Diff of the two buildlogs: -- --- b1/build.log 2024-11-12 10:10:47.417758468 +0000 +++ b2/build.log 2024-11-12 10:33:50.272419111 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Nov 11 21:21:16 -12 2024 -I: pbuilder-time-stamp: 1731403276 +I: Current time: Tue Dec 16 06:33:49 +14 2025 +I: pbuilder-time-stamp: 1765816429 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -50,52 +50,84 @@ dpkg-source: info: applying no_pkg_resources.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4161091/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1987040/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 15 16:33 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1987040/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1987040/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='7cce605ebfd24954a0a9f8bac6e6d141' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4161091' - PS1='# ' - PS2='> ' + INVOCATION_ID=cfbebd653f584ff3a1e60f5da52e65c6 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1987040 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/pbuilderrc_wWq3 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/b1 --logfile b1/build.log snakemake_7.32.4-6.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/pbuilderrc_5Jni --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/b2 --logfile b2/build.log snakemake_7.32.4-6.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4161091/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1987040/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -629,7 +661,7 @@ Get: 394 http://deb.debian.org/debian unstable/main amd64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get: 395 http://deb.debian.org/debian unstable/main amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 396 http://deb.debian.org/debian unstable/main amd64 stress amd64 1.0.7-1 [21.9 kB] -Fetched 239 MB in 9s (26.3 MB/s) +Fetched 239 MB in 8s (28.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -1894,8 +1926,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Nov 12 09:27:17 UTC 2024. -Universal Time is now: Tue Nov 12 09:27:17 UTC 2024. +Local time is now: Mon Dec 15 16:34:47 UTC 2025. +Universal Time is now: Mon Dec 15 16:34:47 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up liberror-perl (0.17029-2) ... @@ -2298,7 +2330,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/snakemake-7.32.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snakemake_7.32.4-6_source.changes +I: user script /srv/workspace/pbuilder/1987040/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1987040/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/snakemake-7.32.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../snakemake_7.32.4-6_source.changes dpkg-buildpackage: info: source package snakemake dpkg-buildpackage: info: source version 7.32.4-6 dpkg-buildpackage: info: source distribution unstable @@ -2328,142 +2364,142 @@ running build running build_py creating build/lib/snakemake +copying snakemake/interfaces.py -> build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake -copying snakemake/__init__.py -> build/lib/snakemake -copying snakemake/stats.py -> build/lib/snakemake -copying snakemake/checkpoints.py -> build/lib/snakemake -copying snakemake/modules.py -> build/lib/snakemake -copying snakemake/sourcecache.py -> build/lib/snakemake -copying snakemake/benchmark.py -> build/lib/snakemake -copying snakemake/jobs.py -> build/lib/snakemake -copying snakemake/ruleinfo.py -> build/lib/snakemake -copying snakemake/_version.py -> build/lib/snakemake +copying snakemake/io.py -> build/lib/snakemake +copying snakemake/target_jobs.py -> build/lib/snakemake +copying snakemake/path_modifier.py -> build/lib/snakemake +copying snakemake/script.py -> build/lib/snakemake +copying snakemake/logging.py -> build/lib/snakemake +copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake +copying snakemake/decorators.py -> build/lib/snakemake +copying snakemake/utils.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake +copying snakemake/gui.py -> build/lib/snakemake +copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake +copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake -copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake -copying snakemake/decorators.py -> build/lib/snakemake -copying snakemake/io.py -> build/lib/snakemake -copying snakemake/notebook.py -> build/lib/snakemake +copying snakemake/output_index.py -> build/lib/snakemake +copying snakemake/_version.py -> build/lib/snakemake +copying snakemake/__init__.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake +copying snakemake/notebook.py -> build/lib/snakemake +copying snakemake/exceptions.py -> build/lib/snakemake +copying snakemake/benchmark.py -> build/lib/snakemake +copying snakemake/shell.py -> build/lib/snakemake +copying snakemake/checkpoints.py -> build/lib/snakemake +copying snakemake/stats.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake -copying snakemake/__main__.py -> build/lib/snakemake -copying snakemake/interfaces.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake -copying snakemake/output_index.py -> build/lib/snakemake -copying snakemake/logging.py -> build/lib/snakemake -copying snakemake/target_jobs.py -> build/lib/snakemake -copying snakemake/utils.py -> build/lib/snakemake -copying snakemake/cwl.py -> build/lib/snakemake -copying snakemake/script.py -> build/lib/snakemake -copying snakemake/gui.py -> build/lib/snakemake -copying snakemake/shell.py -> build/lib/snakemake -copying snakemake/exceptions.py -> build/lib/snakemake +copying snakemake/modules.py -> build/lib/snakemake +copying snakemake/sourcecache.py -> build/lib/snakemake +copying snakemake/jobs.py -> build/lib/snakemake +creating build/lib/snakemake/template_rendering +copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering +copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering +copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering +creating build/lib/snakemake/executors +copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors +copying snakemake/executors/common.py -> build/lib/snakemake/executors +copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors +copying snakemake/executors/__init__.py -> build/lib/snakemake/executors +copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors +copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors +copying snakemake/executors/flux.py -> build/lib/snakemake/executors creating build/lib/snakemake/linting -copying snakemake/linting/__init__.py -> build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting -copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting +copying snakemake/linting/__init__.py -> build/lib/snakemake/linting +copying snakemake/linting/rules.py -> build/lib/snakemake/linting +creating build/lib/snakemake/deployment +copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment +copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment +copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment +copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment +copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment +creating build/lib/snakemake/unit_tests +copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests +creating build/lib/snakemake/common +copying snakemake/common/tbdstring.py -> build/lib/snakemake/common +copying snakemake/common/__init__.py -> build/lib/snakemake/common +creating build/lib/snakemake/caching +copying snakemake/caching/local.py -> build/lib/snakemake/caching +copying snakemake/caching/__init__.py -> build/lib/snakemake/caching +copying snakemake/caching/remote.py -> build/lib/snakemake/caching +copying snakemake/caching/hash.py -> build/lib/snakemake/caching +creating build/lib/snakemake/report +copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report +copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/remote -copying snakemake/remote/__init__.py -> build/lib/snakemake/remote -copying snakemake/remote/EGA.py -> build/lib/snakemake/remote -copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote +copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote -copying snakemake/remote/GS.py -> build/lib/snakemake/remote -copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote +copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote -copying snakemake/remote/FTP.py -> build/lib/snakemake/remote +copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote +copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote +copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote +copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote -copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote -copying snakemake/remote/S3.py -> build/lib/snakemake/remote +copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote +copying snakemake/remote/__init__.py -> build/lib/snakemake/remote +copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote -copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote -creating build/lib/snakemake/executors -copying snakemake/executors/__init__.py -> build/lib/snakemake/executors -copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors -copying snakemake/executors/flux.py -> build/lib/snakemake/executors -copying snakemake/executors/common.py -> build/lib/snakemake/executors -copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors -copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors -copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors -creating build/lib/snakemake/report -copying snakemake/report/__init__.py -> build/lib/snakemake/report -copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report -creating build/lib/snakemake/unit_tests -copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests -creating build/lib/snakemake/common -copying snakemake/common/__init__.py -> build/lib/snakemake/common -copying snakemake/common/tbdstring.py -> build/lib/snakemake/common -creating build/lib/snakemake/caching -copying snakemake/caching/__init__.py -> build/lib/snakemake/caching -copying snakemake/caching/local.py -> build/lib/snakemake/caching -copying snakemake/caching/hash.py -> build/lib/snakemake/caching -copying snakemake/caching/remote.py -> build/lib/snakemake/caching -creating build/lib/snakemake/deployment -copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment -copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment -copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment -copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment -copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment -creating build/lib/snakemake/template_rendering -copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering -copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering -copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm +creating build/lib/snakemake/unit_tests/templates +copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates creating build/lib/snakemake/report/data +copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data +copying snakemake/report/data/common.py -> build/lib/snakemake/report/data +copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data +copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data +copying snakemake/report/data/results.py -> build/lib/snakemake/report/data copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data -copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data -copying snakemake/report/data/common.py -> build/lib/snakemake/report/data copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data -copying snakemake/report/data/results.py -> build/lib/snakemake/report/data -copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data -copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data creating build/lib/snakemake/report/template copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template creating build/lib/snakemake/report/template/components copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components -creating build/lib/snakemake/unit_tests/templates -copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors +copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates +copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/report/template/style.css -> build/lib/snakemake/report/template copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template -copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components -copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates -copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates +copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '7.32.4' installing to build/bdist.linux-x86_64/wheel @@ -2471,142 +2507,142 @@ running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/snakemake +creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering +copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/./snakemake/template_rendering +copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/template_rendering +copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/./snakemake/template_rendering +copying build/lib/snakemake/interfaces.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/stats.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/./snakemake -creating build/bdist.linux-x86_64/wheel/snakemake/linting -copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting -copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting -copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting -copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting -copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/./snakemake -creating build/bdist.linux-x86_64/wheel/snakemake/remote -copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote -copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/executors -copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors -copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/./snakemake/executors copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors -copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors +copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/./snakemake/executors copying build/lib/snakemake/executors/common.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors creating build/bdist.linux-x86_64/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors/slurm -copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors -copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors copying build/lib/snakemake/executors/azure_batch.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors +copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors +copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors +copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors +copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors +copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/script.py -> build/bdist.linux-x86_64/wheel/./snakemake +creating build/bdist.linux-x86_64/wheel/snakemake/linting +copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting +copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting +copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting +copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting +copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/./snakemake +creating build/bdist.linux-x86_64/wheel/snakemake/deployment +copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment +copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment +copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment +copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment +copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment +creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests +copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests +creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates +copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests/templates +copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests/templates +copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests/templates +copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/./snakemake +creating build/bdist.linux-x86_64/wheel/snakemake/common +copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/./snakemake/common +copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/common +copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake +creating build/bdist.linux-x86_64/wheel/snakemake/caching +copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching +copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching +copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching +copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching +copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/report -copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report -copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/./snakemake/report creating build/bdist.linux-x86_64/wheel/snakemake/report/data +copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data +copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data +copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data +copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data +copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data -copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data -copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data -copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data -copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data -copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data creating build/bdist.linux-x86_64/wheel/snakemake/report/template -copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/template +copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-x86_64/wheel/./snakemake/report/template copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-x86_64/wheel/./snakemake/report/template -copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/./snakemake/report/template creating build/bdist.linux-x86_64/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-x86_64/wheel/./snakemake/report/template -copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/./snakemake -creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests -copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests -creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates -copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests/templates -copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests/templates -copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests/templates -copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/template +copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/./snakemake/report/template +copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/./snakemake/report +copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/stats.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/interfaces.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/./snakemake -creating build/bdist.linux-x86_64/wheel/snakemake/common -copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/common -copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/./snakemake/common -copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/./snakemake -creating build/bdist.linux-x86_64/wheel/snakemake/caching -copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching -copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching -copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching -copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching -copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/script.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/./snakemake -creating build/bdist.linux-x86_64/wheel/snakemake/deployment -copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment -copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment -copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment -copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment -copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment -copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/./snakemake -copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/./snakemake -creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering -copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/template_rendering -copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/./snakemake/template_rendering -copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/./snakemake/template_rendering -copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/./snakemake +creating build/bdist.linux-x86_64/wheel/snakemake/remote +copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote +copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/./snakemake +copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/./snakemake running install_egg_info running egg_info creating snakemake.egg-info @@ -2624,7 +2660,7 @@ Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/./snakemake-7.32.4.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/snakemake-7.32.4.dist-info/WHEEL -creating '/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/.tmp-98fnzvxj/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/.tmp-x10c20i9/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' @@ -3056,7 +3092,7 @@ cachedir: .pytest_cache rootdir: /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build configfile: pyproject.toml -plugins: typeguard-4.4.1, mock-3.14.0, requests_mock-1.12.1 +plugins: requests_mock-1.12.1, typeguard-4.4.1, mock-3.14.0 collecting ... collected 395 items / 92 deselected / 303 selected .pybuild/cpython3_3.12_snakemake/build/tests/test_expand.py::test_simple_expand PASSED [ 0%] @@ -3071,34 +3107,34 @@ 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+.pybuild/cpython3_3.12_snakemake/build/tests/test_linting.py::test_lint[tab_usage-positive] SKIPPED [ 12%] +.pybuild/cpython3_3.12_snakemake/build/tests/test_linting.py::test_lint[tab_usage-negative] SKIPPED [ 12%] +.pybuild/cpython3_3.12_snakemake/build/tests/test_linting.py::test_lint[mixed_func_and_rules-positive] SKIPPED [ 12%] +.pybuild/cpython3_3.12_snakemake/build/tests/test_linting.py::test_lint[mixed_func_and_rules-negative] SKIPPED [ 13%] .pybuild/cpython3_3.12_snakemake/build/tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 13%] .pybuild/cpython3_3.12_snakemake/build/tests/test_schema.py::test_config PASSED [ 13%] .pybuild/cpython3_3.12_snakemake/build/tests/test_schema.py::test_config_ref PASSED [ 14%] @@ -3131,146 +3167,8 @@ .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test11 PASSED [ 23%] .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test12 PASSED [ 23%] .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test13 PASSED [ 23%] -.pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test14 Timeout (0:01:00)! -Thread 0x00007f1081ddf6c0 (most recent call first): - File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker - File "/usr/lib/python3.12/threading.py", line 1012 in run - File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner - File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap - -Thread 0x00007f10825e06c0 (most recent call first): - File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker - File "/usr/lib/python3.12/threading.py", line 1012 in run - File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner - File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap - -Thread 0x00007f1082de16c0 (most recent call first): - File "/usr/lib/python3.12/selectors.py", line 468 in select - File "/usr/lib/python3.12/asyncio/base_events.py", line 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File "/usr/lib/python3.12/threading.py", line 1012 in run + File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner + File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap + +Thread 0x00007f6a7150a080 (most recent call first): File "/usr/lib/python3.12/threading.py", line 355 in wait File "/usr/lib/python3.12/threading.py", line 507 in acquire File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/scheduler.py", line 546 in schedule @@ -3624,20 +3546,35 @@ .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test_checkpoint_allowed_rules PASSED [ 86%] .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 87%] .pybuild/cpython3_3.12_snakemake/build/tests/tests.py::test_issue1331 Timeout (0:01:00)! -Thread 0x00007f1069ffb6c0 (most recent call first): - File "/usr/lib/python3.12/threading.py", line 359 in wait - File "/usr/lib/python3.12/threading.py", line 655 in wait - File 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92 in _worker + File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f1028ff96c0 (most recent call first): - File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker +Thread 0x00007f6a56a006c0 (most recent call first): + File "/usr/lib/python3.12/subprocess.py", line 2011 in _try_wait + File "/usr/lib/python3.12/subprocess.py", line 2053 in _wait + File "/usr/lib/python3.12/subprocess.py", line 1264 in wait + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/shell.py", line 284 in __new__ + File "/tmp/snakemake-ae18tgwn/Snakefile", line 34 in __rule_trimming + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 2656 in run_wrapper + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 699 in cached_or_run + File "/usr/lib/python3.12/concurrent/futures/thread.py", line 58 in run + File "/usr/lib/python3.12/concurrent/futures/thread.py", line 92 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f100affd6c0 (most recent call first): +Thread 0x00007f6a3fe006c0 (most recent call first): File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 679 in run_group_job File "/usr/lib/python3.12/concurrent/futures/thread.py", line 58 in run File "/usr/lib/python3.12/concurrent/futures/thread.py", line 92 in _worker @@ -3645,12 +3582,12 @@ File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f1029ffb6c0 (most recent call first): +Thread 0x00007f6a33e006c0 (most recent call first): File "/usr/lib/python3.12/subprocess.py", line 2011 in _try_wait File "/usr/lib/python3.12/subprocess.py", line 2053 in _wait File "/usr/lib/python3.12/subprocess.py", line 1264 in wait File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/shell.py", line 284 in __new__ - File "/tmp/snakemake-a_yh5773/Snakefile", line 56 in __rule_align + File "/tmp/snakemake-ae18tgwn/Snakefile", line 56 in __rule_align File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 2656 in run_wrapper File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 699 in cached_or_run File "/usr/lib/python3.12/concurrent/futures/thread.py", line 58 in run @@ -3659,12 +3596,12 @@ File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f106bfff6c0 (most recent call first): +Thread 0x00007f6a3e0006c0 (most recent call first): File "/usr/lib/python3.12/subprocess.py", line 2011 in _try_wait File "/usr/lib/python3.12/subprocess.py", line 2053 in _wait File "/usr/lib/python3.12/subprocess.py", line 1264 in wait File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/shell.py", line 284 in __new__ - File "/tmp/snakemake-a_yh5773/Snakefile", line 76 in __rule_sort + File "/tmp/snakemake-ae18tgwn/Snakefile", line 34 in __rule_trimming File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 2656 in run_wrapper File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 699 in cached_or_run File "/usr/lib/python3.12/concurrent/futures/thread.py", line 58 in run @@ -3673,121 +3610,134 @@ File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f1082de16c0 (most recent call first): +Thread 0x00007f6a3d6006c0 (most recent call first): + File "/usr/lib/python3.12/threading.py", line 359 in wait + File "/usr/lib/python3.12/threading.py", line 655 in wait + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/benchmark.py", line 184 in run + File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner + File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap + +Thread 0x00007f6a334006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f102affd6c0 (most recent call first): +Thread 0x00007f6a3ea006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f102a7fc6c0 (most recent call first): +Thread 0x00007f6a556006c0 (most recent call first): + File "/usr/lib/python3.12/selectors.py", line 468 in select + File "/usr/lib/python3.12/asyncio/base_events.py", line 1954 in _run_once + File "/usr/lib/python3.12/asyncio/base_events.py", line 640 in run_forever + File "/usr/lib/python3.12/asyncio/base_events.py", line 673 in run_until_complete + File "/usr/lib/python3.12/asyncio/runners.py", line 118 in run + File "/usr/lib/python3.12/asyncio/runners.py", line 194 in run + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 886 in _wait_thread + File "/usr/lib/python3.12/threading.py", line 1012 in run + File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner + File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap + +Thread 0x00007f6a4a0006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f102b7fe6c0 (most recent call first): +Thread 0x00007f6a48c006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f102bfff6c0 (most recent call first): +Thread 0x00007f6a496006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f104e7fc6c0 (most recent call first): - File "/usr/lib/python3.12/selectors.py", line 468 in select - File "/usr/lib/python3.12/asyncio/base_events.py", line 1954 in _run_once - File "/usr/lib/python3.12/asyncio/base_events.py", line 640 in run_forever - File "/usr/lib/python3.12/asyncio/base_events.py", line 673 in run_until_complete - File "/usr/lib/python3.12/asyncio/runners.py", line 118 in run - File "/usr/lib/python3.12/asyncio/runners.py", line 194 in run - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/executors/__init__.py", line 886 in _wait_thread +Thread 0x00007f6a4b4006c0 (most recent call first): + File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f104f7fe6c0 (most recent call first): +Thread 0x00007f6a4aa006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f104dffb6c0 (most recent call first): +Thread 0x00007f6a54c006c0 (most recent call first): File 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1032 in _bootstrap -Thread 0x00007f1068bf86c0 (most recent call first): +Thread 0x00007f6a616006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f104ffff6c0 (most recent call first): +Thread 0x00007f6a560006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f106b0fd6c0 (most recent call first): +Thread 0x00007f6a574006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f106a7fc6c0 (most recent call first): +Thread 0x00007f6a62a006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f1080adc6c0 (most recent call first): +Thread 0x00007f6a634006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f10812dd6c0 (most recent call first): +Thread 0x00007f6a63e006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f1081ddf6c0 (most recent call first): +Thread 0x00007f6a68c006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f10825e06c0 (most recent call first): +Thread 0x00007f6a696006c0 (most recent call first): File "/usr/lib/python3.12/concurrent/futures/thread.py", line 89 in _worker File "/usr/lib/python3.12/threading.py", line 1012 in run File "/usr/lib/python3.12/threading.py", line 1075 in _bootstrap_inner File "/usr/lib/python3.12/threading.py", line 1032 in _bootstrap -Thread 0x00007f108a673080 (most recent call first): +Thread 0x00007f6a7150a080 (most recent call first): File "/usr/lib/python3.12/threading.py", line 355 in wait File "/usr/lib/python3.12/threading.py", line 507 in acquire File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/scheduler.py", line 546 in schedule @@ -3882,11 +3832,10 @@ warnings.warn( tests/tests.py::test_glpk_solver - :888: DeprecationWarning: This process (pid=59705) is multi-threaded, use of fork() may lead to deadlocks in the child. + :888: DeprecationWarning: This process (pid=2019214) is multi-threaded, use of fork() may lead to deadlocks in the child. -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 256 passed, 46 skipped, 92 deselected, 1 xfailed, 21 warnings in 1857.98s (0:30:57) = -cannot schedule new futures after shutdown += 256 passed, 46 skipped, 92 deselected, 1 xfailed, 21 warnings in 1184.64s (0:19:44) = I: pybuild pybuild:334: rm -fr /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/bin /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/tests make[1]: Leaving directory '/build/reproducible-path/snakemake-7.32.4' create-stamp debian/debhelper-build-stamp @@ -3918,8 +3867,8 @@ dpkg-gencontrol: warning: package snakemake-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'snakemake-doc' in '../snakemake-doc_7.32.4-6_all.deb'. dpkg-deb: building package 'snakemake' in '../snakemake_7.32.4-6_all.deb'. +dpkg-deb: building package 'snakemake-doc' in '../snakemake-doc_7.32.4-6_all.deb'. dpkg-genbuildinfo --build=binary -O../snakemake_7.32.4-6_amd64.buildinfo dpkg-genchanges --build=binary -O../snakemake_7.32.4-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3927,24 +3876,26 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1987040/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1987040/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem W: Stray processes left from build: -* system-pbuilder-build-snakemake_7.32.4\x2d6-4161091.slice - Slice /system/pbuilder/build/snakemake_7.32.4-6/4161091 +* system-pbuilder-build-snakemake_7.32.4\x2d6-1987040.slice - Slice /system/pbuilder/build/snakemake_7.32.4-6/1987040 Loaded: loaded - Active: active since Mon 2024-11-11 21:21:31 -12; 49min ago + Active: active since Tue 2025-12-16 06:33:56 +14; 22min ago Tasks: 1 Memory: 1.6G - CPU: 10min 49.736s - CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-snakemake_7.32.4\x2d6.slice/system-pbuilder-build-snakemake_7.32.4\x2d6-4161091.slice - `-run-ra4f0862176464d168bd18701fbc3083c.scope - `-153942 /usr/bin/bash -c "set -euo pipefail; grep 1 < test.1.txt > test.1.out" + CPU: 5min 16.798s + CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-snakemake_7.32.4\x2d6.slice/system-pbuilder-build-snakemake_7.32.4\x2d6-1987040.slice + `-run-rc769f4d7ddc243c9beab54bbe41b7c84.scope + `-2287094 /usr/bin/bash -c "set -euo pipefail; grep 1 < test.1.txt > test.1.out" -Nov 11 21:21:31 ionos11-amd64 systemd[1]: Created slice system-pbuilder-build-snakemake_7.32.4\x2d6-4161091.slice - Slice /system/pbuilder/build/snakemake_7.32.4-6/4161091. +Dec 16 06:33:56 ionos15-amd64 systemd[1]: Created slice system-pbuilder-build-snakemake_7.32.4\x2d6-1987040.slice - Slice /system/pbuilder/build/snakemake_7.32.4-6/1987040. I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4161091 and its subdirectories -I: Current time: Mon Nov 11 22:10:46 -12 2024 -I: pbuilder-time-stamp: 1731406246 +I: removing directory /srv/workspace/pbuilder/1987040 and its subdirectories +I: Current time: Tue Dec 16 06:56:49 +14 2025 +I: pbuilder-time-stamp: 1765817809