-1)->G:W-1(V724_D-1)) to (AGCCACA:W6(V717_D-1)->G:W-1(V724_D-1) - adding edge: AGCCACA:W6(V717_D-1) to G:W-1(V724_D-1) -removing edge Edge(723->724,w:6.0)(A:W-1(V723_D-1)->G:W-1(V724_D-1)) -removing edge Edge(717->723,w:6.0)(AGCCACA:W6(V717_D-1)->A:W-1(V723_D-1)) -Found potential edge: Edge(717->724,w:6.0) between AGCCACA:W6(V717_D-1) and G:W-1(V724_D-1) -removing vertex G:W-1(V724_D-1) was concatenated into AGCCACAG:W6(V717_D-1) -Want to move edge Edge(724->725,w:6.0)(G:W-1(V724_D-1)->G:W-1(V725_D-1)) to (AGCCACAG:W6(V717_D-1)->G:W-1(V725_D-1) - adding edge: AGCCACAG:W6(V717_D-1) to G:W-1(V725_D-1) -removing edge Edge(724->725,w:6.0)(G:W-1(V724_D-1)->G:W-1(V725_D-1)) -removing edge Edge(717->724,w:6.0)(AGCCACAG:W6(V717_D-1)->G:W-1(V724_D-1)) -Found potential edge: Edge(717->725,w:6.0) between AGCCACAG:W6(V717_D-1) and G:W-1(V725_D-1) -removing vertex G:W-1(V725_D-1) was concatenated into AGCCACAGG:W6(V717_D-1) -Want to move edge Edge(725->726,w:6.0)(G:W-1(V725_D-1)->T:W-1(V726_D-1)) to (AGCCACAGG:W6(V717_D-1)->T:W-1(V726_D-1) - adding edge: AGCCACAGG:W6(V717_D-1) to T:W-1(V726_D-1) -removing edge Edge(725->726,w:6.0)(G:W-1(V725_D-1)->T:W-1(V726_D-1)) -removing edge Edge(717->725,w:6.0)(AGCCACAGG:W6(V717_D-1)->G:W-1(V725_D-1)) -Found potential edge: Edge(717->726,w:6.0) between AGCCACAGG:W6(V717_D-1) and T:W-1(V726_D-1) -removing vertex T:W-1(V726_D-1) was concatenated into AGCCACAGGT:W6(V717_D-1) -Want to move edge Edge(726->727,w:6.0)(T:W-1(V726_D-1)->A:W-1(V727_D-1)) to (AGCCACAGGT:W6(V717_D-1)->A:W-1(V727_D-1) - adding edge: AGCCACAGGT:W6(V717_D-1) to A:W-1(V727_D-1) -removing edge Edge(726->727,w:6.0)(T:W-1(V726_D-1)->A:W-1(V727_D-1)) -removing edge Edge(717->726,w:6.0)(AGCCACAGGT:W6(V717_D-1)->T:W-1(V726_D-1)) -Found potential edge: Edge(717->727,w:6.0) between AGCCACAGGT:W6(V717_D-1) and A:W-1(V727_D-1) -removing vertex A:W-1(V727_D-1) was concatenated into AGCCACAGGTA:W6(V717_D-1) -Want to move edge Edge(727->728,w:6.0)(A:W-1(V727_D-1)->C:W-1(V728_D-1)) to (AGCCACAGGTA:W6(V717_D-1)->C:W-1(V728_D-1) - adding edge: AGCCACAGGTA:W6(V717_D-1) to C:W-1(V728_D-1) -removing edge Edge(727->728,w:6.0)(A:W-1(V727_D-1)->C:W-1(V728_D-1)) -removing edge Edge(717->727,w:6.0)(AGCCACAGGTA:W6(V717_D-1)->A:W-1(V727_D-1)) -Found potential edge: Edge(717->728,w:6.0) between AGCCACAGGTA:W6(V717_D-1) and C:W-1(V728_D-1) -removing vertex C:W-1(V728_D-1) was concatenated into AGCCACAGGTAC:W6(V717_D-1) -Want to move edge Edge(728->729,w:6.0)(C:W-1(V728_D-1)->C:W-1(V729_D-1)) to (AGCCACAGGTAC:W6(V717_D-1)->C:W-1(V729_D-1) - adding edge: AGCCACAGGTAC:W6(V717_D-1) to C:W-1(V729_D-1) -removing edge Edge(728->729,w:6.0)(C:W-1(V728_D-1)->C:W-1(V729_D-1)) -removing edge Edge(717->728,w:6.0)(AGCCACAGGTAC:W6(V717_D-1)->C:W-1(V728_D-1)) -Found potential edge: Edge(717->729,w:6.0) between AGCCACAGGTAC:W6(V717_D-1) and C:W-1(V729_D-1) -removing vertex C:W-1(V729_D-1) was concatenated into AGCCACAGGTACC:W6(V717_D-1) -Want to move edge Edge(729->730,w:6.0)(C:W-1(V729_D-1)->T:W-1(V730_D-1)) to (AGCCACAGGTACC:W6(V717_D-1)->T:W-1(V730_D-1) - adding edge: AGCCACAGGTACC:W6(V717_D-1) to T:W-1(V730_D-1) -removing edge Edge(729->730,w:6.0)(C:W-1(V729_D-1)->T:W-1(V730_D-1)) -removing edge Edge(717->729,w:6.0)(AGCCACAGGTACC:W6(V717_D-1)->C:W-1(V729_D-1)) -Found potential edge: Edge(717->730,w:6.0) between AGCCACAGGTACC:W6(V717_D-1) and T:W-1(V730_D-1) -removing vertex T:W-1(V730_D-1) was concatenated into AGCCACAGGTACCT:W6(V717_D-1) -Want to move edge Edge(730->731,w:6.0)(T:W-1(V730_D-1)->G:W-1(V731_D-1)) to (AGCCACAGGTACCT:W6(V717_D-1)->G:W-1(V731_D-1) - adding edge: AGCCACAGGTACCT:W6(V717_D-1) to G:W-1(V731_D-1) -removing edge Edge(730->731,w:6.0)(T:W-1(V730_D-1)->G:W-1(V731_D-1)) -removing edge Edge(717->730,w:6.0)(AGCCACAGGTACCT:W6(V717_D-1)->T:W-1(V730_D-1)) -Found potential edge: Edge(717->731,w:6.0) between AGCCACAGGTACCT:W6(V717_D-1) and G:W-1(V731_D-1) -removing vertex G:W-1(V731_D-1) was concatenated into AGCCACAGGTACCTG:W6(V717_D-1) -Want to move edge Edge(731->732,w:6.0)(G:W-1(V731_D-1)->A:W-1(V732_D-1)) to (AGCCACAGGTACCTG:W6(V717_D-1)->A:W-1(V732_D-1) - adding edge: AGCCACAGGTACCTG:W6(V717_D-1) to A:W-1(V732_D-1) -removing edge Edge(731->732,w:6.0)(G:W-1(V731_D-1)->A:W-1(V732_D-1)) -removing edge Edge(717->731,w:6.0)(AGCCACAGGTACCTG:W6(V717_D-1)->G:W-1(V731_D-1)) -Found potential edge: Edge(717->732,w:6.0) between AGCCACAGGTACCTG:W6(V717_D-1) and A:W-1(V732_D-1) -removing vertex A:W-1(V732_D-1) was concatenated into AGCCACAGGTACCTGA:W6(V717_D-1) -Want to move edge Edge(732->733,w:6.0)(A:W-1(V732_D-1)->T:W-1(V733_D-1)) to (AGCCACAGGTACCTGA:W6(V717_D-1)->T:W-1(V733_D-1) - adding edge: AGCCACAGGTACCTGA:W6(V717_D-1) to T:W-1(V733_D-1) -removing edge Edge(732->733,w:6.0)(A:W-1(V732_D-1)->T:W-1(V733_D-1)) -removing edge Edge(717->732,w:6.0)(AGCCACAGGTACCTGA:W6(V717_D-1)->A:W-1(V732_D-1)) -Found potential edge: Edge(717->733,w:6.0) between AGCCACAGGTACCTGA:W6(V717_D-1) and T:W-1(V733_D-1) -removing vertex T:W-1(V733_D-1) was concatenated into AGCCACAGGTACCTGAT:W6(V717_D-1) -Want to move edge Edge(733->734,w:6.0)(T:W-1(V733_D-1)->G:W-1(V734_D-1)) to (AGCCACAGGTACCTGAT:W6(V717_D-1)->G:W-1(V734_D-1) - adding edge: AGCCACAGGTACCTGAT:W6(V717_D-1) to G:W-1(V734_D-1) -removing edge Edge(733->734,w:6.0)(T:W-1(V733_D-1)->G:W-1(V734_D-1)) -removing edge Edge(717->733,w:6.0)(AGCCACAGGTACCTGAT:W6(V717_D-1)->T:W-1(V733_D-1)) -Found potential edge: Edge(717->734,w:6.0) between AGCCACAGGTACCTGAT:W6(V717_D-1) and G:W-1(V734_D-1) -removing vertex G:W-1(V734_D-1) was concatenated into AGCCACAGGTACCTGATG:W6(V717_D-1) -Want to move edge Edge(734->735,w:6.0)(G:W-1(V734_D-1)->G:W-1(V735_D-1)) to (AGCCACAGGTACCTGATG:W6(V717_D-1)->G:W-1(V735_D-1) - adding edge: AGCCACAGGTACCTGATG:W6(V717_D-1) to G:W-1(V735_D-1) -removing edge Edge(734->735,w:6.0)(G:W-1(V734_D-1)->G:W-1(V735_D-1)) -removing edge Edge(717->734,w:6.0)(AGCCACAGGTACCTGATG:W6(V717_D-1)->G:W-1(V734_D-1)) -Found potential edge: Edge(717->735,w:6.0) between AGCCACAGGTACCTGATG:W6(V717_D-1) and G:W-1(V735_D-1) -removing vertex G:W-1(V735_D-1) was concatenated into AGCCACAGGTACCTGATGG:W6(V717_D-1) -Want to move edge Edge(735->736,w:6.0)(G:W-1(V735_D-1)->A:W-1(V736_D-1)) to (AGCCACAGGTACCTGATGG:W6(V717_D-1)->A:W-1(V736_D-1) - adding edge: AGCCACAGGTACCTGATGG:W6(V717_D-1) to A:W-1(V736_D-1) -removing edge Edge(735->736,w:6.0)(G:W-1(V735_D-1)->A:W-1(V736_D-1)) -removing edge Edge(717->735,w:6.0)(AGCCACAGGTACCTGATGG:W6(V717_D-1)->G:W-1(V735_D-1)) -Found potential edge: Edge(717->736,w:6.0) between AGCCACAGGTACCTGATGG:W6(V717_D-1) and A:W-1(V736_D-1) -removing vertex A:W-1(V736_D-1) was concatenated into AGCCACAGGTACCTGATGGA:W6(V717_D-1) -Want to move edge Edge(736->737,w:6.0)(A:W-1(V736_D-1)->A:W-1(V737_D-1)) to (AGCCACAGGTACCTGATGGA:W6(V717_D-1)->A:W-1(V737_D-1) - adding edge: AGCCACAGGTACCTGATGGA:W6(V717_D-1) to A:W-1(V737_D-1) -removing edge Edge(736->737,w:6.0)(A:W-1(V736_D-1)->A:W-1(V737_D-1)) -removing edge Edge(717->736,w:6.0)(AGCCACAGGTACCTGATGGA:W6(V717_D-1)->A:W-1(V736_D-1)) -Found potential edge: Edge(717->737,w:6.0) between AGCCACAGGTACCTGATGGA:W6(V717_D-1) and A:W-1(V737_D-1) -removing vertex A:W-1(V737_D-1) was concatenated into AGCCACAGGTACCTGATGGAA:W6(V717_D-1) -Want to move edge Edge(737->738,w:6.0)(A:W-1(V737_D-1)->A:W-1(V738_D-1)) to (AGCCACAGGTACCTGATGGAA:W6(V717_D-1)->A:W-1(V738_D-1) - adding edge: AGCCACAGGTACCTGATGGAA:W6(V717_D-1) to A:W-1(V738_D-1) -removing edge Edge(737->738,w:6.0)(A:W-1(V737_D-1)->A:W-1(V738_D-1)) -removing edge Edge(717->737,w:6.0)(AGCCACAGGTACCTGATGGAA:W6(V717_D-1)->A:W-1(V737_D-1)) -Found potential edge: Edge(717->738,w:6.0) between AGCCACAGGTACCTGATGGAA:W6(V717_D-1) and A:W-1(V738_D-1) -removing vertex A:W-1(V738_D-1) was concatenated into AGCCACAGGTACCTGATGGAAA:W6(V717_D-1) -Want to move edge Edge(738->739,w:6.0)(A:W-1(V738_D-1)->T:W-1(V739_D-1)) to (AGCCACAGGTACCTGATGGAAA:W6(V717_D-1)->T:W-1(V739_D-1) - adding edge: AGCCACAGGTACCTGATGGAAA:W6(V717_D-1) to T:W-1(V739_D-1) -removing edge Edge(738->739,w:6.0)(A:W-1(V738_D-1)->T:W-1(V739_D-1)) -removing edge Edge(717->738,w:6.0)(AGCCACAGGTACCTGATGGAAA:W6(V717_D-1)->A:W-1(V738_D-1)) -Found potential edge: Edge(717->739,w:6.0) between AGCCACAGGTACCTGATGGAAA:W6(V717_D-1) and T:W-1(V739_D-1) -removing vertex T:W-1(V739_D-1) was concatenated into AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1) -Want to move edge Edge(739->740,w:6.0)(T:W-1(V739_D-1)->G:W-1(V740_D-1)) to (AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1)->G:W-1(V740_D-1) - adding edge: AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1) to G:W-1(V740_D-1) -removing edge Edge(739->740,w:6.0)(T:W-1(V739_D-1)->G:W-1(V740_D-1)) -removing edge Edge(717->739,w:6.0)(AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1)->T:W-1(V739_D-1)) -Found potential edge: Edge(717->740,w:6.0) between AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1) and G:W-1(V740_D-1) -removing vertex G:W-1(V740_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1) -Want to move edge Edge(740->741,w:6.0)(G:W-1(V740_D-1)->C:W-1(V741_D-1)) to (AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1)->C:W-1(V741_D-1) - adding edge: AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1) to C:W-1(V741_D-1) -removing edge Edge(740->741,w:6.0)(G:W-1(V740_D-1)->C:W-1(V741_D-1)) -removing edge Edge(717->740,w:6.0)(AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1)->G:W-1(V740_D-1)) -Found potential edge: Edge(717->741,w:6.0) between AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1) and C:W-1(V741_D-1) -removing vertex C:W-1(V741_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1) -Want to move edge Edge(741->742,w:6.0)(C:W-1(V741_D-1)->C:W-1(V742_D-1)) to (AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1)->C:W-1(V742_D-1) - adding edge: AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1) to C:W-1(V742_D-1) -removing edge Edge(741->742,w:6.0)(C:W-1(V741_D-1)->C:W-1(V742_D-1)) -removing edge Edge(717->741,w:6.0)(AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1)->C:W-1(V741_D-1)) -Found potential edge: Edge(717->742,w:6.0) between AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1) and C:W-1(V742_D-1) -removing vertex C:W-1(V742_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1) -Want to move edge Edge(742->743,w:4.0)(C:W-1(V742_D-1)->G:W-1(V743_D-1)) to (AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1)->G:W-1(V743_D-1) - adding edge: AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1) to G:W-1(V743_D-1) -removing edge Edge(742->743,w:4.0)(C:W-1(V742_D-1)->G:W-1(V743_D-1)) -removing edge Edge(717->742,w:6.0)(AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1)->C:W-1(V742_D-1)) -Found potential edge: Edge(717->743,w:4.0) between AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1) and G:W-1(V743_D-1) -removing vertex G:W-1(V743_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1) -Want to move edge Edge(743->744,w:4.0)(G:W-1(V743_D-1)->G:W-1(V744_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1)->G:W-1(V744_D-1) - adding edge: AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1) to G:W-1(V744_D-1) -removing edge Edge(743->744,w:4.0)(G:W-1(V743_D-1)->G:W-1(V744_D-1)) -removing edge Edge(717->743,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1)->G:W-1(V743_D-1)) -Found potential edge: Edge(717->744,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1) and G:W-1(V744_D-1) -removing vertex G:W-1(V744_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1) -Want to move edge Edge(744->745,w:4.0)(G:W-1(V744_D-1)->C:W-1(V745_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1)->C:W-1(V745_D-1) - adding edge: AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1) to C:W-1(V745_D-1) -removing edge Edge(744->745,w:4.0)(G:W-1(V744_D-1)->C:W-1(V745_D-1)) -removing edge Edge(717->744,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1)->G:W-1(V744_D-1)) -Found potential edge: Edge(717->745,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1) and C:W-1(V745_D-1) -removing vertex C:W-1(V745_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1) -Want to move edge Edge(745->746,w:4.0)(C:W-1(V745_D-1)->T:W-1(V746_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1)->T:W-1(V746_D-1) - adding edge: AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1) to T:W-1(V746_D-1) -removing edge Edge(745->746,w:4.0)(C:W-1(V745_D-1)->T:W-1(V746_D-1)) -removing edge Edge(717->745,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1)->C:W-1(V745_D-1)) -Found potential edge: Edge(717->746,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1) and T:W-1(V746_D-1) -removing vertex T:W-1(V746_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1) -Want to move edge Edge(746->747,w:4.0)(T:W-1(V746_D-1)->C:W-1(V747_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1)->C:W-1(V747_D-1) - adding edge: AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1) to C:W-1(V747_D-1) -removing edge Edge(746->747,w:4.0)(T:W-1(V746_D-1)->C:W-1(V747_D-1)) -removing edge Edge(717->746,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1)->T:W-1(V746_D-1)) -Found potential edge: Edge(717->747,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1) and C:W-1(V747_D-1) -removing vertex C:W-1(V747_D-1) was concatenated into AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1) -Want to move edge Edge(747->748,w:4.0)(C:W-1(V747_D-1)->A:W-1(V748_D-1)) to (AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1)->A:W-1(V748_D-1) - adding edge: AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1) to A:W-1(V748_D-1) -removing edge Edge(747->748,w:4.0)(C:W-1(V747_D-1)->A:W-1(V748_D-1)) -removing edge Edge(717->747,w:4.0)(AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1)->C:W-1(V747_D-1)) -Found potential edge: Edge(717->748,w:4.0) between AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1) and A:W-1(V748_D-1) -removing vertex A:W-1(V748_D-1) was concatenated into AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1) -Want to move edge Edge(748->749,w:2.0)(A:W-1(V748_D-1)->C:W-1(V749_D-1)) to (AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1)->C:W-1(V749_D-1) - adding edge: AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1) to C:W-1(V749_D-1) -removing edge Edge(748->749,w:2.0)(A:W-1(V748_D-1)->C:W-1(V749_D-1)) -removing edge Edge(717->748,w:4.0)(AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1)->A:W-1(V748_D-1)) -Found potential edge: Edge(717->749,w:2.0) between AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1) and C:W-1(V749_D-1) -removing vertex C:W-1(V749_D-1) was concatenated into AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1) -Want to move edge Edge(749->750,w:2.0)(C:W-1(V749_D-1)->T:W-1(V750_D-1)) to (AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1)->T:W-1(V750_D-1) - adding edge: AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1) to T:W-1(V750_D-1) -removing edge Edge(749->750,w:2.0)(C:W-1(V749_D-1)->T:W-1(V750_D-1)) -removing edge Edge(717->749,w:2.0)(AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1)->C:W-1(V749_D-1)) -Found potential edge: Edge(717->750,w:2.0) between AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1) and T:W-1(V750_D-1) -removing vertex T:W-1(V750_D-1) was concatenated into AGCCACAGGT...CCGGCTCACT:W5(V717_D-1) -Want to move edge Edge(750->751,w:2.0)(T:W-1(V750_D-1)->T:W-1(V751_D-1)) to (AGCCACAGGT...CCGGCTCACT:W5(V717_D-1)->T:W-1(V751_D-1) - adding edge: AGCCACAGGT...CCGGCTCACT:W5(V717_D-1) to T:W-1(V751_D-1) -removing edge Edge(750->751,w:2.0)(T:W-1(V750_D-1)->T:W-1(V751_D-1)) -removing edge Edge(717->750,w:2.0)(AGCCACAGGT...CCGGCTCACT:W5(V717_D-1)->T:W-1(V750_D-1)) -Found potential edge: Edge(717->751,w:2.0) between AGCCACAGGT...CCGGCTCACT:W5(V717_D-1) and T:W-1(V751_D-1) -removing vertex T:W-1(V751_D-1) was concatenated into AGCCACAGGT...CGGCTCACTT:W5(V717_D-1) -Want to move edge Edge(751->752,w:2.0)(T:W-1(V751_D-1)->C:W-1(V752_D-1)) to (AGCCACAGGT...CGGCTCACTT:W5(V717_D-1)->C:W-1(V752_D-1) - adding edge: AGCCACAGGT...CGGCTCACTT:W5(V717_D-1) to C:W-1(V752_D-1) -removing edge Edge(751->752,w:2.0)(T:W-1(V751_D-1)->C:W-1(V752_D-1)) -removing edge Edge(717->751,w:2.0)(AGCCACAGGT...CGGCTCACTT:W5(V717_D-1)->T:W-1(V751_D-1)) -Found potential edge: Edge(717->752,w:2.0) between AGCCACAGGT...CGGCTCACTT:W5(V717_D-1) and C:W-1(V752_D-1) -removing vertex C:W-1(V752_D-1) was concatenated into AGCCACAGGT...GGCTCACTTC:W5(V717_D-1) -Want to move edge Edge(752->753,w:2.0)(C:W-1(V752_D-1)->C:W-1(V753_D-1)) to (AGCCACAGGT...GGCTCACTTC:W5(V717_D-1)->C:W-1(V753_D-1) - adding edge: AGCCACAGGT...GGCTCACTTC:W5(V717_D-1) to C:W-1(V753_D-1) -removing edge Edge(752->753,w:2.0)(C:W-1(V752_D-1)->C:W-1(V753_D-1)) -removing edge Edge(717->752,w:2.0)(AGCCACAGGT...GGCTCACTTC:W5(V717_D-1)->C:W-1(V752_D-1)) -Found potential edge: Edge(717->753,w:2.0) between AGCCACAGGT...GGCTCACTTC:W5(V717_D-1) and C:W-1(V753_D-1) -removing vertex C:W-1(V753_D-1) was concatenated into AGCCACAGGT...GCTCACTTCC:W5(V717_D-1) -Want to move edge Edge(753->754,w:2.0)(C:W-1(V753_D-1)->T:W-1(V754_D-1)) to (AGCCACAGGT...GCTCACTTCC:W5(V717_D-1)->T:W-1(V754_D-1) - adding edge: AGCCACAGGT...GCTCACTTCC:W5(V717_D-1) to T:W-1(V754_D-1) -removing edge Edge(753->754,w:2.0)(C:W-1(V753_D-1)->T:W-1(V754_D-1)) -removing edge Edge(717->753,w:2.0)(AGCCACAGGT...GCTCACTTCC:W5(V717_D-1)->C:W-1(V753_D-1)) -Found potential edge: Edge(717->754,w:2.0) between AGCCACAGGT...GCTCACTTCC:W5(V717_D-1) and T:W-1(V754_D-1) -removing vertex T:W-1(V754_D-1) was concatenated into AGCCACAGGT...CTCACTTCCT:W5(V717_D-1) -Want to move edge Edge(754->755,w:2.0)(T:W-1(V754_D-1)->G:W-1(V755_D-1)) to (AGCCACAGGT...CTCACTTCCT:W5(V717_D-1)->G:W-1(V755_D-1) - adding edge: AGCCACAGGT...CTCACTTCCT:W5(V717_D-1) to G:W-1(V755_D-1) -removing edge Edge(754->755,w:2.0)(T:W-1(V754_D-1)->G:W-1(V755_D-1)) -removing edge Edge(717->754,w:2.0)(AGCCACAGGT...CTCACTTCCT:W5(V717_D-1)->T:W-1(V754_D-1)) -Found potential edge: Edge(717->755,w:2.0) between AGCCACAGGT...CTCACTTCCT:W5(V717_D-1) and G:W-1(V755_D-1) -removing vertex G:W-1(V755_D-1) was concatenated into AGCCACAGGT...TCACTTCCTG:W5(V717_D-1) -Want to move edge Edge(755->756,w:2.0)(G:W-1(V755_D-1)->T:W-1(V756_D-1)) to (AGCCACAGGT...TCACTTCCTG:W5(V717_D-1)->T:W-1(V756_D-1) - adding edge: AGCCACAGGT...TCACTTCCTG:W5(V717_D-1) to T:W-1(V756_D-1) -removing edge Edge(755->756,w:2.0)(G:W-1(V755_D-1)->T:W-1(V756_D-1)) -removing edge Edge(717->755,w:2.0)(AGCCACAGGT...TCACTTCCTG:W5(V717_D-1)->G:W-1(V755_D-1)) -Found potential edge: Edge(717->756,w:2.0) between AGCCACAGGT...TCACTTCCTG:W5(V717_D-1) and T:W-1(V756_D-1) -removing vertex T:W-1(V756_D-1) was concatenated into AGCCACAGGT...CACTTCCTGT:W5(V717_D-1) -Want to move edge Edge(756->757,w:2.0)(T:W-1(V756_D-1)->G:W-1(V757_D-1)) to (AGCCACAGGT...CACTTCCTGT:W5(V717_D-1)->G:W-1(V757_D-1) - adding edge: AGCCACAGGT...CACTTCCTGT:W5(V717_D-1) to G:W-1(V757_D-1) -removing edge Edge(756->757,w:2.0)(T:W-1(V756_D-1)->G:W-1(V757_D-1)) -removing edge Edge(717->756,w:2.0)(AGCCACAGGT...CACTTCCTGT:W5(V717_D-1)->T:W-1(V756_D-1)) -Found potential edge: Edge(717->757,w:2.0) between AGCCACAGGT...CACTTCCTGT:W5(V717_D-1) and G:W-1(V757_D-1) -removing vertex G:W-1(V757_D-1) was concatenated into AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1) -Want to move edge Edge(757->758,w:2.0)(G:W-1(V757_D-1)->A:W-1(V758_D-1)) to (AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1)->A:W-1(V758_D-1) - adding edge: AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1) to A:W-1(V758_D-1) -removing edge Edge(757->758,w:2.0)(G:W-1(V757_D-1)->A:W-1(V758_D-1)) -removing edge Edge(717->757,w:2.0)(AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1)->G:W-1(V757_D-1)) -Found potential edge: Edge(717->758,w:2.0) between AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1) and A:W-1(V758_D-1) -removing vertex A:W-1(V758_D-1) was concatenated into AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) -removing edge Edge(717->758,w:2.0)(AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1)->A:W-1(V758_D-1)) -Found potential edge: Edge(786->787,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) and A:W-1(V787_D-1) -removing vertex A:W-1(V787_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1) -Want to move edge Edge(787->788,w:2.0)(A:W-1(V787_D-1)->A:W-1(V788_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1)->A:W-1(V788_D-1) - adding edge: GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1) to A:W-1(V788_D-1) -removing edge Edge(787->788,w:2.0)(A:W-1(V787_D-1)->A:W-1(V788_D-1)) -removing edge Edge(786->787,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1)->A:W-1(V787_D-1)) -Found potential edge: Edge(786->788,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1) and A:W-1(V788_D-1) -removing vertex A:W-1(V788_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1) -Want to move edge Edge(788->789,w:2.0)(A:W-1(V788_D-1)->C:W-1(V789_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1)->C:W-1(V789_D-1) - adding edge: GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1) to C:W-1(V789_D-1) -removing edge Edge(788->789,w:2.0)(A:W-1(V788_D-1)->C:W-1(V789_D-1)) -removing edge Edge(786->788,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1)->A:W-1(V788_D-1)) -Found potential edge: Edge(786->789,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1) and C:W-1(V789_D-1) -removing vertex C:W-1(V789_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1) -Want to move edge Edge(789->790,w:2.0)(C:W-1(V789_D-1)->C:W-1(V790_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1)->C:W-1(V790_D-1) - adding edge: GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1) to C:W-1(V790_D-1) -removing edge Edge(789->790,w:2.0)(C:W-1(V789_D-1)->C:W-1(V790_D-1)) -removing edge Edge(786->789,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1)->C:W-1(V789_D-1)) -Found potential edge: Edge(786->790,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1) and C:W-1(V790_D-1) -removing vertex C:W-1(V790_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1) -Want to move edge Edge(790->791,w:2.0)(C:W-1(V790_D-1)->C:W-1(V791_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1)->C:W-1(V791_D-1) - adding edge: GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1) to C:W-1(V791_D-1) -removing edge Edge(790->791,w:2.0)(C:W-1(V790_D-1)->C:W-1(V791_D-1)) -removing edge Edge(786->790,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1)->C:W-1(V790_D-1)) -Found potential edge: Edge(786->791,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1) and C:W-1(V791_D-1) -removing vertex C:W-1(V791_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1) -Want to move edge Edge(791->792,w:2.0)(C:W-1(V791_D-1)->A:W-1(V792_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1)->A:W-1(V792_D-1) - adding edge: GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1) to A:W-1(V792_D-1) -removing edge Edge(791->792,w:2.0)(C:W-1(V791_D-1)->A:W-1(V792_D-1)) -removing edge Edge(786->791,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1)->C:W-1(V791_D-1)) -Found potential edge: Edge(786->792,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1) and A:W-1(V792_D-1) -removing vertex A:W-1(V792_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1) -Want to move edge Edge(792->793,w:2.0)(A:W-1(V792_D-1)->G:W-1(V793_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1)->G:W-1(V793_D-1) - adding edge: GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1) to G:W-1(V793_D-1) -removing edge Edge(792->793,w:2.0)(A:W-1(V792_D-1)->G:W-1(V793_D-1)) -removing edge Edge(786->792,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1)->A:W-1(V792_D-1)) -Found potential edge: Edge(786->793,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1) and G:W-1(V793_D-1) -removing vertex G:W-1(V793_D-1) was concatenated into GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1) -Want to move edge Edge(793->794,w:2.0)(G:W-1(V793_D-1)->C:W-1(V794_D-1)) to (GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1)->C:W-1(V794_D-1) - adding edge: GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1) to C:W-1(V794_D-1) -removing edge Edge(793->794,w:2.0)(G:W-1(V793_D-1)->C:W-1(V794_D-1)) -removing edge Edge(786->793,w:2.0)(GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1)->G:W-1(V793_D-1)) -Found potential edge: Edge(786->794,w:2.0) between GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1) and C:W-1(V794_D-1) -removing vertex C:W-1(V794_D-1) was concatenated into GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1) -Want to move edge Edge(794->795,w:2.0)(C:W-1(V794_D-1)->C:W-1(V795_D-1)) to (GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1)->C:W-1(V795_D-1) - adding edge: GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1) to C:W-1(V795_D-1) -removing edge Edge(794->795,w:2.0)(C:W-1(V794_D-1)->C:W-1(V795_D-1)) -removing edge Edge(786->794,w:2.0)(GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1)->C:W-1(V794_D-1)) -Found potential edge: Edge(786->795,w:2.0) between GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1) and C:W-1(V795_D-1) -removing vertex C:W-1(V795_D-1) was concatenated into GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1) -Want to move edge Edge(795->796,w:2.0)(C:W-1(V795_D-1)->C:W-1(V796_D-1)) to (GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1)->C:W-1(V796_D-1) - adding edge: GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1) to C:W-1(V796_D-1) -removing edge Edge(795->796,w:2.0)(C:W-1(V795_D-1)->C:W-1(V796_D-1)) -removing edge Edge(786->795,w:2.0)(GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1)->C:W-1(V795_D-1)) -Found potential edge: Edge(786->796,w:2.0) between GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1) and C:W-1(V796_D-1) -removing vertex C:W-1(V796_D-1) was concatenated into GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1) -Want to move edge Edge(796->797,w:2.0)(C:W-1(V796_D-1)->C:W-1(V797_D-1)) to (GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1)->C:W-1(V797_D-1) - adding edge: GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1) to C:W-1(V797_D-1) -removing edge Edge(796->797,w:2.0)(C:W-1(V796_D-1)->C:W-1(V797_D-1)) -removing edge Edge(786->796,w:2.0)(GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1)->C:W-1(V796_D-1)) -Found potential edge: Edge(786->797,w:2.0) between GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1) and C:W-1(V797_D-1) -removing vertex C:W-1(V797_D-1) was concatenated into GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1) -Want to move edge Edge(797->798,w:2.0)(C:W-1(V797_D-1)->G:W-1(V798_D-1)) to (GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1)->G:W-1(V798_D-1) - adding edge: GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1) to G:W-1(V798_D-1) -removing edge Edge(797->798,w:2.0)(C:W-1(V797_D-1)->G:W-1(V798_D-1)) -removing edge Edge(786->797,w:2.0)(GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1)->C:W-1(V797_D-1)) -Found potential edge: Edge(786->798,w:2.0) between GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1) and G:W-1(V798_D-1) -removing vertex G:W-1(V798_D-1) was concatenated into GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1) -Want to move edge Edge(798->799,w:2.0)(G:W-1(V798_D-1)->T:W-1(V799_D-1)) to (GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1)->T:W-1(V799_D-1) - adding edge: GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1) to T:W-1(V799_D-1) -removing edge Edge(798->799,w:2.0)(G:W-1(V798_D-1)->T:W-1(V799_D-1)) -removing edge Edge(786->798,w:2.0)(GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1)->G:W-1(V798_D-1)) -Found potential edge: Edge(786->799,w:2.0) between GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1) and T:W-1(V799_D-1) -removing vertex T:W-1(V799_D-1) was concatenated into GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1) -Want to move edge Edge(799->800,w:2.0)(T:W-1(V799_D-1)->G:W-1(V800_D-1)) to (GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1)->G:W-1(V800_D-1) - adding edge: GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1) to G:W-1(V800_D-1) -removing edge Edge(799->800,w:2.0)(T:W-1(V799_D-1)->G:W-1(V800_D-1)) -removing edge Edge(786->799,w:2.0)(GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1)->T:W-1(V799_D-1)) -Found potential edge: Edge(786->800,w:2.0) between GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1) and G:W-1(V800_D-1) -removing vertex G:W-1(V800_D-1) was concatenated into GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1) -Want to move edge Edge(800->801,w:2.0)(G:W-1(V800_D-1)->G:W-1(V801_D-1)) to (GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1)->G:W-1(V801_D-1) - adding edge: GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1) to G:W-1(V801_D-1) -removing edge Edge(800->801,w:2.0)(G:W-1(V800_D-1)->G:W-1(V801_D-1)) -removing edge Edge(786->800,w:2.0)(GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1)->G:W-1(V800_D-1)) -Found potential edge: Edge(786->801,w:2.0) between GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1) and G:W-1(V801_D-1) -removing vertex G:W-1(V801_D-1) was concatenated into GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1) -Want to move edge Edge(801->802,w:2.0)(G:W-1(V801_D-1)->A:W-1(V802_D-1)) to (GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1)->A:W-1(V802_D-1) - adding edge: GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1) to A:W-1(V802_D-1) -removing edge Edge(801->802,w:2.0)(G:W-1(V801_D-1)->A:W-1(V802_D-1)) -removing edge Edge(786->801,w:2.0)(GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1)->G:W-1(V801_D-1)) -Found potential edge: Edge(786->802,w:2.0) between GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1) and A:W-1(V802_D-1) -removing vertex A:W-1(V802_D-1) was concatenated into GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1) -Want to move edge Edge(802->803,w:2.0)(A:W-1(V802_D-1)->G:W-1(V803_D-1)) to (GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1)->G:W-1(V803_D-1) - adding edge: GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1) to G:W-1(V803_D-1) -removing edge Edge(802->803,w:2.0)(A:W-1(V802_D-1)->G:W-1(V803_D-1)) -removing edge Edge(786->802,w:2.0)(GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1)->A:W-1(V802_D-1)) -Found potential edge: Edge(786->803,w:2.0) between GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1) and G:W-1(V803_D-1) -removing vertex G:W-1(V803_D-1) was concatenated into GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1) -Want to move edge Edge(803->804,w:2.0)(G:W-1(V803_D-1)->G:W-1(V804_D-1)) to (GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1)->G:W-1(V804_D-1) - adding edge: GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1) to G:W-1(V804_D-1) -removing edge Edge(803->804,w:2.0)(G:W-1(V803_D-1)->G:W-1(V804_D-1)) -removing edge Edge(786->803,w:2.0)(GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1)->G:W-1(V803_D-1)) -Found potential edge: Edge(786->804,w:2.0) between GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1) and G:W-1(V804_D-1) -removing vertex G:W-1(V804_D-1) was concatenated into GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1) -Want to move edge Edge(804->805,w:2.0)(G:W-1(V804_D-1)->G:W-1(V805_D-1)) to (GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1)->G:W-1(V805_D-1) - adding edge: GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1) to G:W-1(V805_D-1) -removing edge Edge(804->805,w:2.0)(G:W-1(V804_D-1)->G:W-1(V805_D-1)) -removing edge Edge(786->804,w:2.0)(GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1)->G:W-1(V804_D-1)) -Found potential edge: Edge(786->805,w:2.0) between GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1) and G:W-1(V805_D-1) -removing vertex G:W-1(V805_D-1) was concatenated into GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1) -Want to move edge Edge(805->806,w:2.0)(G:W-1(V805_D-1)->A:W-1(V806_D-1)) to (GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1)->A:W-1(V806_D-1) - adding edge: GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1) to A:W-1(V806_D-1) -removing edge Edge(805->806,w:2.0)(G:W-1(V805_D-1)->A:W-1(V806_D-1)) -removing edge Edge(786->805,w:2.0)(GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1)->G:W-1(V805_D-1)) -Found potential edge: Edge(786->806,w:2.0) between GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1) and A:W-1(V806_D-1) -removing vertex A:W-1(V806_D-1) was concatenated into GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1) -Want to move edge Edge(806->807,w:2.0)(A:W-1(V806_D-1)->G:W-1(V807_D-1)) to (GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1)->G:W-1(V807_D-1) - adding edge: GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1) to G:W-1(V807_D-1) -removing edge Edge(806->807,w:2.0)(A:W-1(V806_D-1)->G:W-1(V807_D-1)) -removing edge Edge(786->806,w:2.0)(GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1)->A:W-1(V806_D-1)) -Found potential edge: Edge(786->807,w:2.0) between GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1) and G:W-1(V807_D-1) -removing vertex G:W-1(V807_D-1) was concatenated into GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1) -Want to move edge Edge(807->808,w:2.0)(G:W-1(V807_D-1)->C:W-1(V808_D-1)) to (GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1)->C:W-1(V808_D-1) - adding edge: GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1) to C:W-1(V808_D-1) -removing edge Edge(807->808,w:2.0)(G:W-1(V807_D-1)->C:W-1(V808_D-1)) -removing edge Edge(786->807,w:2.0)(GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1)->G:W-1(V807_D-1)) -Found potential edge: Edge(786->808,w:2.0) between GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1) and C:W-1(V808_D-1) -removing vertex C:W-1(V808_D-1) was concatenated into GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1) -Want to move edge Edge(808->809,w:2.0)(C:W-1(V808_D-1)->C:W-1(V809_D-1)) to (GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1)->C:W-1(V809_D-1) - adding edge: GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1) to C:W-1(V809_D-1) -removing edge Edge(808->809,w:2.0)(C:W-1(V808_D-1)->C:W-1(V809_D-1)) -removing edge Edge(786->808,w:2.0)(GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1)->C:W-1(V808_D-1)) -Found potential edge: Edge(786->809,w:2.0) between GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1) and C:W-1(V809_D-1) -removing vertex C:W-1(V809_D-1) was concatenated into GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1) -Want to move edge Edge(809->810,w:2.0)(C:W-1(V809_D-1)->A:W-1(V810_D-1)) to (GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1)->A:W-1(V810_D-1) - adding edge: GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1) to A:W-1(V810_D-1) -removing edge Edge(809->810,w:2.0)(C:W-1(V809_D-1)->A:W-1(V810_D-1)) -removing edge Edge(786->809,w:2.0)(GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1)->C:W-1(V809_D-1)) -Found potential edge: Edge(786->810,w:2.0) between GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1) and A:W-1(V810_D-1) -removing vertex A:W-1(V810_D-1) was concatenated into GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1) -Want to move edge Edge(810->811,w:2.0)(A:W-1(V810_D-1)->C:W-1(V811_D-1)) to (GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1)->C:W-1(V811_D-1) - adding edge: GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1) to C:W-1(V811_D-1) -removing edge Edge(810->811,w:2.0)(A:W-1(V810_D-1)->C:W-1(V811_D-1)) -removing edge Edge(786->810,w:2.0)(GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1)->A:W-1(V810_D-1)) -Found potential edge: Edge(786->811,w:2.0) between GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1) and C:W-1(V811_D-1) -removing vertex C:W-1(V811_D-1) was concatenated into GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1) -Want to move edge Edge(811->812,w:2.0)(C:W-1(V811_D-1)->C:W-1(V812_D-1)) to (GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1)->C:W-1(V812_D-1) - adding edge: GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1) to C:W-1(V812_D-1) -removing edge Edge(811->812,w:2.0)(C:W-1(V811_D-1)->C:W-1(V812_D-1)) -removing edge Edge(786->811,w:2.0)(GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1)->C:W-1(V811_D-1)) -Found potential edge: Edge(786->812,w:2.0) between GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1) and C:W-1(V812_D-1) -removing vertex C:W-1(V812_D-1) was concatenated into GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) -Want to move edge Edge(812->717,w:2.0)(C:W-1(V812_D-1)->AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1)) to (GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1)->AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) - adding edge: GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) to AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) -removing edge Edge(812->717,w:2.0)(C:W-1(V812_D-1)->AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1)) -removing edge Edge(786->812,w:2.0)(GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1)->C:W-1(V812_D-1)) -Found potential edge: Edge(813->814,w:2.0) between C:W-1(V813_D-1) and A:W-1(V814_D-1) -removing vertex A:W-1(V814_D-1) was concatenated into CA:W2(V813_D-1) -Want to move edge Edge(814->815,w:2.0)(A:W-1(V814_D-1)->G:W-1(V815_D-1)) to (CA:W2(V813_D-1)->G:W-1(V815_D-1) - adding edge: CA:W2(V813_D-1) to G:W-1(V815_D-1) -removing edge Edge(814->815,w:2.0)(A:W-1(V814_D-1)->G:W-1(V815_D-1)) -removing edge Edge(813->814,w:2.0)(CA:W2(V813_D-1)->A:W-1(V814_D-1)) -Found potential edge: Edge(813->815,w:2.0) between CA:W2(V813_D-1) and G:W-1(V815_D-1) -removing vertex G:W-1(V815_D-1) was concatenated into CAG:W2(V813_D-1) -Want to move edge Edge(815->816,w:2.0)(G:W-1(V815_D-1)->C:W-1(V816_D-1)) to (CAG:W2(V813_D-1)->C:W-1(V816_D-1) - adding edge: CAG:W2(V813_D-1) to C:W-1(V816_D-1) -removing edge Edge(815->816,w:2.0)(G:W-1(V815_D-1)->C:W-1(V816_D-1)) -removing edge Edge(813->815,w:2.0)(CAG:W2(V813_D-1)->G:W-1(V815_D-1)) -Found potential edge: Edge(813->816,w:2.0) between CAG:W2(V813_D-1) and C:W-1(V816_D-1) -removing vertex C:W-1(V816_D-1) was concatenated into CAGC:W2(V813_D-1) -Want to move edge Edge(816->817,w:2.0)(C:W-1(V816_D-1)->A:W-1(V817_D-1)) to (CAGC:W2(V813_D-1)->A:W-1(V817_D-1) - adding edge: CAGC:W2(V813_D-1) to A:W-1(V817_D-1) -removing edge Edge(816->817,w:2.0)(C:W-1(V816_D-1)->A:W-1(V817_D-1)) -removing edge Edge(813->816,w:2.0)(CAGC:W2(V813_D-1)->C:W-1(V816_D-1)) -Found potential edge: Edge(813->817,w:2.0) between CAGC:W2(V813_D-1) and A:W-1(V817_D-1) -removing vertex A:W-1(V817_D-1) was concatenated into CAGCA:W2(V813_D-1) -Want to move edge Edge(817->818,w:2.0)(A:W-1(V817_D-1)->C:W-1(V818_D-1)) to (CAGCA:W2(V813_D-1)->C:W-1(V818_D-1) - adding edge: CAGCA:W2(V813_D-1) to C:W-1(V818_D-1) -removing edge Edge(817->818,w:2.0)(A:W-1(V817_D-1)->C:W-1(V818_D-1)) -removing edge Edge(813->817,w:2.0)(CAGCA:W2(V813_D-1)->A:W-1(V817_D-1)) -Found potential edge: Edge(813->818,w:2.0) between CAGCA:W2(V813_D-1) and C:W-1(V818_D-1) -removing vertex C:W-1(V818_D-1) was concatenated into CAGCAC:W2(V813_D-1) -Want to move edge Edge(818->819,w:2.0)(C:W-1(V818_D-1)->T:W-1(V819_D-1)) to (CAGCAC:W2(V813_D-1)->T:W-1(V819_D-1) - adding edge: CAGCAC:W2(V813_D-1) to T:W-1(V819_D-1) -removing edge Edge(818->819,w:2.0)(C:W-1(V818_D-1)->T:W-1(V819_D-1)) -removing edge Edge(813->818,w:2.0)(CAGCAC:W2(V813_D-1)->C:W-1(V818_D-1)) -Found potential edge: Edge(813->819,w:2.0) between CAGCAC:W2(V813_D-1) and T:W-1(V819_D-1) -removing vertex T:W-1(V819_D-1) was concatenated into CAGCACT:W2(V813_D-1) -Want to move edge Edge(819->820,w:2.0)(T:W-1(V819_D-1)->C:W-1(V820_D-1)) to (CAGCACT:W2(V813_D-1)->C:W-1(V820_D-1) - adding edge: CAGCACT:W2(V813_D-1) to C:W-1(V820_D-1) -removing edge Edge(819->820,w:2.0)(T:W-1(V819_D-1)->C:W-1(V820_D-1)) -removing edge Edge(813->819,w:2.0)(CAGCACT:W2(V813_D-1)->T:W-1(V819_D-1)) -Found potential edge: Edge(813->820,w:2.0) between CAGCACT:W2(V813_D-1) and C:W-1(V820_D-1) -removing vertex C:W-1(V820_D-1) was concatenated into CAGCACTC:W2(V813_D-1) -Want to move edge Edge(820->821,w:2.0)(C:W-1(V820_D-1)->T:W-1(V821_D-1)) to (CAGCACTC:W2(V813_D-1)->T:W-1(V821_D-1) - adding edge: CAGCACTC:W2(V813_D-1) to T:W-1(V821_D-1) -removing edge Edge(820->821,w:2.0)(C:W-1(V820_D-1)->T:W-1(V821_D-1)) -removing edge Edge(813->820,w:2.0)(CAGCACTC:W2(V813_D-1)->C:W-1(V820_D-1)) -Found potential edge: Edge(813->821,w:2.0) between CAGCACTC:W2(V813_D-1) and T:W-1(V821_D-1) -removing vertex T:W-1(V821_D-1) was concatenated into CAGCACTCT:W2(V813_D-1) -Want to move edge Edge(821->822,w:2.0)(T:W-1(V821_D-1)->G:W-1(V822_D-1)) to (CAGCACTCT:W2(V813_D-1)->G:W-1(V822_D-1) - adding edge: CAGCACTCT:W2(V813_D-1) to G:W-1(V822_D-1) -removing edge Edge(821->822,w:2.0)(T:W-1(V821_D-1)->G:W-1(V822_D-1)) -removing edge Edge(813->821,w:2.0)(CAGCACTCT:W2(V813_D-1)->T:W-1(V821_D-1)) -Found potential edge: Edge(813->822,w:2.0) between CAGCACTCT:W2(V813_D-1) and G:W-1(V822_D-1) -removing vertex G:W-1(V822_D-1) was concatenated into CAGCACTCTG:W2(V813_D-1) -Want to move edge Edge(822->823,w:2.0)(G:W-1(V822_D-1)->A:W-1(V823_D-1)) to (CAGCACTCTG:W2(V813_D-1)->A:W-1(V823_D-1) - adding edge: CAGCACTCTG:W2(V813_D-1) to A:W-1(V823_D-1) -removing edge Edge(822->823,w:2.0)(G:W-1(V822_D-1)->A:W-1(V823_D-1)) -removing edge Edge(813->822,w:2.0)(CAGCACTCTG:W2(V813_D-1)->G:W-1(V822_D-1)) -Found potential edge: Edge(813->823,w:2.0) between CAGCACTCTG:W2(V813_D-1) and A:W-1(V823_D-1) -removing vertex A:W-1(V823_D-1) was concatenated into CAGCACTCTGA:W2(V813_D-1) -Want to move edge Edge(823->824,w:2.0)(A:W-1(V823_D-1)->A:W-1(V824_D-1)) to (CAGCACTCTGA:W2(V813_D-1)->A:W-1(V824_D-1) - adding edge: CAGCACTCTGA:W2(V813_D-1) to A:W-1(V824_D-1) -removing edge Edge(823->824,w:2.0)(A:W-1(V823_D-1)->A:W-1(V824_D-1)) -removing edge Edge(813->823,w:2.0)(CAGCACTCTGA:W2(V813_D-1)->A:W-1(V823_D-1)) -Found potential edge: Edge(813->824,w:2.0) between CAGCACTCTGA:W2(V813_D-1) and A:W-1(V824_D-1) -removing vertex A:W-1(V824_D-1) was concatenated into CAGCACTCTGAA:W2(V813_D-1) -Want to move edge Edge(824->825,w:2.0)(A:W-1(V824_D-1)->C:W-1(V825_D-1)) to (CAGCACTCTGAA:W2(V813_D-1)->C:W-1(V825_D-1) - adding edge: CAGCACTCTGAA:W2(V813_D-1) to C:W-1(V825_D-1) -removing edge Edge(824->825,w:2.0)(A:W-1(V824_D-1)->C:W-1(V825_D-1)) -removing edge Edge(813->824,w:2.0)(CAGCACTCTGAA:W2(V813_D-1)->A:W-1(V824_D-1)) -Found potential edge: Edge(813->825,w:2.0) between CAGCACTCTGAA:W2(V813_D-1) and C:W-1(V825_D-1) -removing vertex C:W-1(V825_D-1) was concatenated into CAGCACTCTGAAC:W2(V813_D-1) -Want to move edge Edge(825->826,w:2.0)(C:W-1(V825_D-1)->C:W-1(V826_D-1)) to (CAGCACTCTGAAC:W2(V813_D-1)->C:W-1(V826_D-1) - adding edge: CAGCACTCTGAAC:W2(V813_D-1) to C:W-1(V826_D-1) -removing edge Edge(825->826,w:2.0)(C:W-1(V825_D-1)->C:W-1(V826_D-1)) -removing edge Edge(813->825,w:2.0)(CAGCACTCTGAAC:W2(V813_D-1)->C:W-1(V825_D-1)) -Found potential edge: Edge(813->826,w:2.0) between CAGCACTCTGAAC:W2(V813_D-1) and C:W-1(V826_D-1) -removing vertex C:W-1(V826_D-1) was concatenated into CAGCACTCTGAACC:W2(V813_D-1) -Want to move edge Edge(826->827,w:2.0)(C:W-1(V826_D-1)->C:W-1(V827_D-1)) to (CAGCACTCTGAACC:W2(V813_D-1)->C:W-1(V827_D-1) - adding edge: CAGCACTCTGAACC:W2(V813_D-1) to C:W-1(V827_D-1) -removing edge Edge(826->827,w:2.0)(C:W-1(V826_D-1)->C:W-1(V827_D-1)) -removing edge Edge(813->826,w:2.0)(CAGCACTCTGAACC:W2(V813_D-1)->C:W-1(V826_D-1)) -Found potential edge: Edge(813->827,w:2.0) between CAGCACTCTGAACC:W2(V813_D-1) and C:W-1(V827_D-1) -removing vertex C:W-1(V827_D-1) was concatenated into CAGCACTCTGAACCC:W2(V813_D-1) -Want to move edge Edge(827->828,w:2.0)(C:W-1(V827_D-1)->T:W-1(V828_D-1)) to (CAGCACTCTGAACCC:W2(V813_D-1)->T:W-1(V828_D-1) - adding edge: CAGCACTCTGAACCC:W2(V813_D-1) to T:W-1(V828_D-1) -removing edge Edge(827->828,w:2.0)(C:W-1(V827_D-1)->T:W-1(V828_D-1)) -removing edge Edge(813->827,w:2.0)(CAGCACTCTGAACCC:W2(V813_D-1)->C:W-1(V827_D-1)) -Found potential edge: Edge(813->828,w:2.0) between CAGCACTCTGAACCC:W2(V813_D-1) and T:W-1(V828_D-1) -removing vertex T:W-1(V828_D-1) was concatenated into CAGCACTCTGAACCCT:W2(V813_D-1) -Want to move edge Edge(828->829,w:2.0)(T:W-1(V828_D-1)->G:W-1(V829_D-1)) to (CAGCACTCTGAACCCT:W2(V813_D-1)->G:W-1(V829_D-1) - adding edge: CAGCACTCTGAACCCT:W2(V813_D-1) to G:W-1(V829_D-1) -removing edge Edge(828->829,w:2.0)(T:W-1(V828_D-1)->G:W-1(V829_D-1)) -removing edge Edge(813->828,w:2.0)(CAGCACTCTGAACCCT:W2(V813_D-1)->T:W-1(V828_D-1)) -Found potential edge: Edge(813->829,w:2.0) between CAGCACTCTGAACCCT:W2(V813_D-1) and G:W-1(V829_D-1) -removing vertex G:W-1(V829_D-1) was concatenated into CAGCACTCTGAACCCTG:W2(V813_D-1) -Want to move edge Edge(829->830,w:2.0)(G:W-1(V829_D-1)->T:W-1(V830_D-1)) to (CAGCACTCTGAACCCTG:W2(V813_D-1)->T:W-1(V830_D-1) - adding edge: CAGCACTCTGAACCCTG:W2(V813_D-1) to T:W-1(V830_D-1) -removing edge Edge(829->830,w:2.0)(G:W-1(V829_D-1)->T:W-1(V830_D-1)) -removing edge Edge(813->829,w:2.0)(CAGCACTCTGAACCCTG:W2(V813_D-1)->G:W-1(V829_D-1)) -Found potential edge: Edge(813->830,w:2.0) between CAGCACTCTGAACCCTG:W2(V813_D-1) and T:W-1(V830_D-1) -removing vertex T:W-1(V830_D-1) was concatenated into CAGCACTCTGAACCCTGT:W2(V813_D-1) -Want to move edge Edge(830->831,w:2.0)(T:W-1(V830_D-1)->G:W-1(V831_D-1)) to (CAGCACTCTGAACCCTGT:W2(V813_D-1)->G:W-1(V831_D-1) - adding edge: CAGCACTCTGAACCCTGT:W2(V813_D-1) to G:W-1(V831_D-1) -removing edge Edge(830->831,w:2.0)(T:W-1(V830_D-1)->G:W-1(V831_D-1)) -removing edge Edge(813->830,w:2.0)(CAGCACTCTGAACCCTGT:W2(V813_D-1)->T:W-1(V830_D-1)) -Found potential edge: Edge(813->831,w:2.0) between CAGCACTCTGAACCCTGT:W2(V813_D-1) and G:W-1(V831_D-1) -removing vertex G:W-1(V831_D-1) was concatenated into CAGCACTCTGAACCCTGTG:W2(V813_D-1) -Want to move edge Edge(831->832,w:2.0)(G:W-1(V831_D-1)->A:W-1(V832_D-1)) to (CAGCACTCTGAACCCTGTG:W2(V813_D-1)->A:W-1(V832_D-1) - adding edge: CAGCACTCTGAACCCTGTG:W2(V813_D-1) to A:W-1(V832_D-1) -removing edge Edge(831->832,w:2.0)(G:W-1(V831_D-1)->A:W-1(V832_D-1)) -removing edge Edge(813->831,w:2.0)(CAGCACTCTGAACCCTGTG:W2(V813_D-1)->G:W-1(V831_D-1)) -Found potential edge: Edge(813->832,w:2.0) between CAGCACTCTGAACCCTGTG:W2(V813_D-1) and A:W-1(V832_D-1) -removing vertex A:W-1(V832_D-1) was concatenated into CAGCACTCTGAACCCTGTGA:W2(V813_D-1) -Want to move edge Edge(832->833,w:2.0)(A:W-1(V832_D-1)->G:W-1(V833_D-1)) to (CAGCACTCTGAACCCTGTGA:W2(V813_D-1)->G:W-1(V833_D-1) - adding edge: CAGCACTCTGAACCCTGTGA:W2(V813_D-1) to G:W-1(V833_D-1) -removing edge Edge(832->833,w:2.0)(A:W-1(V832_D-1)->G:W-1(V833_D-1)) -removing edge Edge(813->832,w:2.0)(CAGCACTCTGAACCCTGTGA:W2(V813_D-1)->A:W-1(V832_D-1)) -Found potential edge: Edge(813->833,w:2.0) between CAGCACTCTGAACCCTGTGA:W2(V813_D-1) and G:W-1(V833_D-1) -removing vertex G:W-1(V833_D-1) was concatenated into CAGCACTCTGAACCCTGTGAG:W2(V813_D-1) -Want to move edge Edge(833->834,w:2.0)(G:W-1(V833_D-1)->G:W-1(V834_D-1)) to (CAGCACTCTGAACCCTGTGAG:W2(V813_D-1)->G:W-1(V834_D-1) - adding edge: CAGCACTCTGAACCCTGTGAG:W2(V813_D-1) to G:W-1(V834_D-1) -removing edge Edge(833->834,w:2.0)(G:W-1(V833_D-1)->G:W-1(V834_D-1)) -removing edge Edge(813->833,w:2.0)(CAGCACTCTGAACCCTGTGAG:W2(V813_D-1)->G:W-1(V833_D-1)) -Found potential edge: Edge(813->834,w:2.0) between CAGCACTCTGAACCCTGTGAG:W2(V813_D-1) and G:W-1(V834_D-1) -removing vertex G:W-1(V834_D-1) was concatenated into CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1) -Want to move edge Edge(834->835,w:2.0)(G:W-1(V834_D-1)->C:W-1(V835_D-1)) to (CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1)->C:W-1(V835_D-1) - adding edge: CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1) to C:W-1(V835_D-1) -removing edge Edge(834->835,w:2.0)(G:W-1(V834_D-1)->C:W-1(V835_D-1)) -removing edge Edge(813->834,w:2.0)(CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1)->G:W-1(V834_D-1)) -Found potential edge: Edge(813->835,w:2.0) between CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1) and C:W-1(V835_D-1) -removing vertex C:W-1(V835_D-1) was concatenated into CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1) -Want to move edge Edge(835->836,w:2.0)(C:W-1(V835_D-1)->A:W-1(V836_D-1)) to (CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1)->A:W-1(V836_D-1) - adding edge: CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1) to A:W-1(V836_D-1) -removing edge Edge(835->836,w:2.0)(C:W-1(V835_D-1)->A:W-1(V836_D-1)) -removing edge Edge(813->835,w:2.0)(CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1)->C:W-1(V835_D-1)) -Found potential edge: Edge(813->836,w:2.0) between CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1) and A:W-1(V836_D-1) -removing vertex A:W-1(V836_D-1) was concatenated into CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) -Want to move edge Edge(836->549,w:2.0)(A:W-1(V836_D-1)->AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)) to (CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1)->AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) - adding edge: CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) to AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) -removing edge Edge(836->549,w:2.0)(A:W-1(V836_D-1)->AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)) -removing edge Edge(813->836,w:2.0)(CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1)->A:W-1(V836_D-1)) -Found potential edge: Edge(885->886,w:2.0) between G:W-1(V885_D-1) and C:W-1(V886_D-1) -removing vertex C:W-1(V886_D-1) was concatenated into GC:W2(V885_D-1) -Want to move edge Edge(886->887,w:2.0)(C:W-1(V886_D-1)->T:W-1(V887_D-1)) to (GC:W2(V885_D-1)->T:W-1(V887_D-1) - adding edge: GC:W2(V885_D-1) to T:W-1(V887_D-1) -removing edge Edge(886->887,w:2.0)(C:W-1(V886_D-1)->T:W-1(V887_D-1)) -removing edge Edge(885->886,w:2.0)(GC:W2(V885_D-1)->C:W-1(V886_D-1)) -Found potential edge: Edge(885->887,w:2.0) between GC:W2(V885_D-1) and T:W-1(V887_D-1) -removing vertex T:W-1(V887_D-1) was concatenated into GCT:W2(V885_D-1) -Want to move edge Edge(887->888,w:2.0)(T:W-1(V887_D-1)->C:W-1(V888_D-1)) to (GCT:W2(V885_D-1)->C:W-1(V888_D-1) - adding edge: GCT:W2(V885_D-1) to C:W-1(V888_D-1) -removing edge Edge(887->888,w:2.0)(T:W-1(V887_D-1)->C:W-1(V888_D-1)) -removing edge Edge(885->887,w:2.0)(GCT:W2(V885_D-1)->T:W-1(V887_D-1)) -Found potential edge: Edge(885->888,w:2.0) between GCT:W2(V885_D-1) and C:W-1(V888_D-1) -removing vertex C:W-1(V888_D-1) was concatenated into GCTC:W2(V885_D-1) -Want to move edge Edge(888->889,w:2.0)(C:W-1(V888_D-1)->A:W-1(V889_D-1)) to (GCTC:W2(V885_D-1)->A:W-1(V889_D-1) - adding edge: GCTC:W2(V885_D-1) to A:W-1(V889_D-1) -removing edge Edge(888->889,w:2.0)(C:W-1(V888_D-1)->A:W-1(V889_D-1)) -removing edge Edge(885->888,w:2.0)(GCTC:W2(V885_D-1)->C:W-1(V888_D-1)) -Found potential edge: Edge(885->889,w:2.0) between GCTC:W2(V885_D-1) and A:W-1(V889_D-1) -removing vertex A:W-1(V889_D-1) was concatenated into GCTCA:W2(V885_D-1) -Want to move edge Edge(889->890,w:2.0)(A:W-1(V889_D-1)->T:W-1(V890_D-1)) to (GCTCA:W2(V885_D-1)->T:W-1(V890_D-1) - adding edge: GCTCA:W2(V885_D-1) to T:W-1(V890_D-1) -removing edge Edge(889->890,w:2.0)(A:W-1(V889_D-1)->T:W-1(V890_D-1)) -removing edge Edge(885->889,w:2.0)(GCTCA:W2(V885_D-1)->A:W-1(V889_D-1)) -Found potential edge: Edge(885->890,w:2.0) between GCTCA:W2(V885_D-1) and T:W-1(V890_D-1) -removing vertex T:W-1(V890_D-1) was concatenated into GCTCAT:W2(V885_D-1) -Want to move edge Edge(890->891,w:2.0)(T:W-1(V890_D-1)->C:W-1(V891_D-1)) to (GCTCAT:W2(V885_D-1)->C:W-1(V891_D-1) - adding edge: GCTCAT:W2(V885_D-1) to C:W-1(V891_D-1) -removing edge Edge(890->891,w:2.0)(T:W-1(V890_D-1)->C:W-1(V891_D-1)) -removing edge Edge(885->890,w:2.0)(GCTCAT:W2(V885_D-1)->T:W-1(V890_D-1)) -Found potential edge: Edge(885->891,w:2.0) between GCTCAT:W2(V885_D-1) and C:W-1(V891_D-1) -removing vertex C:W-1(V891_D-1) was concatenated into GCTCATC:W2(V885_D-1) -Want to move edge Edge(891->892,w:2.0)(C:W-1(V891_D-1)->A:W-1(V892_D-1)) to (GCTCATC:W2(V885_D-1)->A:W-1(V892_D-1) - adding edge: GCTCATC:W2(V885_D-1) to A:W-1(V892_D-1) -removing edge Edge(891->892,w:2.0)(C:W-1(V891_D-1)->A:W-1(V892_D-1)) -removing edge Edge(885->891,w:2.0)(GCTCATC:W2(V885_D-1)->C:W-1(V891_D-1)) -Found potential edge: Edge(885->892,w:2.0) between GCTCATC:W2(V885_D-1) and A:W-1(V892_D-1) -removing vertex A:W-1(V892_D-1) was concatenated into GCTCATCA:W2(V885_D-1) -Want to move edge Edge(892->893,w:2.0)(A:W-1(V892_D-1)->G:W-1(V893_D-1)) to (GCTCATCA:W2(V885_D-1)->G:W-1(V893_D-1) - adding edge: GCTCATCA:W2(V885_D-1) to G:W-1(V893_D-1) -removing edge Edge(892->893,w:2.0)(A:W-1(V892_D-1)->G:W-1(V893_D-1)) -removing edge Edge(885->892,w:2.0)(GCTCATCA:W2(V885_D-1)->A:W-1(V892_D-1)) -Found potential edge: Edge(885->893,w:2.0) between GCTCATCA:W2(V885_D-1) and G:W-1(V893_D-1) -removing vertex G:W-1(V893_D-1) was concatenated into GCTCATCAG:W2(V885_D-1) -Want to move edge Edge(893->894,w:2.0)(G:W-1(V893_D-1)->C:W-1(V894_D-1)) to (GCTCATCAG:W2(V885_D-1)->C:W-1(V894_D-1) - adding edge: GCTCATCAG:W2(V885_D-1) to C:W-1(V894_D-1) -removing edge Edge(893->894,w:2.0)(G:W-1(V893_D-1)->C:W-1(V894_D-1)) -removing edge Edge(885->893,w:2.0)(GCTCATCAG:W2(V885_D-1)->G:W-1(V893_D-1)) -Found potential edge: Edge(885->894,w:2.0) between GCTCATCAG:W2(V885_D-1) and C:W-1(V894_D-1) -removing vertex C:W-1(V894_D-1) was concatenated into GCTCATCAGC:W2(V885_D-1) -Want to move edge Edge(894->895,w:2.0)(C:W-1(V894_D-1)->A:W-1(V895_D-1)) to (GCTCATCAGC:W2(V885_D-1)->A:W-1(V895_D-1) - adding edge: GCTCATCAGC:W2(V885_D-1) to A:W-1(V895_D-1) -removing edge Edge(894->895,w:2.0)(C:W-1(V894_D-1)->A:W-1(V895_D-1)) -removing edge Edge(885->894,w:2.0)(GCTCATCAGC:W2(V885_D-1)->C:W-1(V894_D-1)) -Found potential edge: Edge(885->895,w:2.0) between GCTCATCAGC:W2(V885_D-1) and A:W-1(V895_D-1) -removing vertex A:W-1(V895_D-1) was concatenated into GCTCATCAGCA:W2(V885_D-1) -Want to move edge Edge(895->896,w:2.0)(A:W-1(V895_D-1)->A:W-1(V896_D-1)) to (GCTCATCAGCA:W2(V885_D-1)->A:W-1(V896_D-1) - adding edge: GCTCATCAGCA:W2(V885_D-1) to A:W-1(V896_D-1) -removing edge Edge(895->896,w:2.0)(A:W-1(V895_D-1)->A:W-1(V896_D-1)) -removing edge Edge(885->895,w:2.0)(GCTCATCAGCA:W2(V885_D-1)->A:W-1(V895_D-1)) -Found potential edge: Edge(885->896,w:2.0) between GCTCATCAGCA:W2(V885_D-1) and A:W-1(V896_D-1) -removing vertex A:W-1(V896_D-1) was concatenated into GCTCATCAGCAA:W2(V885_D-1) -Want to move edge Edge(896->897,w:2.0)(A:W-1(V896_D-1)->G:W-1(V897_D-1)) to (GCTCATCAGCAA:W2(V885_D-1)->G:W-1(V897_D-1) - adding edge: GCTCATCAGCAA:W2(V885_D-1) to G:W-1(V897_D-1) -removing edge Edge(896->897,w:2.0)(A:W-1(V896_D-1)->G:W-1(V897_D-1)) -removing edge Edge(885->896,w:2.0)(GCTCATCAGCAA:W2(V885_D-1)->A:W-1(V896_D-1)) -Found potential edge: Edge(885->897,w:2.0) between GCTCATCAGCAA:W2(V885_D-1) and G:W-1(V897_D-1) -removing vertex G:W-1(V897_D-1) was concatenated into GCTCATCAGCAAG:W2(V885_D-1) -Want to move edge Edge(897->898,w:2.0)(G:W-1(V897_D-1)->A:W-1(V898_D-1)) to (GCTCATCAGCAAG:W2(V885_D-1)->A:W-1(V898_D-1) - adding edge: GCTCATCAGCAAG:W2(V885_D-1) to A:W-1(V898_D-1) -removing edge Edge(897->898,w:2.0)(G:W-1(V897_D-1)->A:W-1(V898_D-1)) -removing edge Edge(885->897,w:2.0)(GCTCATCAGCAAG:W2(V885_D-1)->G:W-1(V897_D-1)) -Found potential edge: Edge(885->898,w:2.0) between GCTCATCAGCAAG:W2(V885_D-1) and A:W-1(V898_D-1) -removing vertex A:W-1(V898_D-1) was concatenated into GCTCATCAGCAAGA:W2(V885_D-1) -Want to move edge Edge(898->899,w:2.0)(A:W-1(V898_D-1)->A:W-1(V899_D-1)) to (GCTCATCAGCAAGA:W2(V885_D-1)->A:W-1(V899_D-1) - adding edge: GCTCATCAGCAAGA:W2(V885_D-1) to A:W-1(V899_D-1) -removing edge Edge(898->899,w:2.0)(A:W-1(V898_D-1)->A:W-1(V899_D-1)) -removing edge Edge(885->898,w:2.0)(GCTCATCAGCAAGA:W2(V885_D-1)->A:W-1(V898_D-1)) -Found potential edge: Edge(885->899,w:2.0) between GCTCATCAGCAAGA:W2(V885_D-1) and A:W-1(V899_D-1) -removing vertex A:W-1(V899_D-1) was concatenated into GCTCATCAGCAAGAA:W2(V885_D-1) -Want to move edge Edge(899->900,w:2.0)(A:W-1(V899_D-1)->G:W-1(V900_D-1)) to (GCTCATCAGCAAGAA:W2(V885_D-1)->G:W-1(V900_D-1) - adding edge: GCTCATCAGCAAGAA:W2(V885_D-1) to G:W-1(V900_D-1) -removing edge Edge(899->900,w:2.0)(A:W-1(V899_D-1)->G:W-1(V900_D-1)) -removing edge Edge(885->899,w:2.0)(GCTCATCAGCAAGAA:W2(V885_D-1)->A:W-1(V899_D-1)) -Found potential edge: Edge(885->900,w:2.0) between GCTCATCAGCAAGAA:W2(V885_D-1) and G:W-1(V900_D-1) -removing vertex G:W-1(V900_D-1) was concatenated into GCTCATCAGCAAGAAG:W2(V885_D-1) -Want to move edge Edge(900->901,w:2.0)(G:W-1(V900_D-1)->A:W-1(V901_D-1)) to (GCTCATCAGCAAGAAG:W2(V885_D-1)->A:W-1(V901_D-1) - adding edge: GCTCATCAGCAAGAAG:W2(V885_D-1) to A:W-1(V901_D-1) -removing edge Edge(900->901,w:2.0)(G:W-1(V900_D-1)->A:W-1(V901_D-1)) -removing edge Edge(885->900,w:2.0)(GCTCATCAGCAAGAAG:W2(V885_D-1)->G:W-1(V900_D-1)) -Found potential edge: Edge(885->901,w:2.0) between GCTCATCAGCAAGAAG:W2(V885_D-1) and A:W-1(V901_D-1) -removing vertex A:W-1(V901_D-1) was concatenated into GCTCATCAGCAAGAAGA:W2(V885_D-1) -Want to move edge Edge(901->902,w:2.0)(A:W-1(V901_D-1)->A:W-1(V902_D-1)) to (GCTCATCAGCAAGAAGA:W2(V885_D-1)->A:W-1(V902_D-1) - adding edge: GCTCATCAGCAAGAAGA:W2(V885_D-1) to A:W-1(V902_D-1) -removing edge Edge(901->902,w:2.0)(A:W-1(V901_D-1)->A:W-1(V902_D-1)) -removing edge Edge(885->901,w:2.0)(GCTCATCAGCAAGAAGA:W2(V885_D-1)->A:W-1(V901_D-1)) -Found potential edge: Edge(885->902,w:2.0) between GCTCATCAGCAAGAAGA:W2(V885_D-1) and A:W-1(V902_D-1) -removing vertex A:W-1(V902_D-1) was concatenated into GCTCATCAGCAAGAAGAA:W2(V885_D-1) -Want to move edge Edge(902->903,w:2.0)(A:W-1(V902_D-1)->A:W-1(V903_D-1)) to (GCTCATCAGCAAGAAGAA:W2(V885_D-1)->A:W-1(V903_D-1) - adding edge: GCTCATCAGCAAGAAGAA:W2(V885_D-1) to A:W-1(V903_D-1) -removing edge Edge(902->903,w:2.0)(A:W-1(V902_D-1)->A:W-1(V903_D-1)) -removing edge Edge(885->902,w:2.0)(GCTCATCAGCAAGAAGAA:W2(V885_D-1)->A:W-1(V902_D-1)) -Found potential edge: Edge(885->903,w:2.0) between GCTCATCAGCAAGAAGAA:W2(V885_D-1) and A:W-1(V903_D-1) -removing vertex A:W-1(V903_D-1) was concatenated into GCTCATCAGCAAGAAGAAA:W2(V885_D-1) -Want to move edge Edge(903->904,w:2.0)(A:W-1(V903_D-1)->T:W-1(V904_D-1)) to (GCTCATCAGCAAGAAGAAA:W2(V885_D-1)->T:W-1(V904_D-1) - adding edge: GCTCATCAGCAAGAAGAAA:W2(V885_D-1) to T:W-1(V904_D-1) -removing edge Edge(903->904,w:2.0)(A:W-1(V903_D-1)->T:W-1(V904_D-1)) -removing edge Edge(885->903,w:2.0)(GCTCATCAGCAAGAAGAAA:W2(V885_D-1)->A:W-1(V903_D-1)) -Found potential edge: Edge(885->904,w:2.0) between GCTCATCAGCAAGAAGAAA:W2(V885_D-1) and T:W-1(V904_D-1) -removing vertex T:W-1(V904_D-1) was concatenated into GCTCATCAGCAAGAAGAAAT:W2(V885_D-1) -Want to move edge Edge(904->905,w:2.0)(T:W-1(V904_D-1)->C:W-1(V905_D-1)) to (GCTCATCAGCAAGAAGAAAT:W2(V885_D-1)->C:W-1(V905_D-1) - adding edge: GCTCATCAGCAAGAAGAAAT:W2(V885_D-1) to C:W-1(V905_D-1) -removing edge Edge(904->905,w:2.0)(T:W-1(V904_D-1)->C:W-1(V905_D-1)) -removing edge Edge(885->904,w:2.0)(GCTCATCAGCAAGAAGAAAT:W2(V885_D-1)->T:W-1(V904_D-1)) -Found potential edge: Edge(885->905,w:2.0) between GCTCATCAGCAAGAAGAAAT:W2(V885_D-1) and C:W-1(V905_D-1) -removing vertex C:W-1(V905_D-1) was concatenated into GCTCATCAGCAAGAAGAAATC:W2(V885_D-1) -Want to move edge Edge(905->906,w:2.0)(C:W-1(V905_D-1)->T:W-1(V906_D-1)) to (GCTCATCAGCAAGAAGAAATC:W2(V885_D-1)->T:W-1(V906_D-1) - adding edge: GCTCATCAGCAAGAAGAAATC:W2(V885_D-1) to T:W-1(V906_D-1) -removing edge Edge(905->906,w:2.0)(C:W-1(V905_D-1)->T:W-1(V906_D-1)) -removing edge Edge(885->905,w:2.0)(GCTCATCAGCAAGAAGAAATC:W2(V885_D-1)->C:W-1(V905_D-1)) -Found potential edge: Edge(885->906,w:2.0) between GCTCATCAGCAAGAAGAAATC:W2(V885_D-1) and T:W-1(V906_D-1) -removing vertex T:W-1(V906_D-1) was concatenated into GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1) -Want to move edge Edge(906->907,w:2.0)(T:W-1(V906_D-1)->T:W-1(V907_D-1)) to (GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1)->T:W-1(V907_D-1) - adding edge: GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1) to T:W-1(V907_D-1) -removing edge Edge(906->907,w:2.0)(T:W-1(V906_D-1)->T:W-1(V907_D-1)) -removing edge Edge(885->906,w:2.0)(GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1)->T:W-1(V906_D-1)) -Found potential edge: Edge(885->907,w:2.0) between GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1) and T:W-1(V907_D-1) -removing vertex T:W-1(V907_D-1) was concatenated into GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1) -Want to move edge Edge(907->908,w:2.0)(T:W-1(V907_D-1)->T:W-1(V908_D-1)) to (GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1)->T:W-1(V908_D-1) - adding edge: GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1) to T:W-1(V908_D-1) -removing edge Edge(907->908,w:2.0)(T:W-1(V907_D-1)->T:W-1(V908_D-1)) -removing edge Edge(885->907,w:2.0)(GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1)->T:W-1(V907_D-1)) -Found potential edge: Edge(885->908,w:2.0) between GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1) and T:W-1(V908_D-1) -removing vertex T:W-1(V908_D-1) was concatenated into GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) -Want to move edge Edge(908->440,w:2.0)(T:W-1(V908_D-1)->CTTTCCAAGTA:W8(V440_D-1)) to (GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1)->CTTTCCAAGTA:W8(V440_D-1) - adding edge: GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) to CTTTCCAAGTA:W8(V440_D-1) -removing edge Edge(908->440,w:2.0)(T:W-1(V908_D-1)->CTTTCCAAGTA:W8(V440_D-1)) -removing edge Edge(885->908,w:2.0)(GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1)->T:W-1(V908_D-1)) -Found potential edge: Edge(945->946,w:2.0) between AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) and C:W-1(V946_D-1) -removing vertex C:W-1(V946_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1) -Want to move edge Edge(946->947,w:2.0)(C:W-1(V946_D-1)->C:W-1(V947_D-1)) to (AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1)->C:W-1(V947_D-1) - adding edge: AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1) to C:W-1(V947_D-1) -removing edge Edge(946->947,w:2.0)(C:W-1(V946_D-1)->C:W-1(V947_D-1)) -removing edge Edge(945->946,w:2.0)(AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1)->C:W-1(V946_D-1)) -Found potential edge: Edge(945->947,w:2.0) between AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1) and C:W-1(V947_D-1) -removing vertex C:W-1(V947_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1) -Want to move edge Edge(947->948,w:2.0)(C:W-1(V947_D-1)->T:W-1(V948_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1)->T:W-1(V948_D-1) - adding edge: AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1) to T:W-1(V948_D-1) -removing edge Edge(947->948,w:2.0)(C:W-1(V947_D-1)->T:W-1(V948_D-1)) -removing edge Edge(945->947,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1)->C:W-1(V947_D-1)) -Found potential edge: Edge(945->948,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1) and T:W-1(V948_D-1) -removing vertex T:W-1(V948_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1) -Want to move edge Edge(948->949,w:2.0)(T:W-1(V948_D-1)->C:W-1(V949_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1)->C:W-1(V949_D-1) - adding edge: AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1) to C:W-1(V949_D-1) -removing edge Edge(948->949,w:2.0)(T:W-1(V948_D-1)->C:W-1(V949_D-1)) -removing edge Edge(945->948,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1)->T:W-1(V948_D-1)) -Found potential edge: Edge(945->949,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1) and C:W-1(V949_D-1) -removing vertex C:W-1(V949_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1) -Want to move edge Edge(949->950,w:2.0)(C:W-1(V949_D-1)->A:W-1(V950_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1)->A:W-1(V950_D-1) - adding edge: AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1) to A:W-1(V950_D-1) -removing edge Edge(949->950,w:2.0)(C:W-1(V949_D-1)->A:W-1(V950_D-1)) -removing edge Edge(945->949,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1)->C:W-1(V949_D-1)) -Found potential edge: Edge(945->950,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1) and A:W-1(V950_D-1) -removing vertex A:W-1(V950_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1) -Want to move edge Edge(950->951,w:2.0)(A:W-1(V950_D-1)->T:W-1(V951_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1)->T:W-1(V951_D-1) - adding edge: AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1) to T:W-1(V951_D-1) -removing edge Edge(950->951,w:2.0)(A:W-1(V950_D-1)->T:W-1(V951_D-1)) -removing edge Edge(945->950,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1)->A:W-1(V950_D-1)) -Found potential edge: Edge(945->951,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1) and T:W-1(V951_D-1) -removing vertex T:W-1(V951_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1) -Want to move edge Edge(951->952,w:2.0)(T:W-1(V951_D-1)->C:W-1(V952_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1)->C:W-1(V952_D-1) - adding edge: AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1) to C:W-1(V952_D-1) -removing edge Edge(951->952,w:2.0)(T:W-1(V951_D-1)->C:W-1(V952_D-1)) -removing edge Edge(945->951,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1)->T:W-1(V951_D-1)) -Found potential edge: Edge(945->952,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1) and C:W-1(V952_D-1) -removing vertex C:W-1(V952_D-1) was concatenated into AGAATACAAA...CAGCCTCATC:W0(V945_D-1) -Want to move edge Edge(952->953,w:2.0)(C:W-1(V952_D-1)->A:W-1(V953_D-1)) to (AGAATACAAA...CAGCCTCATC:W0(V945_D-1)->A:W-1(V953_D-1) - adding edge: AGAATACAAA...CAGCCTCATC:W0(V945_D-1) to A:W-1(V953_D-1) -removing edge Edge(952->953,w:2.0)(C:W-1(V952_D-1)->A:W-1(V953_D-1)) -removing edge Edge(945->952,w:2.0)(AGAATACAAA...CAGCCTCATC:W0(V945_D-1)->C:W-1(V952_D-1)) -Found potential edge: Edge(945->953,w:2.0) between AGAATACAAA...CAGCCTCATC:W0(V945_D-1) and A:W-1(V953_D-1) -removing vertex A:W-1(V953_D-1) was concatenated into AGAATACAAA...AGCCTCATCA:W1(V945_D-1) -Want to move edge Edge(953->954,w:2.0)(A:W-1(V953_D-1)->G:W-1(V954_D-1)) to (AGAATACAAA...AGCCTCATCA:W1(V945_D-1)->G:W-1(V954_D-1) - adding edge: AGAATACAAA...AGCCTCATCA:W1(V945_D-1) to G:W-1(V954_D-1) -removing edge Edge(953->954,w:2.0)(A:W-1(V953_D-1)->G:W-1(V954_D-1)) -removing edge Edge(945->953,w:2.0)(AGAATACAAA...AGCCTCATCA:W1(V945_D-1)->A:W-1(V953_D-1)) -Found potential edge: Edge(945->954,w:2.0) between AGAATACAAA...AGCCTCATCA:W1(V945_D-1) and G:W-1(V954_D-1) -removing vertex G:W-1(V954_D-1) was concatenated into AGAATACAAA...GCCTCATCAG:W1(V945_D-1) -Want to move edge Edge(954->955,w:2.0)(G:W-1(V954_D-1)->C:W-1(V955_D-1)) to (AGAATACAAA...GCCTCATCAG:W1(V945_D-1)->C:W-1(V955_D-1) - adding edge: AGAATACAAA...GCCTCATCAG:W1(V945_D-1) to C:W-1(V955_D-1) -removing edge Edge(954->955,w:2.0)(G:W-1(V954_D-1)->C:W-1(V955_D-1)) -removing edge Edge(945->954,w:2.0)(AGAATACAAA...GCCTCATCAG:W1(V945_D-1)->G:W-1(V954_D-1)) -Found potential edge: Edge(945->955,w:2.0) between AGAATACAAA...GCCTCATCAG:W1(V945_D-1) and C:W-1(V955_D-1) -removing vertex C:W-1(V955_D-1) was concatenated into AGAATACAAA...CCTCATCAGC:W1(V945_D-1) -Want to move edge Edge(955->956,w:2.0)(C:W-1(V955_D-1)->A:W-1(V956_D-1)) to (AGAATACAAA...CCTCATCAGC:W1(V945_D-1)->A:W-1(V956_D-1) - adding edge: AGAATACAAA...CCTCATCAGC:W1(V945_D-1) to A:W-1(V956_D-1) -removing edge Edge(955->956,w:2.0)(C:W-1(V955_D-1)->A:W-1(V956_D-1)) -removing edge Edge(945->955,w:2.0)(AGAATACAAA...CCTCATCAGC:W1(V945_D-1)->C:W-1(V955_D-1)) -Found potential edge: Edge(945->956,w:2.0) between AGAATACAAA...CCTCATCAGC:W1(V945_D-1) and A:W-1(V956_D-1) -removing vertex A:W-1(V956_D-1) was concatenated into AGAATACAAA...CTCATCAGCA:W1(V945_D-1) -Want to move edge Edge(956->957,w:2.0)(A:W-1(V956_D-1)->G:W-1(V957_D-1)) to (AGAATACAAA...CTCATCAGCA:W1(V945_D-1)->G:W-1(V957_D-1) - adding edge: AGAATACAAA...CTCATCAGCA:W1(V945_D-1) to G:W-1(V957_D-1) -removing edge Edge(956->957,w:2.0)(A:W-1(V956_D-1)->G:W-1(V957_D-1)) -removing edge Edge(945->956,w:2.0)(AGAATACAAA...CTCATCAGCA:W1(V945_D-1)->A:W-1(V956_D-1)) -Found potential edge: Edge(945->957,w:2.0) between AGAATACAAA...CTCATCAGCA:W1(V945_D-1) and G:W-1(V957_D-1) -removing vertex G:W-1(V957_D-1) was concatenated into AGAATACAAA...TCATCAGCAG:W1(V945_D-1) -Want to move edge Edge(957->958,w:2.0)(G:W-1(V957_D-1)->G:W-1(V958_D-1)) to (AGAATACAAA...TCATCAGCAG:W1(V945_D-1)->G:W-1(V958_D-1) - adding edge: AGAATACAAA...TCATCAGCAG:W1(V945_D-1) to G:W-1(V958_D-1) -removing edge Edge(957->958,w:2.0)(G:W-1(V957_D-1)->G:W-1(V958_D-1)) -removing edge Edge(945->957,w:2.0)(AGAATACAAA...TCATCAGCAG:W1(V945_D-1)->G:W-1(V957_D-1)) -Found potential edge: Edge(945->958,w:2.0) between AGAATACAAA...TCATCAGCAG:W1(V945_D-1) and G:W-1(V958_D-1) -removing vertex G:W-1(V958_D-1) was concatenated into AGAATACAAA...CATCAGCAGG:W1(V945_D-1) -Want to move edge Edge(958->959,w:2.0)(G:W-1(V958_D-1)->A:W-1(V959_D-1)) to (AGAATACAAA...CATCAGCAGG:W1(V945_D-1)->A:W-1(V959_D-1) - adding edge: AGAATACAAA...CATCAGCAGG:W1(V945_D-1) to A:W-1(V959_D-1) -removing edge Edge(958->959,w:2.0)(G:W-1(V958_D-1)->A:W-1(V959_D-1)) -removing edge Edge(945->958,w:2.0)(AGAATACAAA...CATCAGCAGG:W1(V945_D-1)->G:W-1(V958_D-1)) -Found potential edge: Edge(945->959,w:2.0) between AGAATACAAA...CATCAGCAGG:W1(V945_D-1) and A:W-1(V959_D-1) -removing vertex A:W-1(V959_D-1) was concatenated into AGAATACAAA...ATCAGCAGGA:W1(V945_D-1) -Want to move edge Edge(959->960,w:2.0)(A:W-1(V959_D-1)->A:W-1(V960_D-1)) to (AGAATACAAA...ATCAGCAGGA:W1(V945_D-1)->A:W-1(V960_D-1) - adding edge: AGAATACAAA...ATCAGCAGGA:W1(V945_D-1) to A:W-1(V960_D-1) -removing edge Edge(959->960,w:2.0)(A:W-1(V959_D-1)->A:W-1(V960_D-1)) -removing edge Edge(945->959,w:2.0)(AGAATACAAA...ATCAGCAGGA:W1(V945_D-1)->A:W-1(V959_D-1)) -Found potential edge: Edge(945->960,w:2.0) between AGAATACAAA...ATCAGCAGGA:W1(V945_D-1) and A:W-1(V960_D-1) -removing vertex A:W-1(V960_D-1) was concatenated into AGAATACAAA...TCAGCAGGAA:W1(V945_D-1) -Want to move edge Edge(960->961,w:2.0)(A:W-1(V960_D-1)->G:W-1(V961_D-1)) to (AGAATACAAA...TCAGCAGGAA:W1(V945_D-1)->G:W-1(V961_D-1) - adding edge: AGAATACAAA...TCAGCAGGAA:W1(V945_D-1) to G:W-1(V961_D-1) -removing edge Edge(960->961,w:2.0)(A:W-1(V960_D-1)->G:W-1(V961_D-1)) -removing edge Edge(945->960,w:2.0)(AGAATACAAA...TCAGCAGGAA:W1(V945_D-1)->A:W-1(V960_D-1)) -Found potential edge: Edge(945->961,w:2.0) between AGAATACAAA...TCAGCAGGAA:W1(V945_D-1) and G:W-1(V961_D-1) -removing vertex G:W-1(V961_D-1) was concatenated into AGAATACAAA...CAGCAGGAAG:W1(V945_D-1) -Want to move edge Edge(961->962,w:2.0)(G:W-1(V961_D-1)->A:W-1(V962_D-1)) to (AGAATACAAA...CAGCAGGAAG:W1(V945_D-1)->A:W-1(V962_D-1) - adding edge: AGAATACAAA...CAGCAGGAAG:W1(V945_D-1) to A:W-1(V962_D-1) -removing edge Edge(961->962,w:2.0)(G:W-1(V961_D-1)->A:W-1(V962_D-1)) -removing edge Edge(945->961,w:2.0)(AGAATACAAA...CAGCAGGAAG:W1(V945_D-1)->G:W-1(V961_D-1)) -Found potential edge: Edge(945->962,w:2.0) between AGAATACAAA...CAGCAGGAAG:W1(V945_D-1) and A:W-1(V962_D-1) -removing vertex A:W-1(V962_D-1) was concatenated into AGAATACAAA...AGCAGGAAGA:W1(V945_D-1) -Want to move edge Edge(962->963,w:2.0)(A:W-1(V962_D-1)->A:W-1(V963_D-1)) to (AGAATACAAA...AGCAGGAAGA:W1(V945_D-1)->A:W-1(V963_D-1) - adding edge: AGAATACAAA...AGCAGGAAGA:W1(V945_D-1) to A:W-1(V963_D-1) -removing edge Edge(962->963,w:2.0)(A:W-1(V962_D-1)->A:W-1(V963_D-1)) -removing edge Edge(945->962,w:2.0)(AGAATACAAA...AGCAGGAAGA:W1(V945_D-1)->A:W-1(V962_D-1)) -Found potential edge: Edge(945->963,w:2.0) between AGAATACAAA...AGCAGGAAGA:W1(V945_D-1) and A:W-1(V963_D-1) -removing vertex A:W-1(V963_D-1) was concatenated into AGAATACAAA...GCAGGAAGAA:W1(V945_D-1) -Want to move edge Edge(963->964,w:2.0)(A:W-1(V963_D-1)->A:W-1(V964_D-1)) to (AGAATACAAA...GCAGGAAGAA:W1(V945_D-1)->A:W-1(V964_D-1) - adding edge: AGAATACAAA...GCAGGAAGAA:W1(V945_D-1) to A:W-1(V964_D-1) -removing edge Edge(963->964,w:2.0)(A:W-1(V963_D-1)->A:W-1(V964_D-1)) -removing edge Edge(945->963,w:2.0)(AGAATACAAA...GCAGGAAGAA:W1(V945_D-1)->A:W-1(V963_D-1)) -Found potential edge: Edge(945->964,w:2.0) between AGAATACAAA...GCAGGAAGAA:W1(V945_D-1) and A:W-1(V964_D-1) -removing vertex A:W-1(V964_D-1) was concatenated into AGAATACAAA...CAGGAAGAAA:W1(V945_D-1) -Want to move edge Edge(964->965,w:2.0)(A:W-1(V964_D-1)->T:W-1(V965_D-1)) to (AGAATACAAA...CAGGAAGAAA:W1(V945_D-1)->T:W-1(V965_D-1) - adding edge: AGAATACAAA...CAGGAAGAAA:W1(V945_D-1) to T:W-1(V965_D-1) -removing edge Edge(964->965,w:2.0)(A:W-1(V964_D-1)->T:W-1(V965_D-1)) -removing edge Edge(945->964,w:2.0)(AGAATACAAA...CAGGAAGAAA:W1(V945_D-1)->A:W-1(V964_D-1)) -Found potential edge: Edge(945->965,w:2.0) between AGAATACAAA...CAGGAAGAAA:W1(V945_D-1) and T:W-1(V965_D-1) -removing vertex T:W-1(V965_D-1) was concatenated into AGAATACAAA...AGGAAGAAAT:W1(V945_D-1) -Want to move edge Edge(965->966,w:2.0)(T:W-1(V965_D-1)->C:W-1(V966_D-1)) to (AGAATACAAA...AGGAAGAAAT:W1(V945_D-1)->C:W-1(V966_D-1) - adding edge: AGAATACAAA...AGGAAGAAAT:W1(V945_D-1) to C:W-1(V966_D-1) -removing edge Edge(965->966,w:2.0)(T:W-1(V965_D-1)->C:W-1(V966_D-1)) -removing edge Edge(945->965,w:2.0)(AGAATACAAA...AGGAAGAAAT:W1(V945_D-1)->T:W-1(V965_D-1)) -Found potential edge: Edge(945->966,w:2.0) between AGAATACAAA...AGGAAGAAAT:W1(V945_D-1) and C:W-1(V966_D-1) -removing vertex C:W-1(V966_D-1) was concatenated into AGAATACAAA...GGAAGAAATC:W1(V945_D-1) -Want to move edge Edge(966->967,w:2.0)(C:W-1(V966_D-1)->T:W-1(V967_D-1)) to (AGAATACAAA...GGAAGAAATC:W1(V945_D-1)->T:W-1(V967_D-1) - adding edge: AGAATACAAA...GGAAGAAATC:W1(V945_D-1) to T:W-1(V967_D-1) -removing edge Edge(966->967,w:2.0)(C:W-1(V966_D-1)->T:W-1(V967_D-1)) -removing edge Edge(945->966,w:2.0)(AGAATACAAA...GGAAGAAATC:W1(V945_D-1)->C:W-1(V966_D-1)) -Found potential edge: Edge(945->967,w:2.0) between AGAATACAAA...GGAAGAAATC:W1(V945_D-1) and T:W-1(V967_D-1) -removing vertex T:W-1(V967_D-1) was concatenated into AGAATACAAA...GAAGAAATCT:W1(V945_D-1) -Want to move edge Edge(967->968,w:2.0)(T:W-1(V967_D-1)->T:W-1(V968_D-1)) to (AGAATACAAA...GAAGAAATCT:W1(V945_D-1)->T:W-1(V968_D-1) - adding edge: AGAATACAAA...GAAGAAATCT:W1(V945_D-1) to T:W-1(V968_D-1) -removing edge Edge(967->968,w:2.0)(T:W-1(V967_D-1)->T:W-1(V968_D-1)) -removing edge Edge(945->967,w:2.0)(AGAATACAAA...GAAGAAATCT:W1(V945_D-1)->T:W-1(V967_D-1)) -Found potential edge: Edge(945->968,w:2.0) between AGAATACAAA...GAAGAAATCT:W1(V945_D-1) and T:W-1(V968_D-1) -removing vertex T:W-1(V968_D-1) was concatenated into AGAATACAAA...AAGAAATCTT:W1(V945_D-1) -Want to move edge Edge(968->969,w:2.0)(T:W-1(V968_D-1)->T:W-1(V969_D-1)) to (AGAATACAAA...AAGAAATCTT:W1(V945_D-1)->T:W-1(V969_D-1) - adding edge: AGAATACAAA...AAGAAATCTT:W1(V945_D-1) to T:W-1(V969_D-1) -removing edge Edge(968->969,w:2.0)(T:W-1(V968_D-1)->T:W-1(V969_D-1)) -removing edge Edge(945->968,w:2.0)(AGAATACAAA...AAGAAATCTT:W1(V945_D-1)->T:W-1(V968_D-1)) -Found potential edge: Edge(945->969,w:2.0) between AGAATACAAA...AAGAAATCTT:W1(V945_D-1) and T:W-1(V969_D-1) -removing vertex T:W-1(V969_D-1) was concatenated into AGAATACAAA...AGAAATCTTT:W1(V945_D-1) -Want to move edge Edge(969->970,w:2.0)(T:W-1(V969_D-1)->C:W-1(V970_D-1)) to (AGAATACAAA...AGAAATCTTT:W1(V945_D-1)->C:W-1(V970_D-1) - adding edge: AGAATACAAA...AGAAATCTTT:W1(V945_D-1) to C:W-1(V970_D-1) -removing edge Edge(969->970,w:2.0)(T:W-1(V969_D-1)->C:W-1(V970_D-1)) -removing edge Edge(945->969,w:2.0)(AGAATACAAA...AGAAATCTTT:W1(V945_D-1)->T:W-1(V969_D-1)) -Found potential edge: Edge(945->970,w:2.0) between AGAATACAAA...AGAAATCTTT:W1(V945_D-1) and C:W-1(V970_D-1) -removing vertex C:W-1(V970_D-1) was concatenated into AGAATACAAA...GAAATCTTTC:W1(V945_D-1) -Want to move edge Edge(970->971,w:2.0)(C:W-1(V970_D-1)->T:W-1(V971_D-1)) to (AGAATACAAA...GAAATCTTTC:W1(V945_D-1)->T:W-1(V971_D-1) - adding edge: AGAATACAAA...GAAATCTTTC:W1(V945_D-1) to T:W-1(V971_D-1) -removing edge Edge(970->971,w:2.0)(C:W-1(V970_D-1)->T:W-1(V971_D-1)) -removing edge Edge(945->970,w:2.0)(AGAATACAAA...GAAATCTTTC:W1(V945_D-1)->C:W-1(V970_D-1)) -Found potential edge: Edge(945->971,w:2.0) between AGAATACAAA...GAAATCTTTC:W1(V945_D-1) and T:W-1(V971_D-1) -removing vertex T:W-1(V971_D-1) was concatenated into AGAATACAAA...AAATCTTTCT:W1(V945_D-1) -Want to move edge Edge(971->972,w:2.0)(T:W-1(V971_D-1)->T:W-1(V972_D-1)) to (AGAATACAAA...AAATCTTTCT:W1(V945_D-1)->T:W-1(V972_D-1) - adding edge: AGAATACAAA...AAATCTTTCT:W1(V945_D-1) to T:W-1(V972_D-1) -removing edge Edge(971->972,w:2.0)(T:W-1(V971_D-1)->T:W-1(V972_D-1)) -removing edge Edge(945->971,w:2.0)(AGAATACAAA...AAATCTTTCT:W1(V945_D-1)->T:W-1(V971_D-1)) -Found potential edge: Edge(945->972,w:2.0) between AGAATACAAA...AAATCTTTCT:W1(V945_D-1) and T:W-1(V972_D-1) -removing vertex T:W-1(V972_D-1) was concatenated into AGAATACAAA...AATCTTTCTT:W1(V945_D-1) -Want to move edge Edge(972->973,w:2.0)(T:W-1(V972_D-1)->T:W-1(V973_D-1)) to (AGAATACAAA...AATCTTTCTT:W1(V945_D-1)->T:W-1(V973_D-1) - adding edge: AGAATACAAA...AATCTTTCTT:W1(V945_D-1) to T:W-1(V973_D-1) -removing edge Edge(972->973,w:2.0)(T:W-1(V972_D-1)->T:W-1(V973_D-1)) -removing edge Edge(945->972,w:2.0)(AGAATACAAA...AATCTTTCTT:W1(V945_D-1)->T:W-1(V972_D-1)) -Found potential edge: Edge(945->973,w:2.0) between AGAATACAAA...AATCTTTCTT:W1(V945_D-1) and T:W-1(V973_D-1) -removing vertex T:W-1(V973_D-1) was concatenated into AGAATACAAA...ATCTTTCTTT:W1(V945_D-1) -Want to move edge Edge(973->974,w:2.0)(T:W-1(V973_D-1)->C:W-1(V974_D-1)) to (AGAATACAAA...ATCTTTCTTT:W1(V945_D-1)->C:W-1(V974_D-1) - adding edge: AGAATACAAA...ATCTTTCTTT:W1(V945_D-1) to C:W-1(V974_D-1) -removing edge Edge(973->974,w:2.0)(T:W-1(V973_D-1)->C:W-1(V974_D-1)) -removing edge Edge(945->973,w:2.0)(AGAATACAAA...ATCTTTCTTT:W1(V945_D-1)->T:W-1(V973_D-1)) -Found potential edge: Edge(945->974,w:2.0) between AGAATACAAA...ATCTTTCTTT:W1(V945_D-1) and C:W-1(V974_D-1) -removing vertex C:W-1(V974_D-1) was concatenated into AGAATACAAA...TCTTTCTTTC:W1(V945_D-1) -Want to move edge Edge(974->975,w:2.0)(C:W-1(V974_D-1)->C:W-1(V975_D-1)) to (AGAATACAAA...TCTTTCTTTC:W1(V945_D-1)->C:W-1(V975_D-1) - adding edge: AGAATACAAA...TCTTTCTTTC:W1(V945_D-1) to C:W-1(V975_D-1) -removing edge Edge(974->975,w:2.0)(C:W-1(V974_D-1)->C:W-1(V975_D-1)) -removing edge Edge(945->974,w:2.0)(AGAATACAAA...TCTTTCTTTC:W1(V945_D-1)->C:W-1(V974_D-1)) -Found potential edge: Edge(945->975,w:2.0) between AGAATACAAA...TCTTTCTTTC:W1(V945_D-1) and C:W-1(V975_D-1) -removing vertex C:W-1(V975_D-1) was concatenated into AGAATACAAA...CTTTCTTTCC:W1(V945_D-1) -Want to move edge Edge(975->976,w:2.0)(C:W-1(V975_D-1)->A:W-1(V976_D-1)) to (AGAATACAAA...CTTTCTTTCC:W1(V945_D-1)->A:W-1(V976_D-1) - adding edge: AGAATACAAA...CTTTCTTTCC:W1(V945_D-1) to A:W-1(V976_D-1) -removing edge Edge(975->976,w:2.0)(C:W-1(V975_D-1)->A:W-1(V976_D-1)) -removing edge Edge(945->975,w:2.0)(AGAATACAAA...CTTTCTTTCC:W1(V945_D-1)->C:W-1(V975_D-1)) -Found potential edge: Edge(945->976,w:2.0) between AGAATACAAA...CTTTCTTTCC:W1(V945_D-1) and A:W-1(V976_D-1) -removing vertex A:W-1(V976_D-1) was concatenated into AGAATACAAA...TTTCTTTCCA:W1(V945_D-1) -Want to move edge Edge(976->977,w:2.0)(A:W-1(V976_D-1)->A:W-1(V977_D-1)) to (AGAATACAAA...TTTCTTTCCA:W1(V945_D-1)->A:W-1(V977_D-1) - adding edge: AGAATACAAA...TTTCTTTCCA:W1(V945_D-1) to A:W-1(V977_D-1) -removing edge Edge(976->977,w:2.0)(A:W-1(V976_D-1)->A:W-1(V977_D-1)) -removing edge Edge(945->976,w:2.0)(AGAATACAAA...TTTCTTTCCA:W1(V945_D-1)->A:W-1(V976_D-1)) -Found potential edge: Edge(945->977,w:2.0) between AGAATACAAA...TTTCTTTCCA:W1(V945_D-1) and A:W-1(V977_D-1) -removing vertex A:W-1(V977_D-1) was concatenated into AGAATACAAA...TTCTTTCCAA:W1(V945_D-1) -Want to move edge Edge(977->978,w:2.0)(A:W-1(V977_D-1)->G:W-1(V978_D-1)) to (AGAATACAAA...TTCTTTCCAA:W1(V945_D-1)->G:W-1(V978_D-1) - adding edge: AGAATACAAA...TTCTTTCCAA:W1(V945_D-1) to G:W-1(V978_D-1) -removing edge Edge(977->978,w:2.0)(A:W-1(V977_D-1)->G:W-1(V978_D-1)) -removing edge Edge(945->977,w:2.0)(AGAATACAAA...TTCTTTCCAA:W1(V945_D-1)->A:W-1(V977_D-1)) -Found potential edge: Edge(945->978,w:2.0) between AGAATACAAA...TTCTTTCCAA:W1(V945_D-1) and G:W-1(V978_D-1) -removing vertex G:W-1(V978_D-1) was concatenated into AGAATACAAA...TCTTTCCAAG:W1(V945_D-1) -Want to move edge Edge(978->979,w:2.0)(G:W-1(V978_D-1)->T:W-1(V979_D-1)) to (AGAATACAAA...TCTTTCCAAG:W1(V945_D-1)->T:W-1(V979_D-1) - adding edge: AGAATACAAA...TCTTTCCAAG:W1(V945_D-1) to T:W-1(V979_D-1) -removing edge Edge(978->979,w:2.0)(G:W-1(V978_D-1)->T:W-1(V979_D-1)) -removing edge Edge(945->978,w:2.0)(AGAATACAAA...TCTTTCCAAG:W1(V945_D-1)->G:W-1(V978_D-1)) -Found potential edge: Edge(945->979,w:2.0) between AGAATACAAA...TCTTTCCAAG:W1(V945_D-1) and T:W-1(V979_D-1) -removing vertex T:W-1(V979_D-1) was concatenated into AGAATACAAA...CTTTCCAAGT:W1(V945_D-1) -Want to move edge Edge(979->980,w:2.0)(T:W-1(V979_D-1)->A:W-1(V980_D-1)) to (AGAATACAAA...CTTTCCAAGT:W1(V945_D-1)->A:W-1(V980_D-1) - adding edge: AGAATACAAA...CTTTCCAAGT:W1(V945_D-1) to A:W-1(V980_D-1) -removing edge Edge(979->980,w:2.0)(T:W-1(V979_D-1)->A:W-1(V980_D-1)) -removing edge Edge(945->979,w:2.0)(AGAATACAAA...CTTTCCAAGT:W1(V945_D-1)->T:W-1(V979_D-1)) -Found potential edge: Edge(945->980,w:2.0) between AGAATACAAA...CTTTCCAAGT:W1(V945_D-1) and A:W-1(V980_D-1) -removing vertex A:W-1(V980_D-1) was concatenated into AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) -Want to move edge Edge(980->451,w:2.0)(A:W-1(V980_D-1)->GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)) to (AGAATACAAA...TTTCCAAGTA:W1(V945_D-1)->GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) - adding edge: AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) to GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) -removing edge Edge(980->451,w:2.0)(A:W-1(V980_D-1)->GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)) -removing edge Edge(945->980,w:2.0)(AGAATACAAA...TTTCCAAGTA:W1(V945_D-1)->A:W-1(V980_D-1)) -## Node descriptions after linear compaction: -## Node descriptions: -GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) Preds: [] Succ: [CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) ] -CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) ] Succ: [CTTTCCAAGTA:W8(V440_D-1) ] -CTTTCCAAGTA:W8(V440_D-1) Preds: [CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) ] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] -GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) Preds: [AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) CTTTCCAAGTA:W8(V440_D-1) ] Succ: [GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) ] -GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) ] -AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) Preds: [GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) ] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) ] -AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) Preds: [GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) ] Succ: [] -GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) Preds: [] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) ] -CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) ] -GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) ] Succ: [CTTTCCAAGTA:W8(V440_D-1) ] -AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) Preds: [] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] -SNP_collapse candidates: GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D2) len: 24 and CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D2) len: 24 -SNP_collapse: merging the node 813 to the node 525 -SNP_collapse candidates: CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D1) len: 24 and GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D1) len: 24 -SNP_collapse: merging the node 885 to the node 416 -removing the single nt variation vertex 813 -removing the single nt variation vertex 525 -removing the single nt variation vertex 885 -removing the single nt variation vertex 416 -SECTION -==================== -Removing small components. -==================== - - -ComponentDivision: 0 contains the following vertices: -node_id: 945 -node_id: 786 -node_id: 451 -node_id: 981 -node_id: 549 -node_id: 982 -node_id: 440 -node_id: 380 -node_id: 717 -SubComp: 945 has 9 nodes; total coverage: 2212 average: 4.3118906 -number of good components: 1 -adding to 380: Location of original node 380 in index 0 -adding to 381: Location of original node 380 in index 1 -adding to 382: Location of original node 380 in index 2 -adding to 383: Location of original node 380 in index 3 -adding to 384: Location of original node 380 in index 4 -adding to 385: Location of original node 380 in index 5 -adding to 386: Location of original node 380 in index 6 -adding to 387: Location of original node 380 in index 7 -adding to 388: Location of original node 380 in index 8 -adding to 389: Location of original node 380 in index 9 -adding to 390: Location of original node 380 in index 10 -adding to 391: Location of original node 380 in index 11 -adding to 392: Location of original node 380 in index 12 -adding to 393: Location of original node 380 in index 13 -adding to 394: Location of original node 380 in index 14 -adding to 395: Location of original node 380 in index 15 -adding to 396: Location of original node 380 in index 16 -adding to 397: Location of original node 380 in index 17 -adding to 398: Location of original node 380 in index 18 -adding to 399: Location of original node 380 in index 19 -adding to 400: Location of original node 380 in index 20 -adding to 401: Location of original node 380 in index 21 -adding to 402: Location of original node 380 in index 22 -adding to 403: Location of original node 380 in index 23 -adding to 404: Location of original node 380 in index 24 -adding to 405: Location of original node 380 in index 25 -adding to 406: Location of original node 380 in index 26 -adding to 407: Location of original node 380 in index 27 -adding to 408: Location of original node 380 in index 28 -adding to 409: Location of original node 380 in index 29 -adding to 410: Location of original node 380 in index 30 -adding to 411: Location of original node 380 in index 31 -adding to 412: Location of original node 380 in index 32 -adding to 413: Location of original node 380 in index 33 -adding to 414: Location of original node 380 in index 34 -adding to 415: Location of original node 380 in index 35 -adding to 440: Location of original node 440 in index 0 -adding to 441: Location of original node 440 in index 1 -adding to 442: Location of original node 440 in index 2 -adding to 443: Location of original node 440 in index 3 -adding to 444: Location of original node 440 in index 4 -adding to 445: Location of original node 440 in index 5 -adding to 446: Location of original node 440 in index 6 -adding to 447: Location of original node 440 in index 7 -adding to 448: Location of original node 440 in index 8 -adding to 449: Location of original node 440 in index 9 -adding to 450: Location of original node 440 in index 10 -adding to 451: Location of original node 451 in index 0 -adding to 452: Location of original node 451 in index 1 -adding to 453: Location of original node 451 in index 2 -adding to 454: Location of original node 451 in index 3 -adding to 455: Location of original node 451 in index 4 -adding to 456: Location of original node 451 in index 5 -adding to 457: Location of original node 451 in index 6 -adding to 458: Location of original node 451 in index 7 -adding to 459: Location of original node 451 in index 8 -adding to 460: Location of original node 451 in index 9 -adding to 461: Location of original node 451 in index 10 -adding to 462: Location of original node 451 in index 11 -adding to 463: Location of original node 451 in index 12 -adding to 464: Location of original node 451 in index 13 -adding to 465: Location of original node 451 in index 14 -adding to 466: Location of original node 451 in index 15 -adding to 467: Location of original node 451 in index 16 -adding to 468: Location of original node 451 in index 17 -adding to 469: Location of original node 451 in index 18 -adding to 470: Location of original node 451 in index 19 -adding to 471: Location of original node 451 in index 20 -adding to 472: Location of original node 451 in index 21 -adding to 473: Location of original node 451 in index 22 -adding to 474: Location of original node 451 in index 23 -adding to 475: Location of original node 451 in index 24 -adding to 476: Location of original node 451 in index 25 -adding to 477: Location of original node 451 in index 26 -adding to 478: Location of original node 451 in index 27 -adding to 479: Location of original node 451 in index 28 -adding to 480: Location of original node 451 in index 29 -adding to 481: Location of original node 451 in index 30 -adding to 482: Location of original node 451 in index 31 -adding to 483: Location of original node 451 in index 32 -adding to 484: Location of original node 451 in index 33 -adding to 485: Location of original node 451 in index 34 -adding to 486: Location of original node 451 in index 35 -adding to 487: Location of original node 451 in index 36 -adding to 488: Location of original node 451 in index 37 -adding to 489: Location of original node 451 in index 38 -adding to 490: Location of original node 451 in index 39 -adding to 491: Location of original node 451 in index 40 -adding to 492: Location of original node 451 in index 41 -adding to 493: Location of original node 451 in index 42 -adding to 494: Location of original node 451 in index 43 -adding to 495: Location of original node 451 in index 44 -adding to 496: Location of original node 451 in index 45 -adding to 497: Location of original node 451 in index 46 -adding to 498: Location of original node 451 in index 47 -adding to 499: Location of original node 451 in index 48 -adding to 500: Location of original node 451 in index 49 -adding to 501: Location of original node 451 in index 50 -adding to 502: Location of original node 451 in index 51 -adding to 503: Location of original node 451 in index 52 -adding to 504: Location of original node 451 in index 53 -adding to 505: Location of original node 451 in index 54 -adding to 506: Location of original node 451 in index 55 -adding to 507: Location of original node 451 in index 56 -adding to 508: Location of original node 451 in index 57 -adding to 509: Location of original node 451 in index 58 -adding to 510: Location of original node 451 in index 59 -adding to 511: Location of original node 451 in index 60 -adding to 512: Location of original node 451 in index 61 -adding to 513: Location of original node 451 in index 62 -adding to 514: Location of original node 451 in index 63 -adding to 515: Location of original node 451 in index 64 -adding to 516: Location of original node 451 in index 65 -adding to 517: Location of original node 451 in index 66 -adding to 518: Location of original node 451 in index 67 -adding to 519: Location of original node 451 in index 68 -adding to 520: Location of original node 451 in index 69 -adding to 521: Location of original node 451 in index 70 -adding to 522: Location of original node 451 in index 71 -adding to 523: Location of original node 451 in index 72 -adding to 524: Location of original node 451 in index 73 -adding to 549: Location of original node 549 in index 0 -adding to 550: Location of original node 549 in index 1 -adding to 551: Location of original node 549 in index 2 -adding to 552: Location of original node 549 in index 3 -adding to 553: Location of original node 549 in index 4 -adding to 554: Location of original node 549 in index 5 -adding to 555: Location of original node 549 in index 6 -adding to 556: Location of original node 549 in index 7 -adding to 557: Location of original node 549 in index 8 -adding to 558: Location of original node 549 in index 9 -adding to 559: Location of original node 549 in index 10 -adding to 560: Location of original node 549 in index 11 -adding to 561: Location of original node 549 in index 12 -adding to 562: Location of original node 549 in index 13 -adding to 563: Location of original node 549 in index 14 -adding to 564: Location of original node 549 in index 15 -adding to 565: Location of original node 549 in index 16 -adding to 566: Location of original node 549 in index 17 -adding to 567: Location of original node 549 in index 18 -adding to 568: Location of original node 549 in index 19 -adding to 569: Location of original node 549 in index 20 -adding to 570: Location of original node 549 in index 21 -adding to 571: Location of original node 549 in index 22 -adding to 572: Location of original node 549 in index 23 -adding to 573: Location of original node 549 in index 24 -adding to 574: Location of original node 549 in index 25 -adding to 575: Location of original node 549 in index 26 -adding to 576: Location of original node 549 in index 27 -adding to 577: Location of original node 549 in index 28 -adding to 578: Location of original node 549 in index 29 -adding to 579: Location of original node 549 in index 30 -adding to 580: Location of original node 549 in index 31 -adding to 581: Location of original node 549 in index 32 -adding to 582: Location of original node 549 in index 33 -adding to 583: Location of original node 549 in index 34 -adding to 584: Location of original node 549 in index 35 -adding to 585: Location of original node 549 in index 36 -adding to 586: Location of original node 549 in index 37 -adding to 587: Location of original node 549 in index 38 -adding to 588: Location of original node 549 in index 39 -adding to 589: Location of original node 549 in index 40 -adding to 590: Location of original node 549 in index 41 -adding to 591: Location of original node 549 in index 42 -adding to 592: Location of original node 549 in index 43 -adding to 593: Location of original node 549 in index 44 -adding to 594: Location of original node 549 in index 45 -adding to 595: Location of original node 549 in index 46 -adding to 596: Location of original node 549 in index 47 -adding to 597: Location of original node 549 in index 48 -adding to 598: Location of original node 549 in index 49 -adding to 599: Location of original node 549 in index 50 -adding to 600: Location of original node 549 in index 51 -adding to 601: Location of original node 549 in index 52 -adding to 602: Location of original node 549 in index 53 -adding to 603: Location of original node 549 in index 54 -adding to 604: Location of original node 549 in index 55 -adding to 605: Location of original node 549 in index 56 -adding to 606: Location of original node 549 in index 57 -adding to 607: Location of original node 549 in index 58 -adding to 608: Location of original node 549 in index 59 -adding to 609: Location of original node 549 in index 60 -adding to 610: Location of original node 549 in index 61 -adding to 611: Location of original node 549 in index 62 -adding to 612: Location of original node 549 in index 63 -adding to 613: Location of original node 549 in index 64 -adding to 614: Location of original node 549 in index 65 -adding to 615: Location of original node 549 in index 66 -adding to 616: Location of original node 549 in index 67 -adding to 617: Location of original node 549 in index 68 -adding to 618: Location of original node 549 in index 69 -adding to 619: Location of original node 549 in index 70 -adding to 620: Location of original node 549 in index 71 -adding to 621: Location of original node 549 in index 72 -adding to 622: Location of original node 549 in index 73 -adding to 623: Location of original node 549 in index 74 -adding to 624: Location of original node 549 in index 75 -adding to 625: Location of original node 549 in index 76 -adding to 626: Location of original node 549 in index 77 -adding to 627: Location of original node 549 in index 78 -adding to 628: Location of original node 549 in index 79 -adding to 629: Location of original node 549 in index 80 -adding to 630: Location of original node 549 in index 81 -adding to 631: Location of original node 549 in index 82 -adding to 632: Location of original node 549 in index 83 -adding to 633: Location of original node 549 in index 84 -adding to 634: Location of original node 549 in index 85 -adding to 635: Location of original node 549 in index 86 -adding to 636: Location of original node 549 in index 87 -adding to 637: Location of original node 549 in index 88 -adding to 638: Location of original node 549 in index 89 -adding to 639: Location of original node 549 in index 90 -adding to 640: Location of original node 549 in index 91 -adding to 641: Location of original node 549 in index 92 -adding to 642: Location of original node 549 in index 93 -adding to 643: Location of original node 549 in index 94 -adding to 644: Location of original node 549 in index 95 -adding to 645: Location of original node 549 in index 96 -adding to 646: Location of original node 549 in index 97 -adding to 647: Location of original node 549 in index 98 -adding to 648: Location of original node 549 in index 99 -adding to 649: Location of original node 549 in index 100 -adding to 650: Location of original node 549 in index 101 -adding to 651: Location of original node 549 in index 102 -adding to 652: Location of original node 549 in index 103 -adding to 653: Location of original node 549 in index 104 -adding to 654: Location of original node 549 in index 105 -adding to 655: Location of original node 549 in index 106 -adding to 656: Location of original node 549 in index 107 -adding to 657: Location of original node 549 in index 108 -adding to 658: Location of original node 549 in index 109 -adding to 659: Location of original node 549 in index 110 -adding to 660: Location of original node 549 in index 111 -adding to 661: Location of original node 549 in index 112 -adding to 662: Location of original node 549 in index 113 -adding to 663: Location of original node 549 in index 114 -adding to 664: Location of original node 549 in index 115 -adding to 665: Location of original node 549 in index 116 -adding to 666: Location of original node 549 in index 117 -adding to 667: Location of original node 549 in index 118 -adding to 668: Location of original node 549 in index 119 -adding to 669: Location of original node 549 in index 120 -adding to 670: Location of original node 549 in index 121 -adding to 671: Location of original node 549 in index 122 -adding to 672: Location of original node 549 in index 123 -adding to 673: Location of original node 549 in index 124 -adding to 674: Location of original node 549 in index 125 -adding to 675: Location of original node 549 in index 126 -adding to 676: Location of original node 549 in index 127 -adding to 677: Location of original node 549 in index 128 -adding to 678: Location of original node 549 in index 129 -adding to 679: Location of original node 549 in index 130 -adding to 680: Location of original node 549 in index 131 -adding to 681: Location of original node 549 in index 132 -adding to 682: Location of original node 549 in index 133 -adding to 683: Location of original node 549 in index 134 -adding to 684: Location of original node 549 in index 135 -adding to 685: Location of original node 549 in index 136 -adding to 686: Location of original node 549 in index 137 -adding to 687: Location of original node 549 in index 138 -adding to 688: Location of original node 549 in index 139 -adding to 689: Location of original node 549 in index 140 -adding to 690: Location of original node 549 in index 141 -adding to 691: Location of original node 549 in index 142 -adding to 692: Location of original node 549 in index 143 -adding to 693: Location of original node 549 in index 144 -adding to 694: Location of original node 549 in index 145 -adding to 695: Location of original node 549 in index 146 -adding to 696: Location of original node 549 in index 147 -adding to 697: Location of original node 549 in index 148 -adding to 698: Location of original node 549 in index 149 -adding to 699: Location of original node 549 in index 150 -adding to 700: Location of original node 549 in index 151 -adding to 701: Location of original node 549 in index 152 -adding to 702: Location of original node 549 in index 153 -adding to 703: Location of original node 549 in index 154 -adding to 704: Location of original node 549 in index 155 -adding to 705: Location of original node 549 in index 156 -adding to 706: Location of original node 549 in index 157 -adding to 707: Location of original node 549 in index 158 -adding to 708: Location of original node 549 in index 159 -adding to 709: Location of original node 549 in index 160 -adding to 710: Location of original node 549 in index 161 -adding to 711: Location of original node 549 in index 162 -adding to 712: Location of original node 549 in index 163 -adding to 713: Location of original node 549 in index 164 -adding to 714: Location of original node 549 in index 165 -adding to 715: Location of original node 549 in index 166 -adding to 716: Location of original node 549 in index 167 -adding to 717: Location of original node 717 in index 0 -adding to 718: Location of original node 717 in index 1 -adding to 719: Location of original node 717 in index 2 -adding to 720: Location of original node 717 in index 3 -adding to 721: Location of original node 717 in index 4 -adding to 722: Location of original node 717 in index 5 -adding to 723: Location of original node 717 in index 6 -adding to 724: Location of original node 717 in index 7 -adding to 725: Location of original node 717 in index 8 -adding to 726: Location of original node 717 in index 9 -adding to 727: Location of original node 717 in index 10 -adding to 728: Location of original node 717 in index 11 -adding to 729: Location of original node 717 in index 12 -adding to 730: Location of original node 717 in index 13 -adding to 731: Location of original node 717 in index 14 -adding to 732: Location of original node 717 in index 15 -adding to 733: Location of original node 717 in index 16 -adding to 734: Location of original node 717 in index 17 -adding to 735: Location of original node 717 in index 18 -adding to 736: Location of original node 717 in index 19 -adding to 737: Location of original node 717 in index 20 -adding to 738: Location of original node 717 in index 21 -adding to 739: Location of original node 717 in index 22 -adding to 740: Location of original node 717 in index 23 -adding to 741: Location of original node 717 in index 24 -adding to 742: Location of original node 717 in index 25 -adding to 743: Location of original node 717 in index 26 -adding to 744: Location of original node 717 in index 27 -adding to 745: Location of original node 717 in index 28 -adding to 746: Location of original node 717 in index 29 -adding to 747: Location of original node 717 in index 30 -adding to 748: Location of original node 717 in index 31 -adding to 749: Location of original node 717 in index 32 -adding to 750: Location of original node 717 in index 33 -adding to 751: Location of original node 717 in index 34 -adding to 752: Location of original node 717 in index 35 -adding to 753: Location of original node 717 in index 36 -adding to 754: Location of original node 717 in index 37 -adding to 755: Location of original node 717 in index 38 -adding to 756: Location of original node 717 in index 39 -adding to 757: Location of original node 717 in index 40 -adding to 758: Location of original node 717 in index 41 -adding to 786: Location of original node 786 in index 0 -adding to 787: Location of original node 786 in index 1 -adding to 788: Location of original node 786 in index 2 -adding to 789: Location of original node 786 in index 3 -adding to 790: Location of original node 786 in index 4 -adding to 791: Location of original node 786 in index 5 -adding to 792: Location of original node 786 in index 6 -adding to 793: Location of original node 786 in index 7 -adding to 794: Location of original node 786 in index 8 -adding to 795: Location of original node 786 in index 9 -adding to 796: Location of original node 786 in index 10 -adding to 797: Location of original node 786 in index 11 -adding to 798: Location of original node 786 in index 12 -adding to 799: Location of original node 786 in index 13 -adding to 800: Location of original node 786 in index 14 -adding to 801: Location of original node 786 in index 15 -adding to 802: Location of original node 786 in index 16 -adding to 803: Location of original node 786 in index 17 -adding to 804: Location of original node 786 in index 18 -adding to 805: Location of original node 786 in index 19 -adding to 806: Location of original node 786 in index 20 -adding to 807: Location of original node 786 in index 21 -adding to 808: Location of original node 786 in index 22 -adding to 809: Location of original node 786 in index 23 -adding to 810: Location of original node 786 in index 24 -adding to 811: Location of original node 786 in index 25 -adding to 812: Location of original node 786 in index 26 -adding to 945: Location of original node 945 in index 0 -adding to 946: Location of original node 945 in index 1 -adding to 947: Location of original node 945 in index 2 -adding to 948: Location of original node 945 in index 3 -adding to 949: Location of original node 945 in index 4 -adding to 950: Location of original node 945 in index 5 -adding to 951: Location of original node 945 in index 6 -adding to 952: Location of original node 945 in index 7 -adding to 953: Location of original node 945 in index 8 -adding to 954: Location of original node 945 in index 9 -adding to 955: Location of original node 945 in index 10 -adding to 956: Location of original node 945 in index 11 -adding to 957: Location of original node 945 in index 12 -adding to 958: Location of original node 945 in index 13 -adding to 959: Location of original node 945 in index 14 -adding to 960: Location of original node 945 in index 15 -adding to 961: Location of original node 945 in index 16 -adding to 962: Location of original node 945 in index 17 -adding to 963: Location of original node 945 in index 18 -adding to 964: Location of original node 945 in index 19 -adding to 965: Location of original node 945 in index 20 -adding to 966: Location of original node 945 in index 21 -adding to 967: Location of original node 945 in index 22 -adding to 968: Location of original node 945 in index 23 -adding to 969: Location of original node 945 in index 24 -adding to 970: Location of original node 945 in index 25 -adding to 971: Location of original node 945 in index 26 -adding to 972: Location of original node 945 in index 27 -adding to 973: Location of original node 945 in index 28 -adding to 974: Location of original node 945 in index 29 -adding to 975: Location of original node 945 in index 30 -adding to 976: Location of original node 945 in index 31 -adding to 977: Location of original node 945 in index 32 -adding to 978: Location of original node 945 in index 33 -adding to 979: Location of original node 945 in index 34 -adding to 980: Location of original node 945 in index 35 -adding to 526: Location of original node 981 in index 0 -adding to 527: Location of original node 981 in index 1 -adding to 528: Location of original node 981 in index 2 -adding to 529: Location of original node 981 in index 3 -adding to 530: Location of original node 981 in index 4 -adding to 531: Location of original node 981 in index 5 -adding to 532: Location of original node 981 in index 6 -adding to 533: Location of original node 981 in index 7 -adding to 534: Location of original node 981 in index 8 -adding to 535: Location of original node 981 in index 9 -adding to 536: Location of original node 981 in index 10 -adding to 537: Location of original node 981 in index 11 -adding to 538: Location of original node 981 in index 12 -adding to 539: Location of original node 981 in index 13 -adding to 540: Location of original node 981 in index 14 -adding to 541: Location of original node 981 in index 15 -adding to 542: Location of original node 981 in index 16 -adding to 543: Location of original node 981 in index 17 -adding to 544: Location of original node 981 in index 18 -adding to 545: Location of original node 981 in index 19 -adding to 546: Location of original node 981 in index 20 -adding to 547: Location of original node 981 in index 21 -adding to 548: Location of original node 981 in index 22 -adding to 417: Location of original node 982 in index 0 -adding to 418: Location of original node 982 in index 1 -adding to 419: Location of original node 982 in index 2 -adding to 420: Location of original node 982 in index 3 -adding to 421: Location of original node 982 in index 4 -adding to 422: Location of original node 982 in index 5 -adding to 423: Location of original node 982 in index 6 -adding to 424: Location of original node 982 in index 7 -adding to 425: Location of original node 982 in index 8 -adding to 426: Location of original node 982 in index 9 -adding to 427: Location of original node 982 in index 10 -adding to 428: Location of original node 982 in index 11 -adding to 429: Location of original node 982 in index 12 -adding to 430: Location of original node 982 in index 13 -adding to 431: Location of original node 982 in index 14 -adding to 432: Location of original node 982 in index 15 -adding to 433: Location of original node 982 in index 16 -adding to 434: Location of original node 982 in index 17 -adding to 435: Location of original node 982 in index 18 -adding to 436: Location of original node 982 in index 19 -adding to 437: Location of original node 982 in index 20 -adding to 438: Location of original node 982 in index 21 -adding to 439: Location of original node 982 in index 22 - -SECTION -================= -Node descriptions before threading. -=================== - -NODE_DESCR: GGCCACACGA...CTTCCTCAAG:W2(V380_D0) Preds: [] Succ: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) ] -NODE_DESCR: CTTTCCAAGTA:W8(V440_D2) Preds: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) ] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) ] -NODE_DESCR: GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) Preds: [AGAATACAAA...TTTCCAAGTA:W1(V945_D0) CTTTCCAAGTA:W8(V440_D2) ] Succ: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) ] -NODE_DESCR: AGTCCACCAC...GGGAGCCACC:W6(V549_D3) Preds: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) ] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) ] -NODE_DESCR: AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) Preds: [GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) AGTCCACCAC...GGGAGCCACC:W6(V549_D3) ] Succ: [] -NODE_DESCR: GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) Preds: [] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) ] -NODE_DESCR: AGAATACAAA...TTTCCAAGTA:W1(V945_D0) Preds: [] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) ] -NODE_DESCR: GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3) ] -NODE_DESCR: CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V380_D0) ] Succ: [CTTTCCAAGTA:W8(V440_D2) ] - -SECTION -==================== -Threading reads through the graph -========================= - - mapped read [1]Read: >61DFRAAXX100204:1:112:16960:13532/1 0 654 51 705 AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA - -Read: 61DFRAAXX100204:1:112:16960:13532 has start: 0, end: 75 and sequence: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA -after extracting substring: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 105 - - -Threading read: 61DFRAAXX100204:1:112:16960:13532, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:1:112:16960:13532 sequence is: -AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA -updatePathRecursively(readName=61DFRAAXX100204:1:112:16960:13532, locInSeq: 0 / 75, locInNode: 105 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:1:112:16960:13532) -AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 105 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 181 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:1:112:16960:13532 with length: 76 and base [76] ends at position [181] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for 61DFRAAXX100204:1:112:16960:13532 is [549] with total mm: 0 -Read 61DFRAAXX100204:1:112:16960:13532 seq AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:181,readEnd:76] , trimmed to: [549] -Threaded Read as: 61DFRAAXX100204:1:112:16960:13532 : [549] -ReadPath@Init: 61DFRAAXX100204:1:112:16960:13532 : [549] - mapped read [2]Read: >61DFRAAXX100204:1:113:7690:4285/2 0 538 51 589 GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG - -Read: 61DFRAAXX100204:1:113:7690:4285 has start: 0, end: 75 and sequence: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG -after extracting substring: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG -findPathInGraph: V:981, with seq: GGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA -trying to start the mapping to node 981 at position: 12 - - -Threading read: 61DFRAAXX100204:1:113:7690:4285, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:1:113:7690:4285 sequence is: -GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG -updatePathRecursively(readName=61DFRAAXX100204:1:113:7690:4285, locInSeq: 0 / 75, locInNode: 12 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:1:113:7690:4285) -GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAA 0 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA 12 -shortcircuiting the zipper test, too many MM or execeeding local seq divergence - *Trying again using full DP alignment: --running Needleman-Wunsch alignment of vertex to read -Read 1 -GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCG 49 - |||||||||||||||||||||||||||||||||| -Vertex 1 GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA--------------- 35 - - -vertex end gaps: 15 -read end gaps: 0 -mismatches encountered: 1 -alignment divergence up to seq pos 34 = mm: 1, div:0.029411765 -local vertex alignment divergence = 1 / 47 = 0.021276595 -Reached end of node sequence. Read61DFRAAXX100204:1:113:7690:4285 base [34] ends at position [47] within node: 981 totaling 1 mismatches. --reached end of vertex: 981, exploring next vertices for continued path extension: [549] -Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] -Exploring extension from node: 981 to node: 549 -updatePathRecursively(readName=61DFRAAXX100204:1:113:7690:4285, locInSeq: 34 / 75, locInNode: 23 / 190, totalNumMm: 1 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:1:113:7690:4285) -AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 34 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 -local vertex alignment divergence = 0 / 65 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:1:113:7690:4285 with length: 76 and base [76] ends at position [65] within node: 549 totaling 0 mismatches. -61DFRAAXX100204:1:113:7690:4285 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 -Done with exploring paths from vertex: 981 -Paths and scores found are: - explored path: [549] w/ mm: 0 - AND best selected was: [549] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:1:113:7690:4285 is [981, 549] with total mm: 1 -Read 61DFRAAXX100204:1:113:7690:4285 seq GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [981, 549] positions: [981,nodeEnd:47,readEnd:34] [549,nodeEnd:65,readEnd:76] , trimmed to: [981, 549] -Threaded Read as: 61DFRAAXX100204:1:113:7690:4285 : [981, 549] -ReadPath@Init: 61DFRAAXX100204:1:113:7690:4285 : [981, 549] - mapped read [3]Read: >61DFRAAXX100204:1:115:8211:5116/2 0 473 51 524 AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG - -Read: 61DFRAAXX100204:1:115:8211:5116 has start: 0, end: 75 and sequence: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG -after extracting substring: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG -findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT -trying to start the mapping to node 451 at position: 22 - - -Threading read: 61DFRAAXX100204:1:115:8211:5116, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:1:115:8211:5116 sequence is: -AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG -updatePathRecursively(readName=61DFRAAXX100204:1:115:8211:5116, locInSeq: 0 / 75, locInNode: 22 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (61DFRAAXX100204:1:115:8211:5116) -AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 22 -zipper alignment mm: 0 -alignment divergence up to seq pos 75 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 97 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:1:115:8211:5116 base [75] ends at position [97] within node: 451 totaling 0 mismatches. --reached end of vertex: 451, exploring next vertices for continued path extension: [981] -Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] -Exploring extension from node: 451 to node: 981 -updatePathRecursively(readName=61DFRAAXX100204:1:115:8211:5116, locInSeq: 75 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:1:115:8211:5116) -G 75 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -G 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 24 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:1:115:8211:5116 with length: 76 and base [76] ends at position [24] within node: 981 totaling 0 mismatches. -61DFRAAXX100204:1:115:8211:5116 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 -Done with exploring paths from vertex: 451 -Paths and scores found are: - explored path: [981] w/ mm: 0 - AND best selected was: [981] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:1:115:8211:5116 is [451, 981] with total mm: 0 -Read 61DFRAAXX100204:1:115:8211:5116 seq AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:75] [981,nodeEnd:24,readEnd:76] , trimmed to: [451, 981] -Threaded Read as: 61DFRAAXX100204:1:115:8211:5116 : [451, 981] -ReadPath@Init: 61DFRAAXX100204:1:115:8211:5116 : [451, 981] - mapped read [4]Read: >61DFRAAXX100204:1:20:5538:6890/2 0 567 51 618 AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT - -Read: 61DFRAAXX100204:1:20:5538:6890 has start: 0, end: 75 and sequence: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT -after extracting substring: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 18 - - -Threading read: 61DFRAAXX100204:1:20:5538:6890, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:1:20:5538:6890 sequence is: -AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT -updatePathRecursively(readName=61DFRAAXX100204:1:20:5538:6890, locInSeq: 0 / 75, locInNode: 18 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:1:20:5538:6890) -AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 18 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 94 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:1:20:5538:6890 with length: 76 and base [76] ends at position [94] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for 61DFRAAXX100204:1:20:5538:6890 is [549] with total mm: 0 -Read 61DFRAAXX100204:1:20:5538:6890 seq AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:94,readEnd:76] , trimmed to: [549] -Threaded Read as: 61DFRAAXX100204:1:20:5538:6890 : [549] -ReadPath@Init: 61DFRAAXX100204:1:20:5538:6890 : [549] - mapped read [5]Read: >61DFRAAXX100204:1:39:8793:18196/1 0 380 51 431 GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA - -Read: 61DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA -after extracting substring: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA -findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG -trying to start the mapping to node 380 at position: 0 - - -Threading read: 61DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:1:39:8793:18196 sequence is: -GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA -updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 - -trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) --ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) -GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 -To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: -GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 -zipper alignment mm: 0 -alignment divergence up to seq pos 59 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 59 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:1:39:8793:18196 base [59] ends at position [59] within node: 380 totaling 0 mismatches. --reached end of vertex: 380, exploring next vertices for continued path extension: [982] -Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] -Exploring extension from node: 380 to node: 982 -updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 59 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) -CCTCATCAGCAAGAAGA 59 -To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: -CCTCATCAGCAAGAAGA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 40 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [40] within node: 982 totaling 0 mismatches. -61DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 380 to : 982 = [982], with total mm: 0 -Done with exploring paths from vertex: 380 -Paths and scores found are: - explored path: [982] w/ mm: 0 - AND best selected was: [982] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:1:39:8793:18196 is [380, 982] with total mm: 0 -Read 61DFRAAXX100204:1:39:8793:18196 seq GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982] positions: [380,nodeEnd:59,readEnd:59] [982,nodeEnd:40,readEnd:76] , trimmed to: [380, 982] -Threaded Read as: 61DFRAAXX100204:1:39:8793:18196 : [380, 982] -ReadPath@Init: 61DFRAAXX100204:1:39:8793:18196 : [380, 982] - mapped read [6]Read: >61DFRAAXX100204:1:39:8793:18196/2 0 502 51 553 GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA - -Read: 61DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA -after extracting substring: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA -findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT -trying to start the mapping to node 451 at position: 51 - - -Threading read: 61DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:1:39:8793:18196 sequence is: -GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA -updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 51 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) -GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 51 -zipper alignment mm: 0 -alignment divergence up to seq pos 46 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 97 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:1:39:8793:18196 base [46] ends at position [97] within node: 451 totaling 0 mismatches. --reached end of vertex: 451, exploring next vertices for continued path extension: [981] -Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] -Exploring extension from node: 451 to node: 981 -updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 46 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) -CAGCACTCTGAACCCTGTGAGGCA 46 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -GAGCACTCTGAACCCTGTGAGGCA 23 -zipper alignment mm: 1 -alignment divergence up to seq pos 70 = mm: 1, div:0.014285714 -local vertex alignment divergence = 1 / 47 = 0.021276595 -Reached end of node sequence. Read61DFRAAXX100204:1:39:8793:18196 base [70] ends at position [47] within node: 981 totaling 1 mismatches. --reached end of vertex: 981, exploring next vertices for continued path extension: [549] -Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] -Exploring extension from node: 981 to node: 549 -updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 70 / 75, locInNode: 23 / 190, totalNumMm: 1 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) -AGTCCA 70 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGTCCA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 -local vertex alignment divergence = 0 / 29 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [29] within node: 549 totaling 0 mismatches. -61DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 -Done with exploring paths from vertex: 981 -Paths and scores found are: - explored path: [549] w/ mm: 0 - AND best selected was: [549] w/ mm: 0 -61DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 1 -Done with exploring paths from vertex: 451 -Paths and scores found are: - explored path: [981, 549] w/ mm: 1 - AND best selected was: [981, 549] w/ mm: 1 -FINAL BEST PATH for 61DFRAAXX100204:1:39:8793:18196 is [451, 981, 549] with total mm: 1 -Read 61DFRAAXX100204:1:39:8793:18196 seq GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:46] [981,nodeEnd:47,readEnd:70] [549,nodeEnd:29,readEnd:76] , trimmed to: [451, 981, 549] -Threaded Read as: 61DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] -ReadPath@Init: 61DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] - mapped read [7]Read: >61DFRAAXX100204:1:67:9991:2232/1 0 401 51 452 GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG - -Read: 61DFRAAXX100204:1:67:9991:2232 has start: 0, end: 75 and sequence: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG -after extracting substring: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG -findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG -trying to start the mapping to node 380 at position: 21 - - -Threading read: 61DFRAAXX100204:1:67:9991:2232, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:1:67:9991:2232 sequence is: -GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG -updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 0 / 75, locInNode: 21 / 58, totalNumMm: 0 - -trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) --ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) -GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 -To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: -GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 21 -zipper alignment mm: 0 -alignment divergence up to seq pos 38 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 59 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:1:67:9991:2232 base [38] ends at position [59] within node: 380 totaling 0 mismatches. --reached end of vertex: 380, exploring next vertices for continued path extension: [982] -Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] -Exploring extension from node: 380 to node: 982 -updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 38 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) -CCTCATCAGCAAGAAGAAATCTTT 38 -To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: -CCTCATCAGCAAGAAGAAATCTTT 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 62 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 47 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:1:67:9991:2232 base [62] ends at position [47] within node: 982 totaling 0 mismatches. --reached end of vertex: 982, exploring next vertices for continued path extension: [440] -Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] -Exploring extension from node: 982 to node: 440 -updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 62 / 75, locInNode: 23 / 33, totalNumMm: 0 - -trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) --ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) -CTTTCCAAGTA 62 -To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: -CTTTCCAAGTA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 73 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 34 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:1:67:9991:2232 base [73] ends at position [34] within node: 440 totaling 0 mismatches. --reached end of vertex: 440, exploring next vertices for continued path extension: [451] -Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] -Exploring extension from node: 440 to node: 451 -updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 73 / 75, locInNode: 23 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) -GTG 73 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GTG 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 26 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:1:67:9991:2232 with length: 76 and base [76] ends at position [26] within node: 451 totaling 0 mismatches. -61DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 -Done with exploring paths from vertex: 440 -Paths and scores found are: - explored path: [451] w/ mm: 0 - AND best selected was: [451] w/ mm: 0 -61DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 -Done with exploring paths from vertex: 982 -Paths and scores found are: - explored path: [440, 451] w/ mm: 0 - AND best selected was: [440, 451] w/ mm: 0 -61DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 -Done with exploring paths from vertex: 380 -Paths and scores found are: - explored path: [982, 440, 451] w/ mm: 0 - AND best selected was: [982, 440, 451] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:1:67:9991:2232 is [380, 982, 440, 451] with total mm: 0 -Read 61DFRAAXX100204:1:67:9991:2232 seq GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:38] [982,nodeEnd:47,readEnd:62] [440,nodeEnd:34,readEnd:73] [451,nodeEnd:26,readEnd:76] , trimmed to: [380, 982, 440, 451] -Threaded Read as: 61DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] -ReadPath@Init: 61DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] - mapped read [8]Read: >61DFRAAXX100204:1:70:1041:1268/1 18 680 25 687 GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG - -Read: 61DFRAAXX100204:1:70:1041:1268 has start: 18, end: 49 and sequence: GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG -after extracting substring: TGACAGACTCTCTAAGGGACATATGGGAGCTA -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 131 - - -Threading read: 61DFRAAXX100204:1:70:1041:1268, length: 32, allowing for 2 max mismatches. -Read: 61DFRAAXX100204:1:70:1041:1268 sequence is: -TGACAGACTCTCTAAGGGACATATGGGAGCTA -updatePathRecursively(readName=61DFRAAXX100204:1:70:1041:1268, locInSeq: 0 / 31, locInNode: 131 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:1:70:1041:1268) -TGACAGACTCTCTAAGGGACATATGGGAGCTA 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -TGACAGACTCTCTAAGGGACATATGGGAGCTA 131 -zipper alignment mm: 0 -alignment divergence up to seq pos 32 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 163 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:1:70:1041:1268 with length: 32 and base [32] ends at position [163] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for 61DFRAAXX100204:1:70:1041:1268 is [549] with total mm: 0 -Read 61DFRAAXX100204:1:70:1041:1268 seq TGACAGACTCTCTAAGGGACATATGGGAGCTA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:163,readEnd:32] , trimmed to: [549] -Threaded Read as: 61DFRAAXX100204:1:70:1041:1268 : [549] -ReadPath@Init: 61DFRAAXX100204:1:70:1041:1268 : [549] - mapped read [9]Read: >61DFRAAXX100204:1:85:13720:15251/1 0 639 51 690 TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT - -Read: 61DFRAAXX100204:1:85:13720:15251 has start: 0, end: 75 and sequence: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT -after extracting substring: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 90 - - -Threading read: 61DFRAAXX100204:1:85:13720:15251, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:1:85:13720:15251 sequence is: -TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT -updatePathRecursively(readName=61DFRAAXX100204:1:85:13720:15251, locInSeq: 0 / 75, locInNode: 90 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:1:85:13720:15251) -TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 90 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 166 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:1:85:13720:15251 with length: 76 and base [76] ends at position [166] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for 61DFRAAXX100204:1:85:13720:15251 is [549] with total mm: 0 -Read 61DFRAAXX100204:1:85:13720:15251 seq TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:166,readEnd:76] , trimmed to: [549] -Threaded Read as: 61DFRAAXX100204:1:85:13720:15251 : [549] -ReadPath@Init: 61DFRAAXX100204:1:85:13720:15251 : [549] - mapped read [10]Read: >61DFRAAXX100204:2:13:7749:17373/2 0 413 51 464 ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG - -Read: 61DFRAAXX100204:2:13:7749:17373 has start: 0, end: 75 and sequence: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG -after extracting substring: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG -findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG -trying to start the mapping to node 380 at position: 33 - - -Threading read: 61DFRAAXX100204:2:13:7749:17373, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:13:7749:17373 sequence is: -ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG -updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 0 / 75, locInNode: 33 / 58, totalNumMm: 0 - -trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) --ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) -ACTGGCTACAAACAGACTTCCTCAAG 0 -To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: -ACTGGCTACAAACAGACTTCCTCAAG 33 -zipper alignment mm: 0 -alignment divergence up to seq pos 26 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 59 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:13:7749:17373 base [26] ends at position [59] within node: 380 totaling 0 mismatches. --reached end of vertex: 380, exploring next vertices for continued path extension: [982] -Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] -Exploring extension from node: 380 to node: 982 -updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 26 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) -CCTCATCAGCAAGAAGAAATCTTT 26 -To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: -CCTCATCAGCAAGAAGAAATCTTT 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 50 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 47 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:13:7749:17373 base [50] ends at position [47] within node: 982 totaling 0 mismatches. --reached end of vertex: 982, exploring next vertices for continued path extension: [440] -Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] -Exploring extension from node: 982 to node: 440 -updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 50 / 75, locInNode: 23 / 33, totalNumMm: 0 - -trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) --ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) -CTTTCCAAGTA 50 -To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: -CTTTCCAAGTA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 61 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 34 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:13:7749:17373 base [61] ends at position [34] within node: 440 totaling 0 mismatches. --reached end of vertex: 440, exploring next vertices for continued path extension: [451] -Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] -Exploring extension from node: 440 to node: 451 -updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 61 / 75, locInNode: 23 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) -GTGTCTTAACTCAGG 61 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GTGTCTTAACTCAGG 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 38 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:13:7749:17373 with length: 76 and base [76] ends at position [38] within node: 451 totaling 0 mismatches. -61DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 -Done with exploring paths from vertex: 440 -Paths and scores found are: - explored path: [451] w/ mm: 0 - AND best selected was: [451] w/ mm: 0 -61DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 -Done with exploring paths from vertex: 982 -Paths and scores found are: - explored path: [440, 451] w/ mm: 0 - AND best selected was: [440, 451] w/ mm: 0 -61DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 -Done with exploring paths from vertex: 380 -Paths and scores found are: - explored path: [982, 440, 451] w/ mm: 0 - AND best selected was: [982, 440, 451] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:2:13:7749:17373 is [380, 982, 440, 451] with total mm: 0 -Read 61DFRAAXX100204:2:13:7749:17373 seq ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:26] [982,nodeEnd:47,readEnd:50] [440,nodeEnd:34,readEnd:61] [451,nodeEnd:38,readEnd:76] , trimmed to: [380, 982, 440, 451] -Threaded Read as: 61DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] -ReadPath@Init: 61DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] - mapped read [11]Read: >61DFRAAXX100204:2:18:10392:2962/1 0 411 51 462 CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA - -Read: 61DFRAAXX100204:2:18:10392:2962 has start: 0, end: 75 and sequence: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA -after extracting substring: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA -findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG -trying to start the mapping to node 380 at position: 31 - - -Threading read: 61DFRAAXX100204:2:18:10392:2962, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:18:10392:2962 sequence is: -CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA -updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 0 / 75, locInNode: 31 / 58, totalNumMm: 0 - -trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) --ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) -CTACTGGCTACAAACAGACTTCCTCAAG 0 -To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: -CTACTGGCTACAAACAGACTTCCTCAAG 31 -zipper alignment mm: 0 -alignment divergence up to seq pos 28 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 59 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:18:10392:2962 base [28] ends at position [59] within node: 380 totaling 0 mismatches. --reached end of vertex: 380, exploring next vertices for continued path extension: [982] -Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] -Exploring extension from node: 380 to node: 982 -updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 28 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) -GCTCATCAGCAAGAAGAAATCTTT 28 -To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: -CCTCATCAGCAAGAAGAAATCTTT 23 -zipper alignment mm: 1 -alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 -local vertex alignment divergence = 1 / 47 = 0.021276595 -Reached end of node sequence. Read61DFRAAXX100204:2:18:10392:2962 base [52] ends at position [47] within node: 982 totaling 1 mismatches. --reached end of vertex: 982, exploring next vertices for continued path extension: [440] -Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] -Exploring extension from node: 982 to node: 440 -updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 52 / 75, locInNode: 23 / 33, totalNumMm: 1 - -trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) --ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) -CTTTCCAAGTA 52 -To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: -CTTTCCAAGTA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 63 = mm: 1, div:0.015873017 -local vertex alignment divergence = 0 / 34 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:18:10392:2962 base [63] ends at position [34] within node: 440 totaling 0 mismatches. --reached end of vertex: 440, exploring next vertices for continued path extension: [451] -Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] -Exploring extension from node: 440 to node: 451 -updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 63 / 75, locInNode: 23 / 96, totalNumMm: 1 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) -GTGTCTTAACTCA 63 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GTGTCTTAACTCA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 -local vertex alignment divergence = 0 / 36 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:18:10392:2962 with length: 76 and base [76] ends at position [36] within node: 451 totaling 0 mismatches. -61DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 -Done with exploring paths from vertex: 440 -Paths and scores found are: - explored path: [451] w/ mm: 0 - AND best selected was: [451] w/ mm: 0 -61DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 -Done with exploring paths from vertex: 982 -Paths and scores found are: - explored path: [440, 451] w/ mm: 0 - AND best selected was: [440, 451] w/ mm: 0 -61DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 1 -Done with exploring paths from vertex: 380 -Paths and scores found are: - explored path: [982, 440, 451] w/ mm: 1 - AND best selected was: [982, 440, 451] w/ mm: 1 -FINAL BEST PATH for 61DFRAAXX100204:2:18:10392:2962 is [380, 982, 440, 451] with total mm: 1 -Read 61DFRAAXX100204:2:18:10392:2962 seq CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:28] [982,nodeEnd:47,readEnd:52] [440,nodeEnd:34,readEnd:63] [451,nodeEnd:36,readEnd:76] , trimmed to: [380, 982, 440, 451] -Threaded Read as: 61DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] -ReadPath@Init: 61DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] - mapped read [12]Read: >61DFRAAXX100204:2:27:5714:7307/1 0 657 51 708 GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG - -Read: 61DFRAAXX100204:2:27:5714:7307 has start: 0, end: 75 and sequence: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG -after extracting substring: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 108 - - -Threading read: 61DFRAAXX100204:2:27:5714:7307, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:27:5714:7307 sequence is: -GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG -updatePathRecursively(readName=61DFRAAXX100204:2:27:5714:7307, locInSeq: 0 / 75, locInNode: 108 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:2:27:5714:7307) -GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 108 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 184 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:27:5714:7307 with length: 76 and base [76] ends at position [184] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for 61DFRAAXX100204:2:27:5714:7307 is [549] with total mm: 0 -Read 61DFRAAXX100204:2:27:5714:7307 seq GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:184,readEnd:76] , trimmed to: [549] -Threaded Read as: 61DFRAAXX100204:2:27:5714:7307 : [549] -ReadPath@Init: 61DFRAAXX100204:2:27:5714:7307 : [549] - mapped read [13]Read: >61DFRAAXX100204:2:33:12784:13782/1 0 606 51 657 TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG - -Read: 61DFRAAXX100204:2:33:12784:13782 has start: 0, end: 75 and sequence: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG -after extracting substring: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 57 - - -Threading read: 61DFRAAXX100204:2:33:12784:13782, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:33:12784:13782 sequence is: -TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG -updatePathRecursively(readName=61DFRAAXX100204:2:33:12784:13782, locInSeq: 0 / 75, locInNode: 57 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:2:33:12784:13782) -TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 57 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 133 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:33:12784:13782 with length: 76 and base [76] ends at position [133] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for 61DFRAAXX100204:2:33:12784:13782 is [549] with total mm: 0 -Read 61DFRAAXX100204:2:33:12784:13782 seq TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:133,readEnd:76] , trimmed to: [549] -Threaded Read as: 61DFRAAXX100204:2:33:12784:13782 : [549] -ReadPath@Init: 61DFRAAXX100204:2:33:12784:13782 : [549] - mapped read [14]Read: >61DFRAAXX100204:2:34:11574:10433/2 0 422 51 473 AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG - -Read: 61DFRAAXX100204:2:34:11574:10433 has start: 0, end: 75 and sequence: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG -after extracting substring: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG -findPathInGraph: V:982, with seq: GGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT -trying to start the mapping to node 982 at position: 5 - - -Threading read: 61DFRAAXX100204:2:34:11574:10433, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:34:11574:10433 sequence is: -AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG -updatePathRecursively(readName=61DFRAAXX100204:2:34:11574:10433, locInSeq: 0 / 75, locInNode: 5 / 46, totalNumMm: 0 - -trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:2:34:11574:10433) -AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTC 0 -To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: -CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT 5 -shortcircuiting the zipper test, too many MM or execeeding local seq divergence - *Trying again using full DP alignment: --running Needleman-Wunsch alignment of vertex to read -Read 1 -AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAA 49 - ||||||||||||||||||||||||||||||||||||||||| -Vertex 1 CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT-------- 42 - - -vertex end gaps: 8 -read end gaps: 0 -mismatches encountered: 1 -alignment divergence up to seq pos 41 = mm: 1, div:0.024390243 -local vertex alignment divergence = 1 / 47 = 0.021276595 -Reached end of node sequence. Read61DFRAAXX100204:2:34:11574:10433 base [41] ends at position [47] within node: 982 totaling 1 mismatches. --reached end of vertex: 982, exploring next vertices for continued path extension: [440] -Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] -Exploring extension from node: 982 to node: 440 -updatePathRecursively(readName=61DFRAAXX100204:2:34:11574:10433, locInSeq: 41 / 75, locInNode: 23 / 33, totalNumMm: 1 - -trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) --ALIGNING READ SEQ (61DFRAAXX100204:2:34:11574:10433) -CTTTCCAAGTA 41 -To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: -CTTTCCAAGTA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 -local vertex alignment divergence = 0 / 34 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:34:11574:10433 base [52] ends at position [34] within node: 440 totaling 0 mismatches. --reached end of vertex: 440, exploring next vertices for continued path extension: [451] -Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] -Exploring extension from node: 440 to node: 451 -updatePathRecursively(readName=61DFRAAXX100204:2:34:11574:10433, locInSeq: 52 / 75, locInNode: 23 / 96, totalNumMm: 1 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (61DFRAAXX100204:2:34:11574:10433) -GTGTCTTAACTCAGGAGATCATGG 52 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GTGTCTTAACTCAGGAGATCATGG 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 -local vertex alignment divergence = 0 / 47 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:34:11574:10433 with length: 76 and base [76] ends at position [47] within node: 451 totaling 0 mismatches. -61DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 -Done with exploring paths from vertex: 440 -Paths and scores found are: - explored path: [451] w/ mm: 0 - AND best selected was: [451] w/ mm: 0 -61DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 -Done with exploring paths from vertex: 982 -Paths and scores found are: - explored path: [440, 451] w/ mm: 0 - AND best selected was: [440, 451] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:2:34:11574:10433 is [982, 440, 451] with total mm: 1 -Read 61DFRAAXX100204:2:34:11574:10433 seq AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [982, 440, 451] positions: [982,nodeEnd:47,readEnd:41] [440,nodeEnd:34,readEnd:52] [451,nodeEnd:47,readEnd:76] , trimmed to: [982, 440, 451] -Threaded Read as: 61DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] -ReadPath@Init: 61DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] - mapped read [15]Read: >61DFRAAXX100204:2:43:2649:2845/2 0 945 51 466 AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG - -Read: 61DFRAAXX100204:2:43:2649:2845 has start: 0, end: 75 and sequence: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG -after extracting substring: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG -findPathInGraph: V:945, with seq: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA -trying to start the mapping to node 945 at position: 0 - - -Threading read: 61DFRAAXX100204:2:43:2649:2845, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:43:2649:2845 sequence is: -AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG -updatePathRecursively(readName=61DFRAAXX100204:2:43:2649:2845, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 - -trying to continue the mapping to node AGAATACAAA...TTTCCAAGTA:W1(V945_D0) --ALIGNING READ SEQ (61DFRAAXX100204:2:43:2649:2845) -AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 -To VERTEX (AGAATACAAA...TTTCCAAGTA:W1(V945_D0)) SEQ: -AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 -zipper alignment mm: 0 -alignment divergence up to seq pos 59 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 59 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:43:2649:2845 base [59] ends at position [59] within node: 945 totaling 0 mismatches. --reached end of vertex: 945, exploring next vertices for continued path extension: [451] -Pursuing extension from : AGAATACAAA...TTTCCAAGTA:W1(V945_D0) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] -Exploring extension from node: 945 to node: 451 -updatePathRecursively(readName=61DFRAAXX100204:2:43:2649:2845, locInSeq: 59 / 75, locInNode: 23 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (61DFRAAXX100204:2:43:2649:2845) -GTGTCTTAACTCAGGAG 59 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GTGTCTTAACTCAGGAG 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 40 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:43:2649:2845 with length: 76 and base [76] ends at position [40] within node: 451 totaling 0 mismatches. -61DFRAAXX100204:2:43:2649:2845 best path so far from vertex: 945 to : 451 = [451], with total mm: 0 -Done with exploring paths from vertex: 945 -Paths and scores found are: - explored path: [451] w/ mm: 0 - AND best selected was: [451] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:2:43:2649:2845 is [945, 451] with total mm: 0 -Read 61DFRAAXX100204:2:43:2649:2845 seq AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [945, 451] positions: [945,nodeEnd:59,readEnd:59] [451,nodeEnd:40,readEnd:76] , trimmed to: [945, 451] -Threaded Read as: 61DFRAAXX100204:2:43:2649:2845 : [945, 451] -ReadPath@Init: 61DFRAAXX100204:2:43:2649:2845 : [945, 451] - mapped read [16]Read: >61DFRAAXX100204:2:47:12270:6103/1 0 631 51 682 CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG - -Read: 61DFRAAXX100204:2:47:12270:6103 has start: 0, end: 75 and sequence: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG -after extracting substring: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 82 - - -Threading read: 61DFRAAXX100204:2:47:12270:6103, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:47:12270:6103 sequence is: -CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG -updatePathRecursively(readName=61DFRAAXX100204:2:47:12270:6103, locInSeq: 0 / 75, locInNode: 82 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:2:47:12270:6103) -CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 82 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 158 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:47:12270:6103 with length: 76 and base [76] ends at position [158] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for 61DFRAAXX100204:2:47:12270:6103 is [549] with total mm: 0 -Read 61DFRAAXX100204:2:47:12270:6103 seq CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:158,readEnd:76] , trimmed to: [549] -Threaded Read as: 61DFRAAXX100204:2:47:12270:6103 : [549] -ReadPath@Init: 61DFRAAXX100204:2:47:12270:6103 : [549] - mapped read [17]Read: >61DFRAAXX100204:2:47:8841:7694/2 0 504 51 555 AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC - -Read: 61DFRAAXX100204:2:47:8841:7694 has start: 0, end: 75 and sequence: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC -after extracting substring: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC -findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT -trying to start the mapping to node 451 at position: 53 - - -Threading read: 61DFRAAXX100204:2:47:8841:7694, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:47:8841:7694 sequence is: -AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC -updatePathRecursively(readName=61DFRAAXX100204:2:47:8841:7694, locInSeq: 0 / 75, locInNode: 53 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (61DFRAAXX100204:2:47:8841:7694) -AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 53 -zipper alignment mm: 0 -alignment divergence up to seq pos 44 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 97 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:47:8841:7694 base [44] ends at position [97] within node: 451 totaling 0 mismatches. --reached end of vertex: 451, exploring next vertices for continued path extension: [981] -Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] -Exploring extension from node: 451 to node: 981 -updatePathRecursively(readName=61DFRAAXX100204:2:47:8841:7694, locInSeq: 44 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:2:47:8841:7694) -GAGCACTCTGAACCCTGTGAGGCA 44 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -GAGCACTCTGAACCCTGTGAGGCA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 68 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 47 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:47:8841:7694 base [68] ends at position [47] within node: 981 totaling 0 mismatches. --reached end of vertex: 981, exploring next vertices for continued path extension: [549] -Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] -Exploring extension from node: 981 to node: 549 -updatePathRecursively(readName=61DFRAAXX100204:2:47:8841:7694, locInSeq: 68 / 75, locInNode: 23 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:2:47:8841:7694) -AGTCCACC 68 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGTCCACC 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 31 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:47:8841:7694 with length: 76 and base [76] ends at position [31] within node: 549 totaling 0 mismatches. -61DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 -Done with exploring paths from vertex: 981 -Paths and scores found are: - explored path: [549] w/ mm: 0 - AND best selected was: [549] w/ mm: 0 -61DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 -Done with exploring paths from vertex: 451 -Paths and scores found are: - explored path: [981, 549] w/ mm: 0 - AND best selected was: [981, 549] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:2:47:8841:7694 is [451, 981, 549] with total mm: 0 -Read 61DFRAAXX100204:2:47:8841:7694 seq AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:44] [981,nodeEnd:47,readEnd:68] [549,nodeEnd:31,readEnd:76] , trimmed to: [451, 981, 549] -Threaded Read as: 61DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] -ReadPath@Init: 61DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] - mapped read [18]Read: >61DFRAAXX100204:2:59:18912:18239/1 0 485 51 536 CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC - -Read: 61DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC -after extracting substring: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC -findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT -trying to start the mapping to node 451 at position: 34 - - -Threading read: 61DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:59:18912:18239 sequence is: -CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC -updatePathRecursively(readName=61DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 34 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (61DFRAAXX100204:2:59:18912:18239) -CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 34 -zipper alignment mm: 0 -alignment divergence up to seq pos 63 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 97 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:59:18912:18239 base [63] ends at position [97] within node: 451 totaling 0 mismatches. --reached end of vertex: 451, exploring next vertices for continued path extension: [981] -Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] -Exploring extension from node: 451 to node: 981 -updatePathRecursively(readName=61DFRAAXX100204:2:59:18912:18239, locInSeq: 63 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:2:59:18912:18239) -GAGCACTCTGAAC 63 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -GAGCACTCTGAAC 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 36 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [36] within node: 981 totaling 0 mismatches. -61DFRAAXX100204:2:59:18912:18239 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 -Done with exploring paths from vertex: 451 -Paths and scores found are: - explored path: [981] w/ mm: 0 - AND best selected was: [981] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:2:59:18912:18239 is [451, 981] with total mm: 0 -Read 61DFRAAXX100204:2:59:18912:18239 seq CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:63] [981,nodeEnd:36,readEnd:76] , trimmed to: [451, 981] -Threaded Read as: 61DFRAAXX100204:2:59:18912:18239 : [451, 981] -ReadPath@Init: 61DFRAAXX100204:2:59:18912:18239 : [451, 981] - mapped read [19]Read: >61DFRAAXX100204:2:59:18912:18239/2 0 612 51 663 AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC - -Read: 61DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC -after extracting substring: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 63 - - -Threading read: 61DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:59:18912:18239 sequence is: -AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC -updatePathRecursively(readName=61DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 63 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:2:59:18912:18239) -AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 63 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 139 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [139] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for 61DFRAAXX100204:2:59:18912:18239 is [549] with total mm: 0 -Read 61DFRAAXX100204:2:59:18912:18239 seq AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:139,readEnd:76] , trimmed to: [549] -Threaded Read as: 61DFRAAXX100204:2:59:18912:18239 : [549] -ReadPath@Init: 61DFRAAXX100204:2:59:18912:18239 : [549] - mapped read [20]Read: >61DFRAAXX100204:2:61:13619:6070/2 0 786 51 741 GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC - -Read: 61DFRAAXX100204:2:61:13619:6070 has start: 0, end: 75 and sequence: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC -after extracting substring: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC -findPathInGraph: V:786, with seq: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 786 at position: 0 - - -Threading read: 61DFRAAXX100204:2:61:13619:6070, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:61:13619:6070 sequence is: -GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC -updatePathRecursively(readName=61DFRAAXX100204:2:61:13619:6070, locInSeq: 0 / 75, locInNode: 0 / 49, totalNumMm: 0 - -trying to continue the mapping to node GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) --ALIGNING READ SEQ (61DFRAAXX100204:2:61:13619:6070) -GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 -To VERTEX (GCTAGGGGAA...GGGAGCCACC:W1(V786_D0)) SEQ: -GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 -zipper alignment mm: 0 -alignment divergence up to seq pos 50 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 50 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:61:13619:6070 base [50] ends at position [50] within node: 786 totaling 0 mismatches. --reached end of vertex: 786, exploring next vertices for continued path extension: [717] -Pursuing extension from : GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] -Exploring extension from node: 786 to node: 717 -updatePathRecursively(readName=61DFRAAXX100204:2:61:13619:6070, locInSeq: 50 / 75, locInNode: 23 / 64, totalNumMm: 0 - -trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) --ALIGNING READ SEQ (61DFRAAXX100204:2:61:13619:6070) -AGCCACAGGTACCTGATGGAAATGCC 50 -To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: -AGCCACAGGTACCTGATGGAAATGCC 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 49 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:61:13619:6070 with length: 76 and base [76] ends at position [49] within node: 717 totaling 0 mismatches. -61DFRAAXX100204:2:61:13619:6070 best path so far from vertex: 786 to : 717 = [717], with total mm: 0 -Done with exploring paths from vertex: 786 -Paths and scores found are: - explored path: [717] w/ mm: 0 - AND best selected was: [717] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:2:61:13619:6070 is [786, 717] with total mm: 0 -Read 61DFRAAXX100204:2:61:13619:6070 seq GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [786, 717] positions: [786,nodeEnd:50,readEnd:50] [717,nodeEnd:49,readEnd:76] , trimmed to: [786, 717] -Threaded Read as: 61DFRAAXX100204:2:61:13619:6070 : [786, 717] -ReadPath@Init: 61DFRAAXX100204:2:61:13619:6070 : [786, 717] - mapped read [21]Read: >61DFRAAXX100204:2:64:15138:21125/1 0 706 51 757 GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA - -Read: 61DFRAAXX100204:2:64:15138:21125 has start: 0, end: 75 and sequence: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA -after extracting substring: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 157 - - -Threading read: 61DFRAAXX100204:2:64:15138:21125, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:64:15138:21125 sequence is: -GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA -updatePathRecursively(readName=61DFRAAXX100204:2:64:15138:21125, locInSeq: 0 / 75, locInNode: 157 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:2:64:15138:21125) -GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 157 -zipper alignment mm: 0 -alignment divergence up to seq pos 34 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 191 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:64:15138:21125 base [34] ends at position [191] within node: 549 totaling 0 mismatches. --reached end of vertex: 549, exploring next vertices for continued path extension: [717] -Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] -Exploring extension from node: 549 to node: 717 -updatePathRecursively(readName=61DFRAAXX100204:2:64:15138:21125, locInSeq: 34 / 75, locInNode: 23 / 64, totalNumMm: 0 - -trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) --ALIGNING READ SEQ (61DFRAAXX100204:2:64:15138:21125) -AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 34 -To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: -AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 65 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:64:15138:21125 with length: 76 and base [76] ends at position [65] within node: 717 totaling 0 mismatches. -61DFRAAXX100204:2:64:15138:21125 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 -Done with exploring paths from vertex: 549 -Paths and scores found are: - explored path: [717] w/ mm: 0 - AND best selected was: [717] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:2:64:15138:21125 is [549, 717] with total mm: 0 -Read 61DFRAAXX100204:2:64:15138:21125 seq GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:34] [717,nodeEnd:65,readEnd:76] , trimmed to: [549, 717] -Threaded Read as: 61DFRAAXX100204:2:64:15138:21125 : [549, 717] -ReadPath@Init: 61DFRAAXX100204:2:64:15138:21125 : [549, 717] - mapped read [22]Read: >61DFRAAXX100204:2:75:16853:12097/1 0 507 51 558 GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC - -Read: 61DFRAAXX100204:2:75:16853:12097 has start: 0, end: 75 and sequence: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC -after extracting substring: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC -findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT -trying to start the mapping to node 451 at position: 56 - - -Threading read: 61DFRAAXX100204:2:75:16853:12097, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:75:16853:12097 sequence is: -GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC -updatePathRecursively(readName=61DFRAAXX100204:2:75:16853:12097, locInSeq: 0 / 75, locInNode: 56 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (61DFRAAXX100204:2:75:16853:12097) -GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 56 -zipper alignment mm: 0 -alignment divergence up to seq pos 41 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 97 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:75:16853:12097 base [41] ends at position [97] within node: 451 totaling 0 mismatches. --reached end of vertex: 451, exploring next vertices for continued path extension: [981] -Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] -Exploring extension from node: 451 to node: 981 -updatePathRecursively(readName=61DFRAAXX100204:2:75:16853:12097, locInSeq: 41 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (61DFRAAXX100204:2:75:16853:12097) -GAGCACTCTGAACCCTGTGAGGCA 41 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -GAGCACTCTGAACCCTGTGAGGCA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 65 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 47 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:75:16853:12097 base [65] ends at position [47] within node: 981 totaling 0 mismatches. --reached end of vertex: 981, exploring next vertices for continued path extension: [549] -Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] -Exploring extension from node: 981 to node: 549 -updatePathRecursively(readName=61DFRAAXX100204:2:75:16853:12097, locInSeq: 65 / 75, locInNode: 23 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:2:75:16853:12097) -AGTCCACCACC 65 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGTCCACCACC 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 34 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:75:16853:12097 with length: 76 and base [76] ends at position [34] within node: 549 totaling 0 mismatches. -61DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 -Done with exploring paths from vertex: 981 -Paths and scores found are: - explored path: [549] w/ mm: 0 - AND best selected was: [549] w/ mm: 0 -61DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 -Done with exploring paths from vertex: 451 -Paths and scores found are: - explored path: [981, 549] w/ mm: 0 - AND best selected was: [981, 549] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:2:75:16853:12097 is [451, 981, 549] with total mm: 0 -Read 61DFRAAXX100204:2:75:16853:12097 seq GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:41] [981,nodeEnd:47,readEnd:65] [549,nodeEnd:34,readEnd:76] , trimmed to: [451, 981, 549] -Threaded Read as: 61DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] -ReadPath@Init: 61DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] - mapped read [23]Read: >61DFRAAXX100204:2:90:12533:11254/1 0 696 51 747 GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA - -Read: 61DFRAAXX100204:2:90:12533:11254 has start: 0, end: 75 and sequence: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA -after extracting substring: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 147 - - -Threading read: 61DFRAAXX100204:2:90:12533:11254, length: 76, allowing for 4 max mismatches. -Read: 61DFRAAXX100204:2:90:12533:11254 sequence is: -GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA -updatePathRecursively(readName=61DFRAAXX100204:2:90:12533:11254, locInSeq: 0 / 75, locInNode: 147 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (61DFRAAXX100204:2:90:12533:11254) -GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 147 -zipper alignment mm: 0 -alignment divergence up to seq pos 44 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 191 = 0.0 -Reached end of node sequence. Read61DFRAAXX100204:2:90:12533:11254 base [44] ends at position [191] within node: 549 totaling 0 mismatches. --reached end of vertex: 549, exploring next vertices for continued path extension: [717] -Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] -Exploring extension from node: 549 to node: 717 -updatePathRecursively(readName=61DFRAAXX100204:2:90:12533:11254, locInSeq: 44 / 75, locInNode: 23 / 64, totalNumMm: 0 - -trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) --ALIGNING READ SEQ (61DFRAAXX100204:2:90:12533:11254) -AGCCACAGGTACCTGATGGAAATGCCGGCTCA 44 -To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: -AGCCACAGGTACCTGATGGAAATGCCGGCTCA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 55 = 0.0 -Reached end of read sequence. Read61DFRAAXX100204:2:90:12533:11254 with length: 76 and base [76] ends at position [55] within node: 717 totaling 0 mismatches. -61DFRAAXX100204:2:90:12533:11254 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 -Done with exploring paths from vertex: 549 -Paths and scores found are: - explored path: [717] w/ mm: 0 - AND best selected was: [717] w/ mm: 0 -FINAL BEST PATH for 61DFRAAXX100204:2:90:12533:11254 is [549, 717] with total mm: 0 -Read 61DFRAAXX100204:2:90:12533:11254 seq GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:44] [717,nodeEnd:55,readEnd:76] , trimmed to: [549, 717] -Threaded Read as: 61DFRAAXX100204:2:90:12533:11254 : [549, 717] -ReadPath@Init: 61DFRAAXX100204:2:90:12533:11254 : [549, 717] - mapped read [24]Read: >r261DFRAAXX100204:1:112:16960:13532/1 0 654 51 705 AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA - -Read: r261DFRAAXX100204:1:112:16960:13532 has start: 0, end: 75 and sequence: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA -after extracting substring: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 105 - - -Threading read: r261DFRAAXX100204:1:112:16960:13532, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:1:112:16960:13532 sequence is: -AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA -updatePathRecursively(readName=r261DFRAAXX100204:1:112:16960:13532, locInSeq: 0 / 75, locInNode: 105 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:1:112:16960:13532) -AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 105 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 181 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:1:112:16960:13532 with length: 76 and base [76] ends at position [181] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for r261DFRAAXX100204:1:112:16960:13532 is [549] with total mm: 0 -Read r261DFRAAXX100204:1:112:16960:13532 seq AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:181,readEnd:76] , trimmed to: [549] -Threaded Read as: r261DFRAAXX100204:1:112:16960:13532 : [549] -ReadPath@Init: r261DFRAAXX100204:1:112:16960:13532 : [549] - mapped read [25]Read: >r261DFRAAXX100204:1:113:7690:4285/2 0 538 51 589 GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG - -Read: r261DFRAAXX100204:1:113:7690:4285 has start: 0, end: 75 and sequence: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG -after extracting substring: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG -findPathInGraph: V:981, with seq: GGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA -trying to start the mapping to node 981 at position: 12 - - -Threading read: r261DFRAAXX100204:1:113:7690:4285, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:1:113:7690:4285 sequence is: -GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG -updatePathRecursively(readName=r261DFRAAXX100204:1:113:7690:4285, locInSeq: 0 / 75, locInNode: 12 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:1:113:7690:4285) -GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAA 0 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA 12 -shortcircuiting the zipper test, too many MM or execeeding local seq divergence - *Trying again using full DP alignment: --running Needleman-Wunsch alignment of vertex to read -Read 1 -GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCG 49 - |||||||||||||||||||||||||||||||||| -Vertex 1 GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA--------------- 35 - - -vertex end gaps: 15 -read end gaps: 0 -mismatches encountered: 1 -alignment divergence up to seq pos 34 = mm: 1, div:0.029411765 -local vertex alignment divergence = 1 / 47 = 0.021276595 -Reached end of node sequence. Readr261DFRAAXX100204:1:113:7690:4285 base [34] ends at position [47] within node: 981 totaling 1 mismatches. --reached end of vertex: 981, exploring next vertices for continued path extension: [549] -Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] -Exploring extension from node: 981 to node: 549 -updatePathRecursively(readName=r261DFRAAXX100204:1:113:7690:4285, locInSeq: 34 / 75, locInNode: 23 / 190, totalNumMm: 1 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:1:113:7690:4285) -AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 34 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 -local vertex alignment divergence = 0 / 65 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:1:113:7690:4285 with length: 76 and base [76] ends at position [65] within node: 549 totaling 0 mismatches. -r261DFRAAXX100204:1:113:7690:4285 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 -Done with exploring paths from vertex: 981 -Paths and scores found are: - explored path: [549] w/ mm: 0 - AND best selected was: [549] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:1:113:7690:4285 is [981, 549] with total mm: 1 -Read r261DFRAAXX100204:1:113:7690:4285 seq GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [981, 549] positions: [981,nodeEnd:47,readEnd:34] [549,nodeEnd:65,readEnd:76] , trimmed to: [981, 549] -Threaded Read as: r261DFRAAXX100204:1:113:7690:4285 : [981, 549] -ReadPath@Init: r261DFRAAXX100204:1:113:7690:4285 : [981, 549] - mapped read [26]Read: >r261DFRAAXX100204:1:115:8211:5116/2 0 473 51 524 AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG - -Read: r261DFRAAXX100204:1:115:8211:5116 has start: 0, end: 75 and sequence: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG -after extracting substring: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG -findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT -trying to start the mapping to node 451 at position: 22 - - -Threading read: r261DFRAAXX100204:1:115:8211:5116, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:1:115:8211:5116 sequence is: -AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG -updatePathRecursively(readName=r261DFRAAXX100204:1:115:8211:5116, locInSeq: 0 / 75, locInNode: 22 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:1:115:8211:5116) -AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 22 -zipper alignment mm: 0 -alignment divergence up to seq pos 75 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 97 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:1:115:8211:5116 base [75] ends at position [97] within node: 451 totaling 0 mismatches. --reached end of vertex: 451, exploring next vertices for continued path extension: [981] -Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] -Exploring extension from node: 451 to node: 981 -updatePathRecursively(readName=r261DFRAAXX100204:1:115:8211:5116, locInSeq: 75 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:1:115:8211:5116) -G 75 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -G 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 24 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:1:115:8211:5116 with length: 76 and base [76] ends at position [24] within node: 981 totaling 0 mismatches. -r261DFRAAXX100204:1:115:8211:5116 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 -Done with exploring paths from vertex: 451 -Paths and scores found are: - explored path: [981] w/ mm: 0 - AND best selected was: [981] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:1:115:8211:5116 is [451, 981] with total mm: 0 -Read r261DFRAAXX100204:1:115:8211:5116 seq AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:75] [981,nodeEnd:24,readEnd:76] , trimmed to: [451, 981] -Threaded Read as: r261DFRAAXX100204:1:115:8211:5116 : [451, 981] -ReadPath@Init: r261DFRAAXX100204:1:115:8211:5116 : [451, 981] - mapped read [27]Read: >r261DFRAAXX100204:1:20:5538:6890/2 0 567 51 618 AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT - -Read: r261DFRAAXX100204:1:20:5538:6890 has start: 0, end: 75 and sequence: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT -after extracting substring: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 18 - - -Threading read: r261DFRAAXX100204:1:20:5538:6890, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:1:20:5538:6890 sequence is: -AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT -updatePathRecursively(readName=r261DFRAAXX100204:1:20:5538:6890, locInSeq: 0 / 75, locInNode: 18 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:1:20:5538:6890) -AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 18 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 94 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:1:20:5538:6890 with length: 76 and base [76] ends at position [94] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for r261DFRAAXX100204:1:20:5538:6890 is [549] with total mm: 0 -Read r261DFRAAXX100204:1:20:5538:6890 seq AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:94,readEnd:76] , trimmed to: [549] -Threaded Read as: r261DFRAAXX100204:1:20:5538:6890 : [549] -ReadPath@Init: r261DFRAAXX100204:1:20:5538:6890 : [549] - mapped read [28]Read: >r261DFRAAXX100204:1:39:8793:18196/1 0 380 51 431 GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA - -Read: r261DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA -after extracting substring: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA -findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG -trying to start the mapping to node 380 at position: 0 - - -Threading read: r261DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:1:39:8793:18196 sequence is: -GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA -updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 - -trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) --ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) -GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 -To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: -GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 -zipper alignment mm: 0 -alignment divergence up to seq pos 59 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 59 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:1:39:8793:18196 base [59] ends at position [59] within node: 380 totaling 0 mismatches. --reached end of vertex: 380, exploring next vertices for continued path extension: [982] -Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] -Exploring extension from node: 380 to node: 982 -updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 59 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) -CCTCATCAGCAAGAAGA 59 -To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: -CCTCATCAGCAAGAAGA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 40 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [40] within node: 982 totaling 0 mismatches. -r261DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 380 to : 982 = [982], with total mm: 0 -Done with exploring paths from vertex: 380 -Paths and scores found are: - explored path: [982] w/ mm: 0 - AND best selected was: [982] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:1:39:8793:18196 is [380, 982] with total mm: 0 -Read r261DFRAAXX100204:1:39:8793:18196 seq GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982] positions: [380,nodeEnd:59,readEnd:59] [982,nodeEnd:40,readEnd:76] , trimmed to: [380, 982] -Threaded Read as: r261DFRAAXX100204:1:39:8793:18196 : [380, 982] -ReadPath@Init: r261DFRAAXX100204:1:39:8793:18196 : [380, 982] - mapped read [29]Read: >r261DFRAAXX100204:1:39:8793:18196/2 0 502 51 553 GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA - -Read: r261DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA -after extracting substring: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA -findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT -trying to start the mapping to node 451 at position: 51 - - -Threading read: r261DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:1:39:8793:18196 sequence is: -GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA -updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 51 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) -GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 51 -zipper alignment mm: 0 -alignment divergence up to seq pos 46 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 97 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:1:39:8793:18196 base [46] ends at position [97] within node: 451 totaling 0 mismatches. --reached end of vertex: 451, exploring next vertices for continued path extension: [981] -Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] -Exploring extension from node: 451 to node: 981 -updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 46 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) -CAGCACTCTGAACCCTGTGAGGCA 46 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -GAGCACTCTGAACCCTGTGAGGCA 23 -zipper alignment mm: 1 -alignment divergence up to seq pos 70 = mm: 1, div:0.014285714 -local vertex alignment divergence = 1 / 47 = 0.021276595 -Reached end of node sequence. Readr261DFRAAXX100204:1:39:8793:18196 base [70] ends at position [47] within node: 981 totaling 1 mismatches. --reached end of vertex: 981, exploring next vertices for continued path extension: [549] -Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] -Exploring extension from node: 981 to node: 549 -updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 70 / 75, locInNode: 23 / 190, totalNumMm: 1 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) -AGTCCA 70 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGTCCA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 -local vertex alignment divergence = 0 / 29 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [29] within node: 549 totaling 0 mismatches. -r261DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 -Done with exploring paths from vertex: 981 -Paths and scores found are: - explored path: [549] w/ mm: 0 - AND best selected was: [549] w/ mm: 0 -r261DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 1 -Done with exploring paths from vertex: 451 -Paths and scores found are: - explored path: [981, 549] w/ mm: 1 - AND best selected was: [981, 549] w/ mm: 1 -FINAL BEST PATH for r261DFRAAXX100204:1:39:8793:18196 is [451, 981, 549] with total mm: 1 -Read r261DFRAAXX100204:1:39:8793:18196 seq GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:46] [981,nodeEnd:47,readEnd:70] [549,nodeEnd:29,readEnd:76] , trimmed to: [451, 981, 549] -Threaded Read as: r261DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] -ReadPath@Init: r261DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] - mapped read [30]Read: >r261DFRAAXX100204:1:67:9991:2232/1 0 401 51 452 GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG - -Read: r261DFRAAXX100204:1:67:9991:2232 has start: 0, end: 75 and sequence: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG -after extracting substring: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG -findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG -trying to start the mapping to node 380 at position: 21 - - -Threading read: r261DFRAAXX100204:1:67:9991:2232, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:1:67:9991:2232 sequence is: -GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG -updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 0 / 75, locInNode: 21 / 58, totalNumMm: 0 - -trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) --ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) -GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 -To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: -GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 21 -zipper alignment mm: 0 -alignment divergence up to seq pos 38 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 59 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:1:67:9991:2232 base [38] ends at position [59] within node: 380 totaling 0 mismatches. --reached end of vertex: 380, exploring next vertices for continued path extension: [982] -Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] -Exploring extension from node: 380 to node: 982 -updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 38 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) -CCTCATCAGCAAGAAGAAATCTTT 38 -To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: -CCTCATCAGCAAGAAGAAATCTTT 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 62 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 47 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:1:67:9991:2232 base [62] ends at position [47] within node: 982 totaling 0 mismatches. --reached end of vertex: 982, exploring next vertices for continued path extension: [440] -Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] -Exploring extension from node: 982 to node: 440 -updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 62 / 75, locInNode: 23 / 33, totalNumMm: 0 - -trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) --ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) -CTTTCCAAGTA 62 -To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: -CTTTCCAAGTA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 73 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 34 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:1:67:9991:2232 base [73] ends at position [34] within node: 440 totaling 0 mismatches. --reached end of vertex: 440, exploring next vertices for continued path extension: [451] -Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] -Exploring extension from node: 440 to node: 451 -updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 73 / 75, locInNode: 23 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) -GTG 73 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GTG 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 26 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:1:67:9991:2232 with length: 76 and base [76] ends at position [26] within node: 451 totaling 0 mismatches. -r261DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 -Done with exploring paths from vertex: 440 -Paths and scores found are: - explored path: [451] w/ mm: 0 - AND best selected was: [451] w/ mm: 0 -r261DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 -Done with exploring paths from vertex: 982 -Paths and scores found are: - explored path: [440, 451] w/ mm: 0 - AND best selected was: [440, 451] w/ mm: 0 -r261DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 -Done with exploring paths from vertex: 380 -Paths and scores found are: - explored path: [982, 440, 451] w/ mm: 0 - AND best selected was: [982, 440, 451] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:1:67:9991:2232 is [380, 982, 440, 451] with total mm: 0 -Read r261DFRAAXX100204:1:67:9991:2232 seq GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:38] [982,nodeEnd:47,readEnd:62] [440,nodeEnd:34,readEnd:73] [451,nodeEnd:26,readEnd:76] , trimmed to: [380, 982, 440, 451] -Threaded Read as: r261DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] -ReadPath@Init: r261DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] - mapped read [31]Read: >r261DFRAAXX100204:1:70:1041:1268/1 18 680 25 687 GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG - -Read: r261DFRAAXX100204:1:70:1041:1268 has start: 18, end: 49 and sequence: GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG -after extracting substring: TGACAGACTCTCTAAGGGACATATGGGAGCTA -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 131 - - -Threading read: r261DFRAAXX100204:1:70:1041:1268, length: 32, allowing for 2 max mismatches. -Read: r261DFRAAXX100204:1:70:1041:1268 sequence is: -TGACAGACTCTCTAAGGGACATATGGGAGCTA -updatePathRecursively(readName=r261DFRAAXX100204:1:70:1041:1268, locInSeq: 0 / 31, locInNode: 131 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:1:70:1041:1268) -TGACAGACTCTCTAAGGGACATATGGGAGCTA 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -TGACAGACTCTCTAAGGGACATATGGGAGCTA 131 -zipper alignment mm: 0 -alignment divergence up to seq pos 32 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 163 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:1:70:1041:1268 with length: 32 and base [32] ends at position [163] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for r261DFRAAXX100204:1:70:1041:1268 is [549] with total mm: 0 -Read r261DFRAAXX100204:1:70:1041:1268 seq TGACAGACTCTCTAAGGGACATATGGGAGCTA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:163,readEnd:32] , trimmed to: [549] -Threaded Read as: r261DFRAAXX100204:1:70:1041:1268 : [549] -ReadPath@Init: r261DFRAAXX100204:1:70:1041:1268 : [549] - mapped read [32]Read: >r261DFRAAXX100204:1:85:13720:15251/1 0 639 51 690 TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT - -Read: r261DFRAAXX100204:1:85:13720:15251 has start: 0, end: 75 and sequence: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT -after extracting substring: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 90 - - -Threading read: r261DFRAAXX100204:1:85:13720:15251, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:1:85:13720:15251 sequence is: -TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT -updatePathRecursively(readName=r261DFRAAXX100204:1:85:13720:15251, locInSeq: 0 / 75, locInNode: 90 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:1:85:13720:15251) -TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 90 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 166 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:1:85:13720:15251 with length: 76 and base [76] ends at position [166] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for r261DFRAAXX100204:1:85:13720:15251 is [549] with total mm: 0 -Read r261DFRAAXX100204:1:85:13720:15251 seq TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:166,readEnd:76] , trimmed to: [549] -Threaded Read as: r261DFRAAXX100204:1:85:13720:15251 : [549] -ReadPath@Init: r261DFRAAXX100204:1:85:13720:15251 : [549] - mapped read [33]Read: >r261DFRAAXX100204:2:13:7749:17373/2 0 413 51 464 ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG - -Read: r261DFRAAXX100204:2:13:7749:17373 has start: 0, end: 75 and sequence: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG -after extracting substring: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG -findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG -trying to start the mapping to node 380 at position: 33 - - -Threading read: r261DFRAAXX100204:2:13:7749:17373, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:13:7749:17373 sequence is: -ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG -updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 0 / 75, locInNode: 33 / 58, totalNumMm: 0 - -trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) --ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) -ACTGGCTACAAACAGACTTCCTCAAG 0 -To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: -ACTGGCTACAAACAGACTTCCTCAAG 33 -zipper alignment mm: 0 -alignment divergence up to seq pos 26 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 59 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:13:7749:17373 base [26] ends at position [59] within node: 380 totaling 0 mismatches. --reached end of vertex: 380, exploring next vertices for continued path extension: [982] -Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] -Exploring extension from node: 380 to node: 982 -updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 26 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) -CCTCATCAGCAAGAAGAAATCTTT 26 -To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: -CCTCATCAGCAAGAAGAAATCTTT 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 50 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 47 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:13:7749:17373 base [50] ends at position [47] within node: 982 totaling 0 mismatches. --reached end of vertex: 982, exploring next vertices for continued path extension: [440] -Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] -Exploring extension from node: 982 to node: 440 -updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 50 / 75, locInNode: 23 / 33, totalNumMm: 0 - -trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) --ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) -CTTTCCAAGTA 50 -To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: -CTTTCCAAGTA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 61 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 34 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:13:7749:17373 base [61] ends at position [34] within node: 440 totaling 0 mismatches. --reached end of vertex: 440, exploring next vertices for continued path extension: [451] -Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] -Exploring extension from node: 440 to node: 451 -updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 61 / 75, locInNode: 23 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) -GTGTCTTAACTCAGG 61 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GTGTCTTAACTCAGG 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 38 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:13:7749:17373 with length: 76 and base [76] ends at position [38] within node: 451 totaling 0 mismatches. -r261DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 -Done with exploring paths from vertex: 440 -Paths and scores found are: - explored path: [451] w/ mm: 0 - AND best selected was: [451] w/ mm: 0 -r261DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 -Done with exploring paths from vertex: 982 -Paths and scores found are: - explored path: [440, 451] w/ mm: 0 - AND best selected was: [440, 451] w/ mm: 0 -r261DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 -Done with exploring paths from vertex: 380 -Paths and scores found are: - explored path: [982, 440, 451] w/ mm: 0 - AND best selected was: [982, 440, 451] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:2:13:7749:17373 is [380, 982, 440, 451] with total mm: 0 -Read r261DFRAAXX100204:2:13:7749:17373 seq ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:26] [982,nodeEnd:47,readEnd:50] [440,nodeEnd:34,readEnd:61] [451,nodeEnd:38,readEnd:76] , trimmed to: [380, 982, 440, 451] -Threaded Read as: r261DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] -ReadPath@Init: r261DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] - mapped read [34]Read: >r261DFRAAXX100204:2:18:10392:2962/1 0 411 51 462 CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA - -Read: r261DFRAAXX100204:2:18:10392:2962 has start: 0, end: 75 and sequence: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA -after extracting substring: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA -findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG -trying to start the mapping to node 380 at position: 31 - - -Threading read: r261DFRAAXX100204:2:18:10392:2962, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:18:10392:2962 sequence is: -CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA -updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 0 / 75, locInNode: 31 / 58, totalNumMm: 0 - -trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) --ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) -CTACTGGCTACAAACAGACTTCCTCAAG 0 -To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: -CTACTGGCTACAAACAGACTTCCTCAAG 31 -zipper alignment mm: 0 -alignment divergence up to seq pos 28 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 59 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:18:10392:2962 base [28] ends at position [59] within node: 380 totaling 0 mismatches. --reached end of vertex: 380, exploring next vertices for continued path extension: [982] -Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] -Exploring extension from node: 380 to node: 982 -updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 28 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) -GCTCATCAGCAAGAAGAAATCTTT 28 -To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: -CCTCATCAGCAAGAAGAAATCTTT 23 -zipper alignment mm: 1 -alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 -local vertex alignment divergence = 1 / 47 = 0.021276595 -Reached end of node sequence. Readr261DFRAAXX100204:2:18:10392:2962 base [52] ends at position [47] within node: 982 totaling 1 mismatches. --reached end of vertex: 982, exploring next vertices for continued path extension: [440] -Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] -Exploring extension from node: 982 to node: 440 -updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 52 / 75, locInNode: 23 / 33, totalNumMm: 1 - -trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) --ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) -CTTTCCAAGTA 52 -To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: -CTTTCCAAGTA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 63 = mm: 1, div:0.015873017 -local vertex alignment divergence = 0 / 34 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:18:10392:2962 base [63] ends at position [34] within node: 440 totaling 0 mismatches. --reached end of vertex: 440, exploring next vertices for continued path extension: [451] -Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] -Exploring extension from node: 440 to node: 451 -updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 63 / 75, locInNode: 23 / 96, totalNumMm: 1 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) -GTGTCTTAACTCA 63 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GTGTCTTAACTCA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 -local vertex alignment divergence = 0 / 36 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:18:10392:2962 with length: 76 and base [76] ends at position [36] within node: 451 totaling 0 mismatches. -r261DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 -Done with exploring paths from vertex: 440 -Paths and scores found are: - explored path: [451] w/ mm: 0 - AND best selected was: [451] w/ mm: 0 -r261DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 -Done with exploring paths from vertex: 982 -Paths and scores found are: - explored path: [440, 451] w/ mm: 0 - AND best selected was: [440, 451] w/ mm: 0 -r261DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 1 -Done with exploring paths from vertex: 380 -Paths and scores found are: - explored path: [982, 440, 451] w/ mm: 1 - AND best selected was: [982, 440, 451] w/ mm: 1 -FINAL BEST PATH for r261DFRAAXX100204:2:18:10392:2962 is [380, 982, 440, 451] with total mm: 1 -Read r261DFRAAXX100204:2:18:10392:2962 seq CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:28] [982,nodeEnd:47,readEnd:52] [440,nodeEnd:34,readEnd:63] [451,nodeEnd:36,readEnd:76] , trimmed to: [380, 982, 440, 451] -Threaded Read as: r261DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] -ReadPath@Init: r261DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] - mapped read [35]Read: >r261DFRAAXX100204:2:27:5714:7307/1 0 657 51 708 GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG - -Read: r261DFRAAXX100204:2:27:5714:7307 has start: 0, end: 75 and sequence: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG -after extracting substring: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 108 - - -Threading read: r261DFRAAXX100204:2:27:5714:7307, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:27:5714:7307 sequence is: -GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG -updatePathRecursively(readName=r261DFRAAXX100204:2:27:5714:7307, locInSeq: 0 / 75, locInNode: 108 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:2:27:5714:7307) -GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 108 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 184 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:27:5714:7307 with length: 76 and base [76] ends at position [184] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for r261DFRAAXX100204:2:27:5714:7307 is [549] with total mm: 0 -Read r261DFRAAXX100204:2:27:5714:7307 seq GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:184,readEnd:76] , trimmed to: [549] -Threaded Read as: r261DFRAAXX100204:2:27:5714:7307 : [549] -ReadPath@Init: r261DFRAAXX100204:2:27:5714:7307 : [549] - mapped read [36]Read: >r261DFRAAXX100204:2:33:12784:13782/1 0 606 51 657 TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG - -Read: r261DFRAAXX100204:2:33:12784:13782 has start: 0, end: 75 and sequence: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG -after extracting substring: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 57 - - -Threading read: r261DFRAAXX100204:2:33:12784:13782, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:33:12784:13782 sequence is: -TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG -updatePathRecursively(readName=r261DFRAAXX100204:2:33:12784:13782, locInSeq: 0 / 75, locInNode: 57 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:2:33:12784:13782) -TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 57 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 133 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:33:12784:13782 with length: 76 and base [76] ends at position [133] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for r261DFRAAXX100204:2:33:12784:13782 is [549] with total mm: 0 -Read r261DFRAAXX100204:2:33:12784:13782 seq TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:133,readEnd:76] , trimmed to: [549] -Threaded Read as: r261DFRAAXX100204:2:33:12784:13782 : [549] -ReadPath@Init: r261DFRAAXX100204:2:33:12784:13782 : [549] - mapped read [37]Read: >r261DFRAAXX100204:2:34:11574:10433/2 0 422 51 473 AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG - -Read: r261DFRAAXX100204:2:34:11574:10433 has start: 0, end: 75 and sequence: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG -after extracting substring: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG -findPathInGraph: V:982, with seq: GGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT -trying to start the mapping to node 982 at position: 5 - - -Threading read: r261DFRAAXX100204:2:34:11574:10433, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:34:11574:10433 sequence is: -AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG -updatePathRecursively(readName=r261DFRAAXX100204:2:34:11574:10433, locInSeq: 0 / 75, locInNode: 5 / 46, totalNumMm: 0 - -trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:34:11574:10433) -AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTC 0 -To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: -CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT 5 -shortcircuiting the zipper test, too many MM or execeeding local seq divergence - *Trying again using full DP alignment: --running Needleman-Wunsch alignment of vertex to read -Read 1 -AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAA 49 - ||||||||||||||||||||||||||||||||||||||||| -Vertex 1 CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT-------- 42 - - -vertex end gaps: 8 -read end gaps: 0 -mismatches encountered: 1 -alignment divergence up to seq pos 41 = mm: 1, div:0.024390243 -local vertex alignment divergence = 1 / 47 = 0.021276595 -Reached end of node sequence. Readr261DFRAAXX100204:2:34:11574:10433 base [41] ends at position [47] within node: 982 totaling 1 mismatches. --reached end of vertex: 982, exploring next vertices for continued path extension: [440] -Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] -Exploring extension from node: 982 to node: 440 -updatePathRecursively(readName=r261DFRAAXX100204:2:34:11574:10433, locInSeq: 41 / 75, locInNode: 23 / 33, totalNumMm: 1 - -trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) --ALIGNING READ SEQ (r261DFRAAXX100204:2:34:11574:10433) -CTTTCCAAGTA 41 -To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: -CTTTCCAAGTA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 -local vertex alignment divergence = 0 / 34 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:34:11574:10433 base [52] ends at position [34] within node: 440 totaling 0 mismatches. --reached end of vertex: 440, exploring next vertices for continued path extension: [451] -Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] -Exploring extension from node: 440 to node: 451 -updatePathRecursively(readName=r261DFRAAXX100204:2:34:11574:10433, locInSeq: 52 / 75, locInNode: 23 / 96, totalNumMm: 1 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:34:11574:10433) -GTGTCTTAACTCAGGAGATCATGG 52 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GTGTCTTAACTCAGGAGATCATGG 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 -local vertex alignment divergence = 0 / 47 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:34:11574:10433 with length: 76 and base [76] ends at position [47] within node: 451 totaling 0 mismatches. -r261DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 -Done with exploring paths from vertex: 440 -Paths and scores found are: - explored path: [451] w/ mm: 0 - AND best selected was: [451] w/ mm: 0 -r261DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 -Done with exploring paths from vertex: 982 -Paths and scores found are: - explored path: [440, 451] w/ mm: 0 - AND best selected was: [440, 451] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:2:34:11574:10433 is [982, 440, 451] with total mm: 1 -Read r261DFRAAXX100204:2:34:11574:10433 seq AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [982, 440, 451] positions: [982,nodeEnd:47,readEnd:41] [440,nodeEnd:34,readEnd:52] [451,nodeEnd:47,readEnd:76] , trimmed to: [982, 440, 451] -Threaded Read as: r261DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] -ReadPath@Init: r261DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] - mapped read [38]Read: >r261DFRAAXX100204:2:43:2649:2845/2 0 945 51 466 AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG - -Read: r261DFRAAXX100204:2:43:2649:2845 has start: 0, end: 75 and sequence: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG -after extracting substring: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG -findPathInGraph: V:945, with seq: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA -trying to start the mapping to node 945 at position: 0 - - -Threading read: r261DFRAAXX100204:2:43:2649:2845, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:43:2649:2845 sequence is: -AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG -updatePathRecursively(readName=r261DFRAAXX100204:2:43:2649:2845, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 - -trying to continue the mapping to node AGAATACAAA...TTTCCAAGTA:W1(V945_D0) --ALIGNING READ SEQ (r261DFRAAXX100204:2:43:2649:2845) -AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 -To VERTEX (AGAATACAAA...TTTCCAAGTA:W1(V945_D0)) SEQ: -AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 -zipper alignment mm: 0 -alignment divergence up to seq pos 59 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 59 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:43:2649:2845 base [59] ends at position [59] within node: 945 totaling 0 mismatches. --reached end of vertex: 945, exploring next vertices for continued path extension: [451] -Pursuing extension from : AGAATACAAA...TTTCCAAGTA:W1(V945_D0) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] -Exploring extension from node: 945 to node: 451 -updatePathRecursively(readName=r261DFRAAXX100204:2:43:2649:2845, locInSeq: 59 / 75, locInNode: 23 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:43:2649:2845) -GTGTCTTAACTCAGGAG 59 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GTGTCTTAACTCAGGAG 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 40 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:43:2649:2845 with length: 76 and base [76] ends at position [40] within node: 451 totaling 0 mismatches. -r261DFRAAXX100204:2:43:2649:2845 best path so far from vertex: 945 to : 451 = [451], with total mm: 0 -Done with exploring paths from vertex: 945 -Paths and scores found are: - explored path: [451] w/ mm: 0 - AND best selected was: [451] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:2:43:2649:2845 is [945, 451] with total mm: 0 -Read r261DFRAAXX100204:2:43:2649:2845 seq AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [945, 451] positions: [945,nodeEnd:59,readEnd:59] [451,nodeEnd:40,readEnd:76] , trimmed to: [945, 451] -Threaded Read as: r261DFRAAXX100204:2:43:2649:2845 : [945, 451] -ReadPath@Init: r261DFRAAXX100204:2:43:2649:2845 : [945, 451] - mapped read [39]Read: >r261DFRAAXX100204:2:47:12270:6103/1 0 631 51 682 CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG - -Read: r261DFRAAXX100204:2:47:12270:6103 has start: 0, end: 75 and sequence: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG -after extracting substring: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 82 - - -Threading read: r261DFRAAXX100204:2:47:12270:6103, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:47:12270:6103 sequence is: -CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG -updatePathRecursively(readName=r261DFRAAXX100204:2:47:12270:6103, locInSeq: 0 / 75, locInNode: 82 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:2:47:12270:6103) -CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 82 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 158 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:47:12270:6103 with length: 76 and base [76] ends at position [158] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for r261DFRAAXX100204:2:47:12270:6103 is [549] with total mm: 0 -Read r261DFRAAXX100204:2:47:12270:6103 seq CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:158,readEnd:76] , trimmed to: [549] -Threaded Read as: r261DFRAAXX100204:2:47:12270:6103 : [549] -ReadPath@Init: r261DFRAAXX100204:2:47:12270:6103 : [549] - mapped read [40]Read: >r261DFRAAXX100204:2:47:8841:7694/2 0 504 51 555 AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC - -Read: r261DFRAAXX100204:2:47:8841:7694 has start: 0, end: 75 and sequence: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC -after extracting substring: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC -findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT -trying to start the mapping to node 451 at position: 53 - - -Threading read: r261DFRAAXX100204:2:47:8841:7694, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:47:8841:7694 sequence is: -AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC -updatePathRecursively(readName=r261DFRAAXX100204:2:47:8841:7694, locInSeq: 0 / 75, locInNode: 53 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:47:8841:7694) -AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 53 -zipper alignment mm: 0 -alignment divergence up to seq pos 44 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 97 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:47:8841:7694 base [44] ends at position [97] within node: 451 totaling 0 mismatches. --reached end of vertex: 451, exploring next vertices for continued path extension: [981] -Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] -Exploring extension from node: 451 to node: 981 -updatePathRecursively(readName=r261DFRAAXX100204:2:47:8841:7694, locInSeq: 44 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:47:8841:7694) -GAGCACTCTGAACCCTGTGAGGCA 44 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -GAGCACTCTGAACCCTGTGAGGCA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 68 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 47 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:47:8841:7694 base [68] ends at position [47] within node: 981 totaling 0 mismatches. --reached end of vertex: 981, exploring next vertices for continued path extension: [549] -Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] -Exploring extension from node: 981 to node: 549 -updatePathRecursively(readName=r261DFRAAXX100204:2:47:8841:7694, locInSeq: 68 / 75, locInNode: 23 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:2:47:8841:7694) -AGTCCACC 68 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGTCCACC 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 31 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:47:8841:7694 with length: 76 and base [76] ends at position [31] within node: 549 totaling 0 mismatches. -r261DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 -Done with exploring paths from vertex: 981 -Paths and scores found are: - explored path: [549] w/ mm: 0 - AND best selected was: [549] w/ mm: 0 -r261DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 -Done with exploring paths from vertex: 451 -Paths and scores found are: - explored path: [981, 549] w/ mm: 0 - AND best selected was: [981, 549] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:2:47:8841:7694 is [451, 981, 549] with total mm: 0 -Read r261DFRAAXX100204:2:47:8841:7694 seq AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:44] [981,nodeEnd:47,readEnd:68] [549,nodeEnd:31,readEnd:76] , trimmed to: [451, 981, 549] -Threaded Read as: r261DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] -ReadPath@Init: r261DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] - mapped read [41]Read: >r261DFRAAXX100204:2:59:18912:18239/1 0 485 51 536 CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC - -Read: r261DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC -after extracting substring: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC -findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT -trying to start the mapping to node 451 at position: 34 - - -Threading read: r261DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:59:18912:18239 sequence is: -CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC -updatePathRecursively(readName=r261DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 34 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:59:18912:18239) -CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 34 -zipper alignment mm: 0 -alignment divergence up to seq pos 63 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 97 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:59:18912:18239 base [63] ends at position [97] within node: 451 totaling 0 mismatches. --reached end of vertex: 451, exploring next vertices for continued path extension: [981] -Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] -Exploring extension from node: 451 to node: 981 -updatePathRecursively(readName=r261DFRAAXX100204:2:59:18912:18239, locInSeq: 63 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:59:18912:18239) -GAGCACTCTGAAC 63 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -GAGCACTCTGAAC 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 36 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [36] within node: 981 totaling 0 mismatches. -r261DFRAAXX100204:2:59:18912:18239 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 -Done with exploring paths from vertex: 451 -Paths and scores found are: - explored path: [981] w/ mm: 0 - AND best selected was: [981] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:2:59:18912:18239 is [451, 981] with total mm: 0 -Read r261DFRAAXX100204:2:59:18912:18239 seq CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:63] [981,nodeEnd:36,readEnd:76] , trimmed to: [451, 981] -Threaded Read as: r261DFRAAXX100204:2:59:18912:18239 : [451, 981] -ReadPath@Init: r261DFRAAXX100204:2:59:18912:18239 : [451, 981] - mapped read [42]Read: >r261DFRAAXX100204:2:59:18912:18239/2 0 612 51 663 AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC - -Read: r261DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC -after extracting substring: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 63 - - -Threading read: r261DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:59:18912:18239 sequence is: -AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC -updatePathRecursively(readName=r261DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 63 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:2:59:18912:18239) -AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 63 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 139 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [139] within node: 549 totaling 0 mismatches. -FINAL BEST PATH for r261DFRAAXX100204:2:59:18912:18239 is [549] with total mm: 0 -Read r261DFRAAXX100204:2:59:18912:18239 seq AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:139,readEnd:76] , trimmed to: [549] -Threaded Read as: r261DFRAAXX100204:2:59:18912:18239 : [549] -ReadPath@Init: r261DFRAAXX100204:2:59:18912:18239 : [549] - mapped read [43]Read: >r261DFRAAXX100204:2:61:13619:6070/2 0 786 51 741 GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC - -Read: r261DFRAAXX100204:2:61:13619:6070 has start: 0, end: 75 and sequence: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC -after extracting substring: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC -findPathInGraph: V:786, with seq: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 786 at position: 0 - - -Threading read: r261DFRAAXX100204:2:61:13619:6070, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:61:13619:6070 sequence is: -GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC -updatePathRecursively(readName=r261DFRAAXX100204:2:61:13619:6070, locInSeq: 0 / 75, locInNode: 0 / 49, totalNumMm: 0 - -trying to continue the mapping to node GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) --ALIGNING READ SEQ (r261DFRAAXX100204:2:61:13619:6070) -GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 -To VERTEX (GCTAGGGGAA...GGGAGCCACC:W1(V786_D0)) SEQ: -GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 -zipper alignment mm: 0 -alignment divergence up to seq pos 50 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 50 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:61:13619:6070 base [50] ends at position [50] within node: 786 totaling 0 mismatches. --reached end of vertex: 786, exploring next vertices for continued path extension: [717] -Pursuing extension from : GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] -Exploring extension from node: 786 to node: 717 -updatePathRecursively(readName=r261DFRAAXX100204:2:61:13619:6070, locInSeq: 50 / 75, locInNode: 23 / 64, totalNumMm: 0 - -trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:61:13619:6070) -AGCCACAGGTACCTGATGGAAATGCC 50 -To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: -AGCCACAGGTACCTGATGGAAATGCC 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 49 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:61:13619:6070 with length: 76 and base [76] ends at position [49] within node: 717 totaling 0 mismatches. -r261DFRAAXX100204:2:61:13619:6070 best path so far from vertex: 786 to : 717 = [717], with total mm: 0 -Done with exploring paths from vertex: 786 -Paths and scores found are: - explored path: [717] w/ mm: 0 - AND best selected was: [717] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:2:61:13619:6070 is [786, 717] with total mm: 0 -Read r261DFRAAXX100204:2:61:13619:6070 seq GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [786, 717] positions: [786,nodeEnd:50,readEnd:50] [717,nodeEnd:49,readEnd:76] , trimmed to: [786, 717] -Threaded Read as: r261DFRAAXX100204:2:61:13619:6070 : [786, 717] -ReadPath@Init: r261DFRAAXX100204:2:61:13619:6070 : [786, 717] - mapped read [44]Read: >r261DFRAAXX100204:2:64:15138:21125/1 0 706 51 757 GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA - -Read: r261DFRAAXX100204:2:64:15138:21125 has start: 0, end: 75 and sequence: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA -after extracting substring: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 157 - - -Threading read: r261DFRAAXX100204:2:64:15138:21125, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:64:15138:21125 sequence is: -GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA -updatePathRecursively(readName=r261DFRAAXX100204:2:64:15138:21125, locInSeq: 0 / 75, locInNode: 157 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:2:64:15138:21125) -GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 157 -zipper alignment mm: 0 -alignment divergence up to seq pos 34 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 191 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:64:15138:21125 base [34] ends at position [191] within node: 549 totaling 0 mismatches. --reached end of vertex: 549, exploring next vertices for continued path extension: [717] -Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] -Exploring extension from node: 549 to node: 717 -updatePathRecursively(readName=r261DFRAAXX100204:2:64:15138:21125, locInSeq: 34 / 75, locInNode: 23 / 64, totalNumMm: 0 - -trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:64:15138:21125) -AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 34 -To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: -AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 65 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:64:15138:21125 with length: 76 and base [76] ends at position [65] within node: 717 totaling 0 mismatches. -r261DFRAAXX100204:2:64:15138:21125 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 -Done with exploring paths from vertex: 549 -Paths and scores found are: - explored path: [717] w/ mm: 0 - AND best selected was: [717] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:2:64:15138:21125 is [549, 717] with total mm: 0 -Read r261DFRAAXX100204:2:64:15138:21125 seq GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:34] [717,nodeEnd:65,readEnd:76] , trimmed to: [549, 717] -Threaded Read as: r261DFRAAXX100204:2:64:15138:21125 : [549, 717] -ReadPath@Init: r261DFRAAXX100204:2:64:15138:21125 : [549, 717] - mapped read [45]Read: >r261DFRAAXX100204:2:75:16853:12097/1 0 507 51 558 GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC - -Read: r261DFRAAXX100204:2:75:16853:12097 has start: 0, end: 75 and sequence: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC -after extracting substring: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC -findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT -trying to start the mapping to node 451 at position: 56 - - -Threading read: r261DFRAAXX100204:2:75:16853:12097, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:75:16853:12097 sequence is: -GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC -updatePathRecursively(readName=r261DFRAAXX100204:2:75:16853:12097, locInSeq: 0 / 75, locInNode: 56 / 96, totalNumMm: 0 - -trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:75:16853:12097) -GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 -To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: -GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 56 -zipper alignment mm: 0 -alignment divergence up to seq pos 41 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 97 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:75:16853:12097 base [41] ends at position [97] within node: 451 totaling 0 mismatches. --reached end of vertex: 451, exploring next vertices for continued path extension: [981] -Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] -Exploring extension from node: 451 to node: 981 -updatePathRecursively(readName=r261DFRAAXX100204:2:75:16853:12097, locInSeq: 41 / 75, locInNode: 23 / 46, totalNumMm: 0 - -trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:75:16853:12097) -GAGCACTCTGAACCCTGTGAGGCA 41 -To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: -GAGCACTCTGAACCCTGTGAGGCA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 65 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 47 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:75:16853:12097 base [65] ends at position [47] within node: 981 totaling 0 mismatches. --reached end of vertex: 981, exploring next vertices for continued path extension: [549] -Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] -Exploring extension from node: 981 to node: 549 -updatePathRecursively(readName=r261DFRAAXX100204:2:75:16853:12097, locInSeq: 65 / 75, locInNode: 23 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:2:75:16853:12097) -AGTCCACCACC 65 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -AGTCCACCACC 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 34 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:75:16853:12097 with length: 76 and base [76] ends at position [34] within node: 549 totaling 0 mismatches. -r261DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 -Done with exploring paths from vertex: 981 -Paths and scores found are: - explored path: [549] w/ mm: 0 - AND best selected was: [549] w/ mm: 0 -r261DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 -Done with exploring paths from vertex: 451 -Paths and scores found are: - explored path: [981, 549] w/ mm: 0 - AND best selected was: [981, 549] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:2:75:16853:12097 is [451, 981, 549] with total mm: 0 -Read r261DFRAAXX100204:2:75:16853:12097 seq GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:41] [981,nodeEnd:47,readEnd:65] [549,nodeEnd:34,readEnd:76] , trimmed to: [451, 981, 549] -Threaded Read as: r261DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] -ReadPath@Init: r261DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] - mapped read [46]Read: >r261DFRAAXX100204:2:90:12533:11254/1 0 696 51 747 GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA - -Read: r261DFRAAXX100204:2:90:12533:11254 has start: 0, end: 75 and sequence: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA -after extracting substring: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA -findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC -trying to start the mapping to node 549 at position: 147 - - -Threading read: r261DFRAAXX100204:2:90:12533:11254, length: 76, allowing for 4 max mismatches. -Read: r261DFRAAXX100204:2:90:12533:11254 sequence is: -GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA -updatePathRecursively(readName=r261DFRAAXX100204:2:90:12533:11254, locInSeq: 0 / 75, locInNode: 147 / 190, totalNumMm: 0 - -trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) --ALIGNING READ SEQ (r261DFRAAXX100204:2:90:12533:11254) -GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 -To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: -GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 147 -zipper alignment mm: 0 -alignment divergence up to seq pos 44 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 191 = 0.0 -Reached end of node sequence. Readr261DFRAAXX100204:2:90:12533:11254 base [44] ends at position [191] within node: 549 totaling 0 mismatches. --reached end of vertex: 549, exploring next vertices for continued path extension: [717] -Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] -Exploring extension from node: 549 to node: 717 -updatePathRecursively(readName=r261DFRAAXX100204:2:90:12533:11254, locInSeq: 44 / 75, locInNode: 23 / 64, totalNumMm: 0 - -trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) --ALIGNING READ SEQ (r261DFRAAXX100204:2:90:12533:11254) -AGCCACAGGTACCTGATGGAAATGCCGGCTCA 44 -To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: -AGCCACAGGTACCTGATGGAAATGCCGGCTCA 23 -zipper alignment mm: 0 -alignment divergence up to seq pos 76 = mm: 0, div:0.0 -local vertex alignment divergence = 0 / 55 = 0.0 -Reached end of read sequence. Readr261DFRAAXX100204:2:90:12533:11254 with length: 76 and base [76] ends at position [55] within node: 717 totaling 0 mismatches. -r261DFRAAXX100204:2:90:12533:11254 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 -Done with exploring paths from vertex: 549 -Paths and scores found are: - explored path: [717] w/ mm: 0 - AND best selected was: [717] w/ mm: 0 -FINAL BEST PATH for r261DFRAAXX100204:2:90:12533:11254 is [549, 717] with total mm: 0 -Read r261DFRAAXX100204:2:90:12533:11254 seq GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:44] [717,nodeEnd:55,readEnd:76] , trimmed to: [549, 717] -Threaded Read as: r261DFRAAXX100204:2:90:12533:11254 : [549, 717] -ReadPath@Init: r261DFRAAXX100204:2:90:12533:11254 : [549, 717] -number of reads threaded = 46 (from total of 46) which came from 42 pairs -Read name to pairing info: r261DFRAAXX100204:2:47:8841:7694 => [451, 981, 549] -Read name to pairing info: r261DFRAAXX100204:1:67:9991:2232 => [380, 982, 440, 451] -Read name to pairing info: 61DFRAAXX100204:2:27:5714:7307 => [549] -Read name to pairing info: r261DFRAAXX100204:2:27:5714:7307 => [549] -Read name to pairing info: 61DFRAAXX100204:1:70:1041:1268 => [549] -Read name to pairing info: 61DFRAAXX100204:1:113:7690:4285 => [981, 549] -Read name to pairing info: 61DFRAAXX100204:1:67:9991:2232 => [380, 982, 440, 451] -Read name to pairing info: r261DFRAAXX100204:1:113:7690:4285 => [981, 549] -Read name to pairing info: 61DFRAAXX100204:2:43:2649:2845 => [945, 451] -Read name to pairing info: r261DFRAAXX100204:1:112:16960:13532 => [549] -Read name to pairing info: r261DFRAAXX100204:2:13:7749:17373 => [380, 982, 440, 451] -Read name to pairing info: 61DFRAAXX100204:2:90:12533:11254 => [549, 717] -Read name to pairing info: 61DFRAAXX100204:1:20:5538:6890 => [549] -Read name to pairing info: r261DFRAAXX100204:2:61:13619:6070 => [786, 717] -Read name to pairing info: r261DFRAAXX100204:1:20:5538:6890 => [549] -Read name to pairing info: 61DFRAAXX100204:1:112:16960:13532 => [549] -Read name to pairing info: 61DFRAAXX100204:2:61:13619:6070 => [786, 717] -Read name to pairing info: r261DFRAAXX100204:2:34:11574:10433 => [982, 440, 451] -Read name to pairing info: 61DFRAAXX100204:2:13:7749:17373 => [380, 982, 440, 451] -Read name to pairing info: r261DFRAAXX100204:2:90:12533:11254 => [549, 717] -Read name to pairing info: 61DFRAAXX100204:2:47:8841:7694 => [451, 981, 549] -Read name to pairing info: 61DFRAAXX100204:1:115:8211:5116 => [451, 981] -Read name to pairing info: 61DFRAAXX100204:2:34:11574:10433 => [982, 440, 451] -Read name to pairing info: r261DFRAAXX100204:1:85:13720:15251 => [549] -Read name to pairing info: r261DFRAAXX100204:1:39:8793:18196 => [380, 982][451, 981, 549] -Read name to pairing info: 61DFRAAXX100204:2:33:12784:13782 => [549] -Read name to pairing info: 61DFRAAXX100204:2:47:12270:6103 => [549] -Read name to pairing info: 61DFRAAXX100204:1:39:8793:18196 => [380, 982][451, 981, 549] -Read name to pairing info: r261DFRAAXX100204:2:75:16853:12097 => [451, 981, 549] -Read name to pairing info: r261DFRAAXX100204:2:59:18912:18239 => [451, 981][549] -Read name to pairing info: 61DFRAAXX100204:1:85:13720:15251 => [549] -Read name to pairing info: r261DFRAAXX100204:2:47:12270:6103 => [549] -Read name to pairing info: r261DFRAAXX100204:2:33:12784:13782 => [549] -Read name to pairing info: r261DFRAAXX100204:2:64:15138:21125 => [549, 717] -Read name to pairing info: r261DFRAAXX100204:2:18:10392:2962 => [380, 982, 440, 451] -Read name to pairing info: 61DFRAAXX100204:2:59:18912:18239 => [451, 981][549] -Read name to pairing info: 61DFRAAXX100204:2:18:10392:2962 => [380, 982, 440, 451] -Read name to pairing info: 61DFRAAXX100204:2:64:15138:21125 => [549, 717] -Read name to pairing info: r261DFRAAXX100204:2:43:2649:2845 => [945, 451] -Read name to pairing info: r261DFRAAXX100204:1:115:8211:5116 => [451, 981] -Read name to pairing info: 61DFRAAXX100204:2:75:16853:12097 => [451, 981, 549] -Read name to pairing info: r261DFRAAXX100204:1:70:1041:1268 => [549] - -SECTION -================== -Pairing up the reads into PairPaths -=========================== - -we have 1 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] -we have 1 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] -we have 1 reads supporting the path: PairPath [_paths=[[549], []]] -we have 2 reads supporting the path: PairPath [_paths=[[549], []]] -we have 3 reads supporting the path: PairPath [_paths=[[549], []]] -we have 1 reads supporting the path: PairPath [_paths=[[981, 549], []]] -we have 2 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] -we have 2 reads supporting the path: PairPath [_paths=[[981, 549], []]] -we have 1 reads supporting the path: PairPath [_paths=[[945, 451], []]] -we have 4 reads supporting the path: PairPath [_paths=[[549], []]] -we have 3 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] -we have 1 reads supporting the path: PairPath [_paths=[[549, 717], []]] -we have 5 reads supporting the path: PairPath [_paths=[[549], []]] -we have 1 reads supporting the path: PairPath [_paths=[[786, 717], []]] -we have 6 reads supporting the path: PairPath [_paths=[[549], []]] -we have 7 reads supporting the path: PairPath [_paths=[[549], []]] -we have 2 reads supporting the path: PairPath [_paths=[[786, 717], []]] -we have 1 reads supporting the path: PairPath [_paths=[[982, 440, 451], []]] -we have 4 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] -we have 2 reads supporting the path: PairPath [_paths=[[549, 717], []]] -we have 2 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] -we have 1 reads supporting the path: PairPath [_paths=[[451, 981], []]] -we have 2 reads supporting the path: PairPath [_paths=[[982, 440, 451], []]] -we have 8 reads supporting the path: PairPath [_paths=[[549], []]] -we have 1 reads supporting the path: PairPath [_paths=[[380, 982], [451, 981, 549]]] -we have 9 reads supporting the path: PairPath [_paths=[[549], []]] -we have 10 reads supporting the path: PairPath [_paths=[[549], []]] -we have 2 reads supporting the path: PairPath [_paths=[[380, 982], [451, 981, 549]]] -we have 3 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] -we have 1 reads supporting the path: PairPath [_paths=[[451, 981], [549]]] -we have 11 reads supporting the path: PairPath [_paths=[[549], []]] -we have 12 reads supporting the path: PairPath [_paths=[[549], []]] -we have 13 reads supporting the path: PairPath [_paths=[[549], []]] -we have 3 reads supporting the path: PairPath [_paths=[[549, 717], []]] -we have 5 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] -we have 2 reads supporting the path: PairPath [_paths=[[451, 981], [549]]] -we have 6 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] -we have 4 reads supporting the path: PairPath [_paths=[[549, 717], []]] -we have 2 reads supporting the path: PairPath [_paths=[[945, 451], []]] -we have 2 reads supporting the path: PairPath [_paths=[[451, 981], []]] -we have 4 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] -we have 14 reads supporting the path: PairPath [_paths=[[549], []]] -number of reads used = 42 -## Read PathPair results: 38 singletons, num pairs: 4, num pairs discarded: 0 -Printing Pair Paths Before DAG Overlap Layout ------------------ -Start Vertex:945 -PairPaths@Init: PairPath [_paths=[[945, 451], []]]=2 -Start Vertex:786 -PairPaths@Init: PairPath [_paths=[[786, 717], []]]=2 -Start Vertex:451 -PairPaths@Init: PairPath [_paths=[[451, 981, 549], []]]=4 -PairPaths@Init: PairPath [_paths=[[451, 981], [549]]]=2 -PairPaths@Init: PairPath [_paths=[[451, 981], []]]=2 -Start Vertex:549 -PairPaths@Init: PairPath [_paths=[[549, 717], []]]=4 -PairPaths@Init: PairPath [_paths=[[549], []]]=14 -Start Vertex:981 -PairPaths@Init: PairPath [_paths=[[981, 549], []]]=2 -Start Vertex:982 -PairPaths@Init: PairPath [_paths=[[982, 440, 451], []]]=2 -Start Vertex:380 -PairPaths@Init: PairPath [_paths=[[380, 982], [451, 981, 549]]]=2 -PairPaths@Init: PairPath [_paths=[[380, 982, 440, 451], []]]=6 -SECTION -======== Create DAG from Overlap Layout ============ - - -Noncontained paths: [[380, 982, 440, 451], [451, 981, 549], [786, 717], [549, 717], [945, 451]] -Node[451] has repeat count: 3 -Node[549] has repeat count: 2 -Node[717] has repeat count: 2 -Node[945] has repeat count: 1 -Node[786] has repeat count: 1 -Node[981] has repeat count: 1 -Node[982] has repeat count: 1 -Node[440] has repeat count: 1 -Node[380] has repeat count: 1 -path PN1::[380, 982, 440, 451] extends no path -PathNode Overlap Detected: [overlap: 1] PN1::[380, 982, 440, 451] extended by PN2::[451, 981, 549] -PathNode Overlap Detected: [overlap: 1] PN5::[945, 451] extended by PN2::[451, 981, 549] -extension of: PN1::[380, 982, 440, 451] by PN2::[451, 981, 549] has 1 terminal matches. -extension of: PN5::[945, 451] by PN2::[451, 981, 549] has 1 terminal matches. -path PN3::[786, 717] extends no path -PathNode Overlap Detected: [overlap: 1] PN2::[451, 981, 549] extended by PN4::[549, 717] -extension of: PN2::[451, 981, 549] by PN4::[549, 717] has 1 terminal matches. -path PN5::[945, 451] extends no path -PathNodeDescription: PN4::[549, 717] -PathNodeDescription: PN2::[451, 981, 549] -PathNodeDescription: PN5::[945, 451] -PathNodeDescription: PN1::[380, 982, 440, 451] -PathNodeDescription: PN3::[786, 717] -// Breaking cycles in Path Overlap Graph (POG), Round: 1 -SECTION -======== Convert Path-DAG to SeqVertex-DAG ============ - - -prep_for_DAG_collapse: PN4 CurrVert:[983, 984], OrigVert:[549, 717] -prep_for_DAG_collapse: PN2 CurrVert:[985, 986, 987], OrigVert:[451, 981, 549] -prep_for_DAG_collapse: PN5 CurrVert:[988, 989], OrigVert:[945, 451] -prep_for_DAG_collapse: PN1 CurrVert:[990, 991, 992, 993], OrigVert:[380, 982, 440, 451] -prep_for_DAG_collapse: PN3 CurrVert:[994, 995], OrigVert:[786, 717] - -DFS_path_to_graph: targeting: PN5::[945, 451] - -DFS_path_to_graph: targeting: PN2::[451, 981, 549] - -DFS_path_to_graph: targeting: PN4::[549, 717] - -DFS_path_to_graph: targeting: PN1::[380, 982, 440, 451] - -DFS_path_to_graph: targeting: PN3::[786, 717] - - -## Round: 1 Zipping up. -## zip_up() -attempt_zip_merge_SeqVertices([AGCACTCTGA...GGGAGCCACC:W6(V983_549_D1), AGTCCACCAC...GGGAGCCACC:W6(V987_549_D11)]) - parent_depths[10], child_depths: [12, 12] -UpZipMerging nodes: [AGCACTCTGA...GGGAGCCACC:W6(V983_549_D1), AGCACTCTGA...GGGAGCCACC:W6(V987_549_D11)] to AGTCCACCAC...GGGAGCCACC:W6(V996_549_D1) -Zip up merged: 2 nodes. - - -## Round: 2 Zipping up. -## zip_up() -attempt_zip_merge_SeqVertices([GTGTCTTAAC...GAAGCTCCCT:W6(V993_451_D8), GAAGAAATCT...GAAGCTCCCT:W6(V985_451_D1), GTGTCTTAAC...GAAGCTCCCT:W6(V989_451_D5)]) - parent_depths[7, 2], child_depths: [9, 9, 9] -UpZipMerging nodes: [GAAGAAATCT...GAAGCTCCCT:W6(V993_451_D8), GAAGAAATCT...GAAGCTCCCT:W6(V985_451_D1), GAAGAAATCT...GAAGCTCCCT:W6(V989_451_D5)] to GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) -Zip up merged: 3 nodes. - - -## Round: 3 Zipping up. -## zip_up() -Zip up merged: 0 nodes. - - -## Round: 4 Zipping down. -Zip down merged: 0 nodes. - - -## Round: 5 Zipping up. -## zip_up() -Zip up merged: 0 nodes. - - -## Round: 6 Zipping down. -Zip down merged: 0 nodes. -destroy_unzipped_duplicates_above() -Old_to_new_vertex_id_mapping: 994 => 994 (stays same) -Old_to_new_vertex_id_mapping: 988 => 988 (stays same) -Old_to_new_vertex_id_mapping: 990 => 990 (stays same) -Old_to_new_vertex_id_mapping: 995 => 995 (stays same) -Old_to_new_vertex_id_mapping: 991 => 991 (stays same) -Old_to_new_vertex_id_mapping: 992 => 992 (stays same) -Old_to_new_vertex_id_mapping: 993 => 997 -Old_to_new_vertex_id_mapping: 985 => 997 -Old_to_new_vertex_id_mapping: 989 => 997 -Old_to_new_vertex_id_mapping: 986 => 986 (stays same) -Old_to_new_vertex_id_mapping: 983 => 996 -Old_to_new_vertex_id_mapping: 987 => 996 -Old_to_new_vertex_id_mapping: 984 => 984 (stays same) -Old-to-new-path mappings: {[945, 451]=[988, 997], [451, 981, 549]=[997, 986, 996], [549, 717]=[996, 984], [786, 717]=[994, 995], [380, 982, 440, 451]=[990, 991, 992, 997]} -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[945, 451], []]] has support: 2 -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[549, 717], []]] has support: 4 -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[982, 440, 451], []]] has support: 2 -update_PairPaths_using_overlapDAG_refined_paths, p1: [982, 440, 451] mapped to: [[991, 992, 997]] -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[451, 981, 549], []]] has support: 4 -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[451, 981], [549]]] has support: 2 -update_PairPaths_using_overlapDAG_refined_paths, p1: [451, 981] mapped to: [[997, 986]] -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[786, 717], []]] has support: 2 -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[451, 981], []]] has support: 2 -update_PairPaths_using_overlapDAG_refined_paths, p1: [451, 981] mapped to: [[997, 986]] -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[380, 982], [451, 981, 549]]] has support: 2 -update_PairPaths_using_overlapDAG_refined_paths, p1: [380, 982] mapped to: [[990, 991]] -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[549], []]] has support: 14 -update_PairPaths_using_overlapDAG_refined_paths, p1: [549] mapped to: [[996]] -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[981, 549], []]] has support: 2 -update_PairPaths_using_overlapDAG_refined_paths, p1: [981, 549] mapped to: [[986, 996]] -update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[380, 982, 440, 451], []]] has support: 6 -Printing Pair Paths ------------------ -Start Vertex:994 -PairPaths@PostOverlapLayout: PairPath [_paths=[[994, 995], []]]=2 -Start Vertex:996 -PairPaths@PostOverlapLayout: PairPath [_paths=[[996, 984], []]]=4 -PairPaths@PostOverlapLayout: PairPath [_paths=[[996], []]]=14 -Start Vertex:997 -PairPaths@PostOverlapLayout: PairPath [_paths=[[997, 986, 996], []]]=4 -PairPaths@PostOverlapLayout: PairPath [_paths=[[997, 986], [996]]]=2 -PairPaths@PostOverlapLayout: PairPath [_paths=[[997, 986], []]]=2 -Start Vertex:986 -PairPaths@PostOverlapLayout: PairPath [_paths=[[986, 996], []]]=2 -Start Vertex:988 -PairPaths@PostOverlapLayout: PairPath [_paths=[[988, 997], []]]=2 -Start Vertex:990 -PairPaths@PostOverlapLayout: PairPath [_paths=[[990, 991], [997, 986, 996]]]=2 -PairPaths@PostOverlapLayout: PairPath [_paths=[[990, 991, 992, 997], []]]=6 -Start Vertex:991 -PairPaths@PostOverlapLayout: PairPath [_paths=[[991, 992, 997], []]]=2 -SECTION -======= Reorganize Read Pairings ========= - - -NODE_DESCR: CTTTCCAAGTA:W8(V992_440_D2) Preds: [CCTCATCAGCAAGAAGAAATCTTT:W7(V991_982_D1) ] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) ] -NODE_DESCR: GCTAGGGGAA...GGGAGCCACC:W1(V994_786_D0) Preds: [] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V995_717_D1) ] -NODE_DESCR: AGCCACAGGT...CTTCCTGTGA:W5(V995_717_D1) Preds: [GCTAGGGGAA...GGGAGCCACC:W1(V994_786_D0) ] Succ: [] -NODE_DESCR: AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3) Preds: [GAGCACTCTGAACCCTGTGAGGCA:W6(V986_981_D2) ] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V984_717_D4) ] -NODE_DESCR: GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) Preds: [CTTTCCAAGTA:W8(V992_440_D2) AGAATACAAA...TTTCCAAGTA:W1(V988_945_D0) ] Succ: [GAGCACTCTGAACCCTGTGAGGCA:W6(V986_981_D2) ] -NODE_DESCR: AGCCACAGGT...CTTCCTGTGA:W5(V984_717_D4) Preds: [AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3) ] Succ: [] -NODE_DESCR: GAGCACTCTGAACCCTGTGAGGCA:W6(V986_981_D2) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3) ] -NODE_DESCR: AGAATACAAA...TTTCCAAGTA:W1(V988_945_D0) Preds: [] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) ] -NODE_DESCR: GGCCACACGA...CTTCCTCAAG:W2(V990_380_D0) Preds: [] Succ: [CCTCATCAGCAAGAAGAAATCTTT:W7(V991_982_D1) ] -NODE_DESCR: CCTCATCAGCAAGAAGAAATCTTT:W7(V991_982_D1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V990_380_D0) ] Succ: [CTTTCCAAGTA:W8(V992_440_D2) ] -we have 2 reads supporting the path: PairPath [_paths=[[994, 995], []]] -we have 4 reads supporting the path: PairPath [_paths=[[996, 984], []]] -we have 14 reads supporting the path: PairPath [_paths=[[996], []]] -we have 4 reads supporting the path: PairPath [_paths=[[997, 986, 996], []]] -combinePaths: [997, 986], [996] -Examining imputation of path connecting pairpath: PairPath [_paths=[[997, 986], [996]]] nodes 986 to 996 -Could Impute path connectingPairPath [_paths=[[997, 986], [996]]] containing intervening nodes: [] -we have 6 reads supporting the path: PairPath [_paths=[[997, 986, 996], []]] -OK pp update to new DAG: PairPath [_paths=[[997, 986], [996]]] => PairPath [_paths=[[997, 986, 996], []]] -we have 2 reads supporting the path: PairPath [_paths=[[997, 986], []]] -we have 2 reads supporting the path: PairPath [_paths=[[986, 996], []]] -we have 2 reads supporting the path: PairPath [_paths=[[988, 997], []]] -combinePaths: [990, 991], [997, 986, 996] -Examining imputation of path connecting pairpath: PairPath [_paths=[[990, 991], [997, 986, 996]]] nodes 991 to 997 -Could Impute path connectingPairPath [_paths=[[990, 991], [997, 986, 996]]] containing intervening nodes: [992] -we have 2 reads supporting the path: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -OK pp update to new DAG: PairPath [_paths=[[990, 991], [997, 986, 996]]] => PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -we have 6 reads supporting the path: PairPath [_paths=[[990, 991, 992, 997], []]] -we have 2 reads supporting the path: PairPath [_paths=[[991, 992, 997], []]] -Start Vertex:994 -PairPaths@AfterPairReorganization: PairPath [_paths=[[994, 995], []]]=2 -Start Vertex:996 -PairPaths@AfterPairReorganization: PairPath [_paths=[[996, 984], []]]=4 -PairPaths@AfterPairReorganization: PairPath [_paths=[[996], []]]=14 -Start Vertex:997 -PairPaths@AfterPairReorganization: PairPath [_paths=[[997, 986, 996], []]]=6 -PairPaths@AfterPairReorganization: PairPath [_paths=[[997, 986], []]]=2 -Start Vertex:986 -PairPaths@AfterPairReorganization: PairPath [_paths=[[986, 996], []]]=2 -Start Vertex:988 -PairPaths@AfterPairReorganization: PairPath [_paths=[[988, 997], []]]=2 -Start Vertex:990 -PairPaths@AfterPairReorganization: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]]=2 -PairPaths@AfterPairReorganization: PairPath [_paths=[[990, 991, 992, 997], []]]=6 -Start Vertex:991 -PairPaths@AfterPairReorganization: PairPath [_paths=[[991, 992, 997], []]]=2 - -ComponentDivision: 0 contains the following vertices: -node_id: 992 -node_id: 996 -node_id: 997 -node_id: 984 -node_id: 986 -node_id: 988 -node_id: 990 -node_id: 991 - -ComponentDivision: 1 contains the following vertices: -node_id: 994 -node_id: 995 -total number of components = 2 -Searching for kmer set: CCCAGCCCCGTGGAGGGAGCCACC -> CCAGCCCCGTGGAGGGAGCCACCA -Searching for kmer set: AGGAGCAGAGTTAGGAAGCTCCCT -> GGAGCAGAGTTAGGAAGCTCCCTG -Searching for kmer set: TGGCTACAAACAGACTTCCTCAAG -> GGCTACAAACAGACTTCCTCAAGC -Searching for kmer set: GAGCACTCTGAACCCTGTGAGGCA -> AGCACTCTGAACCCTGTGAGGCAA -Searching for kmer set: GCCAGCCCCGTGGAGGGAGCCACC -> CCAGCCCCGTGGAGGGAGCCACCA -Searching for kmer set: GGAAGAAATCTTTCTTTCCAAGTA -> GAAGAAATCTTTCTTTCCAAGTAG -Searching for kmer set: CCTCATCAGCAAGAAGAAATCTTT -> CTCATCAGCAAGAAGAAATCTTTC -Searching for kmer set: AGAAGAAATCTTTCTTTCCAAGTA -> GAAGAAATCTTTCTTTCCAAGTAG - -SECTION -============= Begin Assembly =============== - - -Assembling subcomponent 0 -Subcomponent: 0, adding pairpath: PairPath [_paths=[[996, 984], []]] -Subcomponent: 0, adding pairpath: PairPath [_paths=[[996], []]] -Subcomponent: 0, adding pairpath: PairPath [_paths=[[997, 986, 996], []]] -Subcomponent: 0, adding pairpath: PairPath [_paths=[[997, 986], []]] -Subcomponent: 0, adding pairpath: PairPath [_paths=[[986, 996], []]] -Subcomponent: 0, adding pairpath: PairPath [_paths=[[988, 997], []]] -Subcomponent: 0, adding pairpath: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -Subcomponent: 0, adding pairpath: PairPath [_paths=[[990, 991, 992, 997], []]] -Subcomponent: 0, adding pairpath: PairPath [_paths=[[991, 992, 997], []]] -#### Component Read Summary BEFORE PairPath-per-node Reduction -***** PairPath Counts ***** -componentReadHash, start node: 996 has size: 2 -Node: 996 has 2 pairpaths stored: - PairPath [_paths=[[996], []]] has read support: 14 - PairPath [_paths=[[996, 984], []]] has read support: 4 - -componentReadHash, start node: 997 has size: 2 -Node: 997 has 2 pairpaths stored: - PairPath [_paths=[[997, 986, 996], []]] has read support: 6 - PairPath [_paths=[[997, 986], []]] has read support: 2 - -componentReadHash, start node: 986 has size: 1 -Node: 986 has 1 pairpaths stored: - PairPath [_paths=[[986, 996], []]] has read support: 2 - -componentReadHash, start node: 988 has size: 1 -Node: 988 has 1 pairpaths stored: - PairPath [_paths=[[988, 997], []]] has read support: 2 - -componentReadHash, start node: 990 has size: 2 -Node: 990 has 2 pairpaths stored: - PairPath [_paths=[[990, 991, 992, 997], []]] has read support: 6 - PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] has read support: 2 - -componentReadHash, start node: 991 has size: 1 -Node: 991 has 1 pairpaths stored: - PairPath [_paths=[[991, 992, 997], []]] has read support: 2 - -## Total number of pairpaths: 9 -#### Component Read Summary AFTER PairPath-per-node Reduction -***** PairPath Counts ***** -componentReadHash, start node: 996 has size: 2 -Node: 996 has 2 pairpaths stored: - PairPath [_paths=[[996], []]] has read support: 14 - PairPath [_paths=[[996, 984], []]] has read support: 4 - -componentReadHash, start node: 997 has size: 2 -Node: 997 has 2 pairpaths stored: - PairPath [_paths=[[997, 986, 996], []]] has read support: 6 - PairPath [_paths=[[997, 986], []]] has read support: 2 - -componentReadHash, start node: 986 has size: 1 -Node: 986 has 1 pairpaths stored: - PairPath [_paths=[[986, 996], []]] has read support: 2 - -componentReadHash, start node: 988 has size: 1 -Node: 988 has 1 pairpaths stored: - PairPath [_paths=[[988, 997], []]] has read support: 2 - -componentReadHash, start node: 990 has size: 2 -Node: 990 has 2 pairpaths stored: - PairPath [_paths=[[990, 991, 992, 997], []]] has read support: 6 - PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] has read support: 2 - -componentReadHash, start node: 991 has size: 1 -Node: 991 has 1 pairpaths stored: - PairPath [_paths=[[991, 992, 997], []]] has read support: 2 - -## Total number of pairpaths: 9 -### Extracting triplets from reads. -Setting initial triplet adjacency_path for central node: 986 => [997, 986, 996] -Setting initial triplet adjacency_path for central node: 991 => [990, 991, 992] -Setting initial triplet adjacency_path for central node: 992 => [991, 992, 997] -Setting initial triplet adjacency_path for central node: 997 => [992, 997, 986] -triplet adjacency_path of node: 986 => [997, 986, 996] already captured. -triplet adjacency_path of node: 991 => [990, 991, 992] already captured. -triplet adjacency_path of node: 992 => [991, 992, 997] already captured. -triplet adjacency_path of node: 992 => [991, 992, 997] already captured. - -### 4 nodes have locked-in triplet paths: -Triplet locks for: 992 : [[991, 992, 997]] -Triplet locks for: 997 : [[992, 997, 986]] -Triplet locks for: 986 : [[997, 986, 996]] -Triplet locks for: 991 : [[990, 991, 992]] -### Extracting complex path prefixes from reads. --capturing path prefixes --removing prefixes that are subpaths of other prefixes -EXTENDED_TRIPLET_CAPTURED: [990, 991, 992] -EXTENDED_TRIPLET_CAPTURED: [990, 991, 992, 997, 986, 996] -EXTENDED_TRIPLET_CAPTURED: [990, 991, 992, 997] -EXTENDED_TRIPLET_CAPTURED: [991, 992, 997] -EXTENDED_TRIPLET_CAPTURED: [990, 991, 992, 997, 986] - -#### Extended triplets from reads: -Complex prefix paths for: 992 : [[990, 991, 992]] -Complex prefix paths for: 996 : [[990, 991, 992, 997, 986, 996]] -Complex prefix paths for: 997 : [[990, 991, 992, 997], [991, 992, 997]] -Complex prefix paths for: 986 : [[990, 991, 992, 997, 986]] -Adding edge from AGCCACAGGT...CTTCCTGTGA:W5(V984_717_D4) to T -Adding edge from S to GCCTCATCAG...TTTCCAAGTA:W1(V988_945_D0) -Adding edge from S to CCACATTTCT...CTTCCTCAAG:W2(V990_380_D0) - -SECTION -############### -## Starting Butterfly Assembly ## -################### - - -PairPaths to assemble: -Start Vertex:-1 -PairPaths@BflyStart: PairPath [_paths=[[-1, 990], []]]=1 -PairPaths@BflyStart: PairPath [_paths=[[-1, 988], []]]=1 -Start Vertex:996 -PairPaths@BflyStart: PairPath [_paths=[[996, 984], []]]=4 -PairPaths@BflyStart: PairPath [_paths=[[996], []]]=14 -Start Vertex:997 -PairPaths@BflyStart: PairPath [_paths=[[997, 986, 996], []]]=6 -PairPaths@BflyStart: PairPath [_paths=[[997, 986], []]]=2 -Start Vertex:984 -PairPaths@BflyStart: PairPath [_paths=[[984, -2], []]]=1 -Start Vertex:986 -PairPaths@BflyStart: PairPath [_paths=[[986, 996], []]]=2 -Start Vertex:988 -PairPaths@BflyStart: PairPath [_paths=[[988, 997], []]]=2 -Start Vertex:990 -PairPaths@BflyStart: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]]=2 -PairPaths@BflyStart: PairPath [_paths=[[990, 991, 992, 997], []]]=6 -Start Vertex:991 -PairPaths@BflyStart: PairPath [_paths=[[991, 992, 997], []]]=2 -QUEUE IS: [:W2147483647(V-1_D-1)] - - -#### getAllProbablePaths() The next node in the queue C is -1 - butterfly pct done: 1 / 8 = 12.5% pct done. -ReadsStartingAtV_START_BFLY, Node: -1 read: PairPath [_paths=[[-1, 990], []]] -ReadsStartingAtV_START_BFLY, Node: -1 read: PairPath [_paths=[[-1, 988], []]] -Exploring extension of: 1 paths that end at vertex: -1 - -== Current Paths Constructed Up To Vertex: -1 : -PathPartialReconstruction@[-1] : [-1] - -Adding the reads {PairPath [_paths=[[-1, 990], []]]=1, PairPath [_paths=[[-1, 988], []]]=1} to the path [-1] - - -################################################ -###### Exploring extension of v: -1 by successor: 988 -################################################ - - -Count of paths ending at v: -1 = 1 -path_ending_at_v: [-1] - - -# [PathCounter(988)=0 Examining potential extension of path ending at node V: -1 by successor: 988, via path=[-1] -path [-1] is too short to check for triplet support. -ReadsOfPathUntilV: PATH: [-1] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 990], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] --checking if subPath has enough read support. Exploring sub path: [-1, 988] --readsOfPathUntilV: PairPath [_paths=[[-1, 990], []]] - -checking if pp: PairPath [_paths=[[-1, 990], []]] supports extension of [-1, 988] => false -examining subPath: [-1, 988] for reinforcement by read: [[-1, 990], []] :false -the read PairPath [_paths=[[-1, 990], []]](1) does not enforce the sub-path ([-1, 988]) --readsOfPathUntilV: PairPath [_paths=[[-1, 988], []]] - -checking if pp: PairPath [_paths=[[-1, 988], []]] supports extension of [-1, 988] => true -examining subPath: [-1, 988] for reinforcement by read: [[-1, 988], []] :true -the read PairPath [_paths=[[-1, 988], []]](1) enforces the sub-path ([-1, 988]) --found: 1 reads supporting subpath. -the sub-path ([-1, 988]) has PASSED - -Successful extension of 988 to generate path [-1, 988] -updateReadsOfPath: [-1, 988] -read PairPath [_paths=[[-1, 990], []]] is not consistent with 988 -read PairPath [_paths=[[-1, 988], []]] is consistent with 988 -pct_contained_propagated: 0.0% -988 was added to the queue - - -################################################ -###### Exploring extension of v: -1 by successor: 990 -################################################ - - -Count of paths ending at v: -1 = 1 -path_ending_at_v: [-1] - - -# [PathCounter(990)=0 Examining potential extension of path ending at node V: -1 by successor: 990, via path=[-1] -path [-1] is too short to check for triplet support. -ReadsOfPathUntilV: PATH: [-1] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 990], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] --checking if subPath has enough read support. Exploring sub path: [-1, 990] --readsOfPathUntilV: PairPath [_paths=[[-1, 990], []]] - -checking if pp: PairPath [_paths=[[-1, 990], []]] supports extension of [-1, 990] => true -examining subPath: [-1, 990] for reinforcement by read: [[-1, 990], []] :true -the read PairPath [_paths=[[-1, 990], []]](1) enforces the sub-path ([-1, 990]) --found: 1 reads supporting subpath. -the sub-path ([-1, 990]) has PASSED - -Successful extension of 990 to generate path [-1, 990] -updateReadsOfPath: [-1, 990] -read PairPath [_paths=[[-1, 990], []]] is consistent with 990 -read PairPath [_paths=[[-1, 988], []]] is not consistent with 990 -pct_contained_propagated: 0.0% -990 was added to the queue -QUEUE IS: [GCCTCATCAG...TTTCCAAGTA:W1(V988_945_D0), CCACATTTCT...CTTCCTCAAG:W2(V990_380_D0)] - - -#### getAllProbablePaths() The next node in the queue C is 988 - butterfly pct done: 2 / 8 = 25.0% pct done. -ReadsStartingAtV_START_BFLY, Node: 988 read: PairPath [_paths=[[988, 997], []]] -Exploring extension of: 1 paths that end at vertex: 988 - -== Current Paths Constructed Up To Vertex: 988 : -PathPartialReconstruction@[988] : [-1, 988] - -Adding the reads {PairPath [_paths=[[988, 997], []]]=2} to the path [-1, 988] - - -################################################ -###### Exploring extension of v: 988 by successor: 997 -################################################ - - -Count of paths ending at v: 988 = 1 -path_ending_at_v: [-1, 988] - - -# [PathCounter(997)=0 Examining potential extension of path ending at node V: 988 by successor: 997, via path=[-1, 988] -path [-1, 988] is too short to check for triplet support. -ReadsOfPathUntilV: PATH: [-1, 988] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[988, 997], []]] --checking if subPath has enough read support. Exploring sub path: [988, 997] --readsOfPathUntilV: PairPath [_paths=[[-1, 988], []]] - -checking if pp: PairPath [_paths=[[-1, 988], []]] supports extension of [-1, 988, 997] => false -examining subPath: [988, 997] for reinforcement by read: [[-1, 988], []] :false -the read PairPath [_paths=[[-1, 988], []]](1) does not enforce the sub-path ([988, 997]) --readsOfPathUntilV: PairPath [_paths=[[988, 997], []]] - -checking if pp: PairPath [_paths=[[988, 997], []]] supports extension of [-1, 988, 997] => true -examining subPath: [988, 997] for reinforcement by read: [[988, 997], []] :true -the read PairPath [_paths=[[988, 997], []]](2) enforces the sub-path ([988, 997]) --found: 2 reads supporting subpath. -the sub-path ([988, 997]) has PASSED - -Successful extension of 997 to generate path [-1, 988, 997] -updateReadsOfPath: [-1, 988, 997] -read PairPath [_paths=[[988, 997], []]] is consistent with 997 -pct_contained_propagated: 50.0% -997 was added to the queue -QUEUE IS: [CCACATTTCT...CTTCCTCAAG:W2(V990_380_D0), GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1)] - - -#### getAllProbablePaths() The next node in the queue C is 990 - butterfly pct done: 3 / 8 = 37.5% pct done. -ReadsStartingAtV_START_BFLY, Node: 990 read: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -ReadsStartingAtV_START_BFLY, Node: 990 read: PairPath [_paths=[[990, 991, 992, 997], []]] -Exploring extension of: 1 paths that end at vertex: 990 - -== Current Paths Constructed Up To Vertex: 990 : -PathPartialReconstruction@[990] : [-1, 990] - -Adding the reads {PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]]=2, PairPath [_paths=[[990, 991, 992, 997], []]]=6} to the path [-1, 990] - - -################################################ -###### Exploring extension of v: 990 by successor: 991 -################################################ - - -Count of paths ending at v: 990 = 1 -path_ending_at_v: [-1, 990] - - -# [PathCounter(991)=0 Examining potential extension of path ending at node V: 990 by successor: 991, via path=[-1, 990] -path [-1, 990] is too short to check for triplet support. -ReadsOfPathUntilV: PATH: [-1, 990] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 990], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997], []]] --checking if subPath has enough read support. Exploring sub path: [-1, 990, 991] --readsOfPathUntilV: PairPath [_paths=[[-1, 990], []]] - -checking if pp: PairPath [_paths=[[-1, 990], []]] supports extension of [-1, 990, 991] => false -examining subPath: [-1, 990, 991] for reinforcement by read: [[-1, 990], []] :false -the read PairPath [_paths=[[-1, 990], []]](1) does not enforce the sub-path ([-1, 990, 991]) --readsOfPathUntilV: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] supports extension of [-1, 990, 991] => true -examining subPath: [-1, 990, 991] for reinforcement by read: [[990, 991, 992, 997, 986, 996], []] :true -the read PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]](2) enforces the sub-path ([-1, 990, 991]) --found: 2 reads supporting subpath. -the sub-path ([-1, 990, 991]) has PASSED - -Successful extension of 991 to generate path [-1, 990, 991] -updateReadsOfPath: [-1, 990, 991] -read PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] is consistent with 991 -read PairPath [_paths=[[990, 991, 992, 997], []]] is consistent with 991 -pct_contained_propagated: 33.333336% -991 was added to the queue -QUEUE IS: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1), CCTCATCAGCAAGAAGAAATCTTT:W7(V991_982_D1)] -* delaying tackling vertex: 997 since a parent hasn't been visited yet. - - -#### getAllProbablePaths() The next node in the queue C is 991 - butterfly pct done: 4 / 8 = 50.0% pct done. -ReadsStartingAtV_START_BFLY, Node: 991 read: PairPath [_paths=[[991, 992, 997], []]] -Exploring extension of: 1 paths that end at vertex: 991 - -== Current Paths Constructed Up To Vertex: 991 : -PathPartialReconstruction@[991] : [-1, 990, 991] - -Adding the reads {PairPath [_paths=[[991, 992, 997], []]]=2} to the path [-1, 990, 991] - - -################################################ -###### Exploring extension of v: 991 by successor: 992 -################################################ - - -Count of paths ending at v: 991 = 1 -path_ending_at_v: [-1, 990, 991] - - -# [PathCounter(992)=0 Examining potential extension of path ending at node V: 991 by successor: 992, via path=[-1, 990, 991] -TripletMapper doesnt contain node: 991 -ReadsOfPathUntilV: PATH: [-1, 990, 991] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 990], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[991, 992, 997], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997], []]] --checking if subPath has enough read support. Exploring sub path: [-1, 990, 991, 992] --readsOfPathUntilV: PairPath [_paths=[[-1, 990], []]] - -checking if pp: PairPath [_paths=[[-1, 990], []]] supports extension of [-1, 990, 991, 992] => false -examining subPath: [-1, 990, 991, 992] for reinforcement by read: [[-1, 990], []] :false -the read PairPath [_paths=[[-1, 990], []]](1) does not enforce the sub-path ([-1, 990, 991, 992]) --readsOfPathUntilV: PairPath [_paths=[[991, 992, 997], []]] - -checking if pp: PairPath [_paths=[[991, 992, 997], []]] supports extension of [-1, 990, 991, 992] => false -examining subPath: [-1, 990, 991, 992] for reinforcement by read: [[991, 992, 997], []] :false -the read PairPath [_paths=[[991, 992, 997], []]](2) does not enforce the sub-path ([-1, 990, 991, 992]) --readsOfPathUntilV: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] supports extension of [-1, 990, 991, 992] => true -examining subPath: [-1, 990, 991, 992] for reinforcement by read: [[990, 991, 992, 997, 986, 996], []] :true -the read PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]](2) enforces the sub-path ([-1, 990, 991, 992]) --found: 2 reads supporting subpath. -the sub-path ([-1, 990, 991, 992]) has PASSED - -Successful extension of 992 to generate path [-1, 990, 991, 992] -updateReadsOfPath: [-1, 990, 991, 992] -read PairPath [_paths=[[991, 992, 997], []]] is consistent with 992 -read PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] is consistent with 992 -read PairPath [_paths=[[990, 991, 992, 997], []]] is consistent with 992 -pct_contained_propagated: 25.0% -992 was added to the queue -QUEUE IS: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1), CTTTCCAAGTA:W8(V992_440_D2)] -* delaying tackling vertex: 997 since a parent hasn't been visited yet. - - -#### getAllProbablePaths() The next node in the queue C is 992 - butterfly pct done: 5 / 8 = 62.5% pct done. -ReadsStartingAtV_START_BFLY992 EMPTY -Exploring extension of: 1 paths that end at vertex: 992 - -== Current Paths Constructed Up To Vertex: 992 : -PathPartialReconstruction@[992] : [-1, 990, 991, 992] - - -################################################ -###### Exploring extension of v: 992 by successor: 997 -################################################ - - -Count of paths ending at v: 992 = 1 -path_ending_at_v: [-1, 990, 991, 992] - - -# [PathCounter(997)=0 Examining potential extension of path ending at node V: 992 by successor: 997, via path=[-1, 990, 991, 992] -TripletMapper doesnt contain node: 992 -ReadsOfPathUntilV: PATH: [-1, 990, 991, 992] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 990], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[991, 992, 997], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997], []]] --checking if subPath has enough read support. Exploring sub path: [992, 997] --readsOfPathUntilV: PairPath [_paths=[[-1, 990], []]] - -checking if pp: PairPath [_paths=[[-1, 990], []]] supports extension of [-1, 990, 991, 992, 997] => false -examining subPath: [992, 997] for reinforcement by read: [[-1, 990], []] :false -the read PairPath [_paths=[[-1, 990], []]](1) does not enforce the sub-path ([992, 997]) --readsOfPathUntilV: PairPath [_paths=[[991, 992, 997], []]] - -checking if pp: PairPath [_paths=[[991, 992, 997], []]] supports extension of [-1, 990, 991, 992, 997] => true -examining subPath: [992, 997] for reinforcement by read: [[991, 992, 997], []] :true -the read PairPath [_paths=[[991, 992, 997], []]](2) enforces the sub-path ([992, 997]) --found: 2 reads supporting subpath. -the sub-path ([992, 997]) has PASSED - -Successful extension of 997 to generate path [-1, 990, 991, 992, 997] -updateReadsOfPath: [-1, 990, 991, 992, 997] -read PairPath [_paths=[[991, 992, 997], []]] is consistent with 997 -read PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] is consistent with 997 -read PairPath [_paths=[[990, 991, 992, 997], []]] is consistent with 997 -pct_contained_propagated: 25.0% -QUEUE IS: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1)] - - -#### getAllProbablePaths() The next node in the queue C is 997 - butterfly pct done: 6 / 8 = 75.0% pct done. -ReadsStartingAtV_START_BFLY, Node: 997 read: PairPath [_paths=[[997, 986, 996], []]] -ReadsStartingAtV_START_BFLY, Node: 997 read: PairPath [_paths=[[997, 986], []]] -Exploring extension of: 2 paths that end at vertex: 997 - -== Current Paths Constructed Up To Vertex: 997 : -PathPartialReconstruction@[997] : [-1, 988, 997] -PathPartialReconstruction@[997] : [-1, 990, 991, 992, 997] - -Adding the reads {PairPath [_paths=[[997, 986, 996], []]]=6, PairPath [_paths=[[997, 986], []]]=2} to the path [-1, 988, 997] - -Adding the reads {PairPath [_paths=[[997, 986, 996], []]]=6, PairPath [_paths=[[997, 986], []]]=2} to the path [-1, 990, 991, 992, 997] - - -################################################ -###### Exploring extension of v: 997 by successor: 986 -################################################ - - -Count of paths ending at v: 997 = 2 -path_ending_at_v: [-1, 990, 991, 992, 997] -path_ending_at_v: [-1, 988, 997] - - -# [PathCounter(986)=0 Examining potential extension of path ending at node V: 997 by successor: 986, via path=[-1, 990, 991, 992, 997] -TripletMapper doesnt contain node: 997 -ReadsOfPathUntilV: PATH: [-1, 990, 991, 992, 997] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 990], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[991, 992, 997], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997], []]] --checking if subPath has enough read support. Exploring sub path: [997, 986] --readsOfPathUntilV: PairPath [_paths=[[-1, 990], []]] - -checking if pp: PairPath [_paths=[[-1, 990], []]] supports extension of [-1, 990, 991, 992, 997, 986] => false -examining subPath: [997, 986] for reinforcement by read: [[-1, 990], []] :false -the read PairPath [_paths=[[-1, 990], []]](1) does not enforce the sub-path ([997, 986]) --readsOfPathUntilV: PairPath [_paths=[[991, 992, 997], []]] - -checking if pp: PairPath [_paths=[[991, 992, 997], []]] supports extension of [-1, 990, 991, 992, 997, 986] => false -examining subPath: [997, 986] for reinforcement by read: [[991, 992, 997], []] :false -the read PairPath [_paths=[[991, 992, 997], []]](2) does not enforce the sub-path ([997, 986]) --readsOfPathUntilV: PairPath [_paths=[[997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[997, 986, 996], []]] supports extension of [-1, 990, 991, 992, 997, 986] => true -examining subPath: [997, 986] for reinforcement by read: [[997, 986, 996], []] :true -the read PairPath [_paths=[[997, 986, 996], []]](6) enforces the sub-path ([997, 986]) --found: 6 reads supporting subpath. -the sub-path ([997, 986]) has PASSED - -Successful extension of 986 to generate path [-1, 990, 991, 992, 997, 986] -updateReadsOfPath: [-1, 990, 991, 992, 997, 986] -read PairPath [_paths=[[997, 986, 996], []]] is consistent with 986 -read PairPath [_paths=[[997, 986], []]] is consistent with 986 -read PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] is consistent with 986 -pct_contained_propagated: 50.0% - - -# [PathCounter(986)=1 Examining potential extension of path ending at node V: 997 by successor: 986, via path=[-1, 988, 997] -TripletMapper doesnt contain node: 997 -ReadsOfPathUntilV: PATH: [-1, 988, 997] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[988, 997], []]] --checking if subPath has enough read support. Exploring sub path: [997, 986] --readsOfPathUntilV: PairPath [_paths=[[997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[997, 986, 996], []]] supports extension of [-1, 988, 997, 986] => true -examining subPath: [997, 986] for reinforcement by read: [[997, 986, 996], []] :true -the read PairPath [_paths=[[997, 986, 996], []]](6) enforces the sub-path ([997, 986]) --found: 6 reads supporting subpath. -the sub-path ([997, 986]) has PASSED - -Successful extension of 986 to generate path [-1, 988, 997, 986] -updateReadsOfPath: [-1, 988, 997, 986] -read PairPath [_paths=[[997, 986, 996], []]] is consistent with 986 -read PairPath [_paths=[[997, 986], []]] is consistent with 986 -pct_contained_propagated: 50.0% -986 was added to the queue -QUEUE IS: [GAGCACTCTGAACCCTGTGAGGCA:W6(V986_981_D2)] - - -#### getAllProbablePaths() The next node in the queue C is 986 - butterfly pct done: 7 / 8 = 87.5% pct done. -ReadsStartingAtV_START_BFLY, Node: 986 read: PairPath [_paths=[[986, 996], []]] -Exploring extension of: 2 paths that end at vertex: 986 - -== Current Paths Constructed Up To Vertex: 986 : -PathPartialReconstruction@[986] : [-1, 990, 991, 992, 997, 986] -PathPartialReconstruction@[986] : [-1, 988, 997, 986] - -Adding the reads {PairPath [_paths=[[986, 996], []]]=2} to the path [-1, 990, 991, 992, 997, 986] - -Adding the reads {PairPath [_paths=[[986, 996], []]]=2} to the path [-1, 988, 997, 986] - - -################################################ -###### Exploring extension of v: 986 by successor: 996 -################################################ - - -Count of paths ending at v: 986 = 2 -path_ending_at_v: [-1, 990, 991, 992, 997, 986] -path_ending_at_v: [-1, 988, 997, 986] - - -# [PathCounter(996)=0 Examining potential extension of path ending at node V: 986 by successor: 996, via path=[-1, 990, 991, 992, 997, 986] -TripletMapper doesnt contain node: 986 -ReadsOfPathUntilV: PATH: [-1, 990, 991, 992, 997, 986] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 990], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[991, 992, 997], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997], []]] --checking if subPath has enough read support. Exploring sub path: [996] --readsOfPathUntilV: PairPath [_paths=[[-1, 990], []]] - -checking if pp: PairPath [_paths=[[-1, 990], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996] => false -examining subPath: [996] for reinforcement by read: [[-1, 990], []] :false -the read PairPath [_paths=[[-1, 990], []]](1) does not enforce the sub-path ([996]) --readsOfPathUntilV: PairPath [_paths=[[991, 992, 997], []]] - -checking if pp: PairPath [_paths=[[991, 992, 997], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996] => false -examining subPath: [996] for reinforcement by read: [[991, 992, 997], []] :false -the read PairPath [_paths=[[991, 992, 997], []]](2) does not enforce the sub-path ([996]) --readsOfPathUntilV: PairPath [_paths=[[997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[997, 986, 996], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996] => true -examining subPath: [996] for reinforcement by read: [[997, 986, 996], []] :true -the read PairPath [_paths=[[997, 986, 996], []]](6) enforces the sub-path ([996]) --found: 6 reads supporting subpath. -the sub-path ([996]) has PASSED - -Successful extension of 996 to generate path [-1, 990, 991, 992, 997, 986, 996] -updateReadsOfPath: [-1, 990, 991, 992, 997, 986, 996] -read PairPath [_paths=[[997, 986, 996], []]] is consistent with 996 -read PairPath [_paths=[[986, 996], []]] is consistent with 996 -read PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] is consistent with 996 -pct_contained_propagated: 57.14286% - - -# [PathCounter(996)=1 Examining potential extension of path ending at node V: 986 by successor: 996, via path=[-1, 988, 997, 986] -TripletMapper doesnt contain node: 986 -ReadsOfPathUntilV: PATH: [-1, 988, 997, 986] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[988, 997], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 996], []]] --checking if subPath has enough read support. Exploring sub path: [996] --readsOfPathUntilV: PairPath [_paths=[[997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[997, 986, 996], []]] supports extension of [-1, 988, 997, 986, 996] => true -examining subPath: [996] for reinforcement by read: [[997, 986, 996], []] :true -the read PairPath [_paths=[[997, 986, 996], []]](6) enforces the sub-path ([996]) --found: 6 reads supporting subpath. -the sub-path ([996]) has PASSED - -Successful extension of 996 to generate path [-1, 988, 997, 986, 996] -updateReadsOfPath: [-1, 988, 997, 986, 996] -read PairPath [_paths=[[997, 986, 996], []]] is consistent with 996 -read PairPath [_paths=[[986, 996], []]] is consistent with 996 -pct_contained_propagated: 60.000004% -996 was added to the queue -QUEUE IS: [AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3)] - - -#### getAllProbablePaths() The next node in the queue C is 996 - butterfly pct done: 8 / 8 = 100.0% pct done. -ReadsStartingAtV_START_BFLY, Node: 996 read: PairPath [_paths=[[996, 984], []]] -ReadsStartingAtV_START_BFLY, Node: 996 read: PairPath [_paths=[[996], []]] -Exploring extension of: 2 paths that end at vertex: 996 - -== Current Paths Constructed Up To Vertex: 996 : -PathPartialReconstruction@[996] : [-1, 990, 991, 992, 997, 986, 996] -PathPartialReconstruction@[996] : [-1, 988, 997, 986, 996] - -Adding the reads {PairPath [_paths=[[996, 984], []]]=4, PairPath [_paths=[[996], []]]=14} to the path [-1, 990, 991, 992, 997, 986, 996] - -Adding the reads {PairPath [_paths=[[996, 984], []]]=4, PairPath [_paths=[[996], []]]=14} to the path [-1, 988, 997, 986, 996] - - -################################################ -###### Exploring extension of v: 996 by successor: 984 -################################################ - - -Count of paths ending at v: 996 = 2 -path_ending_at_v: [-1, 990, 991, 992, 997, 986, 996] -path_ending_at_v: [-1, 988, 997, 986, 996] - - -# [PathCounter(984)=0 Examining potential extension of path ending at node V: 996 by successor: 984, via path=[-1, 990, 991, 992, 997, 986, 996] -TripletMapper doesnt contain node: 996 -ReadsOfPathUntilV: PATH: [-1, 990, 991, 992, 997, 986, 996] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 990], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[991, 992, 997], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 984], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997], []]] --checking if subPath has enough read support. Exploring sub path: [996, 984] --readsOfPathUntilV: PairPath [_paths=[[-1, 990], []]] - -checking if pp: PairPath [_paths=[[-1, 990], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984] => false -examining subPath: [996, 984] for reinforcement by read: [[-1, 990], []] :false -the read PairPath [_paths=[[-1, 990], []]](1) does not enforce the sub-path ([996, 984]) --readsOfPathUntilV: PairPath [_paths=[[991, 992, 997], []]] - -checking if pp: PairPath [_paths=[[991, 992, 997], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984] => false -examining subPath: [996, 984] for reinforcement by read: [[991, 992, 997], []] :false -the read PairPath [_paths=[[991, 992, 997], []]](2) does not enforce the sub-path ([996, 984]) --readsOfPathUntilV: PairPath [_paths=[[997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[997, 986, 996], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984] => false -examining subPath: [996, 984] for reinforcement by read: [[997, 986, 996], []] :false -the read PairPath [_paths=[[997, 986, 996], []]](6) does not enforce the sub-path ([996, 984]) --readsOfPathUntilV: PairPath [_paths=[[996, 984], []]] - -checking if pp: PairPath [_paths=[[996, 984], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984] => true -examining subPath: [996, 984] for reinforcement by read: [[996, 984], []] :true -the read PairPath [_paths=[[996, 984], []]](4) enforces the sub-path ([996, 984]) --found: 4 reads supporting subpath. -the sub-path ([996, 984]) has PASSED - -Successful extension of 984 to generate path [-1, 990, 991, 992, 997, 986, 996, 984] -updateReadsOfPath: [-1, 990, 991, 992, 997, 986, 996, 984] -read PairPath [_paths=[[996, 984], []]] is consistent with 984 -read PairPath [_paths=[[996], []]] is consistent with 984 -pct_contained_propagated: 77.77778% - - -# [PathCounter(984)=1 Examining potential extension of path ending at node V: 996 by successor: 984, via path=[-1, 988, 997, 986, 996] -TripletMapper doesnt contain node: 996 -ReadsOfPathUntilV: PATH: [-1, 988, 997, 986, 996] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 984], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[988, 997], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] --checking if subPath has enough read support. Exploring sub path: [996, 984] --readsOfPathUntilV: PairPath [_paths=[[997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[997, 986, 996], []]] supports extension of [-1, 988, 997, 986, 996, 984] => false -examining subPath: [996, 984] for reinforcement by read: [[997, 986, 996], []] :false -the read PairPath [_paths=[[997, 986, 996], []]](6) does not enforce the sub-path ([996, 984]) --readsOfPathUntilV: PairPath [_paths=[[-1, 988], []]] - -checking if pp: PairPath [_paths=[[-1, 988], []]] supports extension of [-1, 988, 997, 986, 996, 984] => false -examining subPath: [996, 984] for reinforcement by read: [[-1, 988], []] :false -the read PairPath [_paths=[[-1, 988], []]](1) does not enforce the sub-path ([996, 984]) --readsOfPathUntilV: PairPath [_paths=[[996, 984], []]] - -checking if pp: PairPath [_paths=[[996, 984], []]] supports extension of [-1, 988, 997, 986, 996, 984] => true -examining subPath: [996, 984] for reinforcement by read: [[996, 984], []] :true -the read PairPath [_paths=[[996, 984], []]](4) enforces the sub-path ([996, 984]) --found: 4 reads supporting subpath. -the sub-path ([996, 984]) has PASSED - -Successful extension of 984 to generate path [-1, 988, 997, 986, 996, 984] -updateReadsOfPath: [-1, 988, 997, 986, 996, 984] -read PairPath [_paths=[[996, 984], []]] is consistent with 984 -read PairPath [_paths=[[996], []]] is consistent with 984 -pct_contained_propagated: 71.42857% -984 was added to the queue -QUEUE IS: [AGCCACAGGT...CTTCCTGTGA:W5(V984_717_D4)] - - -#### getAllProbablePaths() The next node in the queue C is 984 - butterfly pct done: 9 / 8 = 112.5% pct done. -ReadsStartingAtV_START_BFLY, Node: 984 read: PairPath [_paths=[[984, -2], []]] -Exploring extension of: 2 paths that end at vertex: 984 - -== Current Paths Constructed Up To Vertex: 984 : -PathPartialReconstruction@[984] : [-1, 990, 991, 992, 997, 986, 996, 984] -PathPartialReconstruction@[984] : [-1, 988, 997, 986, 996, 984] - -Adding the reads {PairPath [_paths=[[984, -2], []]]=1} to the path [-1, 990, 991, 992, 997, 986, 996, 984] - -Adding the reads {PairPath [_paths=[[984, -2], []]]=1} to the path [-1, 988, 997, 986, 996, 984] - - -################################################ -###### Exploring extension of v: 984 by successor: -2 -################################################ - - -Count of paths ending at v: 984 = 2 -path_ending_at_v: [-1, 990, 991, 992, 997, 986, 996, 984] -path_ending_at_v: [-1, 988, 997, 986, 996, 984] - - -# [PathCounter(-2)=0 Examining potential extension of path ending at node V: 984 by successor: -2, via path=[-1, 990, 991, 992, 997, 986, 996, 984] -TripletMapper doesnt contain node: 984 -ReadsOfPathUntilV: PATH: [-1, 990, 991, 992, 997, 986, 996, 984] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 990], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[991, 992, 997], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 984], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[984, -2], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[990, 991, 992, 997], []]] --checking if subPath has enough read support. Exploring sub path: [996, 984, -2] --readsOfPathUntilV: PairPath [_paths=[[-1, 990], []]] - -checking if pp: PairPath [_paths=[[-1, 990], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[-1, 990], []] :false -the read PairPath [_paths=[[-1, 990], []]](1) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[991, 992, 997], []]] - -checking if pp: PairPath [_paths=[[991, 992, 997], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[991, 992, 997], []] :false -the read PairPath [_paths=[[991, 992, 997], []]](2) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[997, 986, 996], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[997, 986, 996], []] :false -the read PairPath [_paths=[[997, 986, 996], []]](6) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[996, 984], []]] - -checking if pp: PairPath [_paths=[[996, 984], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[996, 984], []] :false -the read PairPath [_paths=[[996, 984], []]](4) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[997, 986], []]] - -checking if pp: PairPath [_paths=[[997, 986], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[997, 986], []] :false -the read PairPath [_paths=[[997, 986], []]](2) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[984, -2], []]] - -checking if pp: PairPath [_paths=[[984, -2], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[984, -2], []] :false -the read PairPath [_paths=[[984, -2], []]](1) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[986, 996], []]] - -checking if pp: PairPath [_paths=[[986, 996], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[986, 996], []] :false -the read PairPath [_paths=[[986, 996], []]](2) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[990, 991, 992, 997, 986, 996], []] :false -the read PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]](2) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[996], []]] - -checking if pp: PairPath [_paths=[[996], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[996], []] :false -the read PairPath [_paths=[[996], []]](14) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[990, 991, 992, 997], []]] - -checking if pp: PairPath [_paths=[[990, 991, 992, 997], []]] supports extension of [-1, 990, 991, 992, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[990, 991, 992, 997], []] :false -the read PairPath [_paths=[[990, 991, 992, 997], []]](6) does not enforce the sub-path ([996, 984, -2]) --found: 0 reads supporting subpath. -the sub-path ([996, 984, -2]) has NOT PASSED - -Successful extension of -2 to generate path [-1, 990, 991, 992, 997, 986, 996, 984, -2] -updateReadsOfPath: [-1, 990, 991, 992, 997, 986, 996, 984, -2] -read PairPath [_paths=[[984, -2], []]] is consistent with -2 -pct_contained_propagated: 90.0% - - -# [PathCounter(-2)=1 Examining potential extension of path ending at node V: 984 by successor: -2, via path=[-1, 988, 997, 986, 996, 984] -TripletMapper doesnt contain node: 984 -ReadsOfPathUntilV: PATH: [-1, 988, 997, 986, 996, 984] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 984], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 986], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[984, -2], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[988, 997], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 996], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] --checking if subPath has enough read support. Exploring sub path: [996, 984, -2] --readsOfPathUntilV: PairPath [_paths=[[997, 986, 996], []]] - -checking if pp: PairPath [_paths=[[997, 986, 996], []]] supports extension of [-1, 988, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[997, 986, 996], []] :false -the read PairPath [_paths=[[997, 986, 996], []]](6) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[-1, 988], []]] - -checking if pp: PairPath [_paths=[[-1, 988], []]] supports extension of [-1, 988, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[-1, 988], []] :false -the read PairPath [_paths=[[-1, 988], []]](1) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[996, 984], []]] - -checking if pp: PairPath [_paths=[[996, 984], []]] supports extension of [-1, 988, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[996, 984], []] :false -the read PairPath [_paths=[[996, 984], []]](4) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[997, 986], []]] - -checking if pp: PairPath [_paths=[[997, 986], []]] supports extension of [-1, 988, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[997, 986], []] :false -the read PairPath [_paths=[[997, 986], []]](2) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[984, -2], []]] - -checking if pp: PairPath [_paths=[[984, -2], []]] supports extension of [-1, 988, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[984, -2], []] :false -the read PairPath [_paths=[[984, -2], []]](1) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[988, 997], []]] - -checking if pp: PairPath [_paths=[[988, 997], []]] supports extension of [-1, 988, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[988, 997], []] :false -the read PairPath [_paths=[[988, 997], []]](2) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[986, 996], []]] - -checking if pp: PairPath [_paths=[[986, 996], []]] supports extension of [-1, 988, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[986, 996], []] :false -the read PairPath [_paths=[[986, 996], []]](2) does not enforce the sub-path ([996, 984, -2]) --readsOfPathUntilV: PairPath [_paths=[[996], []]] - -checking if pp: PairPath [_paths=[[996], []]] supports extension of [-1, 988, 997, 986, 996, 984, -2] => false -examining subPath: [996, 984, -2] for reinforcement by read: [[996], []] :false -the read PairPath [_paths=[[996], []]](14) does not enforce the sub-path ([996, 984, -2]) --found: 0 reads supporting subpath. -the sub-path ([996, 984, -2]) has NOT PASSED - -Successful extension of -2 to generate path [-1, 988, 997, 986, 996, 984, -2] -updateReadsOfPath: [-1, 988, 997, 986, 996, 984, -2] -read PairPath [_paths=[[984, -2], []]] is consistent with -2 -pct_contained_propagated: 87.5% --2 was added to the queue -QUEUE IS: [:W-1(V-2_D-1)] - - -#### getAllProbablePaths() The next node in the queue C is -2 - butterfly pct done: 10 / 8 = 125.0% pct done. -ReadsStartingAtV_START_BFLY-2 EMPTY -Exploring extension of: 2 paths that end at vertex: -2 - -== Current Paths Constructed Up To Vertex: -2 : -PathPartialReconstruction@[-2] : [-1, 990, 991, 992, 997, 986, 996, 984, -2] -PathPartialReconstruction@[-2] : [-1, 988, 997, 986, 996, 984, -2] -the finished path: [-1, 990, 991, 992, 997, 986, 996, 984, -2] was added to the final paths, with 40 support -the finished path: [-1, 988, 997, 986, 996, 984, -2] was added to the final paths, with 32 support --reconstructing sequence for path[: 1 of 2]: [-1, 988, 997, 986, 996, 984, -2] --reconstructing sequence for path[: 2 of 2]: [-1, 990, 991, 992, 997, 986, 996, 984, -2] - - -**** Removing identical subsequences among: 2 paths. - - - [0,1] FinalPath@BeforeFiltering: [-1, 988, 997, 986, 996, 984, -2] -FinalPath@BeforeFiltering: [-1, 990, 991, 992, 997, 986, 996, 984, -2] -ReadMappings BEFORE Path-to-orig_ID conversion: - - -## assignCompatibleReadsToPaths() -assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 990], []]] is NOT compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 988], []]] is compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[996, 984], []]] is compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[996], []]] is compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[997, 986, 996], []]] is compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[997, 986], []]] is compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[984, -2], []]] is compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[986, 996], []]] is compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[988, 997], []]] is compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] is NOT compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[990, 991, 992, 997], []]] is NOT compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[991, 992, 997], []]] is NOT compatible with [-1, 988, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 990], []]] is compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 988], []]] is NOT compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[996, 984], []]] is compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[996], []]] is compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[997, 986, 996], []]] is compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[997, 986], []]] is compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[984, -2], []]] is compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[986, 996], []]] is compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[988, 997], []]] is NOT compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] is compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[990, 991, 992, 997], []]] is compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -assignCompatibleReadsToPaths: PairPath [_paths=[[991, 992, 997], []]] is compatible with [-1, 990, 991, 992, 997, 986, 996, 984, -2] -PRELIM_FINAL_PATH: -[-1, 988, 997, 986, 996, 984, -2] -contains: -PairPath [_paths=[[997, 986, 996], []]] count: 6 -PairPath [_paths=[[-1, 988], []]] count: 1 -PairPath [_paths=[[996, 984], []]] count: 4 -PairPath [_paths=[[997, 986], []]] count: 2 -PairPath [_paths=[[984, -2], []]] count: 1 -PairPath [_paths=[[988, 997], []]] count: 2 -PairPath [_paths=[[986, 996], []]] count: 2 -PairPath [_paths=[[996], []]] count: 14 -Total support: 32 - -PRELIM_FINAL_PATH: -[-1, 990, 991, 992, 997, 986, 996, 984, -2] -contains: -PairPath [_paths=[[-1, 990], []]] count: 1 -PairPath [_paths=[[997, 986, 996], []]] count: 6 -PairPath [_paths=[[991, 992, 997], []]] count: 2 -PairPath [_paths=[[996, 984], []]] count: 4 -PairPath [_paths=[[997, 986], []]] count: 2 -PairPath [_paths=[[984, -2], []]] count: 1 -PairPath [_paths=[[986, 996], []]] count: 2 -PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]] count: 2 -PairPath [_paths=[[996], []]] count: 14 -PairPath [_paths=[[990, 991, 992, 997], []]] count: 6 -Total support: 40 - -## ILLUSTRATING FINAL ASSEMBLIES - -PATH: [-1, 988, 997, 986, 996, 984, -2] - -Path Illustration: - -======= PATH: [-1, 988, 997, 986, 996, 984, -2] -== Read: [[-1, 988], []] read_support: 1 - == Read: [[988, 997], []] read_support: 2 - === Read: [[997, 986, 996], []] read_support: 6 - == Read: [[997, 986], []] read_support: 2 - == Read: [[986, 996], []] read_support: 2 - == Read: [[996, 984], []] read_support: 4 - = Read: [[996], []] read_support: 14 - == Read: [[984, -2], []] read_support: 1 - - - -PATH: [-1, 990, 991, 992, 997, 986, 996, 984, -2] - -Path Illustration: - -========= PATH: [-1, 990, 991, 992, 997, 986, 996, 984, -2] -== Read: [[-1, 990], []] read_support: 1 - ====== Read: [[990, 991, 992, 997, 986, 996], []] read_support: 2 - ==== Read: [[990, 991, 992, 997], []] read_support: 6 - === Read: [[991, 992, 997], []] read_support: 2 - === Read: [[997, 986, 996], []] read_support: 6 - == Read: [[997, 986], []] read_support: 2 - == Read: [[986, 996], []] read_support: 2 - == Read: [[996, 984], []] read_support: 4 - = Read: [[996], []] read_support: 14 - == Read: [[984, -2], []] read_support: 1 - - -Converting graph node IDs back to original IDs. --final_path: [-1, 988, 997, 986, 996, 984, -2] now set to: [-1, 945, 451, 981, 549, 717, -2] --and set to contents: <32, 0> -pp: PairPath [_paths=[[997, 986, 996], []]], updated_pp: PairPath [_paths=[[451, 981, 549], []]], count: 6 -pp: PairPath [_paths=[[-1, 988], []]], updated_pp: PairPath [_paths=[[-1, 945], []]], count: 1 -pp: PairPath [_paths=[[996, 984], []]], updated_pp: PairPath [_paths=[[549, 717], []]], count: 4 -pp: PairPath [_paths=[[997, 986], []]], updated_pp: PairPath [_paths=[[451, 981], []]], count: 2 -pp: PairPath [_paths=[[984, -2], []]], updated_pp: PairPath [_paths=[[717, -2], []]], count: 1 -pp: PairPath [_paths=[[988, 997], []]], updated_pp: PairPath [_paths=[[945, 451], []]], count: 2 -pp: PairPath [_paths=[[986, 996], []]], updated_pp: PairPath [_paths=[[981, 549], []]], count: 2 -pp: PairPath [_paths=[[996], []]], updated_pp: PairPath [_paths=[[549], []]], count: 14 --final_path: [-1, 990, 991, 992, 997, 986, 996, 984, -2] now set to: [-1, 380, 982, 440, 451, 981, 549, 717, -2] --and set to contents: <40, 0> -pp: PairPath [_paths=[[-1, 990], []]], updated_pp: PairPath [_paths=[[-1, 380], []]], count: 1 -pp: PairPath [_paths=[[997, 986, 996], []]], updated_pp: PairPath [_paths=[[451, 981, 549], []]], count: 6 -pp: PairPath [_paths=[[991, 992, 997], []]], updated_pp: PairPath [_paths=[[982, 440, 451], []]], count: 2 -pp: PairPath [_paths=[[996, 984], []]], updated_pp: PairPath [_paths=[[549, 717], []]], count: 4 -pp: PairPath [_paths=[[997, 986], []]], updated_pp: PairPath [_paths=[[451, 981], []]], count: 2 -pp: PairPath [_paths=[[984, -2], []]], updated_pp: PairPath [_paths=[[717, -2], []]], count: 1 -pp: PairPath [_paths=[[986, 996], []]], updated_pp: PairPath [_paths=[[981, 549], []]], count: 2 -pp: PairPath [_paths=[[990, 991, 992, 997, 986, 996], []]], updated_pp: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]], count: 2 -pp: PairPath [_paths=[[996], []]], updated_pp: PairPath [_paths=[[549], []]], count: 14 -pp: PairPath [_paths=[[990, 991, 992, 997], []]], updated_pp: PairPath [_paths=[[380, 982, 440, 451], []]], count: 6 -** Post-original ID conversion, path support: -PRELIM_FINAL_PATH: -[-1, 945, 451, 981, 549, 717, -2] -contains: -PairPath [_paths=[[549, 717], []]] count: 4 -PairPath [_paths=[[945, 451], []]] count: 2 -PairPath [_paths=[[717, -2], []]] count: 1 -PairPath [_paths=[[451, 981, 549], []]] count: 6 -PairPath [_paths=[[451, 981], []]] count: 2 -PairPath [_paths=[[549], []]] count: 14 -PairPath [_paths=[[-1, 945], []]] count: 1 -PairPath [_paths=[[981, 549], []]] count: 2 -Total support: 32 - -PRELIM_FINAL_PATH: -[-1, 380, 982, 440, 451, 981, 549, 717, -2] -contains: -PairPath [_paths=[[549, 717], []]] count: 4 -PairPath [_paths=[[982, 440, 451], []]] count: 2 -PairPath [_paths=[[-1, 380], []]] count: 1 -PairPath [_paths=[[717, -2], []]] count: 1 -PairPath [_paths=[[451, 981, 549], []]] count: 6 -PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] count: 2 -PairPath [_paths=[[451, 981], []]] count: 2 -PairPath [_paths=[[549], []]] count: 14 -PairPath [_paths=[[981, 549], []]] count: 2 -PairPath [_paths=[[380, 982, 440, 451], []]] count: 6 -Total support: 40 - -SECTION -========= CD-HIT -like Removal of Too-Similar Sequences with Lesser Read Support ========= - - - - -**** CD-HIT style path collapsing at end of run. - - - [0,1] - -**** - -checking twoPathsAreTooSimilar ([-1, 380, 982, 440, 451, 981, 549, 717, -2],[-1, 945, 451, 981, 549, 717, -2]) -**** - - -getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981, 549, 717, -2] Path2: [-1, 945, 451, 981, 549, 717, -2] -Paths [-1, 380, 982, 440, 451, 981, 549, 717, -2][-1, 945, 451, 981, 549, 717, -2] share node 717 -getting prefix alignment for [-1, 380, 982, 440, 451, 981, 549][-1, 945, 451, 981, 549] -getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981, 549] Path2: [-1, 945, 451, 981, 549] -Paths [-1, 380, 982, 440, 451, 981, 549][-1, 945, 451, 981, 549] share node 549 -getting prefix alignment for [-1, 380, 982, 440, 451, 981][-1, 945, 451, 981] -getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981] Path2: [-1, 945, 451, 981] -Paths [-1, 380, 982, 440, 451, 981][-1, 945, 451, 981] share node 981 -getting prefix alignment for [-1, 380, 982, 440, 451][-1, 945, 451] -getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451] Path2: [-1, 945, 451] -Paths [-1, 380, 982, 440, 451][-1, 945, 451] share node 451 -getting prefix alignment for [-1, 380, 982, 440][-1, 945] -getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440] Path2: [-1, 945] --no shared node, alignment not cached, computing: [-1, 380, 982, 440] to [-1, 945] --path1s length: 94, path2s length: 59 --running Needleman-Wunsch alignment of path sequences -Nov 07, 2025 11:53:44 PM jaligner.NeedlemanWunschGotoh construct -INFO: Started... -Nov 07, 2025 11:53:44 PM jaligner.NeedlemanWunschGotoh construct -INFO: Finished. -Nov 07, 2025 11:53:44 PM jaligner.NeedlemanWunschGotoh traceback -INFO: Started... -Nov 07, 2025 11:53:44 PM jaligner.NeedlemanWunschGotoh traceback -INFO: Finished. -A 1 GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGAC 50 - .|..||||||..|.| -B 1 -----------------------------------AGAATACAAAATGCC 15 - -A 51 TTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTA 94 - ||||||.|||||||||||||.||||||||||||||||||||||| -B 16 TTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 59 - - -Percent A in alignment = 59 / 94 = 62.765957% -Percent B in alignment = 59 / 59 = 100.0% -Matches: 51, Mismatches: 8, gaps: 0, align_len: 59 -percent_identity: 86.440674, percent_gapped: 0.0 -max_percent_aligned: 100.0 -max internal gap length: 0 - -(start of graph) Total number of significant alignment diffs = (mismatches: 8 + internal_gaps: 0 + right_gap_len: 0 = 8 -AlignmentStats: matches: 51, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 -path prefix alignment stats for: [-1, 380, 982, 440] and [-1, 945] : matches: 51, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 -getPrevCalcNumMismatches: Path1: [451] Path2: [451] -paths are equivalent: Path1:[451], Path2:[451] and have alignment stats:matches: 97, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 -getting suffix alignment for: [][] -getPrevCalcNumMismatches: Path1: [] Path2: [] -suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 -combining suffix and prefix alignment stats: matches: 148, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 -path prefix alignment stats for: [-1, 380, 982, 440, 451] and [-1, 945, 451] : matches: 148, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 -getPrevCalcNumMismatches: Path1: [981] Path2: [981] -paths are equivalent: Path1:[981], Path2:[981] and have alignment stats:matches: 47, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 -getting suffix alignment for: [][] -getPrevCalcNumMismatches: Path1: [] Path2: [] -key: [];[], cached as: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 -suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 -combining suffix and prefix alignment stats: matches: 195, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 -path prefix alignment stats for: [-1, 380, 982, 440, 451, 981] and [-1, 945, 451, 981] : matches: 195, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 -getPrevCalcNumMismatches: Path1: [549] Path2: [549] -paths are equivalent: Path1:[549], Path2:[549] and have alignment stats:matches: 191, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 -getting suffix alignment for: [][] -getPrevCalcNumMismatches: Path1: [] Path2: [] -key: [];[], cached as: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 -suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 -combining suffix and prefix alignment stats: matches: 386, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 -path prefix alignment stats for: [-1, 380, 982, 440, 451, 981, 549] and [-1, 945, 451, 981, 549] : matches: 386, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 -getPrevCalcNumMismatches: Path1: [717] Path2: [717] -paths are equivalent: Path1:[717], Path2:[717] and have alignment stats:matches: 65, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 -getting suffix alignment for: [-2][-2] -getPrevCalcNumMismatches: Path1: [-2] Path2: [-2] -suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 -combining suffix and prefix alignment stats: matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 -the two paths have these stats: numMM=8, max_internal_gap_length=0, identity=97.82%, tooSimilar: false - - -==== -Running PATH alignment of : [-1, 380, 982, 440, 451, 981, 549, 717, -2] to [-1, 945, 451, 981, 549, 717, -2] :: numMM:8, max_internal_gap: 0, path_per_id = 97.82, tooSimilar: false -matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 - - -*** REDUCE: they are PLENTY DIFFERENT *** - - - -SECTION -============= Begin Assembly =============== - - -Assembling subcomponent 1 -Subcomponent: 1, adding pairpath: PairPath [_paths=[[994, 995], []]] -#### Component Read Summary BEFORE PairPath-per-node Reduction -***** PairPath Counts ***** -componentReadHash, start node: 994 has size: 1 -Node: 994 has 1 pairpaths stored: - PairPath [_paths=[[994, 995], []]] has read support: 2 - -## Total number of pairpaths: 1 -#### Component Read Summary AFTER PairPath-per-node Reduction -***** PairPath Counts ***** -componentReadHash, start node: 994 has size: 1 -Node: 994 has 1 pairpaths stored: - PairPath [_paths=[[994, 995], []]] has read support: 2 - -## Total number of pairpaths: 1 -### Extracting triplets from reads. - -### 0 nodes have locked-in triplet paths: -### Extracting complex path prefixes from reads. --capturing path prefixes --removing prefixes that are subpaths of other prefixes - -#### Extended triplets from reads: -Adding edge from S to AAACCCAGCCCCGTGGAGGGAGCCACC:W1(V994_786_D0) -Adding edge from AGCCACAGGT...CTTCCTGTGA:W5(V995_717_D1) to T - -SECTION -############### -## Starting Butterfly Assembly ## -################### - - -PairPaths to assemble: -Start Vertex:-1 -PairPaths@BflyStart: PairPath [_paths=[[-1, 994], []]]=1 -Start Vertex:994 -PairPaths@BflyStart: PairPath [_paths=[[994, 995], []]]=2 -Start Vertex:995 -PairPaths@BflyStart: PairPath [_paths=[[995, -2], []]]=1 -QUEUE IS: [:W2147483647(V-1_D-1)] - - -#### getAllProbablePaths() The next node in the queue C is -1 - butterfly pct done: 1 / 2 = 50.0% pct done. -ReadsStartingAtV_START_BFLY, Node: -1 read: PairPath [_paths=[[-1, 994], []]] -Exploring extension of: 1 paths that end at vertex: -1 - -== Current Paths Constructed Up To Vertex: -1 : -PathPartialReconstruction@[-1] : [-1] - -Adding the reads {PairPath [_paths=[[-1, 994], []]]=1} to the path [-1] - - -################################################ -###### Exploring extension of v: -1 by successor: 994 -################################################ - - -Count of paths ending at v: -1 = 1 -path_ending_at_v: [-1] - - -# [PathCounter(994)=0 Examining potential extension of path ending at node V: -1 by successor: 994, via path=[-1] -path [-1] is too short to check for triplet support. -ReadsOfPathUntilV: PATH: [-1] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 994], []]] --checking if subPath has enough read support. Exploring sub path: [-1, 994] --readsOfPathUntilV: PairPath [_paths=[[-1, 994], []]] - -checking if pp: PairPath [_paths=[[-1, 994], []]] supports extension of [-1, 994] => true -examining subPath: [-1, 994] for reinforcement by read: [[-1, 994], []] :true -the read PairPath [_paths=[[-1, 994], []]](1) enforces the sub-path ([-1, 994]) --found: 1 reads supporting subpath. -the sub-path ([-1, 994]) has PASSED - -Successful extension of 994 to generate path [-1, 994] -updateReadsOfPath: [-1, 994] -read PairPath [_paths=[[-1, 994], []]] is consistent with 994 -pct_contained_propagated: 0.0% -994 was added to the queue - - -################################################ -###### Exploring extension of v: -1 by successor: 988 -################################################ - - -component either lacks: 988 or at sink - - -################################################ -###### Exploring extension of v: -1 by successor: 990 -################################################ - - -component either lacks: 990 or at sink -QUEUE IS: [AAACCCAGCCCCGTGGAGGGAGCCACC:W1(V994_786_D0)] - - -#### getAllProbablePaths() The next node in the queue C is 994 - butterfly pct done: 2 / 2 = 100.0% pct done. -ReadsStartingAtV_START_BFLY, Node: 994 read: PairPath [_paths=[[994, 995], []]] -Exploring extension of: 1 paths that end at vertex: 994 - -== Current Paths Constructed Up To Vertex: 994 : -PathPartialReconstruction@[994] : [-1, 994] - -Adding the reads {PairPath [_paths=[[994, 995], []]]=2} to the path [-1, 994] - - -################################################ -###### Exploring extension of v: 994 by successor: 995 -################################################ - - -Count of paths ending at v: 994 = 1 -path_ending_at_v: [-1, 994] - - -# [PathCounter(995)=0 Examining potential extension of path ending at node V: 994 by successor: 995, via path=[-1, 994] -path [-1, 994] is too short to check for triplet support. -ReadsOfPathUntilV: PATH: [-1, 994] -ReadsOfPathUntiV: READ: PairPath [_paths=[[994, 995], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 994], []]] --checking if subPath has enough read support. Exploring sub path: [-1, 994, 995] --readsOfPathUntilV: PairPath [_paths=[[994, 995], []]] - -checking if pp: PairPath [_paths=[[994, 995], []]] supports extension of [-1, 994, 995] => true -examining subPath: [-1, 994, 995] for reinforcement by read: [[994, 995], []] :true -the read PairPath [_paths=[[994, 995], []]](2) enforces the sub-path ([-1, 994, 995]) --found: 2 reads supporting subpath. -the sub-path ([-1, 994, 995]) has PASSED - -Successful extension of 995 to generate path [-1, 994, 995] -updateReadsOfPath: [-1, 994, 995] -read PairPath [_paths=[[994, 995], []]] is consistent with 995 -pct_contained_propagated: 50.0% -995 was added to the queue -QUEUE IS: [AGCCACAGGT...CTTCCTGTGA:W5(V995_717_D1)] - - -#### getAllProbablePaths() The next node in the queue C is 995 - butterfly pct done: 3 / 2 = 150.0% pct done. -ReadsStartingAtV_START_BFLY, Node: 995 read: PairPath [_paths=[[995, -2], []]] -Exploring extension of: 1 paths that end at vertex: 995 - -== Current Paths Constructed Up To Vertex: 995 : -PathPartialReconstruction@[995] : [-1, 994, 995] - -Adding the reads {PairPath [_paths=[[995, -2], []]]=1} to the path [-1, 994, 995] - - -################################################ -###### Exploring extension of v: 995 by successor: -2 -################################################ - - -Count of paths ending at v: 995 = 1 -path_ending_at_v: [-1, 994, 995] - - -# [PathCounter(-2)=0 Examining potential extension of path ending at node V: 995 by successor: -2, via path=[-1, 994, 995] -TripletMapper doesnt contain node: 995 -ReadsOfPathUntilV: PATH: [-1, 994, 995] -ReadsOfPathUntiV: READ: PairPath [_paths=[[994, 995], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[995, -2], []]] -ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 994], []]] --checking if subPath has enough read support. Exploring sub path: [-1, 994, 995, -2] --readsOfPathUntilV: PairPath [_paths=[[994, 995], []]] - -checking if pp: PairPath [_paths=[[994, 995], []]] supports extension of [-1, 994, 995, -2] => false -examining subPath: [-1, 994, 995, -2] for reinforcement by read: [[994, 995], []] :false -the read PairPath [_paths=[[994, 995], []]](2) does not enforce the sub-path ([-1, 994, 995, -2]) --readsOfPathUntilV: PairPath [_paths=[[995, -2], []]] - -checking if pp: PairPath [_paths=[[995, -2], []]] supports extension of [-1, 994, 995, -2] => false -examining subPath: [-1, 994, 995, -2] for reinforcement by read: [[995, -2], []] :false -the read PairPath [_paths=[[995, -2], []]](1) does not enforce the sub-path ([-1, 994, 995, -2]) --readsOfPathUntilV: PairPath [_paths=[[-1, 994], []]] - -checking if pp: PairPath [_paths=[[-1, 994], []]] supports extension of [-1, 994, 995, -2] => false -examining subPath: [-1, 994, 995, -2] for reinforcement by read: [[-1, 994], []] :false -the read PairPath [_paths=[[-1, 994], []]](1) does not enforce the sub-path ([-1, 994, 995, -2]) --found: 0 reads supporting subpath. -the sub-path ([-1, 994, 995, -2]) has NOT PASSED - -Successful extension of -2 to generate path [-1, 994, 995, -2] -updateReadsOfPath: [-1, 994, 995, -2] -read PairPath [_paths=[[995, -2], []]] is consistent with -2 -pct_contained_propagated: 66.66667% --2 was added to the queue -QUEUE IS: [:W-1(V-2_D-1)] - - -#### getAllProbablePaths() The next node in the queue C is -2 - butterfly pct done: 4 / 2 = 200.0% pct done. -ReadsStartingAtV_START_BFLY-2 EMPTY -Exploring extension of: 1 paths that end at vertex: -2 - -== Current Paths Constructed Up To Vertex: -2 : -PathPartialReconstruction@[-2] : [-1, 994, 995, -2] -sequence for path: [-1, 994, 995, -2] is too short: 92 -No paths to pursue. Continue... -SECTION -========= CD-HIT -like Removal of Too-Similar Sequences with Lesser Read Support ========= - - - - -**** CD-HIT style path collapsing at end of run. - - - [0,1] - -**** - -checking twoPathsAreTooSimilar ([-1, 380, 982, 440, 451, 981, 549, 717, -2],[-1, 945, 451, 981, 549, 717, -2]) -**** - - -getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981, 549, 717, -2] Path2: [-1, 945, 451, 981, 549, 717, -2] -key: [-1, 945, 451, 981, 549, 717, -2];[-1, 380, 982, 440, 451, 981, 549, 717, -2], cached as: matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 -the two paths have these stats: numMM=8, max_internal_gap_length=0, identity=97.82%, tooSimilar: false - - -==== -Running PATH alignment of : [-1, 380, 982, 440, 451, 981, 549, 717, -2] to [-1, 945, 451, 981, 549, 717, -2] :: numMM:8, max_internal_gap: 0, path_per_id = 97.82, tooSimilar: false -matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 - - -*** REDUCE: they are PLENTY DIFFERENT *** - - -Grouping paths into genes -Isoform_overlap: Path_i:[-1, 380, 982, 440, 451, 981, 549, 717, -2], Path_j: [-1, 945, 451, 981, 549, 717, -2], overlap = 87.14597% -IsoformEdge linking: [-1, 380, 982, 440, 451, 981, 549, 717, -2] to [-1, 945, 451, 981, 549, 717, -2] -IsoformClustering, number of clusters = 1 -GeneCluster[1] contains: [-1, 945, 451, 981, 549, 717, -2] -GeneCluster[1] contains: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -Sep Gene IDs:{[-1, 945, 451, 981, 549, 717, -2]=1, [-1, 380, 982, 440, 451, 981, 549, 717, -2]=1} -SECTION -====== ## BFLY_EM_REDUCE ## ========== - - -EM on: 2 paths. -// initializing EM (round 0) -Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] -len=367 expr=0.4291335 sum_frags=17.5 -FRAGS_ASSIGNED: [2.0, 50.0%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] -FRAGS_ASSIGNED: [0.5, 50.0%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [3.0, 50.0%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [7.0, 50.0%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] -FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[981, 549], []]] - -Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -len=402 expr=0.57086647 sum_frags=25.5 -FRAGS_ASSIGNED: [2.0, 50.0%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] -FRAGS_ASSIGNED: [0.5, 50.0%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [3.0, 50.0%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [7.0, 50.0%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[981, 549], []]] -FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] - - - -============================================ -EM-round[0] -#### ACCOUNTING FOR EXPR VALUES -expr: 0.4291335 for path: [-1, 945, 451, 981, 549, 717, -2] -expr: 0.57086647 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] - -** Sum expr: 1.0 - - -sum_pp_log_likelihood: -23.833495394134374 for PP: PairPath [_paths=[[549, 717], []]] -sum_pp_log_likelihood: -13.608721939671875 for PP: PairPath [_paths=[[945, 451], []]] -sum_pp_log_likelihood: -13.037947638954698 for PP: PairPath [_paths=[[982, 440, 451], []]] -sum_pp_log_likelihood: -6.518973819477349 for PP: PairPath [_paths=[[-1, 380], []]] -sum_pp_log_likelihood: -5.9583738485335935 for PP: PairPath [_paths=[[717, -2], []]] -sum_pp_log_likelihood: -35.75024309120156 for PP: PairPath [_paths=[[451, 981, 549], []]] -sum_pp_log_likelihood: -13.037947638954698 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -sum_pp_log_likelihood: -11.916747697067187 for PP: PairPath [_paths=[[451, 981], []]] -sum_pp_log_likelihood: -83.4172338794703 for PP: PairPath [_paths=[[549], []]] -sum_pp_log_likelihood: -6.804360969835938 for PP: PairPath [_paths=[[-1, 945], []]] -sum_pp_log_likelihood: -11.916747697067187 for PP: PairPath [_paths=[[981, 549], []]] -sum_pp_log_likelihood: -39.113842916864094 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] - - -============================================ -EM-round[1] -Total frags: 43.0 - -Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] -len=367 expr=0.4291335 sum_frags=15.444872 -FRAGS_ASSIGNED: [1.7165341, 42.913353%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] -FRAGS_ASSIGNED: [0.42913353, 42.913353%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [2.5748012, 42.913353%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [0.85826707, 42.913353%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [6.0078697, 42.913357%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] -FRAGS_ASSIGNED: [0.85826707, 42.913353%] for read: PairPath [_paths=[[981, 549], []]] - -Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -len=402 expr=0.57086647 sum_frags=27.555128 -FRAGS_ASSIGNED: [2.2834659, 57.086647%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] -FRAGS_ASSIGNED: [0.57086647, 57.086647%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [3.4251988, 57.086647%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -FRAGS_ASSIGNED: [1.1417329, 57.086647%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [7.9921303, 57.086647%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.1417329, 57.086647%] for read: PairPath [_paths=[[981, 549], []]] -FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] - -sum_pp_log_likelihood: -23.851084579736636 for PP: PairPath [_paths=[[549, 717], []]] -sum_pp_log_likelihood: -13.858569839950583 for PP: PairPath [_paths=[[945, 451], []]] -sum_pp_log_likelihood: -12.882927091892052 for PP: PairPath [_paths=[[982, 440, 451], []]] -sum_pp_log_likelihood: -6.441463545946026 for PP: PairPath [_paths=[[-1, 380], []]] -sum_pp_log_likelihood: -5.962771144934159 for PP: PairPath [_paths=[[717, -2], []]] -sum_pp_log_likelihood: -35.776626869604954 for PP: PairPath [_paths=[[451, 981, 549], []]] -sum_pp_log_likelihood: -12.882927091892052 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -sum_pp_log_likelihood: -11.925542289868318 for PP: PairPath [_paths=[[451, 981], []]] -sum_pp_log_likelihood: -83.47879602907823 for PP: PairPath [_paths=[[549], []]] -sum_pp_log_likelihood: -6.9292849199752915 for PP: PairPath [_paths=[[-1, 945], []]] -sum_pp_log_likelihood: -11.925542289868318 for PP: PairPath [_paths=[[981, 549], []]] -sum_pp_log_likelihood: -38.64878127567616 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] -EM round[1] Prev: -264.91464, curr: -264.56433, delta: 0.35031128 [seconds: 0] - -#### ACCOUNTING FOR EXPR VALUES -expr: 0.38040692 for path: [-1, 945, 451, 981, 549, 717, -2] -expr: 0.6195931 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] - -** Sum expr: 1.0 - - - - -============================================ -EM-round[2] -Total frags: 43.0 - -Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] -len=367 expr=0.38040692 sum_frags=14.0318 -FRAGS_ASSIGNED: [1.5216277, 38.04069%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] -FRAGS_ASSIGNED: [0.38040692, 38.04069%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [2.2824416, 38.040695%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [0.76081383, 38.04069%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [5.325697, 38.04069%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] -FRAGS_ASSIGNED: [0.76081383, 38.04069%] for read: PairPath [_paths=[[981, 549], []]] - -Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -len=402 expr=0.6195931 sum_frags=28.968197 -FRAGS_ASSIGNED: [2.478372, 61.9593%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] -FRAGS_ASSIGNED: [0.619593, 61.9593%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [3.7175581, 61.9593%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -FRAGS_ASSIGNED: [1.239186, 61.9593%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [8.674302, 61.9593%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.239186, 61.9593%] for read: PairPath [_paths=[[981, 549], []]] -FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] - -sum_pp_log_likelihood: -23.863223915046387 for PP: PairPath [_paths=[[549, 717], []]] -sum_pp_log_likelihood: -14.050471368066567 for PP: PairPath [_paths=[[945, 451], []]] -sum_pp_log_likelihood: -12.782907194791283 for PP: PairPath [_paths=[[982, 440, 451], []]] -sum_pp_log_likelihood: -6.391453597395642 for PP: PairPath [_paths=[[-1, 380], []]] -sum_pp_log_likelihood: -5.965805978761597 for PP: PairPath [_paths=[[717, -2], []]] -sum_pp_log_likelihood: -35.79483587256958 for PP: PairPath [_paths=[[451, 981, 549], []]] -sum_pp_log_likelihood: -12.782907194791283 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -sum_pp_log_likelihood: -11.931611957523193 for PP: PairPath [_paths=[[451, 981], []]] -sum_pp_log_likelihood: -83.52128370266236 for PP: PairPath [_paths=[[549], []]] -sum_pp_log_likelihood: -7.025235684033284 for PP: PairPath [_paths=[[-1, 945], []]] -sum_pp_log_likelihood: -11.931611957523193 for PP: PairPath [_paths=[[981, 549], []]] -sum_pp_log_likelihood: -38.34872158437385 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] -EM round[2] Prev: -264.56433, curr: -264.39005, delta: 0.17428589 [seconds: 0] - -#### ACCOUNTING FOR EXPR VALUES -expr: 0.34665343 for path: [-1, 945, 451, 981, 549, 717, -2] -expr: 0.65334654 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] - -** Sum expr: 1.0 - - - - -============================================ -EM-round[3] -Total frags: 43.0 - -Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] -len=367 expr=0.34665343 sum_frags=13.052951 -FRAGS_ASSIGNED: [1.3866138, 34.665344%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] -FRAGS_ASSIGNED: [0.34665346, 34.665344%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [2.0799208, 34.665344%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [0.6933069, 34.665344%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [4.8531485, 34.665344%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] -FRAGS_ASSIGNED: [0.6933069, 34.665344%] for read: PairPath [_paths=[[981, 549], []]] - -Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -len=402 expr=0.65334654 sum_frags=29.947048 -FRAGS_ASSIGNED: [2.6133862, 65.334656%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] -FRAGS_ASSIGNED: [0.65334654, 65.334656%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [3.9200792, 65.334656%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -FRAGS_ASSIGNED: [1.3066931, 65.334656%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [9.146852, 65.334656%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.3066931, 65.334656%] for read: PairPath [_paths=[[981, 549], []]] -FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] - -sum_pp_log_likelihood: -23.871654349975895 for PP: PairPath [_paths=[[549, 717], []]] -sum_pp_log_likelihood: -14.195095277929715 for PP: PairPath [_paths=[[945, 451], []]] -sum_pp_log_likelihood: -12.71644277516921 for PP: PairPath [_paths=[[982, 440, 451], []]] -sum_pp_log_likelihood: -6.358221387584605 for PP: PairPath [_paths=[[-1, 380], []]] -sum_pp_log_likelihood: -5.967913587493974 for PP: PairPath [_paths=[[717, -2], []]] -sum_pp_log_likelihood: -35.80748152496384 for PP: PairPath [_paths=[[451, 981, 549], []]] -sum_pp_log_likelihood: -12.71644277516921 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -sum_pp_log_likelihood: -11.935827174987947 for PP: PairPath [_paths=[[451, 981], []]] -sum_pp_log_likelihood: -83.55079022491563 for PP: PairPath [_paths=[[549], []]] -sum_pp_log_likelihood: -7.0975476389648575 for PP: PairPath [_paths=[[-1, 945], []]] -sum_pp_log_likelihood: -11.935827174987947 for PP: PairPath [_paths=[[981, 549], []]] -sum_pp_log_likelihood: -38.149328325507625 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] -EM round[3] Prev: -264.39005, curr: -264.30258, delta: 0.08746338 [seconds: 0] - -#### ACCOUNTING FOR EXPR VALUES -expr: 0.3231515 for path: [-1, 945, 451, 981, 549, 717, -2] -expr: 0.67684853 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] - -** Sum expr: 1.0 - - - - -============================================ -EM-round[4] -Total frags: 43.0 - -Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] -len=367 expr=0.3231515 sum_frags=12.371393 -FRAGS_ASSIGNED: [1.292606, 32.31515%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] -FRAGS_ASSIGNED: [0.3231515, 32.31515%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [1.938909, 32.31515%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [0.646303, 32.31515%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [4.524121, 32.31515%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] -FRAGS_ASSIGNED: [0.646303, 32.31515%] for read: PairPath [_paths=[[981, 549], []]] - -Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -len=402 expr=0.67684853 sum_frags=30.628607 -FRAGS_ASSIGNED: [2.7073941, 67.68485%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] -FRAGS_ASSIGNED: [0.67684853, 67.68485%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [4.0610914, 67.68486%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -FRAGS_ASSIGNED: [1.3536971, 67.68485%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [9.47588, 67.68485%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.3536971, 67.68485%] for read: PairPath [_paths=[[981, 549], []]] -FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] - -sum_pp_log_likelihood: -23.87753497919904 for PP: PairPath [_paths=[[549, 717], []]] -sum_pp_log_likelihood: -14.302350298549943 for PP: PairPath [_paths=[[945, 451], []]] -sum_pp_log_likelihood: -12.671435565613965 for PP: PairPath [_paths=[[982, 440, 451], []]] -sum_pp_log_likelihood: -6.335717782806983 for PP: PairPath [_paths=[[-1, 380], []]] -sum_pp_log_likelihood: -5.96938374479976 for PP: PairPath [_paths=[[717, -2], []]] -sum_pp_log_likelihood: -35.81630246879856 for PP: PairPath [_paths=[[451, 981, 549], []]] -sum_pp_log_likelihood: -12.671435565613965 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -sum_pp_log_likelihood: -11.93876748959952 for PP: PairPath [_paths=[[451, 981], []]] -sum_pp_log_likelihood: -83.57137242719665 for PP: PairPath [_paths=[[549], []]] -sum_pp_log_likelihood: -7.151175149274971 for PP: PairPath [_paths=[[-1, 945], []]] -sum_pp_log_likelihood: -11.93876748959952 for PP: PairPath [_paths=[[981, 549], []]] -sum_pp_log_likelihood: -38.0143066968419 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] -EM round[4] Prev: -264.30258, curr: -264.25854, delta: 0.044036865 [seconds: 0] - -#### ACCOUNTING FOR EXPR VALUES -expr: 0.30672878 for path: [-1, 945, 451, 981, 549, 717, -2] -expr: 0.6932712 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] - -** Sum expr: 1.0 - - - - -============================================ -EM-round[5] -Total frags: 43.0 - -Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] -len=367 expr=0.30672878 sum_frags=11.895135 -FRAGS_ASSIGNED: [1.2269151, 30.672878%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] -FRAGS_ASSIGNED: [0.30672878, 30.672878%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [1.8403727, 30.672878%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [0.61345756, 30.672878%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [4.294203, 30.672878%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] -FRAGS_ASSIGNED: [0.61345756, 30.672878%] for read: PairPath [_paths=[[981, 549], []]] - -Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -len=402 expr=0.6932712 sum_frags=31.104862 -FRAGS_ASSIGNED: [2.7730846, 69.32712%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] -FRAGS_ASSIGNED: [0.69327116, 69.32712%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [4.159627, 69.32712%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -FRAGS_ASSIGNED: [1.3865423, 69.32712%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [9.705796, 69.32712%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.3865423, 69.32712%] for read: PairPath [_paths=[[981, 549], []]] -FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] - -sum_pp_log_likelihood: -23.88164963914862 for PP: PairPath [_paths=[[549, 717], []]] -sum_pp_log_likelihood: -14.38086508513366 for PP: PairPath [_paths=[[945, 451], []]] -sum_pp_log_likelihood: -12.640575967216929 for PP: PairPath [_paths=[[982, 440, 451], []]] -sum_pp_log_likelihood: -6.320287983608464 for PP: PairPath [_paths=[[-1, 380], []]] -sum_pp_log_likelihood: -5.970412409787155 for PP: PairPath [_paths=[[717, -2], []]] -sum_pp_log_likelihood: -35.82247445872293 for PP: PairPath [_paths=[[451, 981, 549], []]] -sum_pp_log_likelihood: -12.640575967216929 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -sum_pp_log_likelihood: -11.94082481957431 for PP: PairPath [_paths=[[451, 981], []]] -sum_pp_log_likelihood: -83.58577373702016 for PP: PairPath [_paths=[[549], []]] -sum_pp_log_likelihood: -7.19043254256683 for PP: PairPath [_paths=[[-1, 945], []]] -sum_pp_log_likelihood: -11.94082481957431 for PP: PairPath [_paths=[[981, 549], []]] -sum_pp_log_likelihood: -37.92172790165078 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] -EM round[5] Prev: -264.25854, curr: -264.23642, delta: 0.022125244 [seconds: 0] - -#### ACCOUNTING FOR EXPR VALUES -expr: 0.29522422 for path: [-1, 945, 451, 981, 549, 717, -2] -expr: 0.70477575 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] - -** Sum expr: 1.0 - - - - -============================================ -EM-round[6] -Total frags: 43.0 - -Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] -len=367 expr=0.29522422 sum_frags=11.561502 -FRAGS_ASSIGNED: [1.1808969, 29.522423%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] -FRAGS_ASSIGNED: [0.29522422, 29.522423%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [1.7713454, 29.522423%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [0.59044844, 29.522423%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [4.133139, 29.522423%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] -FRAGS_ASSIGNED: [0.59044844, 29.522423%] for read: PairPath [_paths=[[981, 549], []]] - -Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -len=402 expr=0.70477575 sum_frags=31.438498 -FRAGS_ASSIGNED: [2.819103, 70.47758%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] -FRAGS_ASSIGNED: [0.70477575, 70.47758%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [4.2286544, 70.47758%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -FRAGS_ASSIGNED: [1.4095515, 70.47758%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [9.86686, 70.47758%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.4095515, 70.47758%] for read: PairPath [_paths=[[981, 549], []]] -FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] - -sum_pp_log_likelihood: -23.88453453877154 for PP: PairPath [_paths=[[549, 717], []]] -sum_pp_log_likelihood: -14.437762328772989 for PP: PairPath [_paths=[[945, 451], []]] -sum_pp_log_likelihood: -12.619238094761245 for PP: PairPath [_paths=[[982, 440, 451], []]] -sum_pp_log_likelihood: -6.309619047380623 for PP: PairPath [_paths=[[-1, 380], []]] -sum_pp_log_likelihood: -5.971133634692885 for PP: PairPath [_paths=[[717, -2], []]] -sum_pp_log_likelihood: -35.82680180815731 for PP: PairPath [_paths=[[451, 981, 549], []]] -sum_pp_log_likelihood: -12.619238094761245 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -sum_pp_log_likelihood: -11.94226726938577 for PP: PairPath [_paths=[[451, 981], []]] -sum_pp_log_likelihood: -83.59587088570039 for PP: PairPath [_paths=[[549], []]] -sum_pp_log_likelihood: -7.218881164386494 for PP: PairPath [_paths=[[-1, 945], []]] -sum_pp_log_likelihood: -11.94226726938577 for PP: PairPath [_paths=[[981, 549], []]] -sum_pp_log_likelihood: -37.85771428428374 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] -EM round[6] Prev: -264.23642, curr: -264.22534, delta: 0.011077881 [seconds: 0] - -#### ACCOUNTING FOR EXPR VALUES -expr: 0.28715086 for path: [-1, 945, 451, 981, 549, 717, -2] -expr: 0.71284914 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] - -** Sum expr: 1.0 - - - - -============================================ -EM-round[7] -Total frags: 43.000004 - -Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] -len=367 expr=0.28715086 sum_frags=11.327374 -FRAGS_ASSIGNED: [1.1486034, 28.715086%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] -FRAGS_ASSIGNED: [0.28715086, 28.715086%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [1.7229052, 28.715086%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [0.5743017, 28.715086%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [4.020112, 28.715086%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] -FRAGS_ASSIGNED: [0.5743017, 28.715086%] for read: PairPath [_paths=[[981, 549], []]] - -Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -len=402 expr=0.71284914 sum_frags=31.672628 -FRAGS_ASSIGNED: [2.8513968, 71.28492%] for read: PairPath [_paths=[[549, 717], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] -FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] -FRAGS_ASSIGNED: [0.7128492, 71.28492%] for read: PairPath [_paths=[[717, -2], []]] -FRAGS_ASSIGNED: [4.2770953, 71.28492%] for read: PairPath [_paths=[[451, 981, 549], []]] -FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -FRAGS_ASSIGNED: [1.4256984, 71.28492%] for read: PairPath [_paths=[[451, 981], []]] -FRAGS_ASSIGNED: [9.979889, 71.28492%] for read: PairPath [_paths=[[549], []]] -FRAGS_ASSIGNED: [1.4256984, 71.28492%] for read: PairPath [_paths=[[981, 549], []]] -FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] - -sum_pp_log_likelihood: -23.88656024720119 for PP: PairPath [_paths=[[549, 717], []]] -sum_pp_log_likelihood: -14.47867955886598 for PP: PairPath [_paths=[[945, 451], []]] -sum_pp_log_likelihood: -12.604398963940202 for PP: PairPath [_paths=[[982, 440, 451], []]] -sum_pp_log_likelihood: -6.302199481970101 for PP: PairPath [_paths=[[-1, 380], []]] -sum_pp_log_likelihood: -5.971640061800297 for PP: PairPath [_paths=[[717, -2], []]] -sum_pp_log_likelihood: -35.82984037080178 for PP: PairPath [_paths=[[451, 981, 549], []]] -sum_pp_log_likelihood: -12.604398963940202 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] -sum_pp_log_likelihood: -11.943280123600594 for PP: PairPath [_paths=[[451, 981], []]] -sum_pp_log_likelihood: -83.60296086520415 for PP: PairPath [_paths=[[549], []]] -sum_pp_log_likelihood: -7.23933977943299 for PP: PairPath [_paths=[[-1, 945], []]] -sum_pp_log_likelihood: -11.943280123600594 for PP: PairPath [_paths=[[981, 549], []]] -sum_pp_log_likelihood: -37.81319689182061 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] -EM round[7] Prev: -264.22534, curr: -264.2198, delta: 0.005554199 [seconds: 0] - -#### ACCOUNTING FOR EXPR VALUES -expr: 0.28147835 for path: [-1, 945, 451, 981, 549, 717, -2] -expr: 0.71852165 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] - -** Sum expr: 1.0 - - -Expression values for each candidate path: -Expr=0.7185216546058655, sum_exp_frags=31.67262840270996, path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -Expr=0.2814783453941345, sum_exp_frags=11.327374458312988, path: [-1, 945, 451, 981, 549, 717, -2] -Keeping TOP isoform: [-1, 380, 982, 440, 451, 981, 549, 717, -2] as having _highest_ expr=0.71852165 and 100.0% dom. iso expr for gene. -Keeping isoform: [-1, 945, 451, 981, 549, 717, -2] as having expr=0.28147835 and 39.17465% dom. iso expr for gene. -EM_REDUCE retaining: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -EM_REDUCE retaining: [-1, 945, 451, 981, 549, 717, -2] -FinalPath@AfterFiltering: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -FinalPath@AfterFiltering: [-1, 945, 451, 981, 549, 717, -2] -Final Paths: 2 - -Final path reported: c1_g1_i1 len=402 path=[380:0-58 982:59-82 440:83-93 451:94-167 981:168-191 549:192-359 717:360-401] [-1, 380, 982, 440, 451, 981, 549, 717, -2] - -Final path reported: c1_g1_i2 len=367 path=[945:0-58 451:59-132 981:133-156 549:157-324 717:325-366] [-1, 945, 451, 981, 549, 717, -2] -total number of paths reported = 2 from 2 components -Done -make[1]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg' for target in Inchworm Chrysalis; do dh_auto_install \ --sourcedirectory=${target} --builddirectory=${target}_build; done - cd Inchworm_build && make -j40 install DESTDIR=/build/reproducible-path/trinityrnaseq-2.15.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd Inchworm_build && make -j42 install DESTDIR=/build/reproducible-path/trinityrnaseq-2.15.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' /usr/bin/cmake -S/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm -B/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -13120,7 +3573,7 @@ -- Installing: /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/debian/tmp/usr/bin/FastaToDeBruijn -- Installing: /build/reproducible-path/trinityrnaseq-2.15.2+dfsg/debian/tmp/usr/bin/fastaToKmerCoverageStats make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Inchworm_build' - cd Chrysalis_build && make -j40 install DESTDIR=/build/reproducible-path/trinityrnaseq-2.15.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd Chrysalis_build && make -j42 install DESTDIR=/build/reproducible-path/trinityrnaseq-2.15.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' /usr/bin/cmake -S/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis -B/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -13139,7 +3592,7 @@ make[2]: Leaving directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/Chrysalis_build' for target in trinity-plugins/slclust trinity-plugins/scaffold_iworm_contigs trinity-plugins/bamsifter trinity-plugins/seqtk-trinity; do dh_auto_install \ --sourcedirectory=${target}; done - cd trinity-plugins/slclust && make -j40 install DESTDIR=/build/reproducible-path/trinityrnaseq-2.15.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd trinity-plugins/slclust && make -j42 install DESTDIR=/build/reproducible-path/trinityrnaseq-2.15.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/trinityrnaseq-2.15.2+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ @@ -13205,12 +3658,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3219644/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3219644/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1554762 and its subdirectories -I: Current time: Fri Nov 7 23:54:52 -12 2025 -I: pbuilder-time-stamp: 1762602892 +I: removing directory /srv/workspace/pbuilder/3219644 and its subdirectories +I: Current time: Sat Dec 12 08:22:50 +14 2026 +I: pbuilder-time-stamp: 1797013370