Diff of the two buildlogs: -- --- b1/build.log 2024-10-30 05:24:31.427283825 +0000 +++ b2/build.log 2024-10-30 05:30:08.383327996 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Dec 1 23:45:10 -12 2025 -I: pbuilder-time-stamp: 1764675910 +I: Current time: Wed Oct 30 19:24:34 +14 2024 +I: pbuilder-time-stamp: 1730265874 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying adjust-to-external-Chemistry-OpenSMILES.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3733614/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1400165/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 30 05:24 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1400165/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1400165/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='c36438f98e564810921e1c9adfe6766b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3733614' - PS1='# ' - PS2='> ' + INVOCATION_ID=ef0ce10f3b794dc0be1a170853e6f6e4 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1400165 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1SAkMb6O/pbuilderrc_rj0y --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1SAkMb6O/b1 --logfile b1/build.log smiles-scripts_0.2.0+dfsg1-6.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1SAkMb6O/pbuilderrc_yZ6T --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1SAkMb6O/b2 --logfile b2/build.log smiles-scripts_0.2.0+dfsg1-6.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3733614/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1400165/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -510,7 +542,7 @@ Get: 352 http://deb.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b1 [314 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 mkdepend all 0.0~svn45-3 [7172 B] Get: 354 http://deb.debian.org/debian unstable/main amd64 subversion amd64 1.14.4-2 [961 kB] -Fetched 285 MB in 24s (11.9 MB/s) +Fetched 285 MB in 41s (6891 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -2161,7 +2193,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/smiles-scripts-0.2.0+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../smiles-scripts_0.2.0+dfsg1-6_source.changes +I: user script /srv/workspace/pbuilder/1400165/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1400165/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/smiles-scripts-0.2.0+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../smiles-scripts_0.2.0+dfsg1-6_source.changes dpkg-buildpackage: info: source package smiles-scripts dpkg-buildpackage: info: source version 0.2.0+dfsg1-6 dpkg-buildpackage: info: source distribution unstable @@ -2171,7 +2207,7 @@ debian/rules clean dh clean dh_auto_clean - make -j42 distclean + make -j20 distclean make[1]: Entering directory '/build/reproducible-path/smiles-scripts-0.2.0+dfsg1' find: 'externals': No such file or directory find: 'externals': No such file or directory @@ -2192,20 +2228,20 @@ find: 'externals': No such file or directory find: 'externals': No such file or directory rm -f tests/outputs/cdkcif2smiles_001.diff tests/outputs/cdkcif2smiles_002.diff tests/outputs/cdkcif2smiles_003.diff tests/outputs/cdkcif2xyz_001.diff tests/outputs/cdkcif2xyz_002.diff tests/outputs/cdkcif2xyz_003.diff tests/outputs/cdkdepict-cgi_001.diff tests/outputs/cdkdepict-cgi_002.diff tests/outputs/cdkdepict_001.diff tests/outputs/cdkdepict_002.diff tests/outputs/cdkdepict_003.diff tests/outputs/cdkdepict_004.diff tests/outputs/cdkdepict_005.diff tests/outputs/cdkdepict_006.diff tests/outputs/cdkdepict_007.diff tests/outputs/cdkdepict_008.diff tests/outputs/cdkdepict_009.diff tests/outputs/cdkdepict_010.diff tests/outputs/cdkdepict_021.diff tests/outputs/cdkdepict_022.diff tests/outputs/cdkdepict_023.diff tests/outputs/cdkrecharge_001.diff tests/outputs/cdkrecharge_002.diff tests/outputs/cdkrecharge_003.diff tests/outputs/cdkrecharge_004.diff tests/outputs/cdkrecharge_005.diff tests/outputs/cdkrecharge_006.diff tests/outputs/cdkrecharge_007.diff tests/outputs/cdkrecharge_008.diff tests/outputs/cdkrecharge_009.diff tests/outputs/cdkrecharge_010.diff tests/outputs/cdkrecharge_011.diff tests/outputs/cdkrecharge_012.diff tests/outputs/cdkrecharge_013.diff tests/outputs/cdkrecharge_014.diff tests/outputs/cdkrecharge_015.diff tests/outputs/cdkrecharge_016.diff tests/outputs/cdkrecharge_017.diff tests/outputs/cdkrecharge_018.diff tests/outputs/cdkrecharge_019.diff tests/outputs/cdkrecharge_020.diff tests/outputs/cdksdf2smiles_001.diff tests/outputs/cdksdf2smiles_002.diff tests/outputs/cdksdf2smiles_003.diff tests/outputs/cdksdf2smiles_004.diff tests/outputs/cdksdf2smiles_005.diff tests/outputs/cdksdf2smiles_006.diff tests/outputs/cdksdf2smiles_007.diff tests/outputs/cdksdf2smiles_008.diff tests/outputs/cdksdf2smiles_009.diff tests/outputs/cdksdf2smiles_010.diff tests/outputs/cml-to-smi_001.diff tests/outputs/cml-to-smi_002.diff tests/outputs/cml-to-smi_003.diff tests/outputs/cml-to-smi_004.diff tests/outputs/cml-to-smi_005.diff tests/outputs/cml-to-smi_006.diff tests/outputs/cml-to-smi_007.diff tests/outputs/cml-to-smi_008.diff tests/outputs/cml-to-smi_009.diff tests/outputs/sdf-to-smi_001.diff tests/outputs/sdf-to-smi_002.diff tests/outputs/sdf-to-smi_003.diff tests/outputs/sdf-to-smi_004.diff tests/outputs/sdf-to-smi_005.diff tests/outputs/sdf-to-smi_006.diff tests/outputs/sdf-to-smi_007.diff tests/outputs/sdf-to-smi_008.diff tests/outputs/sdf-to-smi_009.diff tests/outputs/sdf-to-smi_010.diff tests/outputs/sdf-to-smi_011.diff tests/outputs/sdf-to-smi_012.diff tests/outputs/sdf-to-smi_013.diff tests/outputs/sdf-to-smi_014.diff tests/outputs/sdf-to-smi_015.diff tests/outputs/smi_canonicalise_001.diff tests/outputs/smi_canonicalise_002.diff tests/outputs/smi_canonicalise_003.diff tests/outputs/smi_canonicalise_004.diff tests/outputs/smi_canonicalise_005.diff tests/outputs/smi_canonicalise_006.diff tests/outputs/smi_canonicalise_007.diff tests/outputs/smi_canonicalise_008.diff tests/outputs/smi_canonicalise_009.diff tests/outputs/smi_canonicalise_010.diff tests/outputs/smi_canonicalise_011.diff tests/outputs/smi_canonicalise_012.diff tests/outputs/smi_canonicalise_013.diff tests/outputs/smi_canonicalise_014.diff tests/outputs/smi_canonicalise_015.diff tests/outputs/smi_canonicalise_016.diff tests/outputs/smi_canonicalise_017.diff tests/outputs/smi_canonicalise_018.diff tests/outputs/smi_canonicalise_019.diff tests/outputs/smi_canonicalise_020.diff tests/outputs/smi_canonicalise_021.diff tests/outputs/smi_canonicalise_022.diff tests/outputs/smi_canonicalise_023.diff tests/outputs/smi_canonicalise_024.diff tests/outputs/smi_canonicalise_025.diff tests/outputs/smi_canonicalise_026.diff tests/outputs/smi_canonicalise_027.diff tests/outputs/smi_canonicalise_028.diff tests/outputs/smi_canonicalise_029.diff tests/outputs/smi_isomorphism_001.diff tests/outputs/smi_isomorphism_002.diff tests/outputs/smi_isomorphism_003.diff tests/outputs/smi_isomorphism_004.diff tests/outputs/smi_isomorphism_005.diff tests/outputs/smi_isomorphism_006.diff tests/outputs/smi_isomorphism_007.diff tests/outputs/smi_isomorphism_008.diff tests/outputs/smi_isomorphism_009.diff tests/outputs/smi_isomorphism_010.diff tests/outputs/smi_isomorphism_011.diff tests/outputs/smi_isomorphism_012.diff tests/outputs/smi_isomorphism_013.diff tests/outputs/smi_isomorphism_014.diff tests/outputs/smi_isomorphism_015.diff tests/outputs/smi_isomorphism_016.diff tests/outputs/smi_isomorphism_017.diff tests/outputs/smi_isomorphism_018.diff tests/outputs/smi_isomorphism_019.diff tests/outputs/smi_isomorphism_020.diff tests/outputs/smi_isomorphism_021.diff tests/outputs/smi_isomorphism_022.diff tests/outputs/smi_isomorphism_023.diff tests/outputs/smi_isomorphism_024.diff tests/outputs/smi_isomorphism_025.diff tests/outputs/smi_isomorphism_026.diff tests/outputs/smi_isomorphism_027.diff tests/outputs/smi_isomorphism_028.diff tests/outputs/smi_isomorphism_029.diff tests/outputs/smi_isomorphism_030.diff tests/outputs/smi_isomorphism_031.diff tests/outputs/smi_isomorphism_032.diff tests/outputs/smi_isomorphism_033.diff tests/outputs/smi_isomorphism_034.diff tests/outputs/smi_parse_001.diff tests/outputs/smi_parse_002.diff tests/outputs/smi_parse_003.diff +rm -f tests/outputs/junit/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinatesTest.log tests/outputs/junit/net/crystallography/vector/space/ChangeOfBasisTest.log +rm -f externals/*/Build externals/*/MYMETA.* externals/[A-Z]*/Makefile externals/*/pm_to_blib +rm -rf externals/*/_build rm -f externals/Graph-Nauty-*/Nauty.bs +rm -f externals/Graph-Nauty-*/Nauty.c +rm -f externals/Graph-Nauty-*/Nauty.o rm -f version.h rm -f src/lib/perl5/COD/ToolsVersion.pm scripts/cod-tools-version -rm -f tests/outputs/junit/net/crystallography/vector/space/ChangeOfBasisTest.log tests/outputs/junit/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinatesTest.log -rm -f externals/Graph-Nauty-*/Nauty.c rm -f scripts/.cod-tools-version.d -rm -f externals/*/Build externals/*/MYMETA.* externals/[A-Z]*/Makefile externals/*/pm_to_blib rm -f src/Version.java -rm -f externals/Graph-Nauty-*/Nauty.o rm -f classes/Version.class -rm -rf externals/*/_build -rm -f classes/net/crystallography/vector/space/ChangeOfBasis.class classes/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinates.class classes/CDKCif2SdfHelp.class classes/CDKCif2SmilesHelp.class classes/CDKCif2XyzHelp.class classes/CDKDepictHelp.class classes/CDKRechargeHelp.class classes/CDKSdf2SmilesHelp.class classes/EPSOutputOption.class classes/OutputOption.class classes/PDFOutputOption.class classes/SVGOutputOption.class classes/Version.class classes/VersionOption.class classes/cdkcif2sdf.class classes/cdkcif2smiles.class classes/cdkcif2xyz.class classes/cdkdepict.class classes/cdkrecharge.class classes/cdksdf2smiles.class +rm -f classes/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinates.class classes/net/crystallography/vector/space/ChangeOfBasis.class classes/CDKCif2SdfHelp.class classes/CDKCif2SmilesHelp.class classes/CDKCif2XyzHelp.class classes/CDKDepictHelp.class classes/CDKRechargeHelp.class classes/CDKSdf2SmilesHelp.class classes/EPSOutputOption.class classes/OutputOption.class classes/PDFOutputOption.class classes/SVGOutputOption.class classes/Version.class classes/VersionOption.class classes/cdkcif2sdf.class classes/cdkcif2smiles.class classes/cdkcif2xyz.class classes/cdkdepict.class classes/cdkrecharge.class classes/cdksdf2smiles.class rm -f jars/smiles-scripts-0.2.0.jar jars/smiles-scripts.jar -rm -f tests/junit/classes/net/crystallography/vector/space/ChangeOfBasisTest.class tests/junit/classes/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinatesTest.class +rm -f tests/junit/classes/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinatesTest.class tests/junit/classes/net/crystallography/vector/space/ChangeOfBasisTest.class rm -f .depend rm -rf tests/junit/classes/* classes/* tests/outputs/junit/* rm -rf externals/*/blib @@ -2221,7 +2257,7 @@ mkdir jars grep '^ ' MANIFEST.txt | sed 's/[\r ]//g' | xargs -i ln -s {} jars dh_auto_build -- MODULE_BUILD_PARSE_YAPP= CHEMISTRY_OPENSMILES= - make -j42 "INSTALL=install --strip-program=true" MODULE_BUILD_PARSE_YAPP= CHEMISTRY_OPENSMILES= + make -j20 "INSTALL=install --strip-program=true" MODULE_BUILD_PARSE_YAPP= CHEMISTRY_OPENSMILES= make[2]: Entering directory '/build/reproducible-path/smiles-scripts-0.2.0+dfsg1' find: 'externals': No such file or directory find: 'externals': No such file or directory @@ -2263,26 +2299,26 @@ find: 'externals': No such file or directory find: 'externals': No such file or directory find: 'externals': No such file or directory -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/net/crystallography/vector/space/ChangeOfBasis.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/Version.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/OutputOption.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/EPSOutputOption.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/PDFOutputOption.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/SVGOutputOption.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/VersionOption.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinates.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKCif2SdfHelp.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKCif2SmilesHelp.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKCif2XyzHelp.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKDepictHelp.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKRechargeHelp.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKSdf2SmilesHelp.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdkcif2smiles.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdkrecharge.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdkdepict.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdksdf2smiles.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdkcif2sdf.java -javac -cp classes:jars/cdk-ctab.jar:jars/cdk-sdg.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio.jar:jars/cdk-standard.jar:jars/cdk-silent.jar:jars/cdk-io.jar:jars/freehep-graphicsbase.jar:jars/cdk-ioformats.jar:jars/cdk-interfaces.jar:jars/cdk-data.jar:jars/guava.jar:jars/freehep-graphics2d.jar:jars/freehep-graphicsio-ps.jar:jars/freehep-graphicsio-pdf.jar:jars/cdk-renderbasic.jar:jars/cdk-render.jar:jars/cdk-isomorphism.jar:jars/cdk-smiles.jar:jars/cdk-core.jar:jars/soptions.jar:jars/log4j-1.2.jar:jars/cdk-structgen.jar:jars/cdk-depict.jar:jars/beam-core.jar:jars/cdk-renderawt.jar:jars/vecmath.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdkcif2xyz.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/net/crystallography/vector/space/ChangeOfBasis.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/Version.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/OutputOption.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/VersionOption.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/EPSOutputOption.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/PDFOutputOption.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/SVGOutputOption.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinates.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKCif2SdfHelp.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKCif2SmilesHelp.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKCif2XyzHelp.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKDepictHelp.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKRechargeHelp.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/CDKSdf2SmilesHelp.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdkcif2smiles.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdkcif2xyz.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdkcif2sdf.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdkdepict.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdkrecharge.java +javac -cp classes:jars/cdk-standard.jar:jars/cdk-isomorphism.jar:jars/cdk-io.jar:jars/cdk-sdg.jar:jars/cdk-data.jar:jars/cdk-renderbasic.jar:jars/cdk-depict.jar:jars/cdk-ctab.jar:jars/vecmath.jar:jars/freehep-graphicsbase.jar:jars/freehep-graphicsio-pdf.jar:jars/freehep-graphics2d.jar:jars/cdk-core.jar:jars/log4j-1.2.jar:jars/cdk-ioformats.jar:jars/cdk-renderawt.jar:jars/cdk-interfaces.jar:jars/cdk-silent.jar:jars/beam-core.jar:jars/soptions.jar:jars/cdk-render.jar:jars/freehep-graphicsio.jar:jars/cdk-smiles.jar:jars/guava.jar:jars/cdk-structgen.jar:jars/freehep-graphicsio-svg.jar:jars/freehep-graphicsio-ps.jar:jars/smiles-scripts-0.2.0.jar -d classes src/cdksdf2smiles.java jar cfm jars/smiles-scripts-0.2.0.jar MANIFEST.txt -C classes . ln -sf smiles-scripts-0.2.0.jar jars/smiles-scripts.jar make[2]: Leaving directory '/build/reproducible-path/smiles-scripts-0.2.0+dfsg1' @@ -2312,7 +2348,7 @@ rm tests/cases/cml-to-smi_005.* rm tests/cases/sdf-to-smi_002.* dh_auto_test -- MODULE_BUILD_PARSE_YAPP= CHEMISTRY_OPENSMILES= - make -j42 test MODULE_BUILD_PARSE_YAPP= CHEMISTRY_OPENSMILES= + make -j20 test MODULE_BUILD_PARSE_YAPP= CHEMISTRY_OPENSMILES= make[2]: Entering directory '/build/reproducible-path/smiles-scripts-0.2.0+dfsg1' find: 'externals': No such file or directory find: 'externals': No such file or directory @@ -2332,106 +2368,106 @@ find: 'externals': No such file or directory find: 'externals': No such file or directory find: 'externals': No such file or directory -tests/cases/cdkcif2smiles_001.opt: tests/cases/cdkcif2xyz_001.opt: tests/cases/cdkdepict-cgi_002.sh: tests/cases/cdkdepict_002.inp: tests/cases/cdkdepict_003.opt: tests/cases/cdkdepict_021.opt: tests/cases/cdkrecharge_001.opt: tests/cases/cdkrecharge_002.sh: tests/cases/cdkrecharge_003.opt: tests/cases/cdkrecharge_004.opt: tests/cases/cdkrecharge_005.opt: tests/cases/cdkrecharge_006.inp: tests/cases/cdkrecharge_007.opt: tests/cases/cdkrecharge_008.inp: tests/cases/cdkrecharge_009.opt: tests/cases/cdkrecharge_010.opt: tests/cases/cdkrecharge_011.opt: tests/cases/cdkrecharge_012.inp: tests/cases/cdkrecharge_013.inp: tests/cases/cdkrecharge_014.inp: tests/cases/cdkrecharge_016.sh: tests/cases/cdkrecharge_017.sh: tests/cases/cdkrecharge_018.inp: tests/cases/cdkrecharge_019.inp: tests/cases/cdkrecharge_020.inp: tests/cases/cdksdf2smiles_001.opt: tests/cases/cdksdf2smiles_002.inp: tests/cases/cdksdf2smiles_003.inp: tests/cases/cdksdf2smiles_004.inp: tests/cases/cdksdf2smiles_006.inp: tests/cases/cdksdf2smiles_008.inp: tests/cases/cml-to-smi_001.inp: tests/cases/cml-to-smi_002.inp: tests/cases/cml-to-smi_003.inp: tests/cases/cml-to-smi_004.inp: tests/cases/cml-to-smi_006.inp: OK -tests/cases/cml-to-smi_007.inp: tests/cases/cml-to-smi_008.inp: OK -tests/cases/cml-to-smi_009.inp: tests/cases/sdf-to-smi_001.inp: tests/cases/sdf-to-smi_003.inp: OK +tests/cases/cdkcif2smiles_001.opt: tests/cases/cdkcif2xyz_001.opt: tests/cases/cdkdepict-cgi_002.sh: tests/cases/cdkdepict_002.inp: tests/cases/cdkdepict_003.opt: tests/cases/cdkdepict_021.opt: tests/cases/cdkrecharge_001.opt: tests/cases/cdkrecharge_002.sh: OK +tests/cases/cdkrecharge_003.opt: tests/cases/cdkrecharge_004.opt: tests/cases/cdkrecharge_005.opt: tests/cases/cdkrecharge_006.inp: tests/cases/cdkrecharge_007.opt: tests/cases/cdkrecharge_008.inp: tests/cases/cdkrecharge_009.opt: tests/cases/cdkrecharge_010.opt: tests/cases/cdkrecharge_011.opt: tests/cases/cdkrecharge_012.inp: OK +OK +tests/cases/cdkrecharge_013.inp: tests/cases/cdkrecharge_014.inp: tests/cases/cdkrecharge_016.sh: tests/cases/cdkrecharge_017.sh: tests/cases/cdkrecharge_018.inp: OK +tests/cases/cdkrecharge_019.inp: OK +tests/cases/cdkrecharge_020.inp: OK +tests/cases/cdksdf2smiles_001.opt: OK +tests/cases/cdksdf2smiles_002.inp: OK +OK +OK +tests/cases/cdksdf2smiles_003.inp: OK +tests/cases/cdksdf2smiles_004.inp: OK +OK +tests/cases/cdksdf2smiles_006.inp: tests/cases/cdksdf2smiles_008.inp: OK +tests/cases/cml-to-smi_001.inp: tests/cases/cml-to-smi_002.inp: tests/cases/cml-to-smi_003.inp: OK +OK +tests/cases/cml-to-smi_004.inp: tests/cases/cml-to-smi_006.inp: OK +tests/cases/cml-to-smi_007.inp: OK +tests/cases/cml-to-smi_008.inp: OK +tests/cases/cml-to-smi_009.inp: OK +OK +tests/cases/sdf-to-smi_001.inp: OK +OK +tests/cases/sdf-to-smi_003.inp: OK +tests/cases/sdf-to-smi_004.inp: tests/cases/sdf-to-smi_005.inp: OK +tests/cases/sdf-to-smi_006.inp: OK +tests/cases/sdf-to-smi_007.inp: tests/cases/sdf-to-smi_008.inp: OK OK -tests/cases/sdf-to-smi_004.inp: tests/cases/sdf-to-smi_005.inp: tests/cases/sdf-to-smi_006.inp: tests/cases/sdf-to-smi_007.inp: tests/cases/sdf-to-smi_008.inp: OK tests/cases/sdf-to-smi_009.inp: OK tests/cases/sdf-to-smi_010.inp: OK +OK tests/cases/sdf-to-smi_011.inp: OK tests/cases/sdf-to-smi_012.inp: OK -tests/cases/sdf-to-smi_013.inp: OK -tests/cases/sdf-to-smi_014.inp: OK OK +tests/cases/sdf-to-smi_013.inp: OK +tests/cases/sdf-to-smi_014.inp: tests/cases/sdf-to-smi_015.inp: OK +tests/cases/smi_canonicalise_001.inp: OK +tests/cases/smi_canonicalise_002.inp: OK OK -tests/cases/sdf-to-smi_015.inp: tests/cases/smi_canonicalise_001.inp: tests/cases/smi_canonicalise_002.inp: OK tests/cases/smi_canonicalise_003.inp: OK OK tests/cases/smi_canonicalise_004.inp: OK -tests/cases/smi_canonicalise_005.inp: tests/cases/smi_canonicalise_006.inp: OK -tests/cases/smi_canonicalise_007.inp: OK -tests/cases/smi_canonicalise_008.inp: OK -tests/cases/smi_canonicalise_009.inp: OK -tests/cases/smi_canonicalise_010.inp: OK -tests/cases/smi_canonicalise_011.inp: OK -tests/cases/smi_canonicalise_012.inp: OK +tests/cases/smi_canonicalise_005.inp: tests/cases/smi_canonicalise_006.inp: tests/cases/smi_canonicalise_007.inp: OK OK -tests/cases/smi_canonicalise_013.inp: OK OK -tests/cases/smi_canonicalise_014.inp: tests/cases/smi_canonicalise_015.inp: OK OK -tests/cases/smi_canonicalise_016.inp: OK -tests/cases/smi_canonicalise_017.inp: tests/cases/smi_canonicalise_018.inp: OK +tests/cases/smi_canonicalise_008.inp: OK +tests/cases/smi_canonicalise_009.inp: OK +tests/cases/smi_canonicalise_010.inp: OK +tests/cases/smi_canonicalise_011.inp: tests/cases/smi_canonicalise_012.inp: tests/cases/smi_canonicalise_013.inp: OK OK -tests/cases/smi_canonicalise_019.inp: tests/cases/smi_canonicalise_020.inp: tests/cases/smi_canonicalise_021.inp: OK +tests/cases/smi_canonicalise_014.inp: OK +tests/cases/smi_canonicalise_015.inp: OK +tests/cases/smi_canonicalise_016.inp: tests/cases/smi_canonicalise_017.inp: tests/cases/smi_canonicalise_018.inp: tests/cases/smi_canonicalise_019.inp: OK +tests/cases/smi_canonicalise_020.inp: tests/cases/smi_canonicalise_021.inp: OK tests/cases/smi_canonicalise_022.inp: OK OK -tests/cases/smi_canonicalise_023.inp: tests/cases/smi_canonicalise_024.inp: OK -OK -OK -tests/cases/smi_canonicalise_025.inp: tests/cases/smi_canonicalise_026.inp: OK -tests/cases/smi_canonicalise_027.inp: OK -OK -tests/cases/smi_canonicalise_028.inp: OK -OK -OK -tests/cases/smi_canonicalise_029.inp: tests/cases/smi_isomorphism_001.sh: tests/cases/smi_isomorphism_002.sh: tests/cases/smi_isomorphism_003.sh: tests/cases/smi_isomorphism_004.sh: OK +tests/cases/smi_canonicalise_023.inp: OK +tests/cases/smi_canonicalise_024.inp: OK +tests/cases/smi_canonicalise_025.inp: OK +OK +tests/cases/smi_canonicalise_026.inp: OK +OK +tests/cases/smi_canonicalise_027.inp: tests/cases/smi_canonicalise_028.inp: tests/cases/smi_canonicalise_029.inp: tests/cases/smi_isomorphism_001.sh: OK +tests/cases/smi_isomorphism_002.sh: OK +tests/cases/smi_isomorphism_003.sh: OK +tests/cases/smi_isomorphism_004.sh: OK +tests/cases/smi_isomorphism_005.sh: OK +tests/cases/smi_isomorphism_006.sh: OK OK -tests/cases/smi_isomorphism_005.sh: tests/cases/smi_isomorphism_006.sh: OK OK -tests/cases/smi_isomorphism_007.sh: tests/cases/smi_isomorphism_008.sh: OK -OK -tests/cases/smi_isomorphism_009.sh: tests/cases/smi_isomorphism_010.sh: OK +tests/cases/smi_isomorphism_007.sh: tests/cases/smi_isomorphism_008.sh: tests/cases/smi_isomorphism_009.sh: OK +tests/cases/smi_isomorphism_010.sh: OK tests/cases/smi_isomorphism_011.sh: OK tests/cases/smi_isomorphism_012.sh: OK +tests/cases/smi_isomorphism_013.sh: OK +tests/cases/smi_isomorphism_014.sh: OK OK -tests/cases/smi_isomorphism_013.sh: tests/cases/smi_isomorphism_014.sh: OK -tests/cases/smi_isomorphism_015.sh: OK -tests/cases/smi_isomorphism_016.sh: OK +tests/cases/smi_isomorphism_015.sh: tests/cases/smi_isomorphism_016.sh: OK tests/cases/smi_isomorphism_017.sh: OK tests/cases/smi_isomorphism_018.sh: OK OK -tests/cases/smi_isomorphism_019.sh: tests/cases/smi_isomorphism_020.sh: OK -tests/cases/smi_isomorphism_021.sh: OK -tests/cases/smi_isomorphism_022.sh: OK OK +tests/cases/smi_isomorphism_019.sh: tests/cases/smi_isomorphism_020.sh: tests/cases/smi_isomorphism_021.sh: OK OK -tests/cases/smi_isomorphism_023.sh: tests/cases/smi_isomorphism_024.sh: tests/cases/smi_isomorphism_025.sh: OK +tests/cases/smi_isomorphism_022.sh: OK +tests/cases/smi_isomorphism_023.sh: tests/cases/smi_isomorphism_024.sh: OK +tests/cases/smi_isomorphism_025.sh: OK tests/cases/smi_isomorphism_026.sh: OK tests/cases/smi_isomorphism_027.sh: OK tests/cases/smi_isomorphism_028.sh: OK -tests/cases/smi_isomorphism_029.sh: OK OK -tests/cases/smi_isomorphism_030.sh: tests/cases/smi_isomorphism_031.sh: OK -tests/cases/smi_isomorphism_032.sh: OK +tests/cases/smi_isomorphism_029.sh: tests/cases/smi_isomorphism_030.sh: OK +OK +tests/cases/smi_isomorphism_031.sh: tests/cases/smi_isomorphism_032.sh: OK tests/cases/smi_isomorphism_033.sh: OK tests/cases/smi_isomorphism_034.sh: OK -OK tests/cases/smi_parse_001.inp: OK -tests/cases/smi_parse_002.inp: tests/cases/smi_parse_003.sh: OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK -OK +tests/cases/smi_parse_002.inp: OK +tests/cases/smi_parse_003.sh: OK OK OK OK @@ -2490,8 +2526,8 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'libsmiles-scripts-java' in '../libsmiles-scripts-java_0.2.0+dfsg1-6_all.deb'. -dpkg-deb: building package 'libsmiles-scripts-perl' in '../libsmiles-scripts-perl_0.2.0+dfsg1-6_all.deb'. dpkg-deb: building package 'smiles-scripts' in '../smiles-scripts_0.2.0+dfsg1-6_all.deb'. +dpkg-deb: building package 'libsmiles-scripts-perl' in '../libsmiles-scripts-perl_0.2.0+dfsg1-6_all.deb'. dpkg-genbuildinfo --build=binary -O../smiles-scripts_0.2.0+dfsg1-6_amd64.buildinfo dpkg-genchanges --build=binary -O../smiles-scripts_0.2.0+dfsg1-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2499,12 +2535,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1400165/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1400165/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3733614 and its subdirectories -I: Current time: Mon Dec 1 23:47:30 -12 2025 -I: pbuilder-time-stamp: 1764676050 +I: removing directory /srv/workspace/pbuilder/1400165 and its subdirectories +I: Current time: Wed Oct 30 19:30:02 +14 2024 +I: pbuilder-time-stamp: 1730266202