Diff of the two buildlogs: -- --- b1/build.log 2025-09-27 09:31:23.470475251 +0000 +++ b2/build.log 2025-09-27 09:37:45.558951107 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Sep 26 21:19:17 -12 2025 -I: pbuilder-time-stamp: 1758964757 +I: Current time: Sat Oct 31 05:54:27 +14 2026 +I: pbuilder-time-stamp: 1793375667 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying update-minimum-cmake-version.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1897484/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2869906/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 30 15:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2869906/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2869906/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='10e773f4ec8e4e36b99af4b94a9cf76c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1897484' - PS1='# ' - PS2='> ' + INVOCATION_ID=e4e31d7ff2f04b80b534b62f9a1d034b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2869906 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fGe0pKM6/pbuilderrc_6lGB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fGe0pKM6/b1 --logfile b1/build.log scrappie_1.4.2-9.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fGe0pKM6/pbuilderrc_caXX --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fGe0pKM6/b2 --logfile b2/build.log scrappie_1.4.2-9.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1897484/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2869906/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -230,7 +262,7 @@ Get: 111 http://deb.debian.org/debian unstable/main amd64 libopenblas-pthread-dev amd64 0.3.30+ds-3 [5500 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libopenblas-dev amd64 0.3.30+ds-3 [59.2 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] -Fetched 64.6 MB in 12s (5395 kB/s) +Fetched 64.6 MB in 10s (6334 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) @@ -704,7 +736,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../scrappie_1.4.2-9_source.changes +I: user script /srv/workspace/pbuilder/2869906/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2869906/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../scrappie_1.4.2-9_source.changes dpkg-buildpackage: info: source package scrappie dpkg-buildpackage: info: source version 1.4.2-9 dpkg-buildpackage: info: source distribution unstable @@ -764,7 +800,7 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (3.3s) +-- Configuring done (1.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -803,7 +839,7 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (0.7s) +-- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -842,8 +878,8 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (2.8s) --- Generating done (0.2s) +-- Configuring done (0.7s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -881,8 +917,8 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (4.1s) --- Generating done (0.1s) +-- Configuring done (0.6s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -920,8 +956,8 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (2.8s) --- Generating done (0.1s) +-- Configuring done (0.7s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -959,8 +995,8 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (2.6s) --- Generating done (0.1s) +-- Configuring done (0.8s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -1000,8 +1036,8 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (3.6s) --- Generating done (0.1s) +-- Configuring done (0.6s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -1026,7 +1062,7 @@ dh_auto_build --builddirectory build_${SIMD} && \ cp build_${SIMD}/scrappie build_${SIMD}/scrappie-${SIMD} ; \ done - cd build_avx2 && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_avx2 && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_avx2' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_avx2/CMakeFiles /build/reproducible-path/scrappie-1.4.2/build_avx2//CMakeFiles/progress.marks @@ -1040,32 +1076,32 @@ cd /build/reproducible-path/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/build_avx2 /build/reproducible-path/scrappie-1.4.2/build_avx2 /build/reproducible-path/scrappie-1.4.2/build_avx2/CMakeFiles/test_interface.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_avx2' make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_avx2' -make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build +make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_avx2' make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_avx2' +[ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o [ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o +[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/test_interface.dir/src/test_interface.c.o -MF CMakeFiles/test_interface.dir/src/test_interface.c.o.d -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test_interface.c /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -MF CMakeFiles/scrappie_objects.dir/src/event_detection.c.o.d -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/reproducible-path/scrappie-1.4.2/src/event_detection.c -[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o -[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/layers.c.o -MF CMakeFiles/scrappie_objects.dir/src/layers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/reproducible-path/scrappie-1.4.2/src/layers.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/networks.c.o -MF CMakeFiles/scrappie_objects.dir/src/networks.c.o.d -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/reproducible-path/scrappie-1.4.2/src/networks.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_matrix.c -[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o -[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -MF CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o.d -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/reproducible-path/scrappie-1.4.2/src/homopolymer.c -[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o -[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/decode.c.o -MF CMakeFiles/scrappie_objects.dir/src/decode.c.o.d -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/reproducible-path/scrappie-1.4.2/src/decode.c +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_common.c +[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_matrix.c +[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT 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CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_matrix.c +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_util.c +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_signal.c +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c:4: +/usr/include/features.h:199:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + 199 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + | ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/15/include/stdint.h:11, @@ -1453,30 +1499,20 @@ /usr/include/features.h:199:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 199 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/math.h:27, - from /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c:4: -/usr/include/features.h:199:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - 199 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - | ^~~~~~~ -[ 94%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -[ 92%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_elu.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_util.c [ 97%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 -[100%] Linking C executable scrappie_unittest -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/scrappie.dir/link.d CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse4.1' +[100%] Linking C executable scrappie_unittest [100%] Built target scrappie +/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/scrappie_unittest.dir/link.d CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse4.1' [100%] Built target scrappie_unittest make[3]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse4.1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse4.1' - cd build_ssse3 && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_ssse3 && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_ssse3/CMakeFiles /build/reproducible-path/scrappie-1.4.2/build_ssse3//CMakeFiles/progress.marks @@ -1490,32 +1526,32 @@ cd /build/reproducible-path/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/build_ssse3 /build/reproducible-path/scrappie-1.4.2/build_ssse3 /build/reproducible-path/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build -make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' -[ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o -[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 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'/build/reproducible-path/scrappie-1.4.2/build_ssse3' +[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o +[ 5%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/test_interface.dir/src/test_interface.c.o -MF CMakeFiles/test_interface.dir/src/test_interface.c.o.d -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test_interface.c -[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include 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/build/reproducible-path/scrappie-1.4.2/src/scrappie_common.c +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o +[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c +[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include 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/build/reproducible-path/scrappie-1.4.2/src/util.c -[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -MF CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o.d -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/reproducible-path/scrappie-1.4.2/src/homopolymer.c +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_interface.dir/link.d 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/build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/build_ssse3 /build/reproducible-path/scrappie-1.4.2/build_ssse3 /build/reproducible-path/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/build_ssse3 /build/reproducible-path/scrappie-1.4.2/build_ssse3 /build/reproducible-path/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' -make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build +make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' +make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' -[ 39%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o -[ 42%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -[ 36%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o +[ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o +[ 52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o +[ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o +[ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o +[ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o +[ 63%] Building C object 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-MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_elu.c -[ 92%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -[ 94%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o.d 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-I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_signal.c +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c:4: +/usr/include/features.h:199:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + 199 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + | ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/15/include/stdint.h:11, @@ -1607,61 +1649,55 @@ /usr/include/features.h:199:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 199 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/math.h:27, - from /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c:4: -/usr/include/features.h:199:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - 199 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - | ^~~~~~~ [ 97%] Linking C executable scrappie /usr/bin/cmake -E 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-I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_squiggle.c -[ 94%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong 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included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c:4: +/usr/include/features.h:199:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + 199 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + | ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/15/include/stdint.h:11, @@ -2058,23 +2101,16 @@ /usr/include/features.h:199:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 199 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_elu.c -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/math.h:27, - from /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c:4: -/usr/include/features.h:199:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - 199 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - | ^~~~~~~ -[ 97%] Linking C executable scrappie_unittest -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 -[100%] Linking C executable scrappie +[ 97%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/scrappie_unittest.dir/link.d CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/scrappie_unittest.dir/link.d CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit +make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' +[100%] Built target scrappie_unittest make[3]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_plain/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' @@ -2085,10 +2121,10 @@ for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_test --builddirectory build_${SIMD} ; \ done - cd build_avx2 && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + cd build_avx2 && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_avx2' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_avx2/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_avx2/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_avx2 @@ -9753,155 +9789,6 @@ 8: 7500 38814 89.703949 0.230700 3 8: 7501 38817 88.716156 0.453932 3 8: 7502 38820 75.306870 2.193185 5 -19: scrappie 1.4.0- -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. -18: Usage: squiggle [OPTION...] fasta [fasta ...] -18: Scrappie squiggler -18: -18: --licence, --license Print licensing information -18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -18: -m, --model=name Squiggle model to use: "squiggle_r94", -18: "squiggle_r94_rna", "squiggle_r10" -18: -o, --output=filename Write to file rather than stdout -18: -p, --prefix=string Prefix to append to name of each read -18: --rescale, --no-rescale Rescale network output -18: -?, --help Give this help list -18: --usage Give a short usage message -18: -V, --version Print program version -18: -18: Mandatory or optional arguments to long options are also mandatory or optional -18: for any corresponding short options. -18: -18: Report bugs to . -14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies -14: Limited Research Algorithms group. -14: -14: Basic usage: -14: * scrappie events Base call from event based data. -14: * scrappie help Print general help or help about specific Scrappie command. -14: * scrappie licence Print licensing information. -14: * scrappie raw Base call directly from raw signal. -14: * scrappie version Print version information. -14: * scrappie squiggle Create approximate squiggle for sequence -14: * scrappie mappy Map signal to approximate squiggle -14: * scrappie seqmappy Map signal to sequence via basecall posteriors -14: * scrappie event_table Output table of events for read -14: -14: This project began life as a proof (bet) that a base caller could be written -14: in a low level language in under 8 hours. Some of the poor and just plain odd -14: design decisions, along with the lack of documentation, are a result of its -14: inception. In keeping with ONT's fish naming policy, the project was originally -14: called Crappie. -14: -14: Scrappie's purpose is to demonstrate the next generation of base calling and, as -14: such, may change drastically between releases and breaks backwards -14: compatibility. Newer versions may drop support of current features or change their -14: behaviour. -17: Usage: raw [OPTION...] fast5 [fast5 ...] -17: Scrappie basecaller -- basecall from raw signal -17: -17: -#, --threads=nparallel Number of reads to call in parallel -17: -f, --format=format Format to output reads (FASTA or SAM) -17: --hdf5-chunk=size Chunk size for HDF5 output -17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -17: 1: quickest, 9: best) -17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from -17: "nochange" or "mean" (default). Not implemented -17: for CRF. -17: --licence, --license Print licensing information -17: --local=penalty Penalty for local basecalling -17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", -17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" -17: -m, --min_prob=probability Minimum bound on probability of match -17: -o, --output=filename Write to file rather than stdout -17: -p, --prefix=string Prefix to append to name of each read -17: --segmentation=chunk:percentile -17: Chunk size and percentile for variance based -17: segmentation -17: --slip, --no-slip Use slipping -17: -s, --skip=penalty Penalty for skipping a base -17: --temperature1=factor Temperature for softmax weights -17: --temperature2=factor Temperature for softmax bias -17: -t, --trim=start:end Number of samples to trim, as start:end -17: --uuid, --no-uuid Output UUID -17: -y, --stay=penalty Penalty for staying -17: -?, --help Give this help list -17: --usage Give a short usage message -17: -V, --version Print program version -17: -17: Mandatory or optional arguments to long options are also mandatory or optional -17: for any corresponding short options. -17: -17: Report bugs to . -15: Usage: events [OPTION...] fast5 [fast5 ...] -15: Scrappie basecaller -- basecall via events -15: -15: -#, --threads=nparallel Number of reads to call in parallel -15: --dump=filename Dump annotated events to HDF5 file -15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths -15: -f, --format=format Format to output reads (FASTA or SAM) -15: --hdf5-chunk=size Chunk size for HDF5 output -15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -15: 1: quickest, 9: best) -15: --licence, --license Print licensing information -15: --local=penalty Penalty for local basecalling -15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -15: -m, --min_prob=probability Minimum bound on probability of match -15: -o, --output=filename Write to file rather than stdout -15: -p, --prefix=string Prefix to append to name of each read -15: --segmentation=chunk:percentile -15: Chunk size and percentile for variance based -15: segmentation -15: --slip, --no-slip Use slipping -15: -s, --skip=penalty Penalty for skipping a base -15: --temperature1=factor Temperature for softmax weights -15: --temperature2=factor Temperature for softmax bias -15: -t, --trim=start:end Number of events to trim, as start:end -15: --uuid, --no-uuid Output UUID -15: -y, --stay=penalty Penalty for staying -15: -?, --help Give this help list -15: --usage Give a short usage message -15: -V, --version Print program version -15: -15: Mandatory or optional arguments to long options are also mandatory or optional -15: for any corresponding short options. -15: -15: Report bugs to . -16: Usage: event_table [OPTION...] fast5 [fast5 ...] -16: Scrappie basecaller -- basecall via events -16: -16: --licence, --license Print licensing information -16: -o, --output=filename Write to file rather than stdout -16: --segmentation=chunk:percentile -16: Chunk size and percentile for variance based -16: segmentation -16: -t, --trim=start:end Number of events to trim, as start:end -16: -?, --help Give this help list -16: --usage Give a short usage message -16: -V, --version Print program version -16: -16: Mandatory or optional arguments to long options are also mandatory or optional -16: for any corresponding short options. -16: -16: Report bugs to . - 1/19 Test #13: test_licence ..................... Passed 0.44 sec - 2/19 Test #14: test_help ........................ Passed 0.43 sec - 3/19 Test #15: test_help_events ................. Passed 0.42 sec - 4/19 Test #16: test_help_event_table ............ Passed 0.39 sec - 5/19 Test #17: test_help_raw .................... Passed 0.38 sec - 6/19 Test #18: test_help_squiggle ............... Passed 0.38 sec - 7/19 Test #19: test_version ..................... Passed 0.36 sec 8: 7503 38825 63.564476 1.441401 5 8: 7504 38830 62.439320 1.420930 8 8: 7505 38838 43.586365 1.029295 3 @@ -11177,6 +11064,155 @@ 8: 8775 45500 72.602783 3.450119 6 8: 8776 45506 78.832611 1.668440 11 8: 8777 45517 81.616394 1.072790 3 +15: Usage: events [OPTION...] fast5 [fast5 ...] +15: Scrappie basecaller -- basecall via events +15: +15: -#, --threads=nparallel Number of reads to call in parallel +15: --dump=filename Dump annotated events to HDF5 file +15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths +15: -f, --format=format Format to output reads (FASTA or SAM) +15: --hdf5-chunk=size Chunk size for HDF5 output +15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +15: 1: quickest, 9: best) +15: --licence, --license Print licensing information +15: --local=penalty Penalty for local basecalling +15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +15: -m, --min_prob=probability Minimum bound on probability of match +15: -o, --output=filename Write to file rather than stdout +15: -p, --prefix=string Prefix to append to name of each read +15: --segmentation=chunk:percentile +15: Chunk size and percentile for variance based +15: segmentation +15: --slip, --no-slip Use slipping +15: -s, --skip=penalty Penalty for skipping a base +15: --temperature1=factor Temperature for softmax weights +15: --temperature2=factor Temperature for softmax bias +15: -t, --trim=start:end Number of events to trim, as start:end +15: --uuid, --no-uuid Output UUID +15: -y, --stay=penalty Penalty for staying +15: -?, --help Give this help list +15: --usage Give a short usage message +15: -V, --version Print program version +15: +15: Mandatory or optional arguments to long options are also mandatory or optional +15: for any corresponding short options. +15: +15: Report bugs to . +19: scrappie 1.4.0- +18: Usage: squiggle [OPTION...] fasta [fasta ...] +18: Scrappie squiggler +18: +18: --licence, --license Print licensing information +18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +18: -m, --model=name Squiggle model to use: "squiggle_r94", +18: "squiggle_r94_rna", "squiggle_r10" +18: -o, --output=filename Write to file rather than stdout +18: -p, --prefix=string Prefix to append to name of each read +18: --rescale, --no-rescale Rescale network output +18: -?, --help Give this help list +18: --usage Give a short usage message +18: -V, --version Print program version +18: +18: Mandatory or optional arguments to long options are also mandatory or optional +18: for any corresponding short options. +18: +18: Report bugs to . +17: Usage: raw [OPTION...] fast5 [fast5 ...] +17: Scrappie basecaller -- basecall from raw signal +17: +17: -#, --threads=nparallel Number of reads to call in parallel +17: -f, --format=format Format to output reads (FASTA or SAM) +17: --hdf5-chunk=size Chunk size for HDF5 output +17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +17: 1: quickest, 9: best) +17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from +17: "nochange" or "mean" (default). Not implemented +17: for CRF. +17: --licence, --license Print licensing information +17: --local=penalty Penalty for local basecalling +17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", +17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" +17: -m, --min_prob=probability Minimum bound on probability of match +17: -o, --output=filename Write to file rather than stdout +17: -p, --prefix=string Prefix to append to name of each read +17: --segmentation=chunk:percentile +17: Chunk size and percentile for variance based +17: segmentation +17: --slip, --no-slip Use slipping +17: -s, --skip=penalty Penalty for skipping a base +17: --temperature1=factor Temperature for softmax weights +17: --temperature2=factor Temperature for softmax bias +17: -t, --trim=start:end Number of samples to trim, as start:end +17: --uuid, --no-uuid Output UUID +17: -y, --stay=penalty Penalty for staying +17: -?, --help Give this help list +17: --usage Give a short usage message +17: -V, --version Print program version +17: +17: Mandatory or optional arguments to long options are also mandatory or optional +17: for any corresponding short options. +17: +17: Report bugs to . +16: Usage: event_table [OPTION...] fast5 [fast5 ...] +16: Scrappie basecaller -- basecall via events +16: +16: --licence, --license Print licensing information +16: -o, --output=filename Write to file rather than stdout +16: --segmentation=chunk:percentile +16: Chunk size and percentile for variance based +16: segmentation +16: -t, --trim=start:end Number of events to trim, as start:end +16: -?, --help Give this help list +16: --usage Give a short usage message +16: -V, --version Print program version +16: +16: Mandatory or optional arguments to long options are also mandatory or optional +16: for any corresponding short options. +16: +16: Report bugs to . +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. +14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies +14: Limited Research Algorithms group. +14: +14: Basic usage: +14: * scrappie events Base call from event based data. +14: * scrappie help Print general help or help about specific Scrappie command. +14: * scrappie licence Print licensing information. +14: * scrappie raw Base call directly from raw signal. +14: * scrappie version Print version information. +14: * scrappie squiggle Create approximate squiggle for sequence +14: * scrappie mappy Map signal to approximate squiggle +14: * scrappie seqmappy Map signal to sequence via basecall posteriors +14: * scrappie event_table Output table of events for read +14: +14: This project began life as a proof (bet) that a base caller could be written +14: in a low level language in under 8 hours. Some of the poor and just plain odd +14: design decisions, along with the lack of documentation, are a result of its +14: inception. In keeping with ONT's fish naming policy, the project was originally +14: called Crappie. +14: +14: Scrappie's purpose is to demonstrate the next generation of base calling and, as +14: such, may change drastically between releases and breaks backwards +14: compatibility. Newer versions may drop support of current features or change their +14: behaviour. + 1/19 Test #13: test_licence ..................... Passed 0.25 sec + 2/19 Test #14: test_help ........................ Passed 0.28 sec + 3/19 Test #15: test_help_events ................. Passed 0.26 sec + 4/19 Test #16: test_help_event_table ............ Passed 0.26 sec + 5/19 Test #17: test_help_raw .................... Passed 0.23 sec + 6/19 Test #18: test_help_squiggle ............... Passed 0.23 sec + 7/19 Test #19: test_version ..................... Passed 0.20 sec 8: 8778 45520 84.224785 1.654923 12 8: 8779 45532 82.789398 0.796722 4 8: 8780 45536 70.639542 1.052109 5 @@ -14796,2527 +14832,7 @@ 8: 12394 64075 54.637299 0.944376 3 8: 12395 64078 52.637016 1.520129 5 8: 12396 64083 61.066772 1.247263 7 - 8/19 Test #8: test_event_table ................. Passed 0.59 sec -11: #one -11: pos base current sd dwell -11: 0 T -0.010010 0.502173 1.176593 -11: 1 G -0.950617 0.348543 2.088944 -11: 2 T 0.736577 0.165384 4.633705 -11: 3 T 0.642673 0.129803 5.466540 -11: 4 G -0.697024 0.139663 7.290120 -11: 5 G -0.480742 0.109040 7.654729 -11: 6 C 0.391611 0.138395 6.948604 -11: 7 A -0.716510 0.123428 5.774498 -11: 8 G -0.374874 0.104234 5.913416 -11: 9 C 0.841809 0.140710 6.172668 -11: 10 A -0.358531 0.161921 6.871535 -11: 11 G -1.491872 0.116200 8.760594 -11: 12 A -1.225777 0.153093 6.404626 -11: 13 T 1.240667 0.217671 7.256704 -11: 14 G -0.191318 0.112068 6.538767 -11: 15 C -0.475078 0.106112 8.398643 -11: 16 T 0.309771 0.115460 7.341069 -11: 17 T 1.010499 0.123026 7.554199 -11: 18 C 0.556588 0.091802 7.529613 -11: 19 C 0.691395 0.090875 6.700677 -11: 20 C 0.348363 0.124614 7.505014 -11: 21 A -1.026199 0.166041 7.514484 -11: 22 T 0.342611 0.138214 8.876358 -11: 23 T 0.706096 0.089782 10.853828 -11: 24 T 0.819723 0.164765 8.472437 -11: 25 A -0.973079 0.138152 8.373974 -11: 26 T 0.352361 0.127671 7.860759 -11: 27 T 0.079815 0.088518 7.054143 -11: 28 T 0.236865 0.098577 8.664771 -11: 29 T 0.566542 0.142689 7.519637 -11: 30 G -0.264874 0.106015 7.371053 -11: 31 C 0.791846 0.109663 6.021642 -11: 32 C 0.549050 0.103019 6.142133 -11: 33 A -0.371786 0.158000 6.289701 -11: 34 G -1.404448 0.125610 7.082584 -11: 35 G -2.080340 0.187951 5.692743 -11: 36 T 0.005119 0.117134 7.578292 -11: 37 T -0.173151 0.084602 6.695480 -11: 38 T 0.156755 0.097785 6.817382 -11: 39 T 1.059732 0.141077 8.329947 -11: 40 C -0.541510 0.130655 6.575303 -11: 41 T 0.332809 0.122280 7.291696 -11: 42 T 1.082067 0.131796 7.141840 -11: 43 C 0.290172 0.105185 6.062037 -11: 44 C -0.073962 0.128965 7.155150 -11: 45 T 1.601286 0.228792 7.034566 -11: 46 C -0.115510 0.133252 8.450492 -11: 47 T 0.771245 0.116999 7.242767 -11: 48 T 0.579434 0.129769 8.826072 -11: 49 A -0.246293 0.104990 9.020959 -11: 50 T 1.063296 0.176394 9.056819 -11: 51 A -0.134681 0.090464 8.797022 -11: 52 C 0.045840 0.111981 8.255016 -11: 53 T 1.480872 0.175373 6.328882 -11: 54 C 0.262542 0.105991 8.830772 -11: 55 T 1.036465 0.149759 7.520970 -11: 56 A 0.335850 0.097007 6.485708 -11: 57 C 1.033337 0.132533 6.576474 -11: 58 A -0.023477 0.140189 6.534716 -11: 59 A -0.403958 0.084301 7.745971 -11: 60 G -1.041867 0.116899 6.537789 -11: 61 G -2.020832 0.133692 7.422082 -11: 62 A -1.479739 0.189822 7.333650 -11: 63 T 1.739981 0.246598 5.920569 -11: 64 C -0.365131 0.136795 6.649535 -11: 65 T 0.094386 0.114840 8.190216 -11: 66 T 0.182152 0.103313 6.036790 -11: 67 T 1.234470 0.115655 8.482240 -11: 68 C 0.401845 0.101548 8.495727 -11: 69 C 0.249187 0.092405 10.196221 -11: 70 T 0.941486 0.181003 9.915107 -11: 71 G -1.158329 0.159878 7.397637 -11: 72 A -1.462965 0.182900 9.285784 -11: 73 T 1.772415 0.216077 7.960547 -11: 74 C 0.371497 0.101499 11.488269 -11: 75 C -0.030643 0.142299 6.485806 -11: 76 T 1.675349 0.189174 9.204261 -11: 77 C 0.502611 0.116411 6.165473 -11: 78 T 1.122693 0.169761 8.898212 -11: 79 A -0.167244 0.143298 8.396337 -11: 80 G -1.128837 0.121890 8.533209 -11: 81 G -0.871306 0.119097 9.965734 -11: 82 C 0.033175 0.112943 6.462045 -11: 83 T 0.797424 0.180976 8.928587 -11: 84 G -0.504323 0.186701 6.361394 -11: 85 T 0.685663 0.227486 7.037620 -11: 86 A -0.706554 0.140738 6.726540 -11: 87 T 1.907671 0.185034 5.820261 -11: 88 C 0.808940 0.133685 5.374137 -11: 89 A -0.395138 0.155283 6.029943 -11: 90 G -1.571920 0.120197 7.756402 -11: 91 A -1.193893 0.148370 7.216361 -11: 92 T 1.160641 0.207332 8.183738 -11: 93 G -0.107997 0.118789 6.579356 -11: 94 C 0.595114 0.090726 7.503166 -11: 95 C 0.403194 0.081291 7.783167 -11: 96 C 0.539310 0.089904 6.762851 -11: 97 C 0.693974 0.090316 7.026294 -11: 98 C 0.754526 0.092285 6.201974 -11: 99 C 0.629361 0.089013 6.868381 -11: 100 C 0.338854 0.111799 8.229415 -11: 101 T 1.289501 0.251401 7.462874 -11: 102 G -1.145431 0.212425 6.443044 -11: 103 T 0.084039 0.124874 7.543467 -11: 104 T 0.004212 0.086160 6.749032 -11: 105 T 0.190635 0.100707 8.221657 -11: 106 T 0.528921 0.133780 9.993093 -11: 107 G -0.220093 0.111300 7.531039 -11: 108 C 0.944602 0.113662 6.974422 -11: 109 C 0.601967 0.117033 6.163235 -11: 110 A -0.617178 0.124319 6.257878 -11: 111 A -0.306512 0.103725 6.606534 -11: 112 C 0.784691 0.118363 9.119719 -11: 113 C -0.214595 0.140790 7.401841 -11: 114 T 1.049206 0.122571 9.435512 -11: 115 T 0.773834 0.134920 6.475677 -11: 116 A -0.384758 0.108630 7.902030 -11: 117 G -0.347505 0.105828 7.771430 -11: 118 C 0.291084 0.122589 6.892611 -11: 119 A -0.089011 0.104991 6.938235 -11: 120 C 0.811428 0.095151 8.667236 -11: 121 C 0.524076 0.089829 7.726244 -11: 122 C 0.264877 0.112331 7.119059 -11: 123 T 1.076214 0.227470 6.295970 -11: 124 G -0.689324 0.170158 8.711839 -11: 125 T 0.898852 0.192461 7.121983 -11: 126 G -0.370243 0.104369 8.615682 -11: 127 C -0.434160 0.113973 6.328002 -11: 128 T 0.762096 0.112126 7.456449 -11: 129 T 0.867069 0.140928 8.740055 -11: 130 A -0.448595 0.144167 6.329791 -11: 131 A -1.437285 0.159602 7.604872 -11: 132 T 0.720457 0.143018 9.080451 -11: 133 T 1.212475 0.154500 6.853188 -11: 134 C 0.102629 0.109620 9.241679 -11: 135 T 0.868093 0.213468 7.449694 -11: 136 G -0.809429 0.179892 7.800998 -11: 137 T 1.492153 0.188448 7.040135 -11: 138 C 0.189504 0.123660 7.641791 -11: 139 A -0.239694 0.111241 6.662440 -11: 140 T 1.032503 0.202127 6.866648 -11: 141 A -0.587940 0.117697 7.777905 -11: 142 A -0.557020 0.120158 7.643400 -11: 143 T 1.237921 0.323180 4.939051 -11: 144 A -0.835643 0.150865 6.502275 -11: 145 T 0.432441 0.138723 5.264152 -11: 146 T 0.649908 0.093182 6.801710 -11: 147 T 0.688118 0.133082 8.931256 -11: 148 A -0.469877 0.120374 7.574522 -11: 149 G -0.532246 0.117035 9.471703 -11: 150 C 0.618662 0.119849 7.857930 -11: 151 C -0.482324 0.111230 10.504077 -11: 152 T 0.625815 0.133692 8.081359 -11: 153 T 1.138815 0.143150 8.582520 -11: 154 C 0.075001 0.127083 7.623355 -11: 155 T 1.613816 0.151714 7.429978 -11: 156 C 0.529422 0.123453 7.674767 -11: 157 A -0.618425 0.113077 10.169827 -11: 158 G -0.653490 0.112714 8.254806 -11: 159 C 0.466752 0.106861 10.170794 -11: 160 T 0.897658 0.184083 7.025882 -11: 161 A -0.319519 0.113126 9.771779 -11: 162 T 1.208605 0.223265 7.323045 -11: 163 G -0.679153 0.187851 7.824593 -11: 164 G -1.934744 0.204825 7.802989 -11: 165 T 0.373174 0.119537 11.224396 -11: 166 T 0.500408 0.119147 6.920899 -11: 167 A -0.021215 0.084877 10.040686 -11: 168 C 0.279518 0.136563 6.821445 -11: 169 G -1.137453 0.161528 8.346110 -11: 170 T 1.132178 0.299583 6.144419 -11: 171 G -1.321131 0.192069 7.355206 -11: 172 T 0.105534 0.129006 6.334252 -11: 173 T 0.372542 0.085814 7.996547 -11: 174 T 0.507604 0.147822 5.985894 -11: 175 A -0.395396 0.117411 8.243734 -11: 176 T 1.311672 0.258602 7.098544 -11: 177 G -1.167615 0.185911 7.833342 -11: 178 T -0.072168 0.124134 7.443668 -11: 179 T 0.131212 0.094431 7.748695 -11: 180 T 0.964221 0.120251 8.619419 -11: 181 C 0.394855 0.085581 9.139339 -11: 182 C 0.404589 0.090203 8.176325 -11: 183 C 0.408476 0.104981 9.286902 -11: 184 T 0.913319 0.184944 9.026564 -11: 185 G -1.036021 0.152003 7.706956 -11: 186 A -0.736981 0.110249 10.229517 -11: 187 C -0.324821 0.122916 6.917765 -11: 188 T 0.091993 0.099238 11.205468 -11: 189 T 0.477062 0.089248 9.466480 -11: 190 T 0.895845 0.122006 7.917982 -11: 191 A -0.269520 0.131538 7.546732 -11: 192 G -1.587539 0.122984 7.637352 -11: 193 A -1.699096 0.173881 8.890913 -11: 194 T 0.756964 0.145360 8.548681 -11: 195 T 0.686159 0.158941 6.903464 -11: 196 G -0.696298 0.139380 10.271826 -11: 197 T 0.768339 0.169498 8.867887 -11: 198 G -0.655216 0.159245 9.232305 -11: 199 A -1.331315 0.117833 9.601289 -11: 200 G -2.171115 0.170749 7.580558 -11: 201 T 0.423240 0.130662 7.269081 -11: 202 T 1.113614 0.133694 8.173464 -11: 203 C -0.418292 0.137763 4.893952 -11: 204 T 0.649558 0.107211 6.680825 -11: 205 T 0.661936 0.122945 6.556487 -11: 206 G -0.348749 0.134756 6.292922 -11: 207 A -0.864659 0.113605 7.781948 -11: 208 A -1.077374 0.110413 7.952811 -11: 209 A -1.301381 0.147561 7.753476 -11: 210 T 1.036566 0.145247 6.837223 -11: 211 T 0.699662 0.154459 6.596766 -11: 212 A -0.544419 0.142603 6.686372 -11: 213 T 1.807538 0.179895 7.456210 -11: 214 C 0.560316 0.101739 9.192197 -11: 215 C 0.554555 0.078071 7.636508 -11: 216 C 0.905174 0.084251 7.406614 -11: 217 C 0.723301 0.105557 7.207385 -11: 218 A -0.448092 0.108312 10.383602 -11: 219 G -0.364070 0.104204 8.677763 -11: 220 C 0.347530 0.119462 7.292720 -11: 221 A 0.044570 0.099405 8.369788 -11: 222 C 1.175635 0.108923 7.362573 -11: 223 C 0.867724 0.100999 8.701097 -11: 224 A -0.127487 0.133448 9.232505 -11: 225 A -0.748183 0.101035 9.545632 -11: 226 G -0.319660 0.124175 8.391173 -11: 227 C 0.378006 0.156383 8.119080 -11: 228 A -1.101353 0.141359 10.804850 -11: 229 T 0.620295 0.131042 7.888006 -11: 230 T 0.768833 0.129655 9.145187 -11: 231 G -0.308139 0.112967 7.413807 -11: 232 C -0.390315 0.104708 8.321935 -11: 233 T 0.609402 0.100894 7.907361 -11: 234 T 0.511661 0.128142 7.269997 -11: 235 G -0.543451 0.131024 8.136074 -11: 236 G -0.539892 0.113326 8.039516 -11: 237 C 0.127446 0.134036 7.850091 -11: 238 A -0.689555 0.131527 8.987924 -11: 239 T 1.098684 0.219829 8.122150 -11: 240 G -0.439330 0.151727 10.234488 -11: 241 T 0.849519 0.242642 8.151728 -11: 242 A -0.961487 0.140117 10.515985 -11: 243 T 1.121492 0.121881 9.909253 -11: 244 T 0.890865 0.134384 8.647017 -11: 245 A -0.531487 0.119123 6.551543 -11: 246 A -0.385134 0.096265 7.668480 -11: 247 C -0.163333 0.112627 5.875778 -11: 248 T 0.605588 0.114528 7.775008 -11: 249 T 0.675112 0.143279 8.187473 -11: 250 G -0.723699 0.144455 7.137145 -11: 251 T 0.905008 0.155597 7.995557 -11: 252 G -0.562375 0.168496 6.378132 -11: 253 G -1.923897 0.131739 8.425592 -11: 254 A -1.896948 0.180425 6.104567 -11: 255 T 0.193495 0.138014 7.695106 -11: 256 T 0.341957 0.084869 10.568463 -11: 257 T 1.216069 0.124542 9.648637 -11: 258 C 0.482256 0.113858 9.172695 -11: 259 A -0.689106 0.120552 8.982080 -11: 260 G -0.675531 0.109033 8.599357 -11: 261 C 0.451601 0.113131 10.363524 -11: 262 T 1.031305 0.223460 7.815170 -11: 263 A -0.860556 0.155262 8.634956 -11: 264 T 1.089154 0.127932 7.282262 -11: 265 T 0.898332 0.142566 5.900866 -11: 266 A -0.209873 0.147440 8.085433 -11: 267 G -1.280355 0.111232 9.722504 -11: 268 G -2.063174 0.173770 8.325476 -11: 269 T 0.389089 0.115596 8.877566 -11: 270 T 0.611800 0.140888 7.096409 -11: 271 G -0.552371 0.126971 8.976993 -11: 272 T 0.692038 0.201484 7.519362 -11: 273 A -0.575313 0.122363 8.569665 -11: 274 G -0.553898 0.120209 9.196123 -11: 275 C 0.986184 0.116462 8.899857 -11: 276 C 0.720572 0.103241 7.776699 -11: 277 A -0.455965 0.140942 7.969362 -11: 278 G -1.609459 0.141367 7.249808 -11: 279 A -1.680863 0.176600 8.335637 -11: 280 T 0.366627 0.148181 8.708340 -11: 281 T 0.337055 0.093490 8.348364 -11: 282 T 1.217192 0.133183 8.338767 -11: 283 C 0.480539 0.120077 8.525398 -11: 284 G -0.763638 0.159518 4.966094 -11: 285 A -1.204355 0.121198 7.172612 -11: 286 G -0.704060 0.123362 5.461853 -11: 287 C -0.306531 0.106078 7.156648 -11: 288 T 0.177321 0.102567 9.129260 -11: 289 T 0.062746 0.093141 9.145323 -11: 290 T 0.589994 0.086296 8.896487 -11: 291 T 0.660037 0.130286 7.896445 -11: 292 G -1.204711 0.149239 6.632271 -11: 293 A -1.413690 0.178756 8.380780 -11: 294 T 1.769380 0.253790 9.362218 -11: 295 C 0.066969 0.138526 7.254811 -11: 296 T 1.590369 0.130455 9.981124 -11: 297 C 0.779226 0.107566 7.825405 -11: 298 A 0.058411 0.115106 10.096161 -11: 299 A -0.553032 0.126777 6.461285 -11: 300 G -1.672665 0.124556 8.484243 -11: 301 A -1.349303 0.180670 7.800304 -11: 302 T 1.947016 0.203219 10.047570 -11: 303 C 0.660651 0.139906 6.776926 -11: 304 A -0.687962 0.119453 8.050135 -11: 305 G -0.697511 0.116587 6.142865 -11: 306 C 0.275865 0.118263 7.145521 -11: 307 T 0.946051 0.185349 6.634017 -11: 308 G -0.765317 0.165671 7.428227 -11: 309 T 0.735985 0.152480 8.300230 -11: 310 G -0.087674 0.099421 7.215562 -11: 311 C 0.192972 0.136063 7.882113 -11: 312 A -1.177398 0.155136 7.247103 -11: 313 T 0.142725 0.127524 7.383774 -11: 314 T 0.357031 0.094810 6.797712 -11: 315 T 1.307205 0.118985 6.961439 -11: 316 C 0.817911 0.109180 7.022874 -11: 317 A 0.076671 0.132464 5.990082 -11: 318 A -0.248174 0.090725 8.312248 -11: 319 A -0.251293 0.092565 6.900453 -11: 320 A -0.392955 0.094338 9.970884 -11: 321 A -0.820526 0.117872 7.033775 -11: 322 A -0.413460 0.108745 8.064511 -11: 323 C 0.084367 0.137180 6.283593 -11: 324 T 0.665760 0.110255 8.525386 -11: 325 T 0.694108 0.127038 7.100205 -11: 326 A 0.290019 0.081422 8.730023 -11: 327 C 0.493100 0.118404 8.005718 -11: 328 A -0.290916 0.122845 7.431159 -11: 329 T 0.922207 0.194541 8.059299 -11: 330 A -0.460206 0.129805 7.001625 -11: 331 T 1.180897 0.181528 9.033556 -11: 332 G -0.059478 0.122498 6.100799 -11: 333 C 0.565184 0.095036 8.781270 -11: 334 C 0.132142 0.104779 6.733433 -11: 335 T 1.045249 0.164186 9.475885 -11: 336 G -0.234793 0.169953 8.992592 -11: 337 G -1.448083 0.132276 8.187331 -11: 338 G -0.887418 0.124078 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-11: 1943 T 1.586096 0.154807 5.836920 -11: 1944 C 0.672165 0.091509 6.631628 -11: 1945 C 0.395733 0.088656 5.283201 -11: 1946 A 0.188565 0.097391 6.669003 -11: 1947 C 0.464038 0.113316 6.674502 -11: 1948 A 0.080335 0.098916 7.371727 -11: 1949 C 1.068604 0.109409 7.226902 -11: 1950 C 0.353262 0.129540 8.098951 -11: 1951 A -1.157277 0.165124 8.241693 -11: 1952 T 0.526054 0.134600 8.589622 -11: 1953 T 1.166434 0.159083 5.419953 -11: 1954 C -0.113842 0.136453 7.372416 -11: 1955 T 1.457378 0.176288 7.013563 -11: 1956 C 0.551440 0.097529 6.979374 -11: 1957 C 0.397693 0.087882 9.149653 -11: 1958 C -0.215170 0.139028 7.607733 -11: 1959 T 1.083369 0.121763 10.870191 -11: 1960 T 0.922679 0.153800 7.230105 -11: 1961 A -0.623828 0.139952 8.811173 -11: 1962 G -1.470735 0.173279 9.707999 -11: 1963 T 1.541436 0.216199 12.101628 -11: 1964 C -0.067201 0.141050 7.450336 -11: 1965 T 1.451860 0.158044 6.874969 -11: 1966 C 0.479180 0.098001 6.596217 -11: 1967 C 0.202996 0.093669 8.907341 -11: 1968 T 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0.105042 10.131989 -11: 2422 T 0.610315 0.142402 7.821098 -11: 2423 A -0.509389 0.124188 8.367452 -11: 2424 T 1.865307 0.213389 8.577189 -11: 2425 C -0.285130 0.132015 8.693841 -11: 2426 T 0.712352 0.103142 8.734921 -11: 2427 T 0.702125 0.119360 8.465636 -11: 2428 G -0.454370 0.139133 6.677297 -11: 2429 A -0.889888 0.105654 7.063213 -11: 2430 A -0.612717 0.100622 6.496785 -11: 2431 A -0.482843 0.089373 6.459041 -11: 2432 G -0.788980 0.097117 8.601729 -11: 2433 G -1.100369 0.106846 8.579727 -11: 2434 A -0.997239 0.103385 7.535987 -11: 2435 A -1.056842 0.100755 8.140369 -11: 2436 A -0.459279 0.108007 6.731511 -11: 2437 C 0.623288 0.107231 7.820050 -11: 2438 T 0.858313 0.176349 6.003994 -11: 2439 G -1.084953 0.150196 6.055395 -11: 2440 A -0.869009 0.127710 8.655777 -11: 2441 T 1.235910 0.240364 7.794612 -11: 2442 A -0.593642 0.125032 8.567518 -11: 2443 A -1.368976 0.146181 6.379021 -11: 2444 T 0.450249 0.128595 8.304521 -11: 2445 T 0.647157 0.094329 8.275080 -11: 2446 T 0.855570 0.165747 8.865544 -11: 2447 A -0.869500 0.148128 8.635539 -11: 2448 T 1.016806 0.126180 6.783240 -11: 2449 T 0.934109 0.135590 5.799262 -11: 2450 A -0.190011 0.165541 5.765168 -11: 2451 G -1.579310 0.139013 6.632541 -11: 2452 A -1.392860 0.179613 9.002691 -11: 2453 T 1.937622 0.233056 6.749873 -11: 2454 C 0.791008 0.130924 11.193297 -11: 2455 A -0.634283 0.138709 7.394389 -11: 2456 A -1.435102 0.137074 8.732382 -11: 2457 T 0.411677 0.134441 7.055002 -11: 2458 T 0.020365 0.087146 7.830883 -11: 2459 T 0.301429 0.099358 7.043714 -11: 2460 T 1.168829 0.118767 9.188789 -11: 2461 C 0.203687 0.112455 6.882815 -11: 2462 A -0.419316 0.116120 8.197218 -11: 2463 T 0.839162 0.199956 8.918917 -11: 2464 A -0.180696 0.124338 9.331547 -11: 2465 T 1.293857 0.249420 7.602638 -11: 2466 A -0.887355 0.149762 5.549889 -11: 2467 T 0.341485 0.117867 6.881065 -11: 2468 T 0.443477 0.089321 6.225249 -11: 2469 T 0.753738 0.178049 6.947994 -11: 2470 G -1.304200 0.182076 8.767580 -11: 2471 T -0.009280 0.128428 6.792500 -11: 2472 T 0.487305 0.086913 6.731349 -11: 2473 T 0.701778 0.139004 9.072574 -11: 2474 A -0.632148 0.151011 7.663861 -11: 2475 G -1.501971 0.160959 9.896095 -11: 2476 T 1.477685 0.222490 6.882681 -11: 2477 C -0.019275 0.131445 7.644685 -11: 2478 T 1.525151 0.158457 8.600954 -11: 2479 C 0.234485 0.122652 9.623806 -11: 2480 A -0.981593 0.149423 9.349880 -11: 2481 T 0.795708 0.133899 7.221395 -11: 2482 T 0.629048 0.150381 6.792879 -11: 2483 A -0.440255 0.122816 7.981349 -11: 2484 T 1.135065 0.220310 5.852617 -11: 2485 G -0.588957 0.145465 9.084153 -11: 2486 T 0.555543 0.189296 8.444556 -11: 2487 A 0.044901 0.090535 11.300012 -11: 2488 C 0.754661 0.153207 7.209754 -11: 2489 A -0.880086 0.138383 6.563594 -11: 2490 G -1.499489 0.151548 6.445266 -11: 2491 T 0.970226 0.207629 7.510785 -11: 2492 G -0.366052 0.098916 9.912665 -11: 2493 C -0.077704 0.112656 8.420764 -11: 2494 T 1.337637 0.158134 10.394079 -11: 2495 C 0.101407 0.118081 7.919005 -11: 2496 T 0.944159 0.183854 8.847507 -11: 2497 G -0.760394 0.172350 8.238253 -11: 2498 T 0.772344 0.183786 7.875975 -11: 2499 G -0.230083 0.115406 7.038113 -11: 2500 C 0.782667 0.108482 7.371818 -11: 2501 C 0.520093 0.105661 7.549593 -11: 2502 A -0.386618 0.152524 8.564316 -11: 2503 G -1.327087 0.121670 8.743801 -11: 2504 G -1.630094 0.175226 6.612217 -11: 2505 T 0.860153 0.181793 9.313146 -11: 2506 G -0.361116 0.110974 6.589561 -11: 2507 C -0.483553 0.103154 7.624251 -11: 2508 T 0.125646 0.106547 8.924454 -11: 2509 T -0.042156 0.095947 8.411889 -11: 2510 T 0.656011 0.083605 9.774223 -11: 2511 T 0.804385 0.143673 5.922306 -11: 2512 A -0.567298 0.129134 9.713537 -11: 2513 G -1.115471 0.145596 7.203426 -11: 2514 T 0.690164 0.221862 8.720510 -11: 2515 A -0.423683 0.118824 7.145892 -11: 2516 T 1.096181 0.195750 7.263324 -11: 2517 G -0.216749 0.161250 7.357249 + 8/19 Test #8: test_event_table ................. Passed 0.42 sec 12: #one 12: pos base current sd dwell 12: 0 T 0.273674 0.499834 0.755774 @@ -19845,986 +17361,6 @@ 12: 2523 T -0.083219 0.260580 7.076825 12: 2524 A -1.159863 0.143544 8.895527 12: 2525 T -0.833608 0.215293 6.887583 -1: Test: Decoding same as Sloika ...passed -11: 2518 A -0.915567 0.121125 7.266725 -11: 2519 A -1.104245 0.093258 8.343531 -11: 2520 A -0.859199 0.119295 5.980935 -11: 2521 T 1.348033 0.235495 8.838635 -11: 2522 G -0.358679 0.180753 6.450495 -11: 2523 T 0.896318 0.231397 8.746526 -11: 2524 A -0.908689 0.148906 8.971349 -11: 2525 T 1.041364 0.121635 6.086015 -11: 2526 T 0.985021 0.134842 5.246052 -11: 2527 A 0.033159 0.141992 5.567422 -11: 2528 A -0.775147 0.112681 6.530806 -11: 2529 A -0.684542 0.120457 6.426293 -11: 2530 T 1.193941 0.272720 6.821119 -11: 2531 A 0.002836 0.125420 7.754755 -11: 2532 T 1.394111 0.236143 6.436984 -11: 2533 A -0.534562 0.147340 8.196612 -11: 2534 A -1.397349 0.138698 10.413753 -11: 2535 T 0.617100 0.134174 11.144538 -11: 2536 T 1.195748 0.121587 10.719849 -11: 2537 C 0.342699 0.114228 8.982224 -11: 2538 C -0.339650 0.122564 8.833032 -11: 2539 T 0.848846 0.125299 7.807637 -11: 2540 T 0.677303 0.143515 8.062232 -11: 2541 A -0.522863 0.125021 8.011971 -11: 2542 T 1.949371 0.165237 7.177643 -11: 2543 C 0.801567 0.123119 7.050880 -11: 2544 A -0.115000 0.133828 6.593726 -11: 2545 A -0.515641 0.098322 7.434313 -11: 2546 G -0.822046 0.096328 8.631015 -11: 2547 G -1.033882 0.107535 6.583913 -11: 2548 G -1.194242 0.110965 7.492948 -11: 2549 A -1.031019 0.102275 6.661130 -11: 2550 A -1.023207 0.109786 7.207229 -11: 2551 A -0.504388 0.105025 7.412221 -11: 2552 C -0.182506 0.115477 7.469815 -11: 2553 T 0.547961 0.118988 6.603220 -11: 2554 T 1.312931 0.131110 7.506038 -11: 2555 C 0.324776 0.129713 7.398353 -11: 2556 A -1.184006 0.146009 8.213665 -11: 2557 T 0.190093 0.127861 10.452243 -11: 2558 T 0.161490 0.084755 10.488691 -11: 2559 T 0.679578 0.090866 8.518380 -11: 2560 T 0.925310 0.131868 9.402538 -11: 2561 A -0.572931 0.123229 6.886921 -11: 2562 A -0.529326 0.109358 9.802866 -11: 2563 T 1.188065 0.209340 7.158302 -11: 2564 A -0.016534 0.133582 8.344328 -11: 2565 G -0.663711 0.115443 7.089964 -11: 2566 A -0.812119 0.093026 7.237693 -11: 2567 A -0.561913 0.084443 7.972604 -11: 2568 A -0.549165 0.102080 7.383876 -11: 2569 G -1.194124 0.116901 8.093985 -11: 2570 G -1.400602 0.149400 7.793922 -11: 2571 T 0.712189 0.228382 7.661446 -11: 2572 A -0.319708 0.113730 7.512403 -11: 2573 T 0.852776 0.199943 7.483778 -11: 2574 G -0.886043 0.169581 7.712660 -11: 2575 A -0.510101 0.149372 12.968451 -11: 2576 C 0.578918 0.239662 15.791998 -11: 2577 A -0.287985 0.289755 16.163565 -11: 2578 C 0.453661 0.493308 12.813575 -11: #two -11: pos base current sd dwell -11: 0 C -0.567089 0.406852 0.725990 -11: 1 T -0.012934 0.261976 1.659069 -11: 2 T -0.018925 0.130818 4.172311 -11: 3 T 0.183667 0.108589 7.205971 -11: 4 T 1.202287 0.129585 7.227381 -11: 5 C 0.602394 0.081769 7.880511 -11: 6 C 0.195095 0.096445 7.749748 -11: 7 A -0.595408 0.125199 9.454625 -11: 8 T 0.934213 0.171304 9.668634 -11: 9 G -0.006293 0.110276 6.695367 -11: 10 C 0.297319 0.108969 8.243236 -11: 11 A 0.100348 0.092726 7.942172 -11: 12 C 0.489090 0.104246 9.072083 -11: 13 A 0.164973 0.088444 9.613750 -11: 14 C 0.551184 0.107997 7.954717 -11: 15 A 0.264271 0.093366 8.904740 -11: 16 C 0.828658 0.152826 7.841786 -11: 17 A -0.704198 0.137813 8.634315 -11: 18 G -1.488276 0.156768 7.953399 -11: 19 T 0.800526 0.190218 7.391988 -11: 20 G 0.073098 0.099763 8.862245 -11: 21 C 0.793122 0.136435 8.645073 -11: 22 A -0.299430 0.131188 8.592507 -11: 23 A -0.849429 0.099967 7.806887 -11: 24 G -0.642065 0.115077 6.969234 -11: 25 C 0.328415 0.116291 8.513017 -11: 26 T 1.081807 0.233604 6.475547 -11: 27 G -1.113590 0.213599 7.320964 -11: 28 T 0.586226 0.124431 6.362792 -11: 29 T 0.755988 0.124277 7.231926 -11: 30 G -0.506207 0.172591 7.587162 -11: 31 A -1.624165 0.127255 6.963428 -11: 32 A -1.210819 0.176532 5.581928 -11: 33 T 1.949067 0.230863 8.231250 -11: 34 C 0.562941 0.123182 7.832796 -11: 35 C 0.111175 0.100858 10.715937 -11: 36 T 0.994072 0.181670 13.152797 -11: 37 G -0.023698 0.111157 11.838057 -11: 38 C 0.962282 0.119993 10.217363 -11: 39 C 0.178739 0.129730 10.651853 -11: 40 A -1.276448 0.166579 6.977007 -11: 41 T 0.564078 0.131272 10.422256 -11: 42 T 1.346026 0.151846 8.278642 -11: 43 C 0.168362 0.106042 10.820049 -11: 44 T 0.961573 0.162643 10.849053 -11: 45 G -0.291887 0.157651 9.733360 -11: 46 G -1.011655 0.111495 10.486591 -11: 47 G -1.218128 0.125832 9.257298 -11: 48 G -1.710248 0.118811 11.422140 -11: 49 G -1.815202 0.179771 10.414753 -11: 50 T 1.314085 0.203422 11.195716 -11: 51 C 0.090411 0.104788 11.612720 -11: 52 T 0.917896 0.148009 8.516947 -11: 53 G -0.449273 0.139129 9.018593 -11: 54 G -1.410107 0.136983 6.571146 -11: 55 A -0.971984 0.103755 5.724468 -11: 56 G -1.249781 0.116755 5.563566 -11: 57 G -2.009034 0.129456 7.029490 -11: 58 A -1.260618 0.147388 5.991996 -11: 59 T 1.204884 0.275936 7.157937 -11: 60 G -0.541390 0.179276 6.577071 -11: 61 G -1.357046 0.154742 6.066598 -11: 62 T 0.661346 0.201625 7.483723 -11: 63 G -0.660695 0.157062 4.952695 -11: 64 G -0.770706 0.134582 7.934171 -11: 65 C 0.611252 0.108521 8.290509 -11: 66 C 0.325545 0.099361 6.999836 -11: 67 C 0.092946 0.134596 6.507540 -11: 68 T 1.811412 0.231651 7.012805 -11: 69 C -0.246880 0.139257 8.654539 -11: 70 T 0.637672 0.125534 6.862917 -11: 71 T 1.145952 0.142466 6.115646 -11: 72 C 0.038037 0.138173 5.464927 -11: 73 T 1.514442 0.166353 6.547384 -11: 74 C 0.473363 0.120532 5.927319 -11: 75 A -0.125691 0.099000 7.104936 -11: 76 C -0.168519 0.120849 6.318948 -11: 77 T 0.968403 0.115135 7.237115 -11: 78 T 0.728910 0.133106 7.271114 -11: 79 A -0.287475 0.118699 9.253490 -11: 80 G -0.676691 0.111780 8.975709 -11: 81 C -0.074481 0.130193 6.937509 -11: 82 T 1.407337 0.146096 7.500476 -11: 83 C 0.557348 0.085134 9.071583 -11: 84 C 0.686977 0.079431 9.227794 -11: 85 C 0.410279 0.092271 6.858861 -11: 86 A -0.030673 0.095358 7.511538 -11: 87 C 0.663608 0.112173 5.832020 -11: 88 T 1.123708 0.167164 6.818037 -11: 89 A -0.132765 0.139836 7.777390 -11: 90 G -1.133021 0.119187 7.884531 -11: 91 G -0.536272 0.119268 9.111597 -11: 92 C 0.578599 0.157770 9.264873 -11: 93 A -0.822460 0.136928 9.320503 -11: 94 G -1.495802 0.153620 9.647590 -11: 95 T 0.860749 0.188610 10.367661 -11: 96 G -0.238394 0.105254 9.087975 -11: 97 C 0.652895 0.088752 11.182570 -11: 98 C 0.531828 0.080464 10.909603 -11: 99 C 0.744176 0.086503 8.365096 -11: 100 C 0.537896 0.100124 8.604947 -11: 101 G -0.472124 0.141074 8.922783 -11: 102 A -0.675738 0.105187 10.826878 -11: 103 G -1.113469 0.123626 9.030117 -11: 104 A -1.249234 0.098668 10.889113 -11: 105 G -1.420869 0.142600 8.838591 -11: 106 T 0.967830 0.191691 11.183747 -11: 107 G -0.154811 0.154951 12.424185 -11: 108 G -0.877192 0.111718 13.630701 -11: 109 G -1.392693 0.118180 14.060604 -11: 110 G -2.019839 0.158906 9.967226 -11: 111 A -0.821110 0.143632 8.131306 -11: 112 C 0.244980 0.129555 6.132331 -11: 113 T 0.833817 0.174406 7.439274 -11: 114 G -0.477293 0.154393 6.806642 -11: 115 T 0.879507 0.198266 7.413123 -11: 116 A -0.166290 0.137111 6.969861 -11: 117 G -0.809989 0.118510 5.972837 -11: 118 G -1.096265 0.112571 5.752136 -11: 119 G -1.142916 0.113507 6.639029 -11: 120 G -1.625339 0.141555 6.929274 -11: 121 G -1.841882 0.204728 7.723756 -11: 122 T 1.422294 0.190887 7.002568 -11: 123 C 0.719325 0.103775 7.180200 -11: 124 C 0.647914 0.120234 5.044057 -11: 125 A -0.600306 0.137479 5.229167 -11: 126 A -0.340502 0.108069 6.417711 -11: 127 C 0.896320 0.111770 5.418952 -11: 128 C 0.698899 0.095262 5.441008 -11: 129 C 0.835089 0.091536 6.381198 -11: 130 C 0.594193 0.095516 7.102755 -11: 131 A 0.363269 0.112109 6.968712 -11: 132 C 0.589368 0.148272 9.504383 -11: 133 A -1.085333 0.183485 6.815937 -11: 134 T 0.509537 0.140155 8.114100 -11: 135 T 1.245548 0.139209 7.215868 -11: 136 C 0.465387 0.098322 8.493505 -11: 137 C 0.574981 0.094083 8.725843 -11: 138 C 0.520754 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-0.599169 0.142846 9.561185 -11: 891 G -2.040537 0.183426 6.739369 -11: 892 T 0.261232 0.129506 8.050735 -11: 893 T 1.060579 0.114275 6.553238 -11: 894 C 0.279131 0.095208 9.010327 -11: 895 C -0.058399 0.136005 5.942486 -11: 896 T 1.666749 0.168682 8.734541 -11: 897 C 0.402172 0.121803 6.591431 -11: 898 A -0.430077 0.124044 10.079443 -11: 899 T 1.026753 0.262948 7.298214 -11: 900 G -0.917962 0.169307 7.500510 -11: 901 T 1.495888 0.151117 6.587151 -11: 902 C 0.559588 0.094205 6.044206 -11: 903 C 0.000330 0.106290 6.581825 -11: 904 A -0.687153 0.139503 8.554200 -11: 905 T 1.775510 0.209827 6.728579 -11: 906 C 0.419352 0.117686 7.056949 -11: 907 T 1.038706 0.202613 5.529882 -11: 908 A -0.038819 0.116256 8.581842 -11: 909 T 0.954602 0.199307 7.951537 -11: 910 G -0.948363 0.161215 7.619009 -11: 911 A -0.660815 0.139170 6.721110 -11: 912 C 0.904204 0.117630 9.606360 -11: 913 C 0.255411 0.100457 7.447389 -11: 914 A 0.078750 0.085782 8.936720 -11: 915 C 0.690872 0.107165 7.216995 12: 2526 T 1.226972 0.187758 8.868389 12: 2527 A 0.326663 0.163646 8.637415 12: 2528 A 0.776825 0.159115 7.422452 @@ -23436,7 +19972,3507 @@ 12: 603 G -0.572062 0.335164 12.230330 12: 604 C 0.561030 0.467363 9.792212 12: 605 T -0.235200 0.581865 6.671800 - 9/19 Test #12: test_squiggle_r10 ................ Passed 2.26 sec +11: #one +11: pos base current sd dwell +11: 0 T -0.010010 0.502173 1.176593 +11: 1 G -0.950617 0.348543 2.088944 +11: 2 T 0.736577 0.165384 4.633705 +11: 3 T 0.642673 0.129803 5.466540 +11: 4 G -0.697024 0.139663 7.290120 +11: 5 G -0.480742 0.109040 7.654729 +11: 6 C 0.391611 0.138395 6.948604 +11: 7 A -0.716510 0.123428 5.774498 +11: 8 G -0.374874 0.104234 5.913416 +11: 9 C 0.841809 0.140710 6.172668 +11: 10 A -0.358531 0.161921 6.871535 +11: 11 G -1.491872 0.116200 8.760594 +11: 12 A -1.225777 0.153093 6.404626 +11: 13 T 1.240667 0.217671 7.256704 +11: 14 G -0.191318 0.112068 6.538767 +11: 15 C -0.475078 0.106112 8.398643 +11: 16 T 0.309771 0.115460 7.341069 +11: 17 T 1.010499 0.123026 7.554199 +11: 18 C 0.556588 0.091802 7.529613 +11: 19 C 0.691395 0.090875 6.700677 +11: 20 C 0.348363 0.124614 7.505014 +11: 21 A -1.026199 0.166041 7.514484 +11: 22 T 0.342611 0.138214 8.876358 +11: 23 T 0.706096 0.089782 10.853828 +11: 24 T 0.819723 0.164765 8.472437 +11: 25 A -0.973079 0.138152 8.373974 +11: 26 T 0.352361 0.127671 7.860759 +11: 27 T 0.079815 0.088518 7.054143 +11: 28 T 0.236865 0.098577 8.664771 +11: 29 T 0.566542 0.142689 7.519637 +11: 30 G -0.264874 0.106015 7.371053 +11: 31 C 0.791846 0.109663 6.021642 +11: 32 C 0.549050 0.103019 6.142133 +11: 33 A -0.371786 0.158000 6.289701 +11: 34 G -1.404448 0.125610 7.082584 +11: 35 G -2.080340 0.187951 5.692743 +11: 36 T 0.005119 0.117134 7.578292 +11: 37 T -0.173151 0.084602 6.695480 +11: 38 T 0.156755 0.097785 6.817382 +11: 39 T 1.059732 0.141077 8.329947 +11: 40 C -0.541510 0.130655 6.575303 +11: 41 T 0.332809 0.122280 7.291696 +11: 42 T 1.082067 0.131796 7.141840 +11: 43 C 0.290172 0.105185 6.062037 +11: 44 C -0.073962 0.128965 7.155150 +11: 45 T 1.601286 0.228792 7.034566 +11: 46 C -0.115510 0.133252 8.450492 +11: 47 T 0.771245 0.116999 7.242767 +11: 48 T 0.579434 0.129769 8.826072 +11: 49 A -0.246293 0.104990 9.020959 +11: 50 T 1.063296 0.176394 9.056819 +11: 51 A -0.134681 0.090464 8.797022 +11: 52 C 0.045840 0.111981 8.255016 +11: 53 T 1.480872 0.175373 6.328882 +11: 54 C 0.262542 0.105991 8.830772 +11: 55 T 1.036465 0.149759 7.520970 +11: 56 A 0.335850 0.097007 6.485708 +11: 57 C 1.033337 0.132533 6.576474 +11: 58 A -0.023477 0.140189 6.534716 +11: 59 A -0.403958 0.084301 7.745971 +11: 60 G -1.041867 0.116899 6.537789 +11: 61 G -2.020832 0.133692 7.422082 +11: 62 A -1.479739 0.189822 7.333650 +11: 63 T 1.739981 0.246598 5.920569 +11: 64 C -0.365131 0.136795 6.649535 +11: 65 T 0.094386 0.114840 8.190216 +11: 66 T 0.182152 0.103313 6.036790 +11: 67 T 1.234470 0.115655 8.482240 +11: 68 C 0.401845 0.101548 8.495727 +11: 69 C 0.249187 0.092405 10.196221 +11: 70 T 0.941486 0.181003 9.915107 +11: 71 G -1.158329 0.159878 7.397637 +11: 72 A -1.462965 0.182900 9.285784 +11: 73 T 1.772415 0.216077 7.960547 +11: 74 C 0.371497 0.101499 11.488269 +11: 75 C -0.030643 0.142299 6.485806 +11: 76 T 1.675349 0.189174 9.204261 +11: 77 C 0.502611 0.116411 6.165473 +11: 78 T 1.122693 0.169761 8.898212 +11: 79 A -0.167244 0.143298 8.396337 +11: 80 G -1.128837 0.121890 8.533209 +11: 81 G -0.871306 0.119097 9.965734 +11: 82 C 0.033175 0.112943 6.462045 +11: 83 T 0.797424 0.180976 8.928587 +11: 84 G -0.504323 0.186701 6.361394 +11: 85 T 0.685663 0.227486 7.037620 +11: 86 A -0.706554 0.140738 6.726540 +11: 87 T 1.907671 0.185034 5.820261 +11: 88 C 0.808940 0.133685 5.374137 +11: 89 A -0.395138 0.155283 6.029943 +11: 90 G -1.571920 0.120197 7.756402 +11: 91 A -1.193893 0.148370 7.216361 +11: 92 T 1.160641 0.207332 8.183738 +11: 93 G -0.107997 0.118789 6.579356 +11: 94 C 0.595114 0.090726 7.503166 +11: 95 C 0.403194 0.081291 7.783167 +11: 96 C 0.539310 0.089904 6.762851 +11: 97 C 0.693974 0.090316 7.026294 +11: 98 C 0.754526 0.092285 6.201974 +11: 99 C 0.629361 0.089013 6.868381 +11: 100 C 0.338854 0.111799 8.229415 +11: 101 T 1.289501 0.251401 7.462874 +11: 102 G -1.145431 0.212425 6.443044 +11: 103 T 0.084039 0.124874 7.543467 +11: 104 T 0.004212 0.086160 6.749032 +11: 105 T 0.190635 0.100707 8.221657 +11: 106 T 0.528921 0.133780 9.993093 +11: 107 G -0.220093 0.111300 7.531039 +11: 108 C 0.944602 0.113662 6.974422 +11: 109 C 0.601967 0.117033 6.163235 +11: 110 A -0.617178 0.124319 6.257878 +11: 111 A -0.306512 0.103725 6.606534 +11: 112 C 0.784691 0.118363 9.119719 +11: 113 C -0.214595 0.140790 7.401841 +11: 114 T 1.049206 0.122571 9.435512 +11: 115 T 0.773834 0.134920 6.475677 +11: 116 A -0.384758 0.108630 7.902030 +11: 117 G -0.347505 0.105828 7.771430 +11: 118 C 0.291084 0.122589 6.892611 +11: 119 A -0.089011 0.104991 6.938235 +11: 120 C 0.811428 0.095151 8.667236 +11: 121 C 0.524076 0.089829 7.726244 +11: 122 C 0.264877 0.112331 7.119059 +11: 123 T 1.076214 0.227470 6.295970 +11: 124 G -0.689324 0.170158 8.711839 +11: 125 T 0.898852 0.192461 7.121983 +11: 126 G -0.370243 0.104369 8.615682 +11: 127 C -0.434160 0.113973 6.328002 +11: 128 T 0.762096 0.112126 7.456449 +11: 129 T 0.867069 0.140928 8.740055 +11: 130 A -0.448595 0.144167 6.329791 +11: 131 A -1.437285 0.159602 7.604872 +11: 132 T 0.720457 0.143018 9.080451 +11: 133 T 1.212475 0.154500 6.853188 +11: 134 C 0.102629 0.109620 9.241679 +11: 135 T 0.868093 0.213468 7.449694 +11: 136 G -0.809429 0.179892 7.800998 +11: 137 T 1.492153 0.188448 7.040135 +11: 138 C 0.189504 0.123660 7.641791 +11: 139 A -0.239694 0.111241 6.662440 +11: 140 T 1.032503 0.202127 6.866648 +11: 141 A -0.587940 0.117697 7.777905 +11: 142 A -0.557020 0.120158 7.643400 +11: 143 T 1.237921 0.323180 4.939051 +11: 144 A -0.835643 0.150865 6.502275 +11: 145 T 0.432441 0.138723 5.264152 +11: 146 T 0.649908 0.093182 6.801710 +11: 147 T 0.688118 0.133082 8.931256 +11: 148 A -0.469877 0.120374 7.574522 +11: 149 G -0.532246 0.117035 9.471703 +11: 150 C 0.618662 0.119849 7.857930 +11: 151 C -0.482324 0.111230 10.504077 +11: 152 T 0.625815 0.133692 8.081359 +11: 153 T 1.138815 0.143150 8.582520 +11: 154 C 0.075001 0.127083 7.623355 +11: 155 T 1.613816 0.151714 7.429978 +11: 156 C 0.529422 0.123453 7.674767 +11: 157 A -0.618425 0.113077 10.169827 +11: 158 G -0.653490 0.112714 8.254806 +11: 159 C 0.466752 0.106861 10.170794 +11: 160 T 0.897658 0.184083 7.025882 +11: 161 A -0.319519 0.113126 9.771779 +11: 162 T 1.208605 0.223265 7.323045 +11: 163 G -0.679153 0.187851 7.824593 +11: 164 G -1.934744 0.204825 7.802989 +11: 165 T 0.373174 0.119537 11.224396 +11: 166 T 0.500408 0.119147 6.920899 +11: 167 A -0.021215 0.084877 10.040686 +11: 168 C 0.279518 0.136563 6.821445 +11: 169 G -1.137453 0.161528 8.346110 +11: 170 T 1.132178 0.299583 6.144419 +11: 171 G -1.321131 0.192069 7.355206 +11: 172 T 0.105534 0.129006 6.334252 +11: 173 T 0.372542 0.085814 7.996547 +11: 174 T 0.507604 0.147822 5.985894 +11: 175 A -0.395396 0.117411 8.243734 +11: 176 T 1.311672 0.258602 7.098544 +11: 177 G -1.167615 0.185911 7.833342 +11: 178 T -0.072168 0.124134 7.443668 +11: 179 T 0.131212 0.094431 7.748695 +11: 180 T 0.964221 0.120251 8.619419 +11: 181 C 0.394855 0.085581 9.139339 +11: 182 C 0.404589 0.090203 8.176325 +11: 183 C 0.408476 0.104981 9.286902 +11: 184 T 0.913319 0.184944 9.026564 +11: 185 G -1.036021 0.152003 7.706956 +11: 186 A -0.736981 0.110249 10.229517 +11: 187 C -0.324821 0.122916 6.917765 +11: 188 T 0.091993 0.099238 11.205468 +11: 189 T 0.477062 0.089248 9.466480 +11: 190 T 0.895845 0.122006 7.917982 +11: 191 A -0.269520 0.131538 7.546732 +11: 192 G -1.587539 0.122984 7.637352 +11: 193 A -1.699096 0.173881 8.890913 +11: 194 T 0.756964 0.145360 8.548681 +11: 195 T 0.686159 0.158941 6.903464 +11: 196 G -0.696298 0.139380 10.271826 +11: 197 T 0.768339 0.169498 8.867887 +11: 198 G -0.655216 0.159245 9.232305 +11: 199 A -1.331315 0.117833 9.601289 +11: 200 G -2.171115 0.170749 7.580558 +11: 201 T 0.423240 0.130662 7.269081 +11: 202 T 1.113614 0.133694 8.173464 +11: 203 C -0.418292 0.137763 4.893952 +11: 204 T 0.649558 0.107211 6.680825 +11: 205 T 0.661936 0.122945 6.556487 +11: 206 G -0.348749 0.134756 6.292922 +11: 207 A -0.864659 0.113605 7.781948 +11: 208 A -1.077374 0.110413 7.952811 +11: 209 A -1.301381 0.147561 7.753476 +11: 210 T 1.036566 0.145247 6.837223 +11: 211 T 0.699662 0.154459 6.596766 +11: 212 A -0.544419 0.142603 6.686372 +11: 213 T 1.807538 0.179895 7.456210 +11: 214 C 0.560316 0.101739 9.192197 +11: 215 C 0.554555 0.078071 7.636508 +11: 216 C 0.905174 0.084251 7.406614 +11: 217 C 0.723301 0.105557 7.207385 +11: 218 A -0.448092 0.108312 10.383602 +11: 219 G -0.364070 0.104204 8.677763 +11: 220 C 0.347530 0.119462 7.292720 +11: 221 A 0.044570 0.099405 8.369788 +11: 222 C 1.175635 0.108923 7.362573 +11: 223 C 0.867724 0.100999 8.701097 +11: 224 A -0.127487 0.133448 9.232505 +11: 225 A -0.748183 0.101035 9.545632 +11: 226 G -0.319660 0.124175 8.391173 +11: 227 C 0.378006 0.156383 8.119080 +11: 228 A -1.101353 0.141359 10.804850 +11: 229 T 0.620295 0.131042 7.888006 +11: 230 T 0.768833 0.129655 9.145187 +11: 231 G -0.308139 0.112967 7.413807 +11: 232 C -0.390315 0.104708 8.321935 +11: 233 T 0.609402 0.100894 7.907361 +11: 234 T 0.511661 0.128142 7.269997 +11: 235 G -0.543451 0.131024 8.136074 +11: 236 G -0.539892 0.113326 8.039516 +11: 237 C 0.127446 0.134036 7.850091 +11: 238 A -0.689555 0.131527 8.987924 +11: 239 T 1.098684 0.219829 8.122150 +11: 240 G -0.439330 0.151727 10.234488 +11: 241 T 0.849519 0.242642 8.151728 +11: 242 A -0.961487 0.140117 10.515985 +11: 243 T 1.121492 0.121881 9.909253 +11: 244 T 0.890865 0.134384 8.647017 +11: 245 A -0.531487 0.119123 6.551543 +11: 246 A -0.385134 0.096265 7.668480 +11: 247 C -0.163333 0.112627 5.875778 +11: 248 T 0.605588 0.114528 7.775008 +11: 249 T 0.675112 0.143279 8.187473 +11: 250 G -0.723699 0.144455 7.137145 +11: 251 T 0.905008 0.155597 7.995557 +11: 252 G -0.562375 0.168496 6.378132 +11: 253 G -1.923897 0.131739 8.425592 +11: 254 A -1.896948 0.180425 6.104567 +11: 255 T 0.193495 0.138014 7.695106 +11: 256 T 0.341957 0.084869 10.568463 +11: 257 T 1.216069 0.124542 9.648637 +11: 258 C 0.482256 0.113858 9.172695 +11: 259 A -0.689106 0.120552 8.982080 +11: 260 G -0.675531 0.109033 8.599357 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-0.760394 0.172350 8.238253 +11: 2498 T 0.772344 0.183786 7.875975 +11: 2499 G -0.230083 0.115406 7.038113 +11: 2500 C 0.782667 0.108482 7.371818 +11: 2501 C 0.520093 0.105661 7.549593 +11: 2502 A -0.386618 0.152524 8.564316 +11: 2503 G -1.327087 0.121670 8.743801 +11: 2504 G -1.630094 0.175226 6.612217 +11: 2505 T 0.860153 0.181793 9.313146 +11: 2506 G -0.361116 0.110974 6.589561 +11: 2507 C -0.483553 0.103154 7.624251 +11: 2508 T 0.125646 0.106547 8.924454 +11: 2509 T -0.042156 0.095947 8.411889 +11: 2510 T 0.656011 0.083605 9.774223 +11: 2511 T 0.804385 0.143673 5.922306 +11: 2512 A -0.567298 0.129134 9.713537 +11: 2513 G -1.115471 0.145596 7.203426 +11: 2514 T 0.690164 0.221862 8.720510 +11: 2515 A -0.423683 0.118824 7.145892 +11: 2516 T 1.096181 0.195750 7.263324 +11: 2517 G -0.216749 0.161250 7.357249 + 9/19 Test #12: test_squiggle_r10 ................ Passed 1.11 sec +1: Test: Decoding same as Sloika ...passed +11: 2518 A -0.915567 0.121125 7.266725 +11: 2519 A -1.104245 0.093258 8.343531 +11: 2520 A -0.859199 0.119295 5.980935 +11: 2521 T 1.348033 0.235495 8.838635 +11: 2522 G -0.358679 0.180753 6.450495 +11: 2523 T 0.896318 0.231397 8.746526 +11: 2524 A -0.908689 0.148906 8.971349 +11: 2525 T 1.041364 0.121635 6.086015 +11: 2526 T 0.985021 0.134842 5.246052 +11: 2527 A 0.033159 0.141992 5.567422 +11: 2528 A -0.775147 0.112681 6.530806 +11: 2529 A -0.684542 0.120457 6.426293 +11: 2530 T 1.193941 0.272720 6.821119 +11: 2531 A 0.002836 0.125420 7.754755 +11: 2532 T 1.394111 0.236143 6.436984 +11: 2533 A -0.534562 0.147340 8.196612 +11: 2534 A -1.397349 0.138698 10.413753 +11: 2535 T 0.617100 0.134174 11.144538 +11: 2536 T 1.195748 0.121587 10.719849 +11: 2537 C 0.342699 0.114228 8.982224 +11: 2538 C -0.339650 0.122564 8.833032 +11: 2539 T 0.848846 0.125299 7.807637 +11: 2540 T 0.677303 0.143515 8.062232 +11: 2541 A -0.522863 0.125021 8.011971 +11: 2542 T 1.949371 0.165237 7.177643 +11: 2543 C 0.801567 0.123119 7.050880 +11: 2544 A -0.115000 0.133828 6.593726 +11: 2545 A -0.515641 0.098322 7.434313 +11: 2546 G -0.822046 0.096328 8.631015 +11: 2547 G -1.033882 0.107535 6.583913 +11: 2548 G -1.194242 0.110965 7.492948 +11: 2549 A -1.031019 0.102275 6.661130 +11: 2550 A -1.023207 0.109786 7.207229 +11: 2551 A -0.504388 0.105025 7.412221 +11: 2552 C -0.182506 0.115477 7.469815 +11: 2553 T 0.547961 0.118988 6.603220 +11: 2554 T 1.312931 0.131110 7.506038 +11: 2555 C 0.324776 0.129713 7.398353 +11: 2556 A -1.184006 0.146009 8.213665 +11: 2557 T 0.190093 0.127861 10.452243 +11: 2558 T 0.161490 0.084755 10.488691 +11: 2559 T 0.679578 0.090866 8.518380 +11: 2560 T 0.925310 0.131868 9.402538 +11: 2561 A -0.572931 0.123229 6.886921 +11: 2562 A -0.529326 0.109358 9.802866 +11: 2563 T 1.188065 0.209340 7.158302 +11: 2564 A -0.016534 0.133582 8.344328 +11: 2565 G -0.663711 0.115443 7.089964 +11: 2566 A -0.812119 0.093026 7.237693 +11: 2567 A -0.561913 0.084443 7.972604 +11: 2568 A -0.549165 0.102080 7.383876 +11: 2569 G -1.194124 0.116901 8.093985 +11: 2570 G -1.400602 0.149400 7.793922 +11: 2571 T 0.712189 0.228382 7.661446 +11: 2572 A -0.319708 0.113730 7.512403 +11: 2573 T 0.852776 0.199943 7.483778 +11: 2574 G -0.886043 0.169581 7.712660 +11: 2575 A -0.510101 0.149372 12.968451 +11: 2576 C 0.578918 0.239662 15.791998 +11: 2577 A -0.287985 0.289755 16.163565 +11: 2578 C 0.453661 0.493308 12.813575 +11: #two +11: pos base current sd dwell +11: 0 C -0.567089 0.406852 0.725990 +11: 1 T -0.012934 0.261976 1.659069 +11: 2 T -0.018925 0.130818 4.172311 +11: 3 T 0.183667 0.108589 7.205971 +11: 4 T 1.202287 0.129585 7.227381 +11: 5 C 0.602394 0.081769 7.880511 +11: 6 C 0.195095 0.096445 7.749748 +11: 7 A -0.595408 0.125199 9.454625 +11: 8 T 0.934213 0.171304 9.668634 +11: 9 G -0.006293 0.110276 6.695367 +11: 10 C 0.297319 0.108969 8.243236 +11: 11 A 0.100348 0.092726 7.942172 +11: 12 C 0.489090 0.104246 9.072083 +11: 13 A 0.164973 0.088444 9.613750 +11: 14 C 0.551184 0.107997 7.954717 +11: 15 A 0.264271 0.093366 8.904740 +11: 16 C 0.828658 0.152826 7.841786 +11: 17 A -0.704198 0.137813 8.634315 +11: 18 G -1.488276 0.156768 7.953399 +11: 19 T 0.800526 0.190218 7.391988 +11: 20 G 0.073098 0.099763 8.862245 +11: 21 C 0.793122 0.136435 8.645073 +11: 22 A -0.299430 0.131188 8.592507 +11: 23 A -0.849429 0.099967 7.806887 +11: 24 G -0.642065 0.115077 6.969234 +11: 25 C 0.328415 0.116291 8.513017 +11: 26 T 1.081807 0.233604 6.475547 +11: 27 G -1.113590 0.213599 7.320964 +11: 28 T 0.586226 0.124431 6.362792 +11: 29 T 0.755988 0.124277 7.231926 +11: 30 G -0.506207 0.172591 7.587162 +11: 31 A -1.624165 0.127255 6.963428 +11: 32 A -1.210819 0.176532 5.581928 +11: 33 T 1.949067 0.230863 8.231250 +11: 34 C 0.562941 0.123182 7.832796 +11: 35 C 0.111175 0.100858 10.715937 +11: 36 T 0.994072 0.181670 13.152797 +11: 37 G -0.023698 0.111157 11.838057 +11: 38 C 0.962282 0.119993 10.217363 +11: 39 C 0.178739 0.129730 10.651853 +11: 40 A -1.276448 0.166579 6.977007 +11: 41 T 0.564078 0.131272 10.422256 +11: 42 T 1.346026 0.151846 8.278642 +11: 43 C 0.168362 0.106042 10.820049 +11: 44 T 0.961573 0.162643 10.849053 +11: 45 G -0.291887 0.157651 9.733360 +11: 46 G -1.011655 0.111495 10.486591 +11: 47 G -1.218128 0.125832 9.257298 +11: 48 G -1.710248 0.118811 11.422140 +11: 49 G -1.815202 0.179771 10.414753 +11: 50 T 1.314085 0.203422 11.195716 +11: 51 C 0.090411 0.104788 11.612720 +11: 52 T 0.917896 0.148009 8.516947 +11: 53 G -0.449273 0.139129 9.018593 +11: 54 G -1.410107 0.136983 6.571146 +11: 55 A -0.971984 0.103755 5.724468 +11: 56 G -1.249781 0.116755 5.563566 +11: 57 G -2.009034 0.129456 7.029490 +11: 58 A -1.260618 0.147388 5.991996 +11: 59 T 1.204884 0.275936 7.157937 +11: 60 G -0.541390 0.179276 6.577071 +11: 61 G -1.357046 0.154742 6.066598 +11: 62 T 0.661346 0.201625 7.483723 +11: 63 G -0.660695 0.157062 4.952695 +11: 64 G -0.770706 0.134582 7.934171 +11: 65 C 0.611252 0.108521 8.290509 +11: 66 C 0.325545 0.099361 6.999836 +11: 67 C 0.092946 0.134596 6.507540 +11: 68 T 1.811412 0.231651 7.012805 +11: 69 C -0.246880 0.139257 8.654539 +11: 70 T 0.637672 0.125534 6.862917 +11: 71 T 1.145952 0.142466 6.115646 +11: 72 C 0.038037 0.138173 5.464927 +11: 73 T 1.514442 0.166353 6.547384 +11: 74 C 0.473363 0.120532 5.927319 +11: 75 A -0.125691 0.099000 7.104936 +11: 76 C -0.168519 0.120849 6.318948 +11: 77 T 0.968403 0.115135 7.237115 +11: 78 T 0.728910 0.133106 7.271114 +11: 79 A -0.287475 0.118699 9.253490 +11: 80 G -0.676691 0.111780 8.975709 +11: 81 C -0.074481 0.130193 6.937509 +11: 82 T 1.407337 0.146096 7.500476 +11: 83 C 0.557348 0.085134 9.071583 +11: 84 C 0.686977 0.079431 9.227794 +11: 85 C 0.410279 0.092271 6.858861 +11: 86 A -0.030673 0.095358 7.511538 +11: 87 C 0.663608 0.112173 5.832020 +11: 88 T 1.123708 0.167164 6.818037 +11: 89 A -0.132765 0.139836 7.777390 +11: 90 G -1.133021 0.119187 7.884531 +11: 91 G -0.536272 0.119268 9.111597 +11: 92 C 0.578599 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+11: 844 T 0.255131 0.092791 8.588135 +11: 845 T 0.713516 0.137896 6.473870 +11: 846 G -0.362373 0.092092 8.598147 +11: 847 C 0.302514 0.102559 6.239589 +11: 848 T 0.975724 0.152905 6.858846 +11: 849 A -0.164854 0.129591 8.864956 +11: 850 G -0.918838 0.119540 8.615644 +11: 851 A -1.157369 0.108343 9.581136 +11: 852 G -0.432861 0.116334 9.012491 +11: 853 C 0.366391 0.135184 8.388761 +11: 854 A -0.188102 0.108589 8.636544 +11: 855 T 1.042885 0.211262 6.700921 +11: 856 A -0.550947 0.125896 8.879732 +11: 857 A -0.004131 0.099533 7.882665 +11: 858 C 1.159698 0.136215 6.586914 +11: 859 A 0.003951 0.116457 6.592196 +11: 860 A -0.345725 0.094741 6.125848 +11: 861 A -0.438309 0.093210 7.633726 +11: 862 G -0.866830 0.129174 6.764885 +11: 863 A -1.218827 0.102661 7.790866 +11: 864 G -1.466145 0.175113 6.530979 +11: 865 T 1.556775 0.213910 6.484367 +11: 866 C 0.392837 0.127148 6.655433 +11: 867 A -0.182687 0.092227 6.963844 +11: 868 C -0.268179 0.114305 5.636539 +11: 869 T 0.307505 0.113808 7.909169 +11: 870 T 0.142771 0.096504 8.549368 +11: 871 T 0.580446 0.094777 6.232812 +11: 872 T 0.698216 0.167080 6.417217 +11: 873 A -1.049850 0.145317 6.298325 +11: 874 T 0.537734 0.139857 6.244997 +11: 875 T 1.159129 0.128639 7.139950 +11: 876 C 0.439950 0.100820 8.510259 +11: 877 C 0.464227 0.101879 8.170105 +11: 878 T 1.310062 0.193823 7.754385 +11: 879 A -0.548958 0.129724 8.085755 +11: 880 A -0.930684 0.151983 9.393481 +11: 881 T 1.829184 0.221203 8.492952 +11: 882 C 0.542989 0.106711 6.276989 +11: 883 C 0.539053 0.079432 6.704029 +11: 884 C 0.902489 0.088734 6.021105 +11: 885 C 0.891877 0.107413 8.128993 +11: 886 A -0.593008 0.136584 7.303162 +11: 887 A -1.302545 0.161920 8.671335 +11: 888 T 1.119156 0.128456 10.936847 +11: 889 T 0.974762 0.153843 6.356933 +11: 890 A -0.599169 0.142846 9.561185 +11: 891 G -2.040537 0.183426 6.739369 +11: 892 T 0.261232 0.129506 8.050735 +11: 893 T 1.060579 0.114275 6.553238 +11: 894 C 0.279131 0.095208 9.010327 +11: 895 C -0.058399 0.136005 5.942486 +11: 896 T 1.666749 0.168682 8.734541 +11: 897 C 0.402172 0.121803 6.591431 +11: 898 A -0.430077 0.124044 10.079443 +11: 899 T 1.026753 0.262948 7.298214 +11: 900 G -0.917962 0.169307 7.500510 +11: 901 T 1.495888 0.151117 6.587151 +11: 902 C 0.559588 0.094205 6.044206 +11: 903 C 0.000330 0.106290 6.581825 +11: 904 A -0.687153 0.139503 8.554200 +11: 905 T 1.775510 0.209827 6.728579 +11: 906 C 0.419352 0.117686 7.056949 +11: 907 T 1.038706 0.202613 5.529882 +11: 908 A -0.038819 0.116256 8.581842 +11: 909 T 0.954602 0.199307 7.951537 +11: 910 G -0.948363 0.161215 7.619009 +11: 911 A -0.660815 0.139170 6.721110 +11: 912 C 0.904204 0.117630 9.606360 +11: 913 C 0.255411 0.100457 7.447389 +11: 914 A 0.078750 0.085782 8.936720 +11: 915 C 0.690872 0.107165 7.216995 11: 916 C 0.063825 0.125462 7.512218 11: 917 T 1.840280 0.175977 7.643032 11: 918 C 0.707252 0.141712 6.249581 @@ -25077,7 +25113,12 @@ 11: 603 G -0.348534 0.163240 9.530726 11: 604 C 0.161046 0.266937 15.063370 11: 605 T 0.194787 0.502125 16.019979 -10/19 Test #11: test_squiggle_r94 ................ Passed 2.32 sec +10/19 Test #11: test_squiggle_r94 ................ Passed 1.40 sec +1: Test: Decoding of original and vectorised posterior same ...passed +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } +1: Test: Decoding of original and vectorised posterior same with stay penalty ...passed 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.231445 over 12818 blocks (0.903513 per block) 10: block pos 10: 0 -1 @@ -37509,7 +37550,6 @@ 10: 12426 -1 10: 12427 -1 10: 12428 -1 -1: Test: Decoding of original and vectorised posterior same ...passed 10: 12429 -1 10: 12430 -1 10: 12431 -1 @@ -37899,17 +37939,6 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -11/19 Test #10: test_seqmappy .................... Passed 4.68 sec -1: Test: Decoding of original and vectorised posterior same with stay penalty ...passed -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } -3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } -3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Decoding of original and vectorised posterior same with skip penalty ...passed 1: Suite: Test output of vectorised ELU unit 1: Test: Test input all zeros ...passed @@ -37952,24 +37981,29 @@ 1: Test: Test assumptions about bounds -- overlap ...scrappie_unittest: Blocks 3 and 4 don't overlap [3 , 3) -> [4 , 6) 1: 1: passed +11/19 Test #10: test_seqmappy .................... Passed 4.12 sec +6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } +1: Test: Test mapping -- viterbi ...passed 4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG 4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } 4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -12/19 Test #4: test_rawrgrgr_r94_call ........... Passed 8.07 sec -1: Test: Test mapping -- viterbi ...passed -6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 +12/19 Test #4: test_rawrgrgr_r94_call ........... Passed 5.19 sec +1: Test: Test mapping -- forward ...passed 5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG 5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } 5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -13/19 Test #5: test_rawrgrgr_r941_call .......... Passed 8.83 sec 3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA +3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } +3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA 3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } +13/19 Test #5: test_rawrgrgr_r941_call .......... Passed 5.46 sec 3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT -14/19 Test #3: test_raw_call .................... Passed 9.01 sec -1: Test: Test mapping -- forward ...passed -2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } -2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } +14/19 Test #3: test_raw_call .................... Passed 5.48 sec 1: Test: Test mapping -- viterbi with path ...Viterbi mapping path 1: 0, 0, 0, 0, 0, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3 1: , 3, 4, 4, 4, 5, 5, 6, 6, 6, 6, 7, 7, 8, 8, 8, 8, 8, 9, 9, 9 @@ -38022,23 +38056,37 @@ 1: , 156, 156, 156, 156, 156, 156, 157, 157, 157, 157, 157, 157, 157, 158, 158, 158, 158, 159, 159, 160 1: , 160, 160, 160, 160, 160, 160, 161, 161, 161, 161, 161, 161, 161, 161, 161, 162, 162, 162, 162, 162 1: passed +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- forwards score exceeds Viterbi ...vit = -109.542824 fwd = -87.884453 1: passed -7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } -7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- forwards with full band equals forwards ...fwd = -87.884453 fwdB = -87.884453 1: passed 1: Test: Test mapping -- Viterbi with full band equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed +1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi ...vit = -109.542824 vitB = -109.542824 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi ...vit = -109.542824 vitB = -109.542824 +1: passed 6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } 6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA 6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } 6: TCTGGTTTTTTATTATGTTTTATCTTCCATA -15/19 Test #6: test_rawrgrgr_r10_call ........... Passed 12.73 sec -1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi ...vit = -109.542824 vitB = -109.542824 +15/19 Test #6: test_rawrgrgr_r10_call ........... Passed 8.91 sec +1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed -1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi ...vit = -109.542824 vitB = -109.542824 +1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 +1: passed +2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT +2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } +2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } +1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +16/19 Test #2: test_events_call ................. Passed 10.05 sec +1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed 9: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa (score = -35302.484375) 9: idx signal pos base current sd dwell @@ -102437,31 +102485,13 @@ 9: 64392 nan -1 N nan nan nan 9: 64393 nan -1 N nan nan nan 9: 64394 nan -1 N nan nan nan -16/19 Test #9: test_mappy ....................... Passed 14.17 sec -1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 -1: passed -2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -17/19 Test #2: test_events_call ................. Passed 14.59 sec -1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed +17/19 Test #9: test_mappy ....................... Passed 11.12 sec 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed 1: Suite: Functions on scrappie matrices 1: Test: Row normalisation edge case nr 8 ...passed 1: Test: Row normalisation edge case nr 9 ...passed 1: Test: Row normalisation edge case nr 10 ...passed -7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } -7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA -18/19 Test #7: test_rawrnnrf_r94_call ........... Passed 16.89 sec 1: Test: Row normalisation edge case nr 11 ...passed 1: Suite: Test manipulating signal 1: Test: Normalise trimmed signal ...passed @@ -102680,18 +102710,24 @@ 1: tests 71 71 71 0 0 1: asserts 506 506 506 0 n/a 1: -1: Elapsed time = 10.477 seconds -19/19 Test #1: unittest ......................... Passed 17.01 sec +1: Elapsed time = 9.181 seconds +18/19 Test #1: unittest ......................... Passed 11.26 sec +7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG +7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } +7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } +7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 12.79 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 17.02 sec +Total Test time (real) = 12.86 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_avx2' - rm -fr -- /tmp/dh-xdg-rundir-HQ20ZbSU - cd build_avx && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + rm -fr -- /tmp/dh-xdg-rundir-xfdWlNko + cd build_avx && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_avx' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_avx/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_avx/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_avx @@ -102862,103 +102898,7 @@ 13: The vectorised math functions 'src/sse_mathfun.h' are from 13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is 13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. - 1/19 Test #13: test_licence ..................... Passed 0.10 sec -16: Usage: event_table [OPTION...] fast5 [fast5 ...] -16: Scrappie basecaller -- basecall via events -16: -16: --licence, --license Print licensing information -16: -o, --output=filename Write to file rather than stdout -16: --segmentation=chunk:percentile -16: Chunk size and percentile for variance based -16: segmentation -16: -t, --trim=start:end Number of events to trim, as start:end -16: -?, --help Give this help list -16: --usage Give a short usage message -16: -V, --version Print program version -16: -16: Mandatory or optional arguments to long options are also mandatory or optional -16: for any corresponding short options. -16: -16: Report bugs to . -14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies -14: Limited Research Algorithms group. -14: -14: Basic usage: -14: * scrappie events Base call from event based data. -14: * scrappie help Print general help or help about specific Scrappie command. -14: * scrappie licence Print licensing information. -14: * scrappie raw Base call directly from raw signal. -14: * scrappie version Print version information. -14: * scrappie squiggle Create approximate squiggle for sequence -14: * scrappie mappy Map signal to approximate squiggle -14: * scrappie seqmappy Map signal to sequence via basecall posteriors -14: * scrappie event_table Output table of events for read -14: -14: This project began life as a proof (bet) that a base caller could be written -14: in a low level language in under 8 hours. Some of the poor and just plain odd -14: design decisions, along with the lack of documentation, are a result of its -14: inception. In keeping with ONT's fish naming policy, the project was originally -14: called Crappie. -14: -14: Scrappie's purpose is to demonstrate the next generation of base calling and, as -14: such, may change drastically between releases and breaks backwards -14: compatibility. Newer versions may drop support of current features or change their -14: behaviour. -18: Usage: squiggle [OPTION...] fasta [fasta ...] -18: Scrappie squiggler -18: -18: --licence, --license Print licensing information -18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -18: -m, --model=name Squiggle model to use: "squiggle_r94", -18: "squiggle_r94_rna", "squiggle_r10" -18: -o, --output=filename Write to file rather than stdout -18: -p, --prefix=string Prefix to append to name of each read -18: --rescale, --no-rescale Rescale network output -18: -?, --help Give this help list -18: --usage Give a short usage message -18: -V, --version Print program version -18: -18: Mandatory or optional arguments to long options are also mandatory or optional -18: for any corresponding short options. -18: -18: Report bugs to . -17: Usage: raw [OPTION...] fast5 [fast5 ...] -17: Scrappie basecaller -- basecall from raw signal -17: -17: -#, --threads=nparallel Number of reads to call in parallel -17: -f, --format=format Format to output reads (FASTA or SAM) -17: --hdf5-chunk=size Chunk size for HDF5 output -17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -17: 1: quickest, 9: best) -17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from -17: "nochange" or "mean" (default). Not implemented -17: for CRF. -17: --licence, --license Print licensing information -17: --local=penalty Penalty for local basecalling -17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", -17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" -17: -m, --min_prob=probability Minimum bound on probability of match -17: -o, --output=filename Write to file rather than stdout -17: -p, --prefix=string Prefix to append to name of each read -17: --segmentation=chunk:percentile -17: Chunk size and percentile for variance based -17: segmentation -17: --slip, --no-slip Use slipping -17: -s, --skip=penalty Penalty for skipping a base -17: --temperature1=factor Temperature for softmax weights -17: --temperature2=factor Temperature for softmax bias -17: -t, --trim=start:end Number of samples to trim, as start:end -17: --uuid, --no-uuid Output UUID -17: -y, --stay=penalty Penalty for staying -17: -?, --help Give this help list -17: --usage Give a short usage message -17: -V, --version Print program version -17: -17: Mandatory or optional arguments to long options are also mandatory or optional -17: for any corresponding short options. -17: -17: Report bugs to . + 1/19 Test #13: test_licence ..................... Passed 0.16 sec 15: Usage: events [OPTION...] fast5 [fast5 ...] 15: Scrappie basecaller -- basecall via events 15: @@ -102993,7 +102933,6 @@ 15: for any corresponding short options. 15: 15: Report bugs to . -19: scrappie 1.4.0- 8: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 8: #event start mean stdv dwell 8: 0 0 74.501198 0.733543 4 @@ -104220,12 +104159,6 @@ 8: 1221 6258 76.816338 2.426860 4 8: 1222 6262 85.456436 1.318254 5 8: 1223 6267 80.867828 0.746738 8 - 2/19 Test #14: test_help ........................ Passed 0.43 sec - 3/19 Test #15: test_help_events ................. Passed 0.41 sec - 4/19 Test #16: test_help_event_table ............ Passed 0.41 sec - 5/19 Test #17: test_help_raw .................... Passed 0.40 sec - 6/19 Test #18: test_help_squiggle ............... Passed 0.41 sec - 7/19 Test #19: test_version ..................... Passed 0.41 sec 8: 1224 6275 95.260284 2.042039 3 8: 1225 6278 91.679535 1.237831 3 8: 1226 6281 93.763161 0.304587 4 @@ -104489,6 +104422,48 @@ 8: 1484 7598 84.132179 1.992050 4 8: 1485 7602 76.529259 1.929798 5 8: 1486 7607 76.538521 0.721801 4 + 2/19 Test #15: test_help_events ................. Passed 0.22 sec +14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies +14: Limited Research Algorithms group. +14: +14: Basic usage: +14: * scrappie events Base call from event based data. +14: * scrappie help Print general help or help about specific Scrappie command. +14: * scrappie licence Print licensing information. +14: * scrappie raw Base call directly from raw signal. +14: * scrappie version Print version information. +14: * scrappie squiggle Create approximate squiggle for sequence +14: * scrappie mappy Map signal to approximate squiggle +14: * scrappie seqmappy Map signal to sequence via basecall posteriors +14: * scrappie event_table Output table of events for read +14: +14: This project began life as a proof (bet) that a base caller could be written +14: in a low level language in under 8 hours. Some of the poor and just plain odd +14: design decisions, along with the lack of documentation, are a result of its +14: inception. In keeping with ONT's fish naming policy, the project was originally +14: called Crappie. +14: +14: Scrappie's purpose is to demonstrate the next generation of base calling and, as +14: such, may change drastically between releases and breaks backwards +14: compatibility. Newer versions may drop support of current features or change their +14: behaviour. +16: Usage: event_table [OPTION...] fast5 [fast5 ...] +16: Scrappie basecaller -- basecall via events +16: +16: --licence, --license Print licensing information +16: -o, --output=filename Write to file rather than stdout +16: --segmentation=chunk:percentile +16: Chunk size and percentile for variance based +16: segmentation +16: -t, --trim=start:end Number of events to trim, as start:end +16: -?, --help Give this help list +16: --usage Give a short usage message +16: -V, --version Print program version +16: +16: Mandatory or optional arguments to long options are also mandatory or optional +16: for any corresponding short options. +16: +16: Report bugs to . 8: 1487 7611 79.949493 1.268227 3 8: 1488 7614 83.715454 0.151490 3 8: 1489 7617 81.159538 1.573400 5 @@ -115286,6 +115261,24 @@ 8: 12281 63502 52.896313 1.456398 5 8: 12282 63507 44.932232 1.031901 5 8: 12283 63512 43.956787 0.174693 3 +18: Usage: squiggle [OPTION...] fasta [fasta ...] +18: Scrappie squiggler +18: +18: --licence, --license Print licensing information +18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +18: -m, --model=name Squiggle model to use: "squiggle_r94", +18: "squiggle_r94_rna", "squiggle_r10" +18: -o, --output=filename Write to file rather than stdout +18: -p, --prefix=string Prefix to append to name of each read +18: --rescale, --no-rescale Rescale network output +18: -?, --help Give this help list +18: --usage Give a short usage message +18: -V, --version Print program version +18: +18: Mandatory or optional arguments to long options are also mandatory or optional +18: for any corresponding short options. +18: +18: Report bugs to . 8: 12284 63515 45.129791 0.380494 3 8: 12285 63518 46.279644 0.855959 8 8: 12286 63526 44.450684 0.991664 3 @@ -115399,7 +115392,50 @@ 8: 12394 64075 54.637299 0.944376 3 8: 12395 64078 52.637016 1.520129 5 8: 12396 64083 61.066772 1.247263 7 - 8/19 Test #8: test_event_table ................. Passed 1.17 sec +17: Usage: raw [OPTION...] fast5 [fast5 ...] +17: Scrappie basecaller -- basecall from raw signal +17: +17: -#, --threads=nparallel Number of reads to call in parallel +17: -f, --format=format Format to output reads (FASTA or SAM) +17: --hdf5-chunk=size Chunk size for HDF5 output +17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +17: 1: quickest, 9: best) +17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from +17: "nochange" or "mean" (default). Not implemented +17: for CRF. +17: --licence, --license Print licensing information +17: --local=penalty Penalty for local basecalling +17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", +17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" +17: -m, --min_prob=probability Minimum bound on probability of match +17: -o, --output=filename Write to file rather than stdout +17: -p, --prefix=string Prefix to append to name of each read +17: --segmentation=chunk:percentile +17: Chunk size and percentile for variance based +17: segmentation +17: --slip, --no-slip Use slipping +17: -s, --skip=penalty Penalty for skipping a base +17: --temperature1=factor Temperature for softmax weights +17: --temperature2=factor Temperature for softmax bias +17: -t, --trim=start:end Number of samples to trim, as start:end +17: --uuid, --no-uuid Output UUID +17: -y, --stay=penalty Penalty for staying +17: -?, --help Give this help list +17: --usage Give a short usage message +17: -V, --version Print program version +17: +17: Mandatory or optional arguments to long options are also mandatory or optional +17: for any corresponding short options. +17: +17: Report bugs to . +19: scrappie 1.4.0- + 3/19 Test #8: test_event_table ................. Passed 0.55 sec + 4/19 Test #14: test_help ........................ Passed 0.67 sec + 5/19 Test #16: test_help_event_table ............ Passed 0.64 sec + 6/19 Test #17: test_help_raw .................... Passed 0.63 sec + 7/19 Test #18: test_help_squiggle ............... Passed 0.61 sec + 8/19 Test #19: test_version ..................... Passed 0.60 sec 12: #one 12: pos base current sd dwell 12: 0 T 0.273674 0.499834 0.755774 @@ -120448,6 +120484,985 @@ 11: 2515 A -0.423683 0.118824 7.145892 11: 2516 T 1.096181 0.195750 7.263324 11: 2517 G -0.216749 0.161250 7.357249 +11: 2518 A -0.915567 0.121125 7.266725 +11: 2519 A -1.104245 0.093258 8.343531 +11: 2520 A -0.859199 0.119295 5.980935 +11: 2521 T 1.348033 0.235495 8.838635 +11: 2522 G -0.358679 0.180753 6.450495 +11: 2523 T 0.896318 0.231397 8.746526 +11: 2524 A -0.908689 0.148906 8.971349 +11: 2525 T 1.041364 0.121635 6.086015 +11: 2526 T 0.985021 0.134842 5.246052 +11: 2527 A 0.033159 0.141992 5.567422 +11: 2528 A -0.775147 0.112681 6.530806 +11: 2529 A -0.684542 0.120457 6.426293 +11: 2530 T 1.193941 0.272720 6.821119 +11: 2531 A 0.002836 0.125420 7.754755 +11: 2532 T 1.394111 0.236143 6.436984 +11: 2533 A -0.534562 0.147340 8.196612 +11: 2534 A -1.397349 0.138698 10.413753 +11: 2535 T 0.617100 0.134174 11.144538 +11: 2536 T 1.195748 0.121587 10.719849 +11: 2537 C 0.342699 0.114228 8.982224 +11: 2538 C -0.339650 0.122564 8.833032 +11: 2539 T 0.848846 0.125299 7.807637 +11: 2540 T 0.677303 0.143515 8.062232 +11: 2541 A -0.522863 0.125021 8.011971 +11: 2542 T 1.949371 0.165237 7.177643 +11: 2543 C 0.801567 0.123119 7.050880 +11: 2544 A -0.115000 0.133828 6.593726 +11: 2545 A -0.515641 0.098322 7.434313 +11: 2546 G -0.822046 0.096328 8.631015 +11: 2547 G -1.033882 0.107535 6.583913 +11: 2548 G -1.194242 0.110965 7.492948 +11: 2549 A -1.031019 0.102275 6.661130 +11: 2550 A -1.023207 0.109786 7.207229 +11: 2551 A -0.504388 0.105025 7.412221 +11: 2552 C -0.182506 0.115477 7.469815 +11: 2553 T 0.547961 0.118988 6.603220 +11: 2554 T 1.312931 0.131110 7.506038 +11: 2555 C 0.324776 0.129713 7.398353 +11: 2556 A -1.184006 0.146009 8.213665 +11: 2557 T 0.190093 0.127861 10.452243 +11: 2558 T 0.161490 0.084755 10.488691 +11: 2559 T 0.679578 0.090866 8.518380 +11: 2560 T 0.925310 0.131868 9.402538 +11: 2561 A -0.572931 0.123229 6.886921 +11: 2562 A -0.529326 0.109358 9.802866 +11: 2563 T 1.188065 0.209340 7.158302 +11: 2564 A -0.016534 0.133582 8.344328 +11: 2565 G -0.663711 0.115443 7.089964 +11: 2566 A -0.812119 0.093026 7.237693 +11: 2567 A -0.561913 0.084443 7.972604 +11: 2568 A -0.549165 0.102080 7.383876 +11: 2569 G -1.194124 0.116901 8.093985 +11: 2570 G -1.400602 0.149400 7.793922 +11: 2571 T 0.712189 0.228382 7.661446 +11: 2572 A -0.319708 0.113730 7.512403 +11: 2573 T 0.852776 0.199943 7.483778 +11: 2574 G -0.886043 0.169581 7.712660 +11: 2575 A -0.510101 0.149372 12.968451 +11: 2576 C 0.578918 0.239662 15.791998 +11: 2577 A -0.287985 0.289755 16.163565 +11: 2578 C 0.453661 0.493308 12.813575 +11: #two +11: pos base current sd dwell +11: 0 C -0.567089 0.406852 0.725990 +11: 1 T -0.012934 0.261976 1.659069 +11: 2 T -0.018925 0.130818 4.172311 +11: 3 T 0.183667 0.108589 7.205971 +11: 4 T 1.202287 0.129585 7.227381 +11: 5 C 0.602394 0.081769 7.880511 +11: 6 C 0.195095 0.096445 7.749748 +11: 7 A -0.595408 0.125199 9.454625 +11: 8 T 0.934213 0.171304 9.668634 +11: 9 G -0.006293 0.110276 6.695367 +11: 10 C 0.297319 0.108969 8.243236 +11: 11 A 0.100348 0.092726 7.942172 +11: 12 C 0.489090 0.104246 9.072083 +11: 13 A 0.164973 0.088444 9.613750 +11: 14 C 0.551184 0.107997 7.954717 +11: 15 A 0.264271 0.093366 8.904740 +11: 16 C 0.828658 0.152826 7.841786 +11: 17 A -0.704198 0.137813 8.634315 +11: 18 G -1.488276 0.156768 7.953399 +11: 19 T 0.800526 0.190218 7.391988 +11: 20 G 0.073098 0.099763 8.862245 +11: 21 C 0.793122 0.136435 8.645073 +11: 22 A -0.299430 0.131188 8.592507 +11: 23 A -0.849429 0.099967 7.806887 +11: 24 G -0.642065 0.115077 6.969234 +11: 25 C 0.328415 0.116291 8.513017 +11: 26 T 1.081807 0.233604 6.475547 +11: 27 G -1.113590 0.213599 7.320964 +11: 28 T 0.586226 0.124431 6.362792 +11: 29 T 0.755988 0.124277 7.231926 +11: 30 G -0.506207 0.172591 7.587162 +11: 31 A -1.624165 0.127255 6.963428 +11: 32 A -1.210819 0.176532 5.581928 +11: 33 T 1.949067 0.230863 8.231250 +11: 34 C 0.562941 0.123182 7.832796 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0.163646 8.637415 12: 2528 A 0.776825 0.159115 7.422452 @@ -121430,986 +122445,6 @@ 12: 924 G 1.467777 0.122657 8.328823 12: 925 T 1.156436 0.141427 7.031806 12: 926 A 0.296050 0.161997 7.324454 -1: Test: Decoding same as Sloika ...passed -11: 2518 A -0.915567 0.121125 7.266725 -11: 2519 A -1.104245 0.093258 8.343531 -11: 2520 A -0.859199 0.119295 5.980935 -11: 2521 T 1.348033 0.235495 8.838635 -11: 2522 G -0.358679 0.180753 6.450495 -11: 2523 T 0.896318 0.231397 8.746526 -11: 2524 A -0.908689 0.148906 8.971349 -11: 2525 T 1.041364 0.121635 6.086015 -11: 2526 T 0.985021 0.134842 5.246052 -11: 2527 A 0.033159 0.141992 5.567422 -11: 2528 A -0.775147 0.112681 6.530806 -11: 2529 A -0.684542 0.120457 6.426293 -11: 2530 T 1.193941 0.272720 6.821119 -11: 2531 A 0.002836 0.125420 7.754755 -11: 2532 T 1.394111 0.236143 6.436984 -11: 2533 A -0.534562 0.147340 8.196612 -11: 2534 A -1.397349 0.138698 10.413753 -11: 2535 T 0.617100 0.134174 11.144538 -11: 2536 T 1.195748 0.121587 10.719849 -11: 2537 C 0.342699 0.114228 8.982224 -11: 2538 C -0.339650 0.122564 8.833032 -11: 2539 T 0.848846 0.125299 7.807637 -11: 2540 T 0.677303 0.143515 8.062232 -11: 2541 A -0.522863 0.125021 8.011971 -11: 2542 T 1.949371 0.165237 7.177643 -11: 2543 C 0.801567 0.123119 7.050880 -11: 2544 A -0.115000 0.133828 6.593726 -11: 2545 A -0.515641 0.098322 7.434313 -11: 2546 G -0.822046 0.096328 8.631015 -11: 2547 G -1.033882 0.107535 6.583913 -11: 2548 G -1.194242 0.110965 7.492948 -11: 2549 A -1.031019 0.102275 6.661130 -11: 2550 A -1.023207 0.109786 7.207229 -11: 2551 A -0.504388 0.105025 7.412221 -11: 2552 C -0.182506 0.115477 7.469815 -11: 2553 T 0.547961 0.118988 6.603220 -11: 2554 T 1.312931 0.131110 7.506038 -11: 2555 C 0.324776 0.129713 7.398353 -11: 2556 A -1.184006 0.146009 8.213665 -11: 2557 T 0.190093 0.127861 10.452243 -11: 2558 T 0.161490 0.084755 10.488691 -11: 2559 T 0.679578 0.090866 8.518380 -11: 2560 T 0.925310 0.131868 9.402538 -11: 2561 A -0.572931 0.123229 6.886921 -11: 2562 A -0.529326 0.109358 9.802866 -11: 2563 T 1.188065 0.209340 7.158302 -11: 2564 A -0.016534 0.133582 8.344328 -11: 2565 G -0.663711 0.115443 7.089964 -11: 2566 A -0.812119 0.093026 7.237693 -11: 2567 A -0.561913 0.084443 7.972604 -11: 2568 A -0.549165 0.102080 7.383876 -11: 2569 G -1.194124 0.116901 8.093985 -11: 2570 G -1.400602 0.149400 7.793922 -11: 2571 T 0.712189 0.228382 7.661446 -11: 2572 A -0.319708 0.113730 7.512403 -11: 2573 T 0.852776 0.199943 7.483778 -11: 2574 G -0.886043 0.169581 7.712660 -11: 2575 A -0.510101 0.149372 12.968451 -11: 2576 C 0.578918 0.239662 15.791998 -11: 2577 A -0.287985 0.289755 16.163565 -11: 2578 C 0.453661 0.493308 12.813575 -11: #two -11: pos base current sd dwell -11: 0 C -0.567089 0.406852 0.725990 -11: 1 T -0.012934 0.261976 1.659069 -11: 2 T -0.018925 0.130818 4.172311 -11: 3 T 0.183667 0.108589 7.205971 -11: 4 T 1.202287 0.129585 7.227381 -11: 5 C 0.602394 0.081769 7.880511 -11: 6 C 0.195095 0.096445 7.749748 -11: 7 A -0.595408 0.125199 9.454625 -11: 8 T 0.934213 0.171304 9.668634 -11: 9 G -0.006293 0.110276 6.695367 -11: 10 C 0.297319 0.108969 8.243236 -11: 11 A 0.100348 0.092726 7.942172 -11: 12 C 0.489090 0.104246 9.072083 -11: 13 A 0.164973 0.088444 9.613750 -11: 14 C 0.551184 0.107997 7.954717 -11: 15 A 0.264271 0.093366 8.904740 -11: 16 C 0.828658 0.152826 7.841786 -11: 17 A -0.704198 0.137813 8.634315 -11: 18 G -1.488276 0.156768 7.953399 -11: 19 T 0.800526 0.190218 7.391988 -11: 20 G 0.073098 0.099763 8.862245 -11: 21 C 0.793122 0.136435 8.645073 -11: 22 A -0.299430 0.131188 8.592507 -11: 23 A -0.849429 0.099967 7.806887 -11: 24 G -0.642065 0.115077 6.969234 -11: 25 C 0.328415 0.116291 8.513017 -11: 26 T 1.081807 0.233604 6.475547 -11: 27 G -1.113590 0.213599 7.320964 -11: 28 T 0.586226 0.124431 6.362792 -11: 29 T 0.755988 0.124277 7.231926 -11: 30 G -0.506207 0.172591 7.587162 -11: 31 A -1.624165 0.127255 6.963428 -11: 32 A -1.210819 0.176532 5.581928 -11: 33 T 1.949067 0.230863 8.231250 -11: 34 C 0.562941 0.123182 7.832796 -11: 35 C 0.111175 0.100858 10.715937 -11: 36 T 0.994072 0.181670 13.152797 -11: 37 G -0.023698 0.111157 11.838057 -11: 38 C 0.962282 0.119993 10.217363 -11: 39 C 0.178739 0.129730 10.651853 -11: 40 A -1.276448 0.166579 6.977007 -11: 41 T 0.564078 0.131272 10.422256 -11: 42 T 1.346026 0.151846 8.278642 -11: 43 C 0.168362 0.106042 10.820049 -11: 44 T 0.961573 0.162643 10.849053 -11: 45 G -0.291887 0.157651 9.733360 -11: 46 G -1.011655 0.111495 10.486591 -11: 47 G -1.218128 0.125832 9.257298 -11: 48 G -1.710248 0.118811 11.422140 -11: 49 G -1.815202 0.179771 10.414753 -11: 50 T 1.314085 0.203422 11.195716 -11: 51 C 0.090411 0.104788 11.612720 -11: 52 T 0.917896 0.148009 8.516947 -11: 53 G -0.449273 0.139129 9.018593 -11: 54 G -1.410107 0.136983 6.571146 -11: 55 A -0.971984 0.103755 5.724468 -11: 56 G -1.249781 0.116755 5.563566 -11: 57 G -2.009034 0.129456 7.029490 -11: 58 A -1.260618 0.147388 5.991996 -11: 59 T 1.204884 0.275936 7.157937 -11: 60 G -0.541390 0.179276 6.577071 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-11: 814 A -0.048982 0.136611 7.667661 -11: 815 G -0.673795 0.107807 8.502337 -11: 816 G -1.217147 0.101589 10.299090 -11: 817 G -1.611951 0.110976 10.265860 -11: 818 G -0.640753 0.125961 7.859701 -11: 819 C 0.580637 0.142188 8.077310 -11: 820 A -0.341634 0.133210 7.029466 -11: 821 G -0.959960 0.110689 8.284406 -11: 822 A -0.902185 0.106215 7.934765 -11: 823 G -1.298873 0.118918 6.114035 -11: 824 G -0.494665 0.116320 6.819188 -11: 825 C 0.822646 0.139221 6.121214 -11: 826 A -0.150369 0.117922 5.894239 -11: 827 A -0.570269 0.111471 6.815828 -11: 828 G -1.423948 0.130581 7.483780 -11: 829 A -0.923563 0.170974 6.175108 -11: 830 T 1.299830 0.259639 7.799800 -11: 831 A 0.081032 0.098498 5.669043 -11: 832 C 0.519164 0.113976 6.977749 -11: 833 T 0.927801 0.166014 7.477217 -11: 834 A 0.103208 0.106702 8.115875 -11: 835 C 0.921276 0.113067 7.675389 -11: 836 C 0.512071 0.109618 7.445718 -11: 837 C -0.323462 0.136431 6.688476 -11: 838 T 0.715394 0.136307 7.255559 -11: 839 T 1.254659 0.135253 8.804546 -11: 840 C 0.068649 0.125435 8.916435 -11: 841 T 1.549129 0.193008 8.268576 -11: 842 C -0.312058 0.131289 7.824972 -11: 843 T 0.256509 0.125801 7.329017 -11: 844 T 0.255131 0.092791 8.588135 -11: 845 T 0.713516 0.137896 6.473870 -11: 846 G -0.362373 0.092092 8.598147 -11: 847 C 0.302514 0.102559 6.239589 -11: 848 T 0.975724 0.152905 6.858846 -11: 849 A -0.164854 0.129591 8.864956 -11: 850 G -0.918838 0.119540 8.615644 -11: 851 A -1.157369 0.108343 9.581136 -11: 852 G -0.432861 0.116334 9.012491 -11: 853 C 0.366391 0.135184 8.388761 -11: 854 A -0.188102 0.108589 8.636544 -11: 855 T 1.042885 0.211262 6.700921 -11: 856 A -0.550947 0.125896 8.879732 -11: 857 A -0.004131 0.099533 7.882665 -11: 858 C 1.159698 0.136215 6.586914 -11: 859 A 0.003951 0.116457 6.592196 -11: 860 A -0.345725 0.094741 6.125848 -11: 861 A -0.438309 0.093210 7.633726 -11: 862 G -0.866830 0.129174 6.764885 -11: 863 A -1.218827 0.102661 7.790866 -11: 864 G -1.466145 0.175113 6.530979 -11: 865 T 1.556775 0.213910 6.484367 -11: 866 C 0.392837 0.127148 6.655433 -11: 867 A -0.182687 0.092227 6.963844 -11: 868 C -0.268179 0.114305 5.636539 -11: 869 T 0.307505 0.113808 7.909169 -11: 870 T 0.142771 0.096504 8.549368 -11: 871 T 0.580446 0.094777 6.232812 -11: 872 T 0.698216 0.167080 6.417217 -11: 873 A -1.049850 0.145317 6.298325 -11: 874 T 0.537734 0.139857 6.244997 -11: 875 T 1.159129 0.128639 7.139950 -11: 876 C 0.439950 0.100820 8.510259 -11: 877 C 0.464227 0.101879 8.170105 -11: 878 T 1.310062 0.193823 7.754385 -11: 879 A -0.548958 0.129724 8.085755 -11: 880 A -0.930684 0.151983 9.393481 -11: 881 T 1.829184 0.221203 8.492952 -11: 882 C 0.542989 0.106711 6.276989 -11: 883 C 0.539053 0.079432 6.704029 -11: 884 C 0.902489 0.088734 6.021105 -11: 885 C 0.891877 0.107413 8.128993 -11: 886 A -0.593008 0.136584 7.303162 -11: 887 A -1.302545 0.161920 8.671335 -11: 888 T 1.119156 0.128456 10.936847 -11: 889 T 0.974762 0.153843 6.356933 -11: 890 A -0.599169 0.142846 9.561185 -11: 891 G -2.040537 0.183426 6.739369 -11: 892 T 0.261232 0.129506 8.050735 -11: 893 T 1.060579 0.114275 6.553238 -11: 894 C 0.279131 0.095208 9.010327 -11: 895 C -0.058399 0.136005 5.942486 -11: 896 T 1.666749 0.168682 8.734541 -11: 897 C 0.402172 0.121803 6.591431 -11: 898 A -0.430077 0.124044 10.079443 -11: 899 T 1.026753 0.262948 7.298214 -11: 900 G -0.917962 0.169307 7.500510 -11: 901 T 1.495888 0.151117 6.587151 -11: 902 C 0.559588 0.094205 6.044206 -11: 903 C 0.000330 0.106290 6.581825 -11: 904 A -0.687153 0.139503 8.554200 -11: 905 T 1.775510 0.209827 6.728579 -11: 906 C 0.419352 0.117686 7.056949 -11: 907 T 1.038706 0.202613 5.529882 -11: 908 A -0.038819 0.116256 8.581842 -11: 909 T 0.954602 0.199307 7.951537 -11: 910 G -0.948363 0.161215 7.619009 -11: 911 A -0.660815 0.139170 6.721110 -11: 912 C 0.904204 0.117630 9.606360 -11: 913 C 0.255411 0.100457 7.447389 -11: 914 A 0.078750 0.085782 8.936720 -11: 915 C 0.690872 0.107165 7.216995 12: 927 C -0.836543 0.154324 7.840771 12: 928 T 0.824620 0.159619 7.303352 12: 929 T 1.516867 0.156615 7.500090 @@ -124011,7 +124046,34 @@ 12: 575 T 0.531261 0.133317 7.705036 12: 576 T 1.240177 0.109625 8.080192 12: 577 A 1.233392 0.108421 8.062259 -1: Test: Decoding of original and vectorised posterior same ...passed +12: 578 G 0.709108 0.106319 7.812791 +12: 579 C 0.410596 0.087618 8.145637 +12: 580 T 0.457344 0.099777 8.049680 +12: 581 T 0.290740 0.099987 8.435909 +12: 582 T 1.302000 0.130621 7.744569 +12: 583 T 0.773263 0.118159 7.705857 +12: 584 T 1.475547 0.143461 8.661454 +12: 585 C 0.430492 0.170265 7.779425 +12: 586 T 0.839619 0.139641 8.278427 +12: 587 C -0.200776 0.157649 7.510916 +12: 588 T -0.546136 0.182741 8.881922 +12: 589 G 1.832598 0.164956 8.361652 +12: 590 T 1.566273 0.121332 9.116512 +12: 591 A 0.300091 0.186477 8.080286 +12: 592 A 0.461733 0.138491 10.743159 +12: 593 T -0.402121 0.197353 8.996448 +12: 594 T -0.894658 0.115531 9.138332 +12: 595 G -0.542551 0.151287 7.720534 +12: 596 T 1.008739 0.157621 8.185129 +12: 597 A 0.505789 0.128562 7.612628 +12: 598 A 0.966798 0.145344 8.932740 +12: 599 G 0.022977 0.212905 8.173976 +12: 600 T -0.532864 0.153095 10.262908 +12: 601 C 0.737053 0.259955 12.031479 +12: 602 T -0.036625 0.303160 10.349803 +12: 603 G -0.572062 0.335164 12.230330 +12: 604 C 0.561030 0.467363 9.792212 +12: 605 T -0.235200 0.581865 6.671800 11: 916 C 0.063825 0.125462 7.512218 11: 917 T 1.840280 0.175977 7.643032 11: 918 C 0.707252 0.141712 6.249581 @@ -124994,6 +125056,9 @@ 11: 925 A -0.018874 0.089922 6.853956 11: 926 C 0.314718 0.107410 7.636093 11: 927 T 0.989649 0.215371 8.224966 + 9/19 Test #12: test_squiggle_r10 ................ Passed 1.56 sec +1: Test: Decoding same as Sloika ...passed +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } 11: 928 G -0.823620 0.182883 9.532703 11: 929 T 1.573712 0.225036 8.878208 11: 930 C -0.339260 0.145216 8.672433 @@ -125652,36 +125717,10 @@ 11: 603 G -0.348534 0.163240 9.530726 11: 604 C 0.161046 0.266937 15.063370 11: 605 T 0.194787 0.502125 16.019979 - 9/19 Test #11: test_squiggle_r94 ................ Passed 4.17 sec -12: 578 G 0.709108 0.106319 7.812791 -12: 579 C 0.410596 0.087618 8.145637 -12: 580 T 0.457344 0.099777 8.049680 -12: 581 T 0.290740 0.099987 8.435909 -12: 582 T 1.302000 0.130621 7.744569 -12: 583 T 0.773263 0.118159 7.705857 -12: 584 T 1.475547 0.143461 8.661454 -12: 585 C 0.430492 0.170265 7.779425 -12: 586 T 0.839619 0.139641 8.278427 -12: 587 C -0.200776 0.157649 7.510916 -12: 588 T -0.546136 0.182741 8.881922 -12: 589 G 1.832598 0.164956 8.361652 -12: 590 T 1.566273 0.121332 9.116512 -12: 591 A 0.300091 0.186477 8.080286 -12: 592 A 0.461733 0.138491 10.743159 -12: 593 T -0.402121 0.197353 8.996448 -12: 594 T -0.894658 0.115531 9.138332 -12: 595 G -0.542551 0.151287 7.720534 -12: 596 T 1.008739 0.157621 8.185129 -12: 597 A 0.505789 0.128562 7.612628 -12: 598 A 0.966798 0.145344 8.932740 -12: 599 G 0.022977 0.212905 8.173976 -12: 600 T -0.532864 0.153095 10.262908 -12: 601 C 0.737053 0.259955 12.031479 -12: 602 T -0.036625 0.303160 10.349803 -12: 603 G -0.572062 0.335164 12.230330 -12: 604 C 0.561030 0.467363 9.792212 -12: 605 T -0.235200 0.581865 6.671800 -10/19 Test #12: test_squiggle_r10 ................ Passed 4.17 sec +10/19 Test #11: test_squiggle_r94 ................ Passed 1.66 sec +1: Test: Decoding of original and vectorised posterior same ...passed +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Decoding of original and vectorised posterior same with stay penalty ...passed 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.231445 over 12818 blocks (0.903513 per block) 10: block pos @@ -138503,13 +138542,7 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } -11/19 Test #10: test_seqmappy .................... Passed 5.27 sec -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } +11/19 Test #10: test_seqmappy .................... Passed 4.20 sec 1: Test: Decoding of original and vectorised posterior same with skip penalty ...passed 1: Suite: Test output of vectorised ELU unit 1: Test: Test input all zeros ...passed @@ -138552,23 +138585,28 @@ 1: Test: Test assumptions about bounds -- overlap ...scrappie_unittest: Blocks 3 and 4 don't overlap [3 , 3) -> [4 , 6) 1: 1: passed -3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } -3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } -1: Test: Test mapping -- viterbi ...passed -1: Test: Test mapping -- forward ...passed -3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } -3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT -12/19 Test #3: test_raw_call .................... Passed 7.97 sec +6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG 5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } 5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -13/19 Test #5: test_rawrgrgr_r941_call .......... Passed 8.00 sec +12/19 Test #5: test_rawrgrgr_r941_call .......... Passed 4.72 sec +1: Test: Test mapping -- viterbi ...passed +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG 4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } 4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 8.13 sec +13/19 Test #4: test_rawrgrgr_r94_call ........... Passed 5.54 sec +1: Test: Test mapping -- forward ...passed +3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA +3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } +3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } +3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT +14/19 Test #3: test_raw_call .................... Passed 5.86 sec 1: Test: Test mapping -- viterbi with path ...Viterbi mapping path 1: 0, 0, 0, 0, 0, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3 1: , 3, 4, 4, 4, 5, 5, 6, 6, 6, 6, 7, 7, 8, 8, 8, 8, 8, 9, 9, 9 @@ -138621,25 +138659,38 @@ 1: , 156, 156, 156, 156, 156, 156, 157, 157, 157, 157, 157, 157, 157, 158, 158, 158, 158, 159, 159, 160 1: , 160, 160, 160, 160, 160, 160, 161, 161, 161, 161, 161, 161, 161, 161, 161, 162, 162, 162, 162, 162 1: passed -6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 1: Test: Test mapping -- forwards score exceeds Viterbi ...vit = -109.542824 fwd = -87.884453 1: passed +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- forwards with full band equals forwards ...fwd = -87.884453 fwdB = -87.884453 1: passed 1: Test: Test mapping -- Viterbi with full band equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed -2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } -2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed -7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } -7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed +6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } +6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA +6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } +6: TCTGGTTTTTTATTATGTTTTATCTTCCATA +15/19 Test #6: test_rawrgrgr_r10_call ........... Passed 8.69 sec +1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 +1: passed +2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT +2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } +2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +16/19 Test #2: test_events_call ................. Passed 9.19 sec +1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed 9: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa (score = -35302.484375) 9: idx signal pos base current sd dwell 9: 0 nan -1 N nan nan nan @@ -153579,8 +153630,6 @@ 9: 14934 -0.620531 1213 A -0.484980 0.145139 7.547493 9: 14935 -0.553082 1213 A -0.484980 0.145139 7.547493 9: 14936 -0.607042 1213 A -0.484980 0.145139 7.547493 -1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 -1: passed 9: 14937 -0.418184 1213 A -0.484980 0.145139 7.547493 9: 14938 -0.472144 1213 A -0.484980 0.145139 7.547493 9: 14939 -0.445164 1213 A -0.484980 0.145139 7.547493 @@ -174924,11 +174973,6 @@ 9: 36277 -1.106165 2823 G -1.157149 0.167976 7.598295 9: 36278 -1.510859 2824 A -1.438331 0.198584 7.224949 9: 36279 -1.079185 2824 A -1.438331 0.198584 7.224949 -6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } -6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } -6: TCTGGTTTTTTATTATGTTTTATCTTCCATA -15/19 Test #6: test_rawrgrgr_r10_call ........... Passed 14.13 sec 9: 36280 -1.578308 2824 A -1.438331 0.198584 7.224949 9: 36281 -1.092675 2824 A -1.438331 0.198584 7.224949 9: 36282 -1.362471 2824 A -1.438331 0.198584 7.224949 @@ -203044,17 +203088,7 @@ 9: 64392 nan -1 N nan nan nan 9: 64393 nan -1 N nan nan nan 9: 64394 nan -1 N nan nan nan -16/19 Test #9: test_mappy ....................... Passed 14.23 sec -1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -17/19 Test #2: test_events_call ................. Passed 15.82 sec +17/19 Test #9: test_mappy ....................... Passed 10.13 sec 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed 1: Suite: Functions on scrappie matrices @@ -203279,22 +203313,24 @@ 1: tests 71 71 71 0 0 1: asserts 506 506 506 0 n/a 1: -1: Elapsed time = 11.542 seconds -18/19 Test #1: unittest ......................... Passed 16.24 sec +1: Elapsed time = 8.682 seconds +18/19 Test #1: unittest ......................... Passed 10.29 sec 7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG +7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } +7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } 7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 17.76 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 11.62 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 17.80 sec +Total Test time (real) = 11.72 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_avx' - rm -fr -- /tmp/dh-xdg-rundir-i_dEvRcF - cd build_sse4.1 && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + rm -fr -- /tmp/dh-xdg-rundir-yrr7sVXk + cd build_sse4.1 && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse4.1' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_sse4.1/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_sse4.1/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_sse4.1 @@ -203454,99 +203490,6 @@ 1: Test: Simple convolution, antisymmetric filter length 3 ...passed 1: Test: Scrappie convolution, antisymmetric filter length 3 ...passed 1: Suite: Test decoding -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. - 1/19 Test #13: test_licence ..................... Passed 0.12 sec -17: Usage: raw [OPTION...] fast5 [fast5 ...] -17: Scrappie basecaller -- basecall from raw signal -17: -17: -#, --threads=nparallel Number of reads to call in parallel -17: -f, --format=format Format to output reads (FASTA or SAM) -17: --hdf5-chunk=size Chunk size for HDF5 output -17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -17: 1: quickest, 9: best) -17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from -17: "nochange" or "mean" (default). Not implemented -17: for CRF. -17: --licence, --license Print licensing information -17: --local=penalty Penalty for local basecalling -17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", -17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" -17: -m, --min_prob=probability Minimum bound on probability of match -17: -o, --output=filename Write to file rather than stdout -17: -p, --prefix=string Prefix to append to name of each read -17: --segmentation=chunk:percentile -17: Chunk size and percentile for variance based -17: segmentation -17: --slip, --no-slip Use slipping -17: -s, --skip=penalty Penalty for skipping a base -17: --temperature1=factor Temperature for softmax weights -17: --temperature2=factor Temperature for softmax bias -17: -t, --trim=start:end Number of samples to trim, as start:end -17: --uuid, --no-uuid Output UUID -17: -y, --stay=penalty Penalty for staying -17: -?, --help Give this help list -17: --usage Give a short usage message -17: -V, --version Print program version -17: -17: Mandatory or optional arguments to long options are also mandatory or optional -17: for any corresponding short options. -17: -17: Report bugs to . - 2/19 Test #17: test_help_raw .................... Passed 0.11 sec -16: Usage: event_table [OPTION...] fast5 [fast5 ...] -16: Scrappie basecaller -- basecall via events -16: -16: --licence, --license Print licensing information -16: -o, --output=filename Write to file rather than stdout -16: --segmentation=chunk:percentile -16: Chunk size and percentile for variance based -16: segmentation -16: -t, --trim=start:end Number of events to trim, as start:end -16: -?, --help Give this help list -16: --usage Give a short usage message -16: -V, --version Print program version -16: -16: Mandatory or optional arguments to long options are also mandatory or optional -16: for any corresponding short options. -16: -16: Report bugs to . - 3/19 Test #16: test_help_event_table ............ Passed 0.20 sec -14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies -14: Limited Research Algorithms group. -14: -14: Basic usage: -14: * scrappie events Base call from event based data. -14: * scrappie help Print general help or help about specific Scrappie command. -14: * scrappie licence Print licensing information. -14: * scrappie raw Base call directly from raw signal. -14: * scrappie version Print version information. -14: * scrappie squiggle Create approximate squiggle for sequence -14: * scrappie mappy Map signal to approximate squiggle -14: * scrappie seqmappy Map signal to sequence via basecall posteriors -14: * scrappie event_table Output table of events for read -14: -14: This project began life as a proof (bet) that a base caller could be written -14: in a low level language in under 8 hours. Some of the poor and just plain odd -14: design decisions, along with the lack of documentation, are a result of its -14: inception. In keeping with ONT's fish naming policy, the project was originally -14: called Crappie. -14: -14: Scrappie's purpose is to demonstrate the next generation of base calling and, as -14: such, may change drastically between releases and breaks backwards -14: compatibility. Newer versions may drop support of current features or change their -14: behaviour. - 4/19 Test #14: test_help ........................ Passed 0.26 sec 8: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 8: #event start mean stdv dwell 8: 0 0 74.501198 0.733543 4 @@ -215946,6 +215889,113 @@ 8: 12394 64075 54.637299 0.944376 3 8: 12395 64078 52.637016 1.520129 5 8: 12396 64083 61.066772 1.247263 7 +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. +14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies +14: Limited Research Algorithms group. +14: +14: Basic usage: +14: * scrappie events Base call from event based data. +14: * scrappie help Print general help or help about specific Scrappie command. +14: * scrappie licence Print licensing information. +14: * scrappie raw Base call directly from raw signal. +14: * scrappie version Print version information. +14: * scrappie squiggle Create approximate squiggle for sequence +14: * scrappie mappy Map signal to approximate squiggle +14: * scrappie seqmappy Map signal to sequence via basecall posteriors +14: * scrappie event_table Output table of events for read +14: +14: This project began life as a proof (bet) that a base caller could be written +14: in a low level language in under 8 hours. Some of the poor and just plain odd +14: design decisions, along with the lack of documentation, are a result of its +14: inception. In keeping with ONT's fish naming policy, the project was originally +14: called Crappie. +14: +14: Scrappie's purpose is to demonstrate the next generation of base calling and, as +14: such, may change drastically between releases and breaks backwards +14: compatibility. Newer versions may drop support of current features or change their +14: behaviour. +18: Usage: squiggle [OPTION...] fasta [fasta ...] +18: Scrappie squiggler +18: +18: --licence, --license Print licensing information +18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +18: -m, --model=name Squiggle model to use: "squiggle_r94", +18: "squiggle_r94_rna", "squiggle_r10" +18: -o, --output=filename Write to file rather than stdout +18: -p, --prefix=string Prefix to append to name of each read +18: --rescale, --no-rescale Rescale network output +18: -?, --help Give this help list +18: --usage Give a short usage message +18: -V, --version Print program version +18: +18: Mandatory or optional arguments to long options are also mandatory or optional +18: for any corresponding short options. +18: +18: Report bugs to . +16: Usage: event_table [OPTION...] fast5 [fast5 ...] +16: Scrappie basecaller -- basecall via events +16: +16: --licence, --license Print licensing information +16: -o, --output=filename Write to file rather than stdout +16: --segmentation=chunk:percentile +16: Chunk size and percentile for variance based +16: segmentation +16: -t, --trim=start:end Number of events to trim, as start:end +16: -?, --help Give this help list +16: --usage Give a short usage message +16: -V, --version Print program version +16: +16: Mandatory or optional arguments to long options are also mandatory or optional +16: for any corresponding short options. +16: +16: Report bugs to . +17: Usage: raw [OPTION...] fast5 [fast5 ...] +17: Scrappie basecaller -- basecall from raw signal +17: +17: -#, --threads=nparallel Number of reads to call in parallel +17: -f, --format=format Format to output reads (FASTA or SAM) +17: --hdf5-chunk=size Chunk size for HDF5 output +17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +17: 1: quickest, 9: best) +17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from +17: "nochange" or "mean" (default). Not implemented +17: for CRF. +17: --licence, --license Print licensing information +17: --local=penalty Penalty for local basecalling +17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", +17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" +17: -m, --min_prob=probability Minimum bound on probability of match +17: -o, --output=filename Write to file rather than stdout +17: -p, --prefix=string Prefix to append to name of each read +17: --segmentation=chunk:percentile +17: Chunk size and percentile for variance based +17: segmentation +17: --slip, --no-slip Use slipping +17: -s, --skip=penalty Penalty for skipping a base +17: --temperature1=factor Temperature for softmax weights +17: --temperature2=factor Temperature for softmax bias +17: -t, --trim=start:end Number of samples to trim, as start:end +17: --uuid, --no-uuid Output UUID +17: -y, --stay=penalty Penalty for staying +17: -?, --help Give this help list +17: --usage Give a short usage message +17: -V, --version Print program version +17: +17: Mandatory or optional arguments to long options are also mandatory or optional +17: for any corresponding short options. +17: +17: Report bugs to . 15: Usage: events [OPTION...] fast5 [fast5 ...] 15: Scrappie basecaller -- basecall via events 15: @@ -215980,29 +216030,15 @@ 15: for any corresponding short options. 15: 15: Report bugs to . -18: Usage: squiggle [OPTION...] fasta [fasta ...] -18: Scrappie squiggler -18: -18: --licence, --license Print licensing information -18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -18: -m, --model=name Squiggle model to use: "squiggle_r94", -18: "squiggle_r94_rna", "squiggle_r10" -18: -o, --output=filename Write to file rather than stdout -18: -p, --prefix=string Prefix to append to name of each read -18: --rescale, --no-rescale Rescale network output -18: -?, --help Give this help list -18: --usage Give a short usage message -18: -V, --version Print program version -18: -18: Mandatory or optional arguments to long options are also mandatory or optional -18: for any corresponding short options. -18: -18: Report bugs to . 19: scrappie 1.4.0- - 5/19 Test #8: test_event_table ................. Passed 0.54 sec - 6/19 Test #15: test_help_events ................. Passed 0.46 sec - 7/19 Test #18: test_help_squiggle ............... Passed 0.42 sec - 8/19 Test #19: test_version ..................... Passed 0.40 sec + 1/19 Test #8: test_event_table ................. Passed 0.51 sec + 2/19 Test #13: test_licence ..................... Passed 0.64 sec + 3/19 Test #14: test_help ........................ Passed 0.64 sec + 4/19 Test #15: test_help_events ................. Passed 0.62 sec + 5/19 Test #16: test_help_event_table ............ Passed 0.59 sec + 6/19 Test #17: test_help_raw .................... Passed 0.58 sec + 7/19 Test #18: test_help_squiggle ............... Passed 0.58 sec + 8/19 Test #19: test_version ..................... Passed 0.55 sec 12: #one 12: pos base current sd dwell 12: 0 T 0.273674 0.499834 0.755774 @@ -222031,6 +222067,988 @@ 11: 913 C 0.255411 0.100457 7.447389 11: 914 A 0.078750 0.085782 8.936720 11: 915 C 0.690872 0.107165 7.216995 +12: 2526 T 1.226972 0.187758 8.868389 +12: 2527 A 0.326663 0.163646 8.637415 +12: 2528 A 0.776825 0.159115 7.422452 +12: 2529 A -0.622245 0.205832 7.580650 +12: 2530 T -1.265517 0.217479 8.306485 +12: 2531 A 0.628805 0.121661 8.164207 +12: 2532 T 0.769511 0.098043 8.199687 +12: 2533 A 0.350800 0.127996 8.210618 +12: 2534 A -0.141438 0.109709 8.702918 +12: 2535 T 0.242651 0.102963 8.906513 +12: 2536 T 0.491109 0.120859 8.978339 +12: 2537 C -0.153347 0.134612 9.338113 +12: 2538 C 1.066516 0.127692 8.513339 +12: 2539 T 0.594936 0.148811 7.963649 +12: 2540 T -0.379407 0.161337 6.392164 +12: 2541 A -0.659223 0.108110 7.778077 +12: 2542 T -0.576142 0.108834 6.999051 +12: 2543 C -0.843715 0.130818 6.598724 +12: 2544 A -1.437682 0.135279 7.597930 +12: 2545 A -1.514829 0.124043 8.375982 +12: 2546 G -1.103884 0.122612 7.674520 +12: 2547 G -0.764696 0.161371 7.748152 +12: 2548 G 0.175790 0.134796 8.036445 +12: 2549 A -0.004486 0.092964 7.420146 +12: 2550 A -0.341161 0.127355 7.378166 +12: 2551 A -0.928757 0.137549 7.299687 +12: 2552 C -1.420619 0.184846 7.187764 +12: 2553 T 0.516770 0.172238 7.991004 +12: 2554 T 1.209236 0.132782 8.721268 +12: 2555 C 1.472676 0.122889 8.505735 +12: 2556 A 1.316731 0.137611 7.890669 +12: 2557 T -0.069831 0.213390 6.807758 +12: 2558 T -0.617375 0.194515 7.804194 +12: 2559 T 1.544968 0.190930 7.108366 +12: 2560 T 0.668908 0.243240 7.406156 +12: 2561 A -0.883512 0.149727 8.009659 +12: 2562 A -1.634685 0.122577 8.049137 +12: 2563 T -1.398357 0.110037 8.988862 +12: 2564 A -0.786857 0.100302 8.384510 +12: 2565 G -0.620314 0.109937 8.754931 +12: 2566 A -1.176952 0.137542 8.881434 +12: 2567 A -0.128371 0.133560 8.570903 +12: 2568 A -0.713346 0.138379 8.649867 +12: 2569 G 0.599217 0.158987 8.227661 +12: 2570 G -0.482809 0.249785 7.666263 +12: 2571 T -1.283436 0.205650 10.129151 +12: 2572 A 0.217471 0.195993 10.924161 +12: 2573 T -0.527437 0.183608 10.333318 +12: 2574 G 0.289440 0.216070 11.379429 +12: 2575 A -0.470523 0.228475 10.162048 +12: 2576 C -1.309896 0.346120 11.664120 +12: 2577 A 0.710910 0.445684 9.001451 +12: 2578 C -0.044387 0.550503 7.497941 +12: #two +12: pos base current sd dwell +12: 0 C 0.683936 0.292595 0.787175 +12: 1 T 0.285399 0.223970 1.363220 +12: 2 T 0.233159 0.229233 1.925318 +12: 3 T -0.284285 0.202461 3.632945 +12: 4 T 1.513357 0.179336 6.751537 +12: 5 C 0.495119 0.192543 6.420651 +12: 6 C 0.220424 0.123044 7.956814 +12: 7 A -0.270081 0.148077 7.616370 +12: 8 T 0.737105 0.154406 7.992534 +12: 9 G -0.257618 0.139907 7.938873 +12: 10 C 0.238270 0.144361 7.577223 +12: 11 A -0.565925 0.132718 7.805387 +12: 12 C 0.186974 0.157118 8.225278 +12: 13 A -0.566944 0.119921 8.531586 +12: 14 C -0.681718 0.155401 7.449421 +12: 15 A 1.114625 0.177478 8.406658 +12: 16 C 0.209275 0.178806 8.876794 +12: 17 A 0.182029 0.144124 7.857810 +12: 18 G -0.634468 0.142029 7.148503 +12: 19 T -0.808495 0.109849 7.214585 +12: 20 G -0.660106 0.130614 7.163760 +12: 21 C 0.377924 0.144487 6.444206 +12: 22 A 1.238849 0.168886 6.598902 +12: 23 A 0.372003 0.187160 7.691326 +12: 24 G 0.590835 0.115245 7.357205 +12: 25 C 0.507378 0.121377 7.407406 +12: 26 T -0.341736 0.206346 8.269124 +12: 27 G -1.183804 0.146394 8.195521 +12: 28 T -0.588579 0.236768 7.109519 +12: 29 T 1.548155 0.187290 8.619592 +12: 30 G 0.935080 0.159360 7.153718 +12: 31 A 0.080601 0.119322 8.334003 +12: 32 A 0.135833 0.144603 8.254804 +12: 33 T -0.689822 0.163885 7.153272 +12: 34 C -0.442044 0.116712 9.222482 +12: 35 C 0.006143 0.122890 7.686490 +12: 36 T -0.439292 0.176346 7.135783 +12: 37 G 1.580827 0.138243 8.895194 +12: 38 C 1.068271 0.129942 8.509816 +12: 39 C 0.509839 0.125859 8.376747 +12: 40 A 1.481592 0.150149 8.551979 +12: 41 T 0.501036 0.222623 8.407757 +12: 42 T -0.670658 0.131562 10.968962 +12: 43 C -0.698923 0.113698 9.856374 +12: 44 T -0.555862 0.113812 8.696571 +12: 45 G -0.455272 0.135835 8.416758 +12: 46 G 1.250371 0.149751 9.457069 +12: 47 G 0.623332 0.145319 8.499714 +12: 48 G 0.695963 0.143216 7.960942 +12: 49 G -0.249940 0.243618 7.950039 +12: 50 T -1.661689 0.142153 9.528579 +12: 51 C -1.203690 0.122606 8.463405 +12: 52 T -0.716455 0.128440 7.035435 +12: 53 G -0.759977 0.142399 8.437973 +12: 54 G -0.802840 0.157061 7.802762 +12: 55 A 0.680831 0.159626 7.500440 +12: 56 G -0.134592 0.260248 6.134130 +12: 57 G -1.229793 0.165220 8.214905 +12: 58 A 0.003239 0.172415 7.446199 +12: 59 T -0.742153 0.157955 7.368556 +12: 60 G -1.060039 0.135540 8.245991 +12: 61 G 0.171675 0.129316 7.841066 +12: 62 T 0.125342 0.112360 6.897592 +12: 63 G 0.160828 0.112461 7.940848 +12: 64 G 0.412585 0.131637 7.555494 +12: 65 C -0.240946 0.148206 7.376078 +12: 66 C 0.201810 0.116791 8.685833 +12: 67 C 0.887716 0.145968 7.398972 +12: 68 T 0.499432 0.140390 7.761889 +12: 69 C 1.649669 0.170317 7.459800 +12: 70 T 0.892544 0.179992 6.799202 +12: 71 T -0.048452 0.168846 7.006836 +12: 72 C 0.843768 0.133001 8.420102 +12: 73 T 1.146918 0.126127 7.266869 +12: 74 C 1.701908 0.162262 7.973849 +12: 75 A 0.722689 0.272392 6.926387 +12: 76 C -0.422857 0.177529 7.769481 +12: 77 T 0.652839 0.153194 8.006291 +12: 78 T 1.652439 0.156209 8.763206 +12: 79 A 1.067100 0.143712 8.682311 +12: 80 G 0.313558 0.129372 8.313437 +12: 81 C -0.186521 0.119165 7.979121 +12: 82 T -0.849993 0.130804 8.510041 +12: 83 C 0.230951 0.135218 7.679952 +12: 84 C 1.145062 0.130036 7.886291 +12: 85 C 0.615303 0.202166 7.516761 +12: 86 A -0.296616 0.127621 8.316122 +12: 87 C -0.800418 0.133430 7.996579 +12: 88 T 0.446001 0.134251 7.482554 +12: 89 A -0.082318 0.126296 7.080921 +12: 90 G -0.367767 0.136267 8.172821 +12: 91 G 0.886769 0.159156 8.788610 +12: 92 C -0.150809 0.152867 8.720862 +12: 93 A -0.026322 0.113684 9.718911 +12: 94 G 0.280566 0.112469 8.491561 +12: 95 T 0.405291 0.110869 7.902351 +12: 96 G 0.088007 0.145531 8.018662 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0.696285 0.129516 7.877397 -12: 902 C 0.277346 0.107683 8.330823 -12: 903 C 0.999716 0.139050 7.982317 -12: 904 A 0.492418 0.172543 8.041596 -12: 905 T 1.413500 0.161476 9.054226 -12: 906 C 0.196023 0.242968 8.028413 -12: 907 T -0.818297 0.172723 8.410040 -12: 908 A 0.924136 0.144878 8.209350 -12: 909 T 0.485136 0.124072 7.973967 -12: 910 G -0.320418 0.120914 7.193840 -12: 911 A -0.184015 0.118072 8.249662 -12: 912 C -0.572857 0.099377 9.138751 -12: 913 C 0.258631 0.112806 9.424241 -12: 914 A 0.110542 0.128213 8.327389 -12: 915 C -0.632591 0.107078 8.020502 -12: 916 C -0.660664 0.142349 7.863237 -12: 917 T 1.258562 0.158728 8.410666 -12: 918 C 0.959553 0.115968 8.155495 -12: 919 A 1.806448 0.149483 8.726682 -12: 920 G 0.585313 0.214185 8.891140 -12: 921 T 0.637977 0.133747 8.932821 -12: 922 C -0.167980 0.132328 7.867389 -12: 923 T 0.385351 0.135030 8.694772 -12: 924 G 1.467777 0.122657 8.328823 -12: 925 T 1.156436 0.141427 7.031806 -12: 926 A 0.296050 0.161997 7.324454 -11: 562 T 0.676813 0.123413 8.485894 -11: 563 T 1.213495 0.153176 6.588950 -11: 564 C -0.541277 0.140969 6.613651 -11: 565 T 0.498907 0.136248 8.225033 -11: 566 T 1.260255 0.128926 7.437578 -11: 567 C 0.738710 0.120801 9.717486 -11: 568 A -0.649786 0.137775 7.665890 -11: 569 A -1.333848 0.169713 7.748684 -11: 570 T 0.985873 0.141225 8.079935 -11: 571 T 0.868524 0.167108 7.055110 -11: 572 A -0.868175 0.144113 6.014555 -11: 573 T 0.329468 0.124702 6.933790 -11: 574 T 0.087204 0.098567 5.507678 -11: 575 T 0.524725 0.088491 7.925206 -11: 576 T 0.672756 0.134032 5.567116 -11: 577 A -0.407978 0.109209 8.412396 -11: 578 G -0.695554 0.111097 6.831264 -11: 579 C -0.351350 0.103383 8.282887 -11: 580 T 0.185887 0.106988 6.236842 -11: 581 T -0.015127 0.084618 8.605661 -11: 582 T -0.063504 0.090723 8.561688 -11: 583 T 0.257855 0.087696 9.042692 -11: 584 T 1.018560 0.138924 7.208032 -11: 585 C -0.130892 0.118249 8.633611 -11: 586 T 1.389826 0.199611 7.029552 -11: 587 C 0.066669 0.103619 9.932925 -11: 588 T 0.932390 0.181204 9.180959 -11: 589 G -0.404308 0.140632 8.817442 -11: 590 T 0.949407 0.191946 6.905305 -11: 591 A -0.822034 0.121525 8.392059 -11: 592 A -1.356599 0.134774 7.216625 -11: 593 T 0.687378 0.128863 7.542632 -11: 594 T 0.776496 0.146885 8.516963 -11: 595 G -0.528326 0.134746 7.763261 -11: 596 T 0.895498 0.173567 9.419248 -11: 597 A -0.184997 0.154039 7.477816 -11: 598 A -0.961465 0.102563 9.379392 -11: 599 G -1.548730 0.173882 8.797525 -11: 600 T 1.606543 0.270099 8.372373 -11: 601 C 0.056409 0.138974 9.062657 -11: 602 T 0.865641 0.192260 9.394825 -11: 603 G -0.348534 0.163240 9.530726 -11: 604 C 0.161046 0.266937 15.063370 -11: 605 T 0.194787 0.502125 16.019979 - 9/19 Test #11: test_squiggle_r94 ................ Passed 3.50 sec -12: 927 C -0.836543 0.154324 7.840771 -12: 928 T 0.824620 0.159619 7.303352 -12: 929 T 1.516867 0.156615 7.500090 -12: 930 C 0.606284 0.184294 7.298989 -12: 931 A 1.043579 0.110777 7.811698 -12: 932 T 0.678175 0.127680 7.811415 -12: 933 T 0.491481 0.134062 6.527992 -12: 934 G -0.429046 0.157480 6.320044 -12: 935 T 0.922938 0.159099 7.725515 -12: 936 C 0.104719 0.156039 7.035413 -12: 937 C 0.921606 0.131882 7.570480 -12: 938 A 0.468528 0.136761 8.373512 -12: 939 T -0.233883 0.121816 7.398219 -12: 940 A 0.478074 0.124063 7.105650 -12: 941 T 0.704384 0.148297 7.284638 -12: 942 C 0.001589 0.144579 7.488897 -12: 943 A 0.801807 0.133562 8.152879 -12: 944 C 0.364216 0.183241 7.578341 -12: 945 T -0.882561 0.132152 7.587413 -12: 946 A -0.652053 0.173589 7.907542 -12: 947 T 0.675084 0.150344 9.293988 -12: 948 C -0.473562 0.135729 7.185311 -12: 949 A 0.718769 0.122492 6.793722 -12: 950 A 0.741845 0.103252 7.857662 -12: 951 C 0.694930 0.097395 8.786675 -12: 952 A 0.827716 0.121227 8.113749 -12: 953 T -0.060348 0.154111 8.130879 -12: 954 T -0.769988 0.148256 9.636827 -12: 955 T 1.145406 0.149651 9.542684 -12: 956 T 0.801556 0.150560 8.903566 -12: 957 G -0.103633 0.141350 8.525404 -12: 958 G -0.654515 0.114158 9.238344 -12: 959 T -0.109882 0.132522 7.749656 -12: 960 C -0.049007 0.137675 8.080609 -12: 961 A -0.728500 0.159380 9.117578 -12: 962 G 1.056707 0.203967 10.732745 -12: 963 C 0.456521 0.241099 10.887148 -12: 964 C -1.150307 0.354650 12.689854 -12: 965 A -0.271926 0.402136 8.877912 -12: 966 T 0.772311 0.468290 8.768564 -12: 967 C 0.108853 0.646274 4.563419 -12: #three +11: 562 T 0.676813 0.123413 8.485894 +11: 563 T 1.213495 0.153176 6.588950 +11: 564 C -0.541277 0.140969 6.613651 +11: 565 T 0.498907 0.136248 8.225033 +11: 566 T 1.260255 0.128926 7.437578 +11: 567 C 0.738710 0.120801 9.717486 +11: 568 A -0.649786 0.137775 7.665890 +11: 569 A -1.333848 0.169713 7.748684 +11: 570 T 0.985873 0.141225 8.079935 +11: 571 T 0.868524 0.167108 7.055110 +11: 572 A -0.868175 0.144113 6.014555 +11: 573 T 0.329468 0.124702 6.933790 +11: 574 T 0.087204 0.098567 5.507678 +11: 575 T 0.524725 0.088491 7.925206 +11: 576 T 0.672756 0.134032 5.567116 +11: 577 A -0.407978 0.109209 8.412396 +11: 578 G -0.695554 0.111097 6.831264 +11: 579 C -0.351350 0.103383 8.282887 +11: 580 T 0.185887 0.106988 6.236842 +11: 581 T -0.015127 0.084618 8.605661 +11: 582 T -0.063504 0.090723 8.561688 +11: 583 T 0.257855 0.087696 9.042692 +11: 584 T 1.018560 0.138924 7.208032 +11: 585 C -0.130892 0.118249 8.633611 +11: 586 T 1.389826 0.199611 7.029552 +11: 587 C 0.066669 0.103619 9.932925 +11: 588 T 0.932390 0.181204 9.180959 +11: 589 G -0.404308 0.140632 8.817442 +11: 590 T 0.949407 0.191946 6.905305 +11: 591 A -0.822034 0.121525 8.392059 +11: 592 A -1.356599 0.134774 7.216625 +11: 593 T 0.687378 0.128863 7.542632 +11: 594 T 0.776496 0.146885 8.516963 +11: 595 G -0.528326 0.134746 7.763261 +11: 596 T 0.895498 0.173567 9.419248 +11: 597 A -0.184997 0.154039 7.477816 +11: 598 A -0.961465 0.102563 9.379392 +11: 599 G -1.548730 0.173882 8.797525 +11: 600 T 1.606543 0.270099 8.372373 +11: 601 C 0.056409 0.138974 9.062657 +11: 602 T 0.865641 0.192260 9.394825 +11: 603 G -0.348534 0.163240 9.530726 +11: 604 C 0.161046 0.266937 15.063370 +11: 605 T 0.194787 0.502125 16.019979 + 9/19 Test #11: test_squiggle_r94 ................ Passed 1.59 sec +12: 927 C -0.836543 0.154324 7.840771 +12: 928 T 0.824620 0.159619 7.303352 +12: 929 T 1.516867 0.156615 7.500090 +12: 930 C 0.606284 0.184294 7.298989 +12: 931 A 1.043579 0.110777 7.811698 +12: 932 T 0.678175 0.127680 7.811415 +12: 933 T 0.491481 0.134062 6.527992 +12: 934 G -0.429046 0.157480 6.320044 +12: 935 T 0.922938 0.159099 7.725515 +12: 936 C 0.104719 0.156039 7.035413 +12: 937 C 0.921606 0.131882 7.570480 +12: 938 A 0.468528 0.136761 8.373512 +12: 939 T -0.233883 0.121816 7.398219 +12: 940 A 0.478074 0.124063 7.105650 +12: 941 T 0.704384 0.148297 7.284638 +12: 942 C 0.001589 0.144579 7.488897 +12: 943 A 0.801807 0.133562 8.152879 +12: 944 C 0.364216 0.183241 7.578341 +12: 945 T -0.882561 0.132152 7.587413 +12: 946 A -0.652053 0.173589 7.907542 +12: 947 T 0.675084 0.150344 9.293988 +12: 948 C -0.473562 0.135729 7.185311 +12: 949 A 0.718769 0.122492 6.793722 +12: 950 A 0.741845 0.103252 7.857662 +12: 951 C 0.694930 0.097395 8.786675 +12: 952 A 0.827716 0.121227 8.113749 +12: 953 T -0.060348 0.154111 8.130879 +12: 954 T -0.769988 0.148256 9.636827 +12: 955 T 1.145406 0.149651 9.542684 +12: 956 T 0.801556 0.150560 8.903566 +12: 957 G -0.103633 0.141350 8.525404 +12: 958 G -0.654515 0.114158 9.238344 +12: 959 T -0.109882 0.132522 7.749656 +12: 960 C -0.049007 0.137675 8.080609 +12: 961 A -0.728500 0.159380 9.117578 +12: 962 G 1.056707 0.203967 10.732745 +12: 963 C 0.456521 0.241099 10.887148 +12: 964 C -1.150307 0.354650 12.689854 +12: 965 A -0.271926 0.402136 8.877912 +12: 966 T 0.772311 0.468290 8.768564 +12: 967 C 0.108853 0.646274 4.563419 +12: #three 12: pos base current sd dwell 12: 0 A 0.194531 0.466289 0.664201 12: 1 A 0.389374 0.274129 0.702117 @@ -226283,18 +226319,12 @@ 12: 603 G -0.572062 0.335164 12.230330 12: 604 C 0.561030 0.467363 9.792212 12: 605 T -0.235200 0.581865 6.671800 -10/19 Test #12: test_squiggle_r10 ................ Passed 3.85 sec +10/19 Test #12: test_squiggle_r10 ................ Passed 1.66 sec 1: Test: Decoding of original and vectorised posterior same ...passed -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG 5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } -1: Test: Decoding of original and vectorised posterior same with stay penalty ...passed -3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } -3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA 3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG 4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } +1: Test: Decoding of original and vectorised posterior same with stay penalty ...passed 1: Test: Decoding of original and vectorised posterior same with skip penalty ...passed 1: Suite: Test output of vectorised ELU unit 1: Test: Test input all zeros ...passed @@ -239157,22 +239187,30 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -11/19 Test #10: test_seqmappy .................... Passed 7.27 sec +11/19 Test #10: test_seqmappy .................... Passed 4.02 sec +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 1: Test: Test mapping -- viterbi ...passed -3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } -3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT -12/19 Test #3: test_raw_call .................... Passed 7.85 sec 6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 1: Test: Test mapping -- forward ...passed 5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG 5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } 5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -13/19 Test #5: test_rawrgrgr_r941_call .......... Passed 8.08 sec +12/19 Test #5: test_rawrgrgr_r941_call .......... Passed 5.73 sec 4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG 4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } 4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 8.89 sec +13/19 Test #4: test_rawrgrgr_r94_call ........... Passed 5.96 sec +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } +3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA +3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } +3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } +3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT +14/19 Test #3: test_raw_call .................... Passed 6.12 sec 1: Test: Test mapping -- viterbi with path ...Viterbi mapping path 1: 0, 0, 0, 0, 0, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3 1: , 3, 4, 4, 4, 5, 5, 6, 6, 6, 6, 7, 7, 8, 8, 8, 8, 8, 9, 9, 9 @@ -239225,39 +239263,269 @@ 1: , 156, 156, 156, 156, 156, 156, 157, 157, 157, 157, 157, 157, 157, 158, 158, 158, 158, 159, 159, 160 1: , 160, 160, 160, 160, 160, 160, 161, 161, 161, 161, 161, 161, 161, 161, 161, 162, 162, 162, 162, 162 1: passed -2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } -2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 1: Test: Test mapping -- forwards score exceeds Viterbi ...vit = -109.542824 fwd = -87.884453 1: passed -7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } -7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- forwards with full band equals forwards ...fwd = -87.884453 fwdB = -87.884453 1: passed -6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } -6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } -6: TCTGGTTTTTTATTATGTTTTATCTTCCATA -15/19 Test #6: test_rawrgrgr_r10_call ........... Passed 12.03 sec 1: Test: Test mapping -- Viterbi with full band equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed +2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT +2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } +2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +15/19 Test #2: test_events_call ................. Passed 8.99 sec 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed -2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -16/19 Test #2: test_events_call ................. Passed 15.36 sec +6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } +6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA +6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } +6: TCTGGTTTTTTATTATGTTTTATCTTCCATA +16/19 Test #6: test_rawrgrgr_r10_call ........... Passed 10.43 sec 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed +1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Suite: Functions on scrappie matrices +1: Test: Row normalisation edge case nr 8 ...passed +1: Test: Row normalisation edge case nr 9 ...passed +1: Test: Row normalisation edge case nr 10 ...passed +1: Test: Row normalisation edge case nr 11 ...passed +1: Suite: Test manipulating signal +1: Test: Normalise trimmed signal ...passed +1: Test: Trimming of raw signal ...passed +1: Suite: Test sequence-to-squiggle +1: Test: Short sequence to squiggle with network parameterisation ...# Squiggle with network parameters +1: 0 : -7.100222e-02 -1.052642e+00 1.414901e-01 +1: 1 : -7.592717e-01 -1.105536e+00 -4.640082e-01 +1: 2 : 6.517259e-01 -1.619675e+00 -1.508518e+00 +1: 3 : 7.911155e-01 -1.961320e+00 -1.867191e+00 +1: 4 : -4.636365e-02 -2.309864e+00 -2.113610e+00 +1: 5 : 3.253556e-01 -2.105663e+00 -2.100757e+00 +1: 6 : -2.154961e-01 -2.309796e+00 -2.132698e+00 +1: 7 : -3.571292e-02 -2.083405e+00 -2.042708e+00 +1: 8 : 1.599802e+00 -1.887870e+00 -2.025741e+00 +1: 9 : 8.314085e-01 -2.451915e+00 -2.454266e+00 +1: 10 : 6.323134e-01 -2.240801e+00 -2.265080e+00 +1: 11 : -6.508422e-01 -1.993278e+00 -2.375013e+00 +1: 12 : -5.089763e-01 -2.072061e+00 -2.146450e+00 +1: 13 : 8.102253e-01 -2.133760e+00 -2.323975e+00 +1: 14 : 8.833820e-02 -2.125255e+00 -2.124305e+00 +1: 15 : 1.071858e+00 -1.749681e+00 -2.241458e+00 +1: 16 : -2.662371e-01 -2.307614e+00 -2.348673e+00 +1: 17 : 2.526874e-01 -2.248703e+00 -2.320865e+00 +1: 18 : 9.335266e-01 -1.882824e+00 -2.341311e+00 +1: 19 : -3.805782e-01 -1.794182e+00 -2.349835e+00 +1: 20 : -1.473435e+00 -2.014107e+00 -2.131543e+00 +1: 21 : -1.468751e+00 -1.995398e+00 -2.432606e+00 +1: 22 : 5.183253e-01 -1.618705e+00 -2.231401e+00 +1: 23 : -1.178945e+00 -1.925591e+00 -2.094005e+00 +1: 24 : -4.925162e-01 -2.034039e+00 -2.007017e+00 +1: 25 : 7.687722e-01 -1.832321e+00 -2.014938e+00 +1: 26 : -3.909144e-01 -1.958265e+00 -1.838261e+00 +1: 27 : -9.566960e-01 -2.116315e+00 -1.882866e+00 +1: 28 : -1.504592e+00 -1.967939e+00 -1.786390e+00 +1: 29 : -1.584746e+00 -1.986520e+00 -2.088347e+00 +1: 30 : 7.169726e-01 -1.573472e+00 -1.709084e+00 +1: 31 : -5.171665e-01 -1.965511e+00 -1.954707e+00 +1: 32 : -9.571309e-01 -2.094756e+00 -1.757891e+00 +1: 33 : -1.530293e+00 -1.958263e+00 -1.948082e+00 +1: 34 : -7.154673e-01 -2.065584e+00 -2.075371e+00 +1: 35 : 1.340190e-01 -1.944091e+00 -1.914026e+00 +1: 36 : 1.544947e+00 -1.929502e+00 -2.150595e+00 +1: 37 : 7.528057e-01 -2.257131e+00 -1.926496e+00 +1: 38 : 2.406347e-01 -2.208216e+00 -2.034885e+00 +1: 39 : -5.725307e-01 -1.883131e+00 -2.108053e+00 +1: 40 : 1.791558e+00 -1.536994e+00 -2.167133e+00 +1: 41 : 1.642266e-01 -1.959490e+00 -2.100835e+00 +1: 42 : 1.738289e+00 -1.946394e+00 -2.119461e+00 +1: 43 : 9.157931e-01 -2.115188e+00 -2.043411e+00 +1: 44 : 1.088121e-01 -2.110393e+00 -2.055440e+00 +1: 45 : -2.463773e-01 -2.352781e+00 -2.026276e+00 +1: 46 : -2.968376e-01 -2.384610e+00 -1.996209e+00 +1: 47 : -2.164531e-01 -2.447103e+00 -1.998921e+00 +1: 48 : -1.930564e-01 -2.436937e+00 -2.000106e+00 +1: 49 : -1.830719e-01 -2.442657e+00 -2.056543e+00 +1: 50 : -1.657240e-01 -2.444262e+00 -2.075977e+00 +1: 51 : -1.614439e-01 -2.459783e+00 -2.059981e+00 +1: 52 : -1.486868e-01 -2.461916e+00 -2.067977e+00 +1: 53 : -1.427199e-01 -2.468782e+00 -2.054369e+00 +1: 54 : -1.372803e-01 -2.467317e+00 -2.054323e+00 +1: 55 : -1.326133e-01 -2.470593e+00 -2.053199e+00 +1: 56 : -1.302194e-01 -2.473777e+00 -2.056859e+00 +1: 57 : -1.261704e-01 -2.478879e+00 -2.061419e+00 +1: 58 : -1.243679e-01 -2.484729e+00 -2.086884e+00 +1: 59 : -1.173265e-01 -2.494588e+00 -2.133612e+00 +1: 60 : -1.214529e-01 -2.494635e+00 -2.183348e+00 +1: 61 : -1.293582e-01 -2.506257e+00 -2.171958e+00 +1: 62 : -1.191051e-01 -2.497786e+00 -2.145566e+00 +1: 63 : -1.195273e-01 -2.507583e+00 -2.283516e+00 +1: 64 : -1.336055e-01 -2.507490e+00 -2.176662e+00 +1: 65 : -1.368918e-01 -2.529756e+00 -2.196912e+00 +1: 66 : -1.233890e-01 -2.436671e+00 -1.958676e+00 +1: 67 : -1.247224e-01 -2.504339e+00 -2.117309e+00 +1: 68 : -1.032085e-01 -2.471079e+00 -2.012799e+00 +1: 69 : -2.071139e-01 -2.406339e+00 -1.964724e+00 +1: 70 : -2.314971e-01 -2.482945e+00 -2.155415e+00 +1: 71 : -2.581455e-01 -2.333455e+00 -1.886001e+00 +1: 72 : -6.401938e-01 -2.226488e+00 -2.015915e+00 +1: 73 : -7.949377e-01 -2.196288e+00 -2.162808e+00 +1: 74 : -8.079978e-01 -2.362137e+00 -2.147486e+00 +1: 75 : -1.083655e+00 -1.982127e+00 -2.269919e+00 +1: 76 : 1.037179e+00 -1.306082e+00 -2.118258e+00 +1: 77 : -8.516058e-01 -2.005135e+00 -2.194561e+00 +1: 78 : 1.016745e+00 -2.144597e+00 -1.807433e+00 +1: 79 : 7.776245e-01 -1.778889e+00 -1.912730e+00 +1: 80 : -7.908624e-01 -1.996992e+00 -2.312429e+00 +1: 81 : 1.090484e+00 -2.140350e+00 -2.126710e+00 +1: 82 : 1.015684e+00 -2.173901e+00 -2.125421e+00 +1: 83 : 1.260068e-01 -2.163344e+00 -1.811512e+00 +1: 84 : -1.337411e-01 -2.389348e+00 -1.904007e+00 +1: 85 : -3.989461e-01 -2.244048e+00 -1.749086e+00 +1: 86 : -9.542197e-01 -2.211177e+00 -1.788534e+00 +1: 87 : -9.941038e-01 -1.815204e+00 -1.902731e+00 +1: 88 : 2.104662e+00 -1.513922e+00 -2.045570e+00 +1: 89 : 9.999876e-01 -2.050895e+00 -2.244490e+00 +1: 90 : -7.696630e-02 -1.947020e+00 -2.157029e+00 +1: 91 : -9.479131e-01 -2.263503e+00 -2.090311e+00 +1: 92 : -1.952076e+00 -1.847213e+00 -2.148435e+00 +1: 93 : 1.132581e-01 -2.016356e+00 -2.078692e+00 +1: 94 : 2.403807e-01 -2.336333e+00 -2.143608e+00 +1: 95 : 1.057027e+00 -1.977065e+00 -2.303994e+00 +1: 96 : 3.843040e-01 -2.226576e+00 -2.423552e+00 +1: 97 : 7.154019e-01 -1.956273e+00 -2.181569e+00 +1: 98 : 2.062936e-01 -1.297073e+00 -2.801933e+00 +1: 99 : -4.569919e-01 -6.026990e-01 -2.507457e+00 +1: passed +1: Test: Short sequence to squiggle with transformed parameterisation ...# Squiggle with transformed parameters +1: 0 : -7.100222e-02 3.490146e-01 8.680637e-01 +1: 1 : -7.592717e-01 3.310335e-01 1.590436e+00 +1: 2 : 6.517259e-01 1.979630e-01 4.520027e+00 +1: 3 : 7.911155e-01 1.406727e-01 6.470098e+00 +1: 4 : -4.636365e-02 9.927477e-02 8.278069e+00 +1: 5 : 3.253556e-01 1.217649e-01 8.172357e+00 +1: 6 : -2.154961e-01 9.928147e-02 8.437597e+00 +1: 7 : -3.571292e-02 1.245055e-01 7.711463e+00 +1: 8 : 1.599802e+00 1.513939e-01 7.581724e+00 +1: 9 : 8.314085e-01 8.612853e-02 1.163788e+01 +1: 10 : 6.323134e-01 1.063733e-01 9.631895e+00 +1: 11 : -6.508422e-01 1.362481e-01 1.075115e+01 +1: 12 : -5.089763e-01 1.259260e-01 8.554433e+00 +1: 13 : 8.102253e-01 1.183913e-01 1.021620e+01 +1: 14 : 8.833820e-02 1.194025e-01 8.367081e+00 +1: 15 : 1.071858e+00 1.738294e-01 9.407034e+00 +1: 16 : -2.662371e-01 9.949841e-02 1.047167e+01 +1: 17 : 2.526874e-01 1.055360e-01 1.018448e+01 +1: 18 : 9.335266e-01 1.521598e-01 1.039486e+01 +1: 19 : -3.805782e-01 1.662634e-01 1.048384e+01 +1: 20 : -1.473435e+00 1.334395e-01 8.427864e+00 +1: 21 : -1.468751e+00 1.359596e-01 1.138852e+01 +1: 22 : 5.183253e-01 1.981551e-01 9.312908e+00 +1: 23 : -1.178945e+00 1.457896e-01 8.117357e+00 +1: 24 : -4.925162e-01 1.308061e-01 7.441085e+00 +1: 25 : 7.687722e-01 1.600417e-01 7.500263e+00 +1: 26 : -3.909144e-01 1.411030e-01 6.285598e+00 +1: 27 : -9.566960e-01 1.204748e-01 6.572314e+00 +1: 28 : -1.504592e+00 1.397446e-01 5.967870e+00 +1: 29 : -1.584746e+00 1.371720e-01 8.071564e+00 +1: 30 : 7.169726e-01 2.073242e-01 5.523900e+00 +1: 31 : -5.171665e-01 1.400842e-01 7.061852e+00 +1: 32 : -9.571309e-01 1.231003e-01 5.800190e+00 +1: 33 : -1.530293e+00 1.411033e-01 7.015221e+00 +1: 34 : -7.154673e-01 1.267443e-01 7.967502e+00 +1: 35 : 1.340190e-01 1.431173e-01 6.780335e+00 +1: 36 : 1.544947e+00 1.452205e-01 8.589970e+00 +1: 37 : 7.528057e-01 1.046503e-01 6.865414e+00 +1: 38 : 2.406347e-01 1.098965e-01 7.651375e+00 +1: 39 : -5.725307e-01 1.521131e-01 8.232198e+00 +1: 40 : 1.791558e+00 2.150264e-01 8.733207e+00 +1: 41 : 1.642266e-01 1.409303e-01 8.172995e+00 +1: 42 : 1.738289e+00 1.427880e-01 8.326647e+00 +1: 43 : 9.157931e-01 1.206106e-01 7.716887e+00 +1: 44 : 1.088121e-01 1.211904e-01 7.810273e+00 +1: 45 : -2.463773e-01 9.510433e-02 7.585787e+00 +1: 46 : -2.968376e-01 9.212491e-02 7.361097e+00 +1: 47 : -2.164531e-01 8.654394e-02 7.381091e+00 +1: 48 : -1.930564e-01 8.742826e-02 7.389842e+00 +1: 49 : -1.830719e-01 8.692955e-02 7.818890e+00 +1: 50 : -1.657240e-01 8.679014e-02 7.972329e+00 +1: 51 : -1.614439e-01 8.545349e-02 7.845820e+00 +1: 52 : -1.486868e-01 8.527137e-02 7.908805e+00 +1: 53 : -1.427199e-01 8.468797e-02 7.801917e+00 +1: 54 : -1.372803e-01 8.481213e-02 7.801556e+00 +1: 55 : -1.326133e-01 8.453473e-02 7.792791e+00 +1: 56 : -1.302194e-01 8.426598e-02 7.821364e+00 +1: 57 : -1.261704e-01 8.383711e-02 7.857110e+00 +1: 58 : -1.243679e-01 8.334816e-02 8.059758e+00 +1: 59 : -1.173265e-01 8.253042e-02 8.445313e+00 +1: 60 : -1.214529e-01 8.252656e-02 8.875977e+00 +1: 61 : -1.293582e-01 8.157299e-02 8.775450e+00 +1: 62 : -1.191051e-01 8.226693e-02 8.546880e+00 +1: 63 : -1.195273e-01 8.146491e-02 9.811115e+00 +1: 64 : -1.336055e-01 8.147245e-02 8.816829e+00 +1: 65 : -1.368918e-01 7.967844e-02 8.997186e+00 +1: 66 : -1.233890e-01 8.745151e-02 7.089930e+00 +1: 67 : -1.247224e-01 8.172958e-02 8.308747e+00 +1: 68 : -1.032085e-01 8.449367e-02 7.484239e+00 +1: 69 : -2.071139e-01 9.014467e-02 7.132941e+00 +1: 70 : -2.314971e-01 8.349697e-02 8.631474e+00 +1: 71 : -2.581455e-01 9.696014e-02 6.592949e+00 +1: 72 : -6.401938e-01 1.079067e-01 7.507593e+00 +1: 73 : -7.949377e-01 1.112152e-01 8.695518e+00 +1: 74 : -8.079978e-01 9.421863e-02 8.563301e+00 +1: 75 : -1.083655e+00 1.377758e-01 9.678620e+00 +1: 76 : 1.037179e+00 2.708792e-01 8.316633e+00 +1: 77 : -8.516058e-01 1.346421e-01 8.976064e+00 +1: 78 : 1.016745e+00 1.171152e-01 6.094779e+00 +1: 79 : 7.776245e-01 1.688257e-01 6.771546e+00 +1: 80 : -7.908624e-01 1.357430e-01 1.009893e+01 +1: 81 : 1.090484e+00 1.176136e-01 8.387229e+00 +1: 82 : 1.015684e+00 1.137331e-01 8.376424e+00 +1: 83 : 1.260068e-01 1.149402e-01 6.119696e+00 +1: 84 : -1.337411e-01 9.168947e-02 6.712739e+00 +1: 85 : -3.989461e-01 1.060285e-01 5.749343e+00 +1: 86 : -9.542197e-01 1.095716e-01 5.980679e+00 +1: 87 : -9.941038e-01 1.628047e-01 6.704179e+00 +1: 88 : 2.104662e+00 2.200452e-01 7.733565e+00 +1: 89 : 9.999876e-01 1.286197e-01 9.435606e+00 +1: 90 : -7.696630e-02 1.426987e-01 8.645411e+00 +1: 91 : -9.479131e-01 1.039856e-01 8.087430e+00 +1: 92 : -1.952076e+00 1.576759e-01 8.571430e+00 +1: 93 : 1.132581e-01 1.331397e-01 7.994008e+00 +1: 94 : 2.403807e-01 9.668154e-02 8.530156e+00 +1: 95 : 1.057027e+00 1.384751e-01 1.001410e+01 +1: 96 : 3.843040e-01 1.078972e-01 1.128587e+01 +1: 97 : 7.154019e-01 1.413844e-01 8.860198e+00 +1: 98 : 2.062936e-01 2.733308e-01 1.647646e+01 +1: 99 : -4.569919e-01 5.473324e-01 1.227368e+01 +1: passed +1: Suite: Miscellaneous utility functions +1: Test: Median of odd length array ...passed +1: Test: Median of even length array ...passed +1: +1: Run Summary: Type Total Ran Passed Failed Inactive +1: suites 11 11 n/a 0 0 +1: tests 71 71 71 0 0 +1: asserts 506 506 506 0 n/a +1: +1: Elapsed time = 8.930 seconds +17/19 Test #1: unittest ......................... Passed 11.55 sec +7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG +7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } +7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } +7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA +18/19 Test #7: test_rawrnnrf_r94_call ........... Passed 12.17 sec 9: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa (score = -35302.484375) 9: idx signal pos base current sd dwell 9: 0 nan -1 N nan nan nan @@ -262224,10 +262492,6 @@ 9: 22961 0.971267 1825 T 0.587637 0.120716 9.286497 9: 22962 0.863348 1825 T 0.587637 0.120716 9.286497 9: 22963 0.917307 1825 T 0.587637 0.120716 9.286497 -7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } -7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA -17/19 Test #7: test_rawrnnrf_r94_call ........... Passed 16.56 sec 9: 22964 0.984757 1825 T 0.587637 0.120716 9.286497 9: 22965 0.998246 1825 T 0.587637 0.120716 9.286497 9: 22966 0.863348 1825 T 0.587637 0.120716 9.286497 @@ -272519,8 +272783,6 @@ 9: 33252 -0.930797 2599 G -0.851936 0.155392 11.500250 9: 33253 -0.917307 2599 G -0.851936 0.155392 11.500250 9: 33254 -0.984757 2599 G -0.851936 0.155392 11.500250 -1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed 9: 33255 -0.890328 2599 G -0.851936 0.155392 11.500250 9: 33256 -0.998246 2599 G -0.851936 0.155392 11.500250 9: 33257 -0.768919 2599 G -0.851936 0.155392 11.500250 @@ -303661,243 +303923,17 @@ 9: 64392 nan -1 N nan nan nan 9: 64393 nan -1 N nan nan nan 9: 64394 nan -1 N nan nan nan -18/19 Test #9: test_mappy ....................... Passed 16.73 sec -1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Suite: Functions on scrappie matrices -1: Test: Row normalisation edge case nr 8 ...passed -1: Test: Row normalisation edge case nr 9 ...passed -1: Test: Row normalisation edge case nr 10 ...passed -1: Test: Row normalisation edge case nr 11 ...passed -1: Suite: Test manipulating signal -1: Test: Normalise trimmed signal ...passed -1: Test: Trimming of raw signal ...passed -1: Suite: Test sequence-to-squiggle -1: Test: Short sequence to squiggle with network parameterisation ...# Squiggle with network parameters -1: 0 : -7.100222e-02 -1.052642e+00 1.414901e-01 -1: 1 : -7.592717e-01 -1.105536e+00 -4.640082e-01 -1: 2 : 6.517259e-01 -1.619675e+00 -1.508518e+00 -1: 3 : 7.911155e-01 -1.961320e+00 -1.867191e+00 -1: 4 : -4.636365e-02 -2.309864e+00 -2.113610e+00 -1: 5 : 3.253556e-01 -2.105663e+00 -2.100757e+00 -1: 6 : -2.154961e-01 -2.309796e+00 -2.132698e+00 -1: 7 : -3.571292e-02 -2.083405e+00 -2.042708e+00 -1: 8 : 1.599802e+00 -1.887870e+00 -2.025741e+00 -1: 9 : 8.314085e-01 -2.451915e+00 -2.454266e+00 -1: 10 : 6.323134e-01 -2.240801e+00 -2.265080e+00 -1: 11 : -6.508422e-01 -1.993278e+00 -2.375013e+00 -1: 12 : -5.089763e-01 -2.072061e+00 -2.146450e+00 -1: 13 : 8.102253e-01 -2.133760e+00 -2.323975e+00 -1: 14 : 8.833820e-02 -2.125255e+00 -2.124305e+00 -1: 15 : 1.071858e+00 -1.749681e+00 -2.241458e+00 -1: 16 : -2.662371e-01 -2.307614e+00 -2.348673e+00 -1: 17 : 2.526874e-01 -2.248703e+00 -2.320865e+00 -1: 18 : 9.335266e-01 -1.882824e+00 -2.341311e+00 -1: 19 : -3.805782e-01 -1.794182e+00 -2.349835e+00 -1: 20 : -1.473435e+00 -2.014107e+00 -2.131543e+00 -1: 21 : -1.468751e+00 -1.995398e+00 -2.432606e+00 -1: 22 : 5.183253e-01 -1.618705e+00 -2.231401e+00 -1: 23 : -1.178945e+00 -1.925591e+00 -2.094005e+00 -1: 24 : -4.925162e-01 -2.034039e+00 -2.007017e+00 -1: 25 : 7.687722e-01 -1.832321e+00 -2.014938e+00 -1: 26 : -3.909144e-01 -1.958265e+00 -1.838261e+00 -1: 27 : -9.566960e-01 -2.116315e+00 -1.882866e+00 -1: 28 : -1.504592e+00 -1.967939e+00 -1.786390e+00 -1: 29 : -1.584746e+00 -1.986520e+00 -2.088347e+00 -1: 30 : 7.169726e-01 -1.573472e+00 -1.709084e+00 -1: 31 : -5.171665e-01 -1.965511e+00 -1.954707e+00 -1: 32 : -9.571309e-01 -2.094756e+00 -1.757891e+00 -1: 33 : -1.530293e+00 -1.958263e+00 -1.948082e+00 -1: 34 : -7.154673e-01 -2.065584e+00 -2.075371e+00 -1: 35 : 1.340190e-01 -1.944091e+00 -1.914026e+00 -1: 36 : 1.544947e+00 -1.929502e+00 -2.150595e+00 -1: 37 : 7.528057e-01 -2.257131e+00 -1.926496e+00 -1: 38 : 2.406347e-01 -2.208216e+00 -2.034885e+00 -1: 39 : -5.725307e-01 -1.883131e+00 -2.108053e+00 -1: 40 : 1.791558e+00 -1.536994e+00 -2.167133e+00 -1: 41 : 1.642266e-01 -1.959490e+00 -2.100835e+00 -1: 42 : 1.738289e+00 -1.946394e+00 -2.119461e+00 -1: 43 : 9.157931e-01 -2.115188e+00 -2.043411e+00 -1: 44 : 1.088121e-01 -2.110393e+00 -2.055440e+00 -1: 45 : -2.463773e-01 -2.352781e+00 -2.026276e+00 -1: 46 : -2.968376e-01 -2.384610e+00 -1.996209e+00 -1: 47 : -2.164531e-01 -2.447103e+00 -1.998921e+00 -1: 48 : -1.930564e-01 -2.436937e+00 -2.000106e+00 -1: 49 : -1.830719e-01 -2.442657e+00 -2.056543e+00 -1: 50 : -1.657240e-01 -2.444262e+00 -2.075977e+00 -1: 51 : -1.614439e-01 -2.459783e+00 -2.059981e+00 -1: 52 : -1.486868e-01 -2.461916e+00 -2.067977e+00 -1: 53 : -1.427199e-01 -2.468782e+00 -2.054369e+00 -1: 54 : -1.372803e-01 -2.467317e+00 -2.054323e+00 -1: 55 : -1.326133e-01 -2.470593e+00 -2.053199e+00 -1: 56 : -1.302194e-01 -2.473777e+00 -2.056859e+00 -1: 57 : -1.261704e-01 -2.478879e+00 -2.061419e+00 -1: 58 : -1.243679e-01 -2.484729e+00 -2.086884e+00 -1: 59 : -1.173265e-01 -2.494588e+00 -2.133612e+00 -1: 60 : -1.214529e-01 -2.494635e+00 -2.183348e+00 -1: 61 : -1.293582e-01 -2.506257e+00 -2.171958e+00 -1: 62 : -1.191051e-01 -2.497786e+00 -2.145566e+00 -1: 63 : -1.195273e-01 -2.507583e+00 -2.283516e+00 -1: 64 : -1.336055e-01 -2.507490e+00 -2.176662e+00 -1: 65 : -1.368918e-01 -2.529756e+00 -2.196912e+00 -1: 66 : -1.233890e-01 -2.436671e+00 -1.958676e+00 -1: 67 : -1.247224e-01 -2.504339e+00 -2.117309e+00 -1: 68 : -1.032085e-01 -2.471079e+00 -2.012799e+00 -1: 69 : -2.071139e-01 -2.406339e+00 -1.964724e+00 -1: 70 : -2.314971e-01 -2.482945e+00 -2.155415e+00 -1: 71 : -2.581455e-01 -2.333455e+00 -1.886001e+00 -1: 72 : -6.401938e-01 -2.226488e+00 -2.015915e+00 -1: 73 : -7.949377e-01 -2.196288e+00 -2.162808e+00 -1: 74 : -8.079978e-01 -2.362137e+00 -2.147486e+00 -1: 75 : -1.083655e+00 -1.982127e+00 -2.269919e+00 -1: 76 : 1.037179e+00 -1.306082e+00 -2.118258e+00 -1: 77 : -8.516058e-01 -2.005135e+00 -2.194561e+00 -1: 78 : 1.016745e+00 -2.144597e+00 -1.807433e+00 -1: 79 : 7.776245e-01 -1.778889e+00 -1.912730e+00 -1: 80 : -7.908624e-01 -1.996992e+00 -2.312429e+00 -1: 81 : 1.090484e+00 -2.140350e+00 -2.126710e+00 -1: 82 : 1.015684e+00 -2.173901e+00 -2.125421e+00 -1: 83 : 1.260068e-01 -2.163344e+00 -1.811512e+00 -1: 84 : -1.337411e-01 -2.389348e+00 -1.904007e+00 -1: 85 : -3.989461e-01 -2.244048e+00 -1.749086e+00 -1: 86 : -9.542197e-01 -2.211177e+00 -1.788534e+00 -1: 87 : -9.941038e-01 -1.815204e+00 -1.902731e+00 -1: 88 : 2.104662e+00 -1.513922e+00 -2.045570e+00 -1: 89 : 9.999876e-01 -2.050895e+00 -2.244490e+00 -1: 90 : -7.696630e-02 -1.947020e+00 -2.157029e+00 -1: 91 : -9.479131e-01 -2.263503e+00 -2.090311e+00 -1: 92 : -1.952076e+00 -1.847213e+00 -2.148435e+00 -1: 93 : 1.132581e-01 -2.016356e+00 -2.078692e+00 -1: 94 : 2.403807e-01 -2.336333e+00 -2.143608e+00 -1: 95 : 1.057027e+00 -1.977065e+00 -2.303994e+00 -1: 96 : 3.843040e-01 -2.226576e+00 -2.423552e+00 -1: 97 : 7.154019e-01 -1.956273e+00 -2.181569e+00 -1: 98 : 2.062936e-01 -1.297073e+00 -2.801933e+00 -1: 99 : -4.569919e-01 -6.026990e-01 -2.507457e+00 -1: passed -1: Test: Short sequence to squiggle with transformed parameterisation ...# Squiggle with transformed parameters -1: 0 : -7.100222e-02 3.490146e-01 8.680637e-01 -1: 1 : -7.592717e-01 3.310335e-01 1.590436e+00 -1: 2 : 6.517259e-01 1.979630e-01 4.520027e+00 -1: 3 : 7.911155e-01 1.406727e-01 6.470098e+00 -1: 4 : -4.636365e-02 9.927477e-02 8.278069e+00 -1: 5 : 3.253556e-01 1.217649e-01 8.172357e+00 -1: 6 : -2.154961e-01 9.928147e-02 8.437597e+00 -1: 7 : -3.571292e-02 1.245055e-01 7.711463e+00 -1: 8 : 1.599802e+00 1.513939e-01 7.581724e+00 -1: 9 : 8.314085e-01 8.612853e-02 1.163788e+01 -1: 10 : 6.323134e-01 1.063733e-01 9.631895e+00 -1: 11 : -6.508422e-01 1.362481e-01 1.075115e+01 -1: 12 : -5.089763e-01 1.259260e-01 8.554433e+00 -1: 13 : 8.102253e-01 1.183913e-01 1.021620e+01 -1: 14 : 8.833820e-02 1.194025e-01 8.367081e+00 -1: 15 : 1.071858e+00 1.738294e-01 9.407034e+00 -1: 16 : -2.662371e-01 9.949841e-02 1.047167e+01 -1: 17 : 2.526874e-01 1.055360e-01 1.018448e+01 -1: 18 : 9.335266e-01 1.521598e-01 1.039486e+01 -1: 19 : -3.805782e-01 1.662634e-01 1.048384e+01 -1: 20 : -1.473435e+00 1.334395e-01 8.427864e+00 -1: 21 : -1.468751e+00 1.359596e-01 1.138852e+01 -1: 22 : 5.183253e-01 1.981551e-01 9.312908e+00 -1: 23 : -1.178945e+00 1.457896e-01 8.117357e+00 -1: 24 : -4.925162e-01 1.308061e-01 7.441085e+00 -1: 25 : 7.687722e-01 1.600417e-01 7.500263e+00 -1: 26 : -3.909144e-01 1.411030e-01 6.285598e+00 -1: 27 : -9.566960e-01 1.204748e-01 6.572314e+00 -1: 28 : -1.504592e+00 1.397446e-01 5.967870e+00 -1: 29 : -1.584746e+00 1.371720e-01 8.071564e+00 -1: 30 : 7.169726e-01 2.073242e-01 5.523900e+00 -1: 31 : -5.171665e-01 1.400842e-01 7.061852e+00 -1: 32 : -9.571309e-01 1.231003e-01 5.800190e+00 -1: 33 : -1.530293e+00 1.411033e-01 7.015221e+00 -1: 34 : -7.154673e-01 1.267443e-01 7.967502e+00 -1: 35 : 1.340190e-01 1.431173e-01 6.780335e+00 -1: 36 : 1.544947e+00 1.452205e-01 8.589970e+00 -1: 37 : 7.528057e-01 1.046503e-01 6.865414e+00 -1: 38 : 2.406347e-01 1.098965e-01 7.651375e+00 -1: 39 : -5.725307e-01 1.521131e-01 8.232198e+00 -1: 40 : 1.791558e+00 2.150264e-01 8.733207e+00 -1: 41 : 1.642266e-01 1.409303e-01 8.172995e+00 -1: 42 : 1.738289e+00 1.427880e-01 8.326647e+00 -1: 43 : 9.157931e-01 1.206106e-01 7.716887e+00 -1: 44 : 1.088121e-01 1.211904e-01 7.810273e+00 -1: 45 : -2.463773e-01 9.510433e-02 7.585787e+00 -1: 46 : -2.968376e-01 9.212491e-02 7.361097e+00 -1: 47 : -2.164531e-01 8.654394e-02 7.381091e+00 -1: 48 : -1.930564e-01 8.742826e-02 7.389842e+00 -1: 49 : -1.830719e-01 8.692955e-02 7.818890e+00 -1: 50 : -1.657240e-01 8.679014e-02 7.972329e+00 -1: 51 : -1.614439e-01 8.545349e-02 7.845820e+00 -1: 52 : -1.486868e-01 8.527137e-02 7.908805e+00 -1: 53 : -1.427199e-01 8.468797e-02 7.801917e+00 -1: 54 : -1.372803e-01 8.481213e-02 7.801556e+00 -1: 55 : -1.326133e-01 8.453473e-02 7.792791e+00 -1: 56 : -1.302194e-01 8.426598e-02 7.821364e+00 -1: 57 : -1.261704e-01 8.383711e-02 7.857110e+00 -1: 58 : -1.243679e-01 8.334816e-02 8.059758e+00 -1: 59 : -1.173265e-01 8.253042e-02 8.445313e+00 -1: 60 : -1.214529e-01 8.252656e-02 8.875977e+00 -1: 61 : -1.293582e-01 8.157299e-02 8.775450e+00 -1: 62 : -1.191051e-01 8.226693e-02 8.546880e+00 -1: 63 : -1.195273e-01 8.146491e-02 9.811115e+00 -1: 64 : -1.336055e-01 8.147245e-02 8.816829e+00 -1: 65 : -1.368918e-01 7.967844e-02 8.997186e+00 -1: 66 : -1.233890e-01 8.745151e-02 7.089930e+00 -1: 67 : -1.247224e-01 8.172958e-02 8.308747e+00 -1: 68 : -1.032085e-01 8.449367e-02 7.484239e+00 -1: 69 : -2.071139e-01 9.014467e-02 7.132941e+00 -1: 70 : -2.314971e-01 8.349697e-02 8.631474e+00 -1: 71 : -2.581455e-01 9.696014e-02 6.592949e+00 -1: 72 : -6.401938e-01 1.079067e-01 7.507593e+00 -1: 73 : -7.949377e-01 1.112152e-01 8.695518e+00 -1: 74 : -8.079978e-01 9.421863e-02 8.563301e+00 -1: 75 : -1.083655e+00 1.377758e-01 9.678620e+00 -1: 76 : 1.037179e+00 2.708792e-01 8.316633e+00 -1: 77 : -8.516058e-01 1.346421e-01 8.976064e+00 -1: 78 : 1.016745e+00 1.171152e-01 6.094779e+00 -1: 79 : 7.776245e-01 1.688257e-01 6.771546e+00 -1: 80 : -7.908624e-01 1.357430e-01 1.009893e+01 -1: 81 : 1.090484e+00 1.176136e-01 8.387229e+00 -1: 82 : 1.015684e+00 1.137331e-01 8.376424e+00 -1: 83 : 1.260068e-01 1.149402e-01 6.119696e+00 -1: 84 : -1.337411e-01 9.168947e-02 6.712739e+00 -1: 85 : -3.989461e-01 1.060285e-01 5.749343e+00 -1: 86 : -9.542197e-01 1.095716e-01 5.980679e+00 -1: 87 : -9.941038e-01 1.628047e-01 6.704179e+00 -1: 88 : 2.104662e+00 2.200452e-01 7.733565e+00 -1: 89 : 9.999876e-01 1.286197e-01 9.435606e+00 -1: 90 : -7.696630e-02 1.426987e-01 8.645411e+00 -1: 91 : -9.479131e-01 1.039856e-01 8.087430e+00 -1: 92 : -1.952076e+00 1.576759e-01 8.571430e+00 -1: 93 : 1.132581e-01 1.331397e-01 7.994008e+00 -1: 94 : 2.403807e-01 9.668154e-02 8.530156e+00 -1: 95 : 1.057027e+00 1.384751e-01 1.001410e+01 -1: 96 : 3.843040e-01 1.078972e-01 1.128587e+01 -1: 97 : 7.154019e-01 1.413844e-01 8.860198e+00 -1: 98 : 2.062936e-01 2.733308e-01 1.647646e+01 -1: 99 : -4.569919e-01 5.473324e-01 1.227368e+01 -1: passed -1: Suite: Miscellaneous utility functions -1: Test: Median of odd length array ...passed -1: Test: Median of even length array ...passed -1: -1: Run Summary: Type Total Ran Passed Failed Inactive -1: suites 11 11 n/a 0 0 -1: tests 71 71 71 0 0 -1: asserts 506 506 506 0 n/a -1: -1: Elapsed time = 11.115 seconds -19/19 Test #1: unittest ......................... Passed 17.19 sec +19/19 Test #9: test_mappy ....................... Passed 13.33 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 17.19 sec +Total Test time (real) = 13.47 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse4.1' - rm -fr -- /tmp/dh-xdg-rundir-5zh6R5jg - cd build_ssse3 && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + rm -fr -- /tmp/dh-xdg-rundir-LNrcfLIj + cd build_ssse3 && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_ssse3/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_ssse3/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_ssse3 @@ -304057,6 +304093,108 @@ 1: Test: Simple convolution, antisymmetric filter length 3 ...passed 1: Test: Scrappie convolution, antisymmetric filter length 3 ...passed 1: Suite: Test decoding +16: Usage: event_table [OPTION...] fast5 [fast5 ...] +16: Scrappie basecaller -- basecall via events +16: +16: --licence, --license Print licensing information +16: -o, --output=filename Write to file rather than stdout +16: --segmentation=chunk:percentile +16: Chunk size and percentile for variance based +16: segmentation +16: -t, --trim=start:end Number of events to trim, as start:end +16: -?, --help Give this help list +16: --usage Give a short usage message +16: -V, --version Print program version +16: +16: Mandatory or optional arguments to long options are also mandatory or optional +16: for any corresponding short options. +16: +16: Report bugs to . + 1/19 Test #16: test_help_event_table ............ Passed 0.14 sec +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. + 2/19 Test #13: test_licence ..................... Passed 0.24 sec +15: Usage: events [OPTION...] fast5 [fast5 ...] +15: Scrappie basecaller -- basecall via events +15: +15: -#, --threads=nparallel Number of reads to call in parallel +15: --dump=filename Dump annotated events to HDF5 file +15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths +15: -f, --format=format Format to output reads (FASTA or SAM) +15: --hdf5-chunk=size Chunk size for HDF5 output +15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +15: 1: quickest, 9: best) +15: --licence, --license Print licensing information +15: --local=penalty Penalty for local basecalling +15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +15: -m, --min_prob=probability Minimum bound on probability of match +15: -o, --output=filename Write to file rather than stdout +15: -p, --prefix=string Prefix to append to name of each read +15: --segmentation=chunk:percentile +15: Chunk size and percentile for variance based +15: segmentation +15: --slip, --no-slip Use slipping +15: -s, --skip=penalty Penalty for skipping a base +15: --temperature1=factor Temperature for softmax weights +15: --temperature2=factor Temperature for softmax bias +15: -t, --trim=start:end Number of events to trim, as start:end +15: --uuid, --no-uuid Output UUID +15: -y, --stay=penalty Penalty for staying +15: -?, --help Give this help list +15: --usage Give a short usage message +15: -V, --version Print program version +15: +15: Mandatory or optional arguments to long options are also mandatory or optional +15: for any corresponding short options. +15: +15: Report bugs to . +17: Usage: raw [OPTION...] fast5 [fast5 ...] +17: Scrappie basecaller -- basecall from raw signal +17: +17: -#, --threads=nparallel Number of reads to call in parallel +17: -f, --format=format Format to output reads (FASTA or SAM) +17: --hdf5-chunk=size Chunk size for HDF5 output +17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +17: 1: quickest, 9: best) +17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from +17: "nochange" or "mean" (default). Not implemented +17: for CRF. +17: --licence, --license Print licensing information +17: --local=penalty Penalty for local basecalling +17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", +17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" +17: -m, --min_prob=probability Minimum bound on probability of match +17: -o, --output=filename Write to file rather than stdout +17: -p, --prefix=string Prefix to append to name of each read +17: --segmentation=chunk:percentile +17: Chunk size and percentile for variance based +17: segmentation +17: --slip, --no-slip Use slipping +17: -s, --skip=penalty Penalty for skipping a base +17: --temperature1=factor Temperature for softmax weights +17: --temperature2=factor Temperature for softmax bias +17: -t, --trim=start:end Number of samples to trim, as start:end +17: --uuid, --no-uuid Output UUID +17: -y, --stay=penalty Penalty for staying +17: -?, --help Give this help list +17: --usage Give a short usage message +17: -V, --version Print program version +17: +17: Mandatory or optional arguments to long options are also mandatory or optional +17: for any corresponding short options. +17: +17: Report bugs to . + 3/19 Test #15: test_help_events ................. Passed 0.23 sec 18: Usage: squiggle [OPTION...] fasta [fasta ...] 18: Scrappie squiggler 18: @@ -304075,7 +304213,8 @@ 18: for any corresponding short options. 18: 18: Report bugs to . - 1/19 Test #18: test_help_squiggle ............... Passed 0.11 sec + 4/19 Test #17: test_help_raw .................... Passed 0.21 sec +19: scrappie 1.4.0- 8: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 8: #event start mean stdv dwell 8: 0 0 74.501198 0.733543 4 @@ -316475,17 +316614,9 @@ 8: 12394 64075 54.637299 0.944376 3 8: 12395 64078 52.637016 1.520129 5 8: 12396 64083 61.066772 1.247263 7 -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. + 5/19 Test #18: test_help_squiggle ............... Passed 0.56 sec + 6/19 Test #19: test_version ..................... Passed 0.55 sec + 7/19 Test #8: test_event_table ................. Passed 0.66 sec 14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies 14: Limited Research Algorithms group. 14: @@ -316510,103 +316641,7 @@ 14: such, may change drastically between releases and breaks backwards 14: compatibility. Newer versions may drop support of current features or change their 14: behaviour. -16: Usage: event_table [OPTION...] fast5 [fast5 ...] -16: Scrappie basecaller -- basecall via events -16: -16: --licence, --license Print licensing information -16: -o, --output=filename Write to file rather than stdout -16: --segmentation=chunk:percentile -16: Chunk size and percentile for variance based -16: segmentation -16: -t, --trim=start:end Number of events to trim, as start:end -16: -?, --help Give this help list -16: --usage Give a short usage message -16: -V, --version Print program version -16: -16: Mandatory or optional arguments to long options are also mandatory or optional -16: for any corresponding short options. -16: -16: Report bugs to . -15: Usage: events [OPTION...] fast5 [fast5 ...] -15: Scrappie basecaller -- basecall via events -15: -15: -#, --threads=nparallel Number of reads to call in parallel -15: --dump=filename Dump annotated events to HDF5 file -15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths -15: -f, --format=format Format to output reads (FASTA or SAM) -15: --hdf5-chunk=size Chunk size for HDF5 output -15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -15: 1: quickest, 9: best) -15: --licence, --license Print licensing information -15: --local=penalty Penalty for local basecalling -15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -15: -m, --min_prob=probability Minimum bound on probability of match -15: -o, --output=filename Write to file rather than stdout -15: -p, --prefix=string Prefix to append to name of each read -15: --segmentation=chunk:percentile -15: Chunk size and percentile for variance based -15: segmentation -15: --slip, --no-slip Use slipping -15: -s, --skip=penalty Penalty for skipping a base -15: --temperature1=factor Temperature for softmax weights -15: --temperature2=factor Temperature for softmax bias -15: -t, --trim=start:end Number of events to trim, as start:end -15: --uuid, --no-uuid Output UUID -15: -y, --stay=penalty Penalty for staying -15: -?, --help Give this help list -15: --usage Give a short usage message -15: -V, --version Print program version -15: -15: Mandatory or optional arguments to long options are also mandatory or optional -15: for any corresponding short options. -15: -15: Report bugs to . -17: Usage: raw [OPTION...] fast5 [fast5 ...] -17: Scrappie basecaller -- basecall from raw signal -17: -17: -#, --threads=nparallel Number of reads to call in parallel -17: -f, --format=format Format to output reads (FASTA or SAM) -17: --hdf5-chunk=size Chunk size for HDF5 output -17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -17: 1: quickest, 9: best) -17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from -17: "nochange" or "mean" (default). Not implemented -17: for CRF. -17: --licence, --license Print licensing information -17: --local=penalty Penalty for local basecalling -17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", -17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" -17: -m, --min_prob=probability Minimum bound on probability of match -17: -o, --output=filename Write to file rather than stdout -17: -p, --prefix=string Prefix to append to name of each read -17: --segmentation=chunk:percentile -17: Chunk size and percentile for variance based -17: segmentation -17: --slip, --no-slip Use slipping -17: -s, --skip=penalty Penalty for skipping a base -17: --temperature1=factor Temperature for softmax weights -17: --temperature2=factor Temperature for softmax bias -17: -t, --trim=start:end Number of samples to trim, as start:end -17: --uuid, --no-uuid Output UUID -17: -y, --stay=penalty Penalty for staying -17: -?, --help Give this help list -17: --usage Give a short usage message -17: -V, --version Print program version -17: -17: Mandatory or optional arguments to long options are also mandatory or optional -17: for any corresponding short options. -17: -17: Report bugs to . -19: scrappie 1.4.0- - 2/19 Test #8: test_event_table ................. Passed 0.45 sec - 3/19 Test #13: test_licence ..................... Passed 0.42 sec - 4/19 Test #14: test_help ........................ Passed 0.41 sec - 5/19 Test #15: test_help_events ................. Passed 0.40 sec - 6/19 Test #16: test_help_event_table ............ Passed 0.40 sec - 7/19 Test #17: test_help_raw .................... Passed 0.40 sec - 8/19 Test #19: test_version ..................... Passed 0.37 sec -1: Test: Decoding same as Sloika ...passed + 8/19 Test #14: test_help ........................ Passed 0.63 sec 12: #one 12: pos base current sd dwell 12: 0 T 0.273674 0.499834 0.755774 @@ -319135,6 +319170,2619 @@ 12: 2523 T -0.083219 0.260580 7.076825 12: 2524 A -1.159863 0.143544 8.895527 12: 2525 T -0.833608 0.215293 6.887583 +12: 2526 T 1.226972 0.187758 8.868389 +12: 2527 A 0.326663 0.163646 8.637415 +12: 2528 A 0.776825 0.159115 7.422452 +12: 2529 A -0.622245 0.205832 7.580650 +12: 2530 T -1.265517 0.217479 8.306485 +12: 2531 A 0.628805 0.121661 8.164207 +12: 2532 T 0.769511 0.098043 8.199687 +12: 2533 A 0.350800 0.127996 8.210618 +12: 2534 A -0.141438 0.109709 8.702918 +12: 2535 T 0.242651 0.102963 8.906513 +12: 2536 T 0.491109 0.120859 8.978339 +12: 2537 C -0.153347 0.134612 9.338113 +12: 2538 C 1.066516 0.127692 8.513339 +12: 2539 T 0.594936 0.148811 7.963649 +12: 2540 T -0.379407 0.161337 6.392164 +12: 2541 A -0.659223 0.108110 7.778077 +12: 2542 T -0.576142 0.108834 6.999051 +12: 2543 C -0.843715 0.130818 6.598724 +12: 2544 A -1.437682 0.135279 7.597930 +12: 2545 A -1.514829 0.124043 8.375982 +12: 2546 G -1.103884 0.122612 7.674520 +12: 2547 G -0.764696 0.161371 7.748152 +12: 2548 G 0.175790 0.134796 8.036445 +12: 2549 A -0.004486 0.092964 7.420146 +12: 2550 A -0.341161 0.127355 7.378166 +12: 2551 A -0.928757 0.137549 7.299687 +12: 2552 C -1.420619 0.184846 7.187764 +12: 2553 T 0.516770 0.172238 7.991004 +12: 2554 T 1.209236 0.132782 8.721268 +12: 2555 C 1.472676 0.122889 8.505735 +12: 2556 A 1.316731 0.137611 7.890669 +12: 2557 T -0.069831 0.213390 6.807758 +12: 2558 T -0.617375 0.194515 7.804194 +12: 2559 T 1.544968 0.190930 7.108366 +12: 2560 T 0.668908 0.243240 7.406156 +12: 2561 A -0.883512 0.149727 8.009659 +12: 2562 A -1.634685 0.122577 8.049137 +12: 2563 T -1.398357 0.110037 8.988862 +12: 2564 A -0.786857 0.100302 8.384510 +12: 2565 G -0.620314 0.109937 8.754931 +12: 2566 A -1.176952 0.137542 8.881434 +12: 2567 A -0.128371 0.133560 8.570903 +12: 2568 A -0.713346 0.138379 8.649867 +12: 2569 G 0.599217 0.158987 8.227661 +12: 2570 G -0.482809 0.249785 7.666263 +12: 2571 T -1.283436 0.205650 10.129151 +12: 2572 A 0.217471 0.195993 10.924161 +12: 2573 T -0.527437 0.183608 10.333318 +12: 2574 G 0.289440 0.216070 11.379429 +12: 2575 A -0.470523 0.228475 10.162048 +12: 2576 C -1.309896 0.346120 11.664120 +12: 2577 A 0.710910 0.445684 9.001451 +12: 2578 C -0.044387 0.550503 7.497941 +12: #two +12: pos base current sd dwell +12: 0 C 0.683936 0.292595 0.787175 +12: 1 T 0.285399 0.223970 1.363220 +12: 2 T 0.233159 0.229233 1.925318 +12: 3 T -0.284285 0.202461 3.632945 +12: 4 T 1.513357 0.179336 6.751537 +12: 5 C 0.495119 0.192543 6.420651 +12: 6 C 0.220424 0.123044 7.956814 +12: 7 A -0.270081 0.148077 7.616370 +12: 8 T 0.737105 0.154406 7.992534 +12: 9 G -0.257618 0.139907 7.938873 +12: 10 C 0.238270 0.144361 7.577223 +12: 11 A -0.565925 0.132718 7.805387 +12: 12 C 0.186974 0.157118 8.225278 +12: 13 A -0.566944 0.119921 8.531586 +12: 14 C -0.681718 0.155401 7.449421 +12: 15 A 1.114625 0.177478 8.406658 +12: 16 C 0.209275 0.178806 8.876794 +12: 17 A 0.182029 0.144124 7.857810 +12: 18 G -0.634468 0.142029 7.148503 +12: 19 T -0.808495 0.109849 7.214585 +12: 20 G -0.660106 0.130614 7.163760 +12: 21 C 0.377924 0.144487 6.444206 +12: 22 A 1.238849 0.168886 6.598902 +12: 23 A 0.372003 0.187160 7.691326 +12: 24 G 0.590835 0.115245 7.357205 +12: 25 C 0.507378 0.121377 7.407406 +12: 26 T -0.341736 0.206346 8.269124 +12: 27 G -1.183804 0.146394 8.195521 +12: 28 T -0.588579 0.236768 7.109519 +12: 29 T 1.548155 0.187290 8.619592 +12: 30 G 0.935080 0.159360 7.153718 +12: 31 A 0.080601 0.119322 8.334003 +12: 32 A 0.135833 0.144603 8.254804 +12: 33 T -0.689822 0.163885 7.153272 +12: 34 C -0.442044 0.116712 9.222482 +12: 35 C 0.006143 0.122890 7.686490 +12: 36 T -0.439292 0.176346 7.135783 +12: 37 G 1.580827 0.138243 8.895194 +12: 38 C 1.068271 0.129942 8.509816 +12: 39 C 0.509839 0.125859 8.376747 +12: 40 A 1.481592 0.150149 8.551979 +12: 41 T 0.501036 0.222623 8.407757 +12: 42 T -0.670658 0.131562 10.968962 +12: 43 C -0.698923 0.113698 9.856374 +12: 44 T -0.555862 0.113812 8.696571 +12: 45 G -0.455272 0.135835 8.416758 +12: 46 G 1.250371 0.149751 9.457069 +12: 47 G 0.623332 0.145319 8.499714 +12: 48 G 0.695963 0.143216 7.960942 +12: 49 G -0.249940 0.243618 7.950039 +12: 50 T -1.661689 0.142153 9.528579 +12: 51 C -1.203690 0.122606 8.463405 +12: 52 T -0.716455 0.128440 7.035435 +12: 53 G -0.759977 0.142399 8.437973 +12: 54 G -0.802840 0.157061 7.802762 +12: 55 A 0.680831 0.159626 7.500440 +12: 56 G -0.134592 0.260248 6.134130 +12: 57 G -1.229793 0.165220 8.214905 +12: 58 A 0.003239 0.172415 7.446199 +12: 59 T -0.742153 0.157955 7.368556 +12: 60 G -1.060039 0.135540 8.245991 +12: 61 G 0.171675 0.129316 7.841066 +12: 62 T 0.125342 0.112360 6.897592 +12: 63 G 0.160828 0.112461 7.940848 +12: 64 G 0.412585 0.131637 7.555494 +12: 65 C -0.240946 0.148206 7.376078 +12: 66 C 0.201810 0.116791 8.685833 +12: 67 C 0.887716 0.145968 7.398972 +12: 68 T 0.499432 0.140390 7.761889 +12: 69 C 1.649669 0.170317 7.459800 +12: 70 T 0.892544 0.179992 6.799202 +12: 71 T -0.048452 0.168846 7.006836 +12: 72 C 0.843768 0.133001 8.420102 +12: 73 T 1.146918 0.126127 7.266869 +12: 74 C 1.701908 0.162262 7.973849 +12: 75 A 0.722689 0.272392 6.926387 +12: 76 C -0.422857 0.177529 7.769481 +12: 77 T 0.652839 0.153194 8.006291 +12: 78 T 1.652439 0.156209 8.763206 +12: 79 A 1.067100 0.143712 8.682311 +12: 80 G 0.313558 0.129372 8.313437 +12: 81 C -0.186521 0.119165 7.979121 +12: 82 T -0.849993 0.130804 8.510041 +12: 83 C 0.230951 0.135218 7.679952 +12: 84 C 1.145062 0.130036 7.886291 +12: 85 C 0.615303 0.202166 7.516761 +12: 86 A -0.296616 0.127621 8.316122 +12: 87 C -0.800418 0.133430 7.996579 +12: 88 T 0.446001 0.134251 7.482554 +12: 89 A -0.082318 0.126296 7.080921 +12: 90 G -0.367767 0.136267 8.172821 +12: 91 G 0.886769 0.159156 8.788610 +12: 92 C -0.150809 0.152867 8.720862 +12: 93 A -0.026322 0.113684 9.718911 +12: 94 G 0.280566 0.112469 8.491561 +12: 95 T 0.405291 0.110869 7.902351 +12: 96 G 0.088007 0.145531 8.018662 +12: 97 C -1.115384 0.145017 7.901880 +12: 98 C -1.248004 0.130099 8.557863 +12: 99 C -1.012972 0.144737 8.563062 +12: 100 C -0.469617 0.135931 8.055082 +12: 101 G -0.165069 0.160724 6.519965 +12: 102 A 1.740094 0.193153 9.840417 +12: 103 G 0.669955 0.314922 7.620682 +12: 104 A -1.132121 0.152171 7.919706 +12: 105 G -1.596206 0.131494 7.824341 +12: 106 T -1.737968 0.128396 8.849431 +12: 107 G -1.074737 0.193561 8.028422 +12: 108 G 0.545084 0.174554 7.266385 +12: 109 G 1.201747 0.171350 8.240015 +12: 110 G -0.048935 0.201652 8.525520 +12: 111 A -0.315501 0.132319 7.861927 +12: 112 C -0.784466 0.171062 7.665784 +12: 113 T -0.867454 0.118625 8.792853 +12: 114 G -0.523957 0.129469 7.963081 +12: 115 T -0.495066 0.133924 7.746632 +12: 116 A -0.511067 0.146957 7.315947 +12: 117 G -0.800620 0.146595 8.104681 +12: 118 G 0.817982 0.162913 8.418139 +12: 119 G 0.307257 0.135951 8.070265 +12: 120 G -0.183235 0.158126 7.720549 +12: 121 G -1.247885 0.154236 7.212156 +12: 122 T -1.235173 0.192299 7.176175 +12: 123 C 0.227138 0.153021 7.120850 +12: 124 C 0.269620 0.102267 6.807935 +12: 125 A 0.496941 0.124780 7.077841 +12: 126 A 0.067668 0.141326 7.269386 +12: 127 C -0.848179 0.147831 7.672505 +12: 128 C -0.099992 0.138489 8.403705 +12: 129 C -0.573005 0.185177 7.342544 +12: 130 C 1.420827 0.147371 9.100210 +12: 131 A 1.394561 0.127978 8.176846 +12: 132 C 0.747967 0.120094 7.880960 +12: 133 A 0.556398 0.106186 7.639646 +12: 134 T 0.339996 0.109876 7.777754 +12: 135 T 0.192567 0.125309 8.691854 +12: 136 C 0.864985 0.115457 8.927729 +12: 137 C 0.940769 0.107040 8.939465 +12: 138 C 0.595673 0.112515 8.679834 +12: 139 C 1.702741 0.159156 8.273429 +12: 140 T 0.679688 0.235308 7.137774 +12: 141 T 1.500333 0.155901 8.074887 +12: 142 C 0.563948 0.144589 6.819886 +12: 143 T 0.819429 0.128449 8.867145 +12: 144 G 1.880705 0.162024 10.403257 +12: 145 T 0.907289 0.236456 8.116607 +12: 146 A 0.276857 0.122380 11.574350 +12: 147 C -0.003125 0.098151 10.075993 +12: 148 T 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+12: 385 A -1.298883 0.153235 9.279499 +12: 386 A 0.049566 0.151172 8.776335 +12: 387 T -0.476972 0.178650 8.305429 +12: 388 A 0.706105 0.154322 8.859285 +12: 389 A -0.412539 0.276034 7.834244 +12: 390 T -1.479988 0.135568 8.491319 +12: 391 G -0.984458 0.113894 7.529229 +12: 392 T -0.595327 0.169850 6.549099 +12: 393 G 1.178384 0.172173 8.295771 +12: 394 A 0.226711 0.187446 6.952718 +12: 395 A -0.206524 0.119915 6.764997 +12: 396 G 0.024989 0.107858 7.001903 +12: 397 T 0.140670 0.103885 7.641203 +12: 398 A 0.354666 0.122763 6.627659 +12: 399 C -0.083291 0.105323 7.601828 +12: 400 T 0.700617 0.110706 8.803763 +12: 401 T 0.670911 0.116878 7.020290 +12: 402 T 0.490982 0.113066 7.510382 +12: 403 C 0.420451 0.131765 7.362690 +12: 404 T -0.292898 0.130447 7.734083 +12: 405 C 0.683440 0.125931 8.629559 +12: 406 C 0.369405 0.109370 9.841402 +12: 407 C 1.308351 0.121676 10.381233 +12: 408 A 1.320790 0.137453 9.842503 +12: 409 C -0.103132 0.197003 8.120085 +12: 410 C -0.785058 0.168256 9.782931 +12: 411 T 1.569775 0.166022 9.234636 +12: 412 T 1.036599 0.180198 7.932461 +12: 413 A -0.640882 0.159954 8.497828 +12: 414 A -0.944006 0.143679 10.795215 +12: 415 T 0.793820 0.147887 10.082943 +12: 416 C -0.109783 0.203165 8.242704 +12: 417 A -1.343224 0.131880 9.678277 +12: 418 A -1.117976 0.183367 8.125211 +12: 419 T 0.995572 0.145148 8.426018 +12: 420 G 1.364057 0.130762 9.455942 +12: 421 G 0.408256 0.165695 8.511464 +12: 422 A 0.264011 0.130445 8.787150 +12: 423 T -0.601658 0.168324 7.666548 +12: 424 T -1.038395 0.117141 8.439112 +12: 425 G -0.930588 0.160419 7.476322 +12: 426 T 1.293789 0.203722 8.011958 +12: 427 G 0.361234 0.169292 8.223000 +12: 428 G 0.904501 0.144563 8.813653 +12: 429 G -0.053941 0.265260 6.902291 +12: 430 T -1.072022 0.131679 9.296647 +12: 431 G -0.721858 0.167685 7.238221 +12: 432 T 0.700117 0.147894 7.224444 +12: 433 A 0.878395 0.119443 7.402660 +12: 434 A 0.752857 0.118299 7.112970 +12: 435 G 0.594386 0.101310 8.029117 +12: 436 T 0.444591 0.121344 8.064740 +12: 437 T 0.069263 0.135021 8.117558 +12: 438 T -0.535323 0.173977 7.854281 +12: 439 T 1.248208 0.150752 7.654709 +12: 440 T 1.188316 0.112253 7.548024 +12: 441 C 1.344122 0.113222 7.416975 +12: 442 A 1.287401 0.123491 8.400840 +12: 443 T 0.576626 0.200823 7.119652 +12: 444 T 0.561062 0.139755 7.594437 +12: 445 T 1.517971 0.154650 7.861014 +12: 446 T 0.651657 0.185811 7.908769 +12: 447 G 1.271467 0.140728 8.857353 +12: 448 C 0.181373 0.190058 7.038936 +12: 449 T 0.926244 0.119881 8.456121 +12: 450 G 1.385401 0.106734 8.794232 +12: 451 T 1.222601 0.121687 9.492675 +12: 452 A -0.170755 0.225273 8.570241 +12: 453 T -1.195312 0.203236 9.337180 +12: 454 T 1.040732 0.151611 9.900916 +12: 455 T 0.523001 0.177506 8.351674 +12: 456 G -0.262146 0.138367 8.050104 +12: 457 A -0.916143 0.142198 6.850111 +12: 458 T 0.438547 0.147098 6.699794 +12: 459 A -0.424029 0.196412 7.900400 +12: 460 G -1.172369 0.121921 9.409793 +12: 461 G -1.363452 0.130890 8.034301 +12: 462 T -1.421804 0.121954 9.255264 +12: 463 G -0.877188 0.168585 7.760149 +12: 464 A 0.739372 0.132368 8.830921 +12: 465 G 0.632514 0.132988 7.377956 +12: 466 A -0.681140 0.202779 7.518145 +12: 467 A -1.521726 0.182475 8.066396 +12: 468 T -0.064999 0.175942 7.207297 +12: 469 T -0.467786 0.172977 7.514496 +12: 470 A 1.183469 0.138487 8.091288 +12: 471 G 0.949810 0.114140 7.733675 +12: 472 T 0.677114 0.111807 7.491447 +12: 473 A 0.719621 0.129696 7.830742 +12: 474 T -0.462589 0.188954 7.587894 +12: 475 T -0.779383 0.208614 8.569980 +12: 476 T 1.423129 0.202553 8.558455 +12: 477 T 0.449174 0.169092 7.618820 +12: 478 A 1.407107 0.161268 7.671338 +12: 479 A -0.048581 0.260698 7.591854 +12: 480 T -1.019446 0.217282 8.423330 +12: 481 A 0.640598 0.121730 7.466873 +12: 482 T 0.659680 0.096459 7.714059 +12: 483 A 0.863043 0.095863 8.707808 +12: 484 A 0.761777 0.113956 8.273762 +12: 485 T -0.283645 0.171214 8.206913 +12: 486 T -1.054696 0.167054 9.083937 +12: 487 T 0.914311 0.131684 8.106076 +12: 488 T 1.342217 0.100226 9.313575 +12: 489 G 1.497748 0.100478 8.968838 +12: 490 G 1.159638 0.109467 8.854682 +12: 491 T 0.106666 0.186589 6.419229 +12: 492 T -0.146735 0.120878 8.541133 +12: 493 T -0.642151 0.159332 6.893053 +12: 494 T 1.231249 0.136874 7.761112 +12: 495 G 1.130803 0.097186 8.006692 +12: 496 C 0.911310 0.131973 7.256328 +12: 497 A 0.240477 0.130221 7.663679 +12: 498 T 0.751821 0.116618 8.945944 +12: 499 T 0.908623 0.110116 8.554249 +12: 500 T 0.971541 0.120305 7.428917 +12: 501 C 1.376289 0.130698 7.464680 +12: 502 T 0.363642 0.181070 7.308705 +12: 503 T 1.696882 0.178590 7.912377 +12: 504 T 1.123517 0.210208 7.287202 +12: 505 T -0.110567 0.172393 6.809103 +12: 506 A -0.586681 0.146986 7.173319 +12: 507 T 0.826468 0.167812 7.229192 +12: 508 C -0.209613 0.258333 7.216827 +12: 509 A -1.131958 0.142782 7.630877 +12: 510 G -0.552229 0.178150 6.592506 +12: 511 T 0.638097 0.126035 7.576681 +12: 512 A 0.854581 0.135972 7.664192 +12: 513 A 0.149432 0.179197 7.283314 +12: 514 A -1.242458 0.132235 7.528994 +12: 515 C -1.237455 0.183105 6.691067 +12: 516 T 0.731905 0.171126 7.682553 +12: 517 C 0.023550 0.148007 7.554882 +12: 518 A 1.163244 0.111138 6.605888 +12: 519 G 1.239100 0.106454 6.795401 +12: 520 T 0.995240 0.109737 6.556725 +12: 521 G 0.844344 0.089794 8.284170 +12: 522 T 0.764161 0.114099 9.137640 +12: 523 T 0.232998 0.122537 8.551678 +12: 524 T -0.588798 0.150946 8.309076 +12: 525 T 1.444166 0.173397 8.853268 +12: 526 T 0.578644 0.239713 7.568240 +12: 527 C -0.527166 0.161663 7.841719 +12: 528 A 1.061440 0.173220 7.901905 +12: 529 T 0.095127 0.262007 7.862600 +12: 530 A -0.945922 0.150171 8.686752 +12: 531 G -1.113766 0.128757 7.584949 +12: 532 T -0.789915 0.162585 8.022680 +12: 533 A 0.966417 0.176523 9.496220 +12: 534 A 0.295306 0.187434 7.102883 +12: 535 A -1.012694 0.139956 7.981716 +12: 536 A -1.371397 0.159086 8.241878 +12: 537 T -0.006256 0.145473 7.825806 +12: 538 C 0.775771 0.130410 9.180575 +12: 539 A 0.271407 0.201722 7.723079 +12: 540 G -0.619515 0.173335 8.196575 +12: 541 T 1.008641 0.158725 7.926038 +12: 542 T -0.222349 0.206860 7.410924 +12: 543 G -0.886582 0.185500 8.536436 +12: 544 G 0.931913 0.132898 7.527556 +12: 545 T 0.748103 0.090976 6.732860 +12: 546 G 0.858973 0.115286 7.891891 +12: 547 A -0.078024 0.246420 6.944346 +12: 548 T -1.365582 0.196842 8.158941 +12: 549 T 0.540385 0.157938 8.014486 +12: 550 T 0.083148 0.153284 8.373702 +12: 551 G -0.435882 0.129398 8.544078 +12: 552 G 0.460677 0.165597 6.994655 +12: 553 T -0.608372 0.171234 6.682307 +12: 554 A 0.659926 0.131934 7.464494 +12: 555 G 0.484528 0.106696 7.403248 +12: 556 C 0.496617 0.121788 8.396399 +12: 557 A -0.369880 0.157002 8.806280 +12: 558 T 0.858043 0.124785 8.962872 +12: 559 T 1.099324 0.131605 7.321887 +12: 560 T 0.519422 0.131022 7.766441 +12: 561 A 1.283720 0.126130 7.942295 +12: 562 T 0.950935 0.145772 7.509161 +12: 563 T 0.235258 0.173058 7.579078 +12: 564 C -0.848679 0.139841 7.730261 +12: 565 T -0.773136 0.227628 7.170025 +12: 566 T 1.592361 0.185059 6.839954 +12: 567 C 1.657763 0.126888 8.221360 +12: 568 A 0.669823 0.203249 6.748996 +12: 569 A 0.974370 0.118116 7.143925 +12: 570 T 0.691344 0.102789 7.428335 +12: 571 T 0.725307 0.110262 7.434949 +12: 572 A 1.151147 0.124738 7.820457 +12: 573 T 0.284221 0.194948 7.259562 +12: 574 T -0.557004 0.150871 8.121720 +12: 575 T 0.531261 0.133317 7.705036 +12: 576 T 1.240177 0.109625 8.080192 +12: 577 A 1.233392 0.108421 8.062259 +12: 578 G 0.709108 0.106319 7.812791 +12: 579 C 0.410596 0.087618 8.145637 +12: 580 T 0.457344 0.099777 8.049680 +12: 581 T 0.290740 0.099987 8.435909 +12: 582 T 1.302000 0.130621 7.744569 +12: 583 T 0.773263 0.118159 7.705857 +12: 584 T 1.475547 0.143461 8.661454 +12: 585 C 0.430492 0.170265 7.779425 +12: 586 T 0.839619 0.139641 8.278427 +12: 587 C -0.200776 0.157649 7.510916 +12: 588 T -0.546136 0.182741 8.881922 +12: 589 G 1.832598 0.164956 8.361652 +12: 590 T 1.566273 0.121332 9.116512 +12: 591 A 0.300091 0.186477 8.080286 +12: 592 A 0.461733 0.138491 10.743159 +12: 593 T -0.402121 0.197353 8.996448 +12: 594 T -0.894658 0.115531 9.138332 +12: 595 G -0.542551 0.151287 7.720534 +12: 596 T 1.008739 0.157621 8.185129 +12: 597 A 0.505789 0.128562 7.612628 +12: 598 A 0.966798 0.145344 8.932740 +12: 599 G 0.022977 0.212905 8.173976 +12: 600 T -0.532864 0.153095 10.262908 +12: 601 C 0.737053 0.259955 12.031479 +12: 602 T -0.036625 0.303160 10.349803 +12: 603 G -0.572062 0.335164 12.230330 +12: 604 C 0.561030 0.467363 9.792212 +12: 605 T -0.235200 0.581865 6.671800 + 9/19 Test #12: test_squiggle_r10 ................ Passed 1.26 sec +1: Test: Decoding same as Sloika ...passed 11: #one 11: pos base current sd dwell 11: 0 T -0.010010 0.502173 1.176593 @@ -321655,7 +324303,6 @@ 11: 2515 A -0.423683 0.118824 7.145892 11: 2516 T 1.096181 0.195750 7.263324 11: 2517 G -0.216749 0.161250 7.357249 -1: Test: Decoding of original and vectorised posterior same ...passed 11: 2518 A -0.915567 0.121125 7.266725 11: 2519 A -1.104245 0.093258 8.343531 11: 2520 A -0.859199 0.119295 5.980935 @@ -323617,988 +326264,6 @@ 11: 925 A -0.018874 0.089922 6.853956 11: 926 C 0.314718 0.107410 7.636093 11: 927 T 0.989649 0.215371 8.224966 -12: 2526 T 1.226972 0.187758 8.868389 -12: 2527 A 0.326663 0.163646 8.637415 -12: 2528 A 0.776825 0.159115 7.422452 -12: 2529 A -0.622245 0.205832 7.580650 -12: 2530 T -1.265517 0.217479 8.306485 -12: 2531 A 0.628805 0.121661 8.164207 -12: 2532 T 0.769511 0.098043 8.199687 -12: 2533 A 0.350800 0.127996 8.210618 -12: 2534 A -0.141438 0.109709 8.702918 -12: 2535 T 0.242651 0.102963 8.906513 -12: 2536 T 0.491109 0.120859 8.978339 -12: 2537 C -0.153347 0.134612 9.338113 -12: 2538 C 1.066516 0.127692 8.513339 -12: 2539 T 0.594936 0.148811 7.963649 -12: 2540 T -0.379407 0.161337 6.392164 -12: 2541 A -0.659223 0.108110 7.778077 -12: 2542 T -0.576142 0.108834 6.999051 -12: 2543 C -0.843715 0.130818 6.598724 -12: 2544 A -1.437682 0.135279 7.597930 -12: 2545 A -1.514829 0.124043 8.375982 -12: 2546 G -1.103884 0.122612 7.674520 -12: 2547 G -0.764696 0.161371 7.748152 -12: 2548 G 0.175790 0.134796 8.036445 -12: 2549 A -0.004486 0.092964 7.420146 -12: 2550 A -0.341161 0.127355 7.378166 -12: 2551 A -0.928757 0.137549 7.299687 -12: 2552 C -1.420619 0.184846 7.187764 -12: 2553 T 0.516770 0.172238 7.991004 -12: 2554 T 1.209236 0.132782 8.721268 -12: 2555 C 1.472676 0.122889 8.505735 -12: 2556 A 1.316731 0.137611 7.890669 -12: 2557 T -0.069831 0.213390 6.807758 -12: 2558 T -0.617375 0.194515 7.804194 -12: 2559 T 1.544968 0.190930 7.108366 -12: 2560 T 0.668908 0.243240 7.406156 -12: 2561 A -0.883512 0.149727 8.009659 -12: 2562 A -1.634685 0.122577 8.049137 -12: 2563 T -1.398357 0.110037 8.988862 -12: 2564 A -0.786857 0.100302 8.384510 -12: 2565 G -0.620314 0.109937 8.754931 -12: 2566 A -1.176952 0.137542 8.881434 -12: 2567 A -0.128371 0.133560 8.570903 -12: 2568 A -0.713346 0.138379 8.649867 -12: 2569 G 0.599217 0.158987 8.227661 -12: 2570 G -0.482809 0.249785 7.666263 -12: 2571 T -1.283436 0.205650 10.129151 -12: 2572 A 0.217471 0.195993 10.924161 -12: 2573 T -0.527437 0.183608 10.333318 -12: 2574 G 0.289440 0.216070 11.379429 -12: 2575 A -0.470523 0.228475 10.162048 -12: 2576 C -1.309896 0.346120 11.664120 -12: 2577 A 0.710910 0.445684 9.001451 -12: 2578 C -0.044387 0.550503 7.497941 -12: #two -12: pos base current sd dwell -12: 0 C 0.683936 0.292595 0.787175 -12: 1 T 0.285399 0.223970 1.363220 -12: 2 T 0.233159 0.229233 1.925318 -12: 3 T -0.284285 0.202461 3.632945 -12: 4 T 1.513357 0.179336 6.751537 -12: 5 C 0.495119 0.192543 6.420651 -12: 6 C 0.220424 0.123044 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840 C 1.468495 0.114006 7.618266 -12: 841 T 1.346177 0.125116 7.948597 -12: 842 C 0.507266 0.142388 8.382962 -12: 843 T 0.458335 0.120797 7.889842 -12: 844 T 1.751838 0.167964 7.505050 -12: 845 T 0.824843 0.254060 8.579382 -12: 846 G -0.668418 0.143617 8.836393 -12: 847 C -0.854191 0.113270 8.235130 -12: 848 T -0.681843 0.160025 6.497253 -12: 849 A 0.912011 0.193077 7.538339 -12: 850 G -0.295676 0.148624 7.810137 -12: 851 A 0.623740 0.172603 7.462111 -12: 852 G -0.741735 0.229331 7.181033 -12: 853 C -1.462626 0.150396 9.049275 -12: 854 A -0.192243 0.161587 7.037226 -12: 855 T -1.026400 0.135025 7.107962 -12: 856 A -1.304114 0.110389 6.801595 -12: 857 A -1.262507 0.115377 7.612866 -12: 858 C -1.195643 0.109655 7.481505 -12: 859 A -1.002681 0.115011 7.333045 -12: 860 A -0.774107 0.149281 6.822145 -12: 861 A 0.795120 0.155105 8.467321 -12: 862 G 0.045140 0.151132 7.223375 -12: 863 A -0.887827 0.129705 7.501885 -12: 864 G -0.387842 0.124788 6.927849 -12: 865 T -0.064752 0.103268 7.218560 -12: 866 C 0.480060 0.110928 7.963939 -12: 867 A 0.614648 0.105091 7.352736 -12: 868 C 1.202985 0.130696 7.944008 -12: 869 T 0.288374 0.204837 6.958231 -12: 870 T 1.409679 0.144649 7.267876 -12: 871 T 1.535589 0.121553 8.117357 -12: 872 T 0.986204 0.152978 8.163510 -12: 873 A 0.503143 0.110818 7.939424 -12: 874 T 0.847660 0.135894 7.473748 -12: 875 T -0.446286 0.189563 7.436403 -12: 876 C -0.981246 0.173357 9.234297 -12: 877 C 1.083422 0.130830 8.237361 -12: 878 T 0.810071 0.109244 9.343346 -12: 879 A 0.786057 0.123261 9.004956 -12: 880 A 0.326034 0.110125 9.793424 -12: 881 T -0.422793 0.134059 9.198938 -12: 882 C -1.319313 0.118737 8.346907 -12: 883 C -1.180917 0.186940 8.151896 -12: 884 C 1.238779 0.169846 7.664610 -12: 885 C 1.698921 0.134090 8.018693 -12: 886 A 0.719712 0.226947 7.958680 -12: 887 A -0.516905 0.165390 8.699146 -12: 888 T 0.648675 0.118543 8.596214 -12: 889 T 0.788733 0.111358 9.242885 -12: 890 A 0.558315 0.122390 8.252996 -12: 891 G 0.213257 0.106676 7.738366 -12: 892 T 0.506814 0.111613 7.832068 -12: 893 T -0.082847 0.139399 7.504026 -12: 894 C -0.718765 0.154299 7.474746 -12: 895 C 1.219995 0.175911 7.363104 -12: 896 T 0.257746 0.179918 8.496624 -12: 897 C 1.541839 0.150549 9.064358 -12: 898 A 0.931403 0.169742 7.489445 -12: 899 T 0.527443 0.156622 8.163537 -12: 900 G -0.306690 0.124511 8.165930 -12: 901 T 0.696285 0.129516 7.877397 -12: 902 C 0.277346 0.107683 8.330823 -12: 903 C 0.999716 0.139050 7.982317 -12: 904 A 0.492418 0.172543 8.041596 -12: 905 T 1.413500 0.161476 9.054226 -12: 906 C 0.196023 0.242968 8.028413 -12: 907 T -0.818297 0.172723 8.410040 -12: 908 A 0.924136 0.144878 8.209350 -12: 909 T 0.485136 0.124072 7.973967 -12: 910 G -0.320418 0.120914 7.193840 -12: 911 A -0.184015 0.118072 8.249662 -12: 912 C -0.572857 0.099377 9.138751 -12: 913 C 0.258631 0.112806 9.424241 -12: 914 A 0.110542 0.128213 8.327389 -12: 915 C -0.632591 0.107078 8.020502 -12: 916 C -0.660664 0.142349 7.863237 -12: 917 T 1.258562 0.158728 8.410666 -12: 918 C 0.959553 0.115968 8.155495 -12: 919 A 1.806448 0.149483 8.726682 -12: 920 G 0.585313 0.214185 8.891140 -12: 921 T 0.637977 0.133747 8.932821 -12: 922 C -0.167980 0.132328 7.867389 -12: 923 T 0.385351 0.135030 8.694772 -12: 924 G 1.467777 0.122657 8.328823 -12: 925 T 1.156436 0.141427 7.031806 -12: 926 A 0.296050 0.161997 7.324454 11: 928 G -0.823620 0.182883 9.532703 11: 929 T 1.573712 0.225036 8.878208 11: 930 C -0.339260 0.145216 8.672433 @@ -325257,1640 +326922,11 @@ 11: 603 G -0.348534 0.163240 9.530726 11: 604 C 0.161046 0.266937 15.063370 11: 605 T 0.194787 0.502125 16.019979 - 9/19 Test #11: test_squiggle_r94 ................ Passed 3.91 sec +10/19 Test #11: test_squiggle_r94 ................ Passed 1.46 sec +1: Test: Decoding of original and vectorised posterior same ...passed +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Decoding of original and vectorised posterior same with stay penalty ...passed -12: 927 C -0.836543 0.154324 7.840771 -12: 928 T 0.824620 0.159619 7.303352 -12: 929 T 1.516867 0.156615 7.500090 -12: 930 C 0.606284 0.184294 7.298989 -12: 931 A 1.043579 0.110777 7.811698 -12: 932 T 0.678175 0.127680 7.811415 -12: 933 T 0.491481 0.134062 6.527992 -12: 934 G -0.429046 0.157480 6.320044 -12: 935 T 0.922938 0.159099 7.725515 -12: 936 C 0.104719 0.156039 7.035413 -12: 937 C 0.921606 0.131882 7.570480 -12: 938 A 0.468528 0.136761 8.373512 -12: 939 T -0.233883 0.121816 7.398219 -12: 940 A 0.478074 0.124063 7.105650 -12: 941 T 0.704384 0.148297 7.284638 -12: 942 C 0.001589 0.144579 7.488897 -12: 943 A 0.801807 0.133562 8.152879 -12: 944 C 0.364216 0.183241 7.578341 -12: 945 T -0.882561 0.132152 7.587413 -12: 946 A -0.652053 0.173589 7.907542 -12: 947 T 0.675084 0.150344 9.293988 -12: 948 C -0.473562 0.135729 7.185311 -12: 949 A 0.718769 0.122492 6.793722 -12: 950 A 0.741845 0.103252 7.857662 -12: 951 C 0.694930 0.097395 8.786675 -12: 952 A 0.827716 0.121227 8.113749 -12: 953 T -0.060348 0.154111 8.130879 -12: 954 T -0.769988 0.148256 9.636827 -12: 955 T 1.145406 0.149651 9.542684 -12: 956 T 0.801556 0.150560 8.903566 -12: 957 G -0.103633 0.141350 8.525404 -12: 958 G -0.654515 0.114158 9.238344 -12: 959 T -0.109882 0.132522 7.749656 -12: 960 C -0.049007 0.137675 8.080609 -12: 961 A -0.728500 0.159380 9.117578 -12: 962 G 1.056707 0.203967 10.732745 -12: 963 C 0.456521 0.241099 10.887148 -12: 964 C -1.150307 0.354650 12.689854 -12: 965 A -0.271926 0.402136 8.877912 -12: 966 T 0.772311 0.468290 8.768564 -12: 967 C 0.108853 0.646274 4.563419 -12: #three -12: pos base current sd dwell -12: 0 A 0.194531 0.466289 0.664201 -12: 1 A 0.389374 0.274129 0.702117 -12: 2 C 0.458795 0.167471 0.980090 -12: 3 T 0.820551 0.181883 1.920549 -12: 4 A 0.199941 0.209090 3.467375 -12: 5 T 1.133969 0.155373 6.055004 -12: 6 T 0.146696 0.177014 7.208705 -12: 7 T -0.461757 0.146594 8.434957 -12: 8 G 1.412970 0.178561 9.828811 -12: 9 T 0.237920 0.260806 7.618450 -12: 10 A -0.616556 0.156979 9.463008 -12: 11 G 0.349681 0.125499 8.900707 -12: 12 T 0.754644 0.123813 9.242629 -12: 13 A -0.169244 0.239457 8.897007 -12: 14 A -1.532825 0.124901 10.651422 -12: 15 C -1.311223 0.154579 8.523790 -12: 16 T 0.261831 0.144117 8.577490 -12: 17 A 0.631973 0.142577 9.013230 -12: 18 G -0.339021 0.191501 7.741058 -12: 19 A -1.582255 0.133524 8.782442 -12: 20 C -1.907856 0.110940 8.226819 -12: 21 C -1.524941 0.107874 6.978805 -12: 22 A -0.926058 0.123258 7.033770 -12: 23 G -0.943819 0.118860 7.005568 -12: 24 A -0.964414 0.127365 8.226535 -12: 25 G -0.260639 0.151053 7.242905 -12: 26 A -1.317599 0.134370 8.023639 -12: 27 G -1.458219 0.151799 8.409880 -12: 28 A -0.617784 0.129734 9.277251 -12: 29 C -0.021105 0.153281 9.081404 -12: 30 A -0.791257 0.184087 9.235856 -12: 31 A -1.239373 0.181618 8.915600 -12: 32 C 0.047039 0.152232 8.603275 -12: 33 T 0.921908 0.134820 7.844660 -12: 34 G 1.449185 0.163315 8.219681 -12: 35 A -0.194276 0.277426 7.350735 -12: 36 C -1.141839 0.221778 8.223403 -12: 37 T 0.736714 0.170309 8.162269 -12: 38 T 0.186870 0.159084 7.124819 -12: 39 A 1.301197 0.131300 7.397046 -12: 40 A 0.849621 0.109692 7.242057 -12: 41 T 0.481949 0.105139 7.547513 -12: 42 A 0.584914 0.101139 7.569026 -12: 43 T 0.586633 0.093876 8.120745 -12: 44 T 0.862304 0.115893 8.364097 -12: 45 T 0.413857 0.109771 8.966250 -12: 46 T 1.219950 0.127949 8.435715 -12: 47 T 0.612437 0.116372 8.072063 -12: 48 T 1.133430 0.142042 7.986037 -12: 49 C 0.231924 0.245874 6.693006 -12: 50 T -0.741897 0.112157 8.681315 -12: 51 C -0.374720 0.125379 6.617100 -12: 52 T 0.886103 0.130334 6.529531 -12: 53 A 1.931987 0.155232 8.417784 -12: 54 A 0.844743 0.244285 6.606440 -12: 55 G -0.200973 0.120896 9.345866 -12: 56 C 0.336037 0.132487 7.970405 -12: 57 T -0.538969 0.158122 8.631532 -12: 58 G -0.707098 0.151874 9.431744 -12: 59 C 0.625952 0.138378 7.721506 -12: 60 T 0.378977 0.110916 7.321187 -12: 61 A 1.298983 0.174402 7.198901 -12: 62 A -0.467949 0.232370 8.180008 -12: 63 C -1.217207 0.203775 9.338160 -12: 64 C 0.961040 0.176405 8.598479 -12: 65 T 0.075419 0.178918 7.207029 -12: 66 A 1.412459 0.156096 8.646811 -12: 67 A 0.455003 0.171909 8.131435 -12: 68 T 0.199596 0.126959 7.807754 -12: 69 G 1.118834 0.144461 9.007238 -12: 70 T 0.430220 0.217219 8.034854 -12: 71 A -0.032652 0.129918 8.752954 -12: 72 C -0.736991 0.133947 8.095820 -12: 73 T -1.173671 0.107813 7.751163 -12: 74 G -0.806741 0.106492 7.961955 -12: 75 C -0.639498 0.131418 6.697164 -12: 76 A -1.010172 0.133156 8.658316 -12: 77 G -0.785651 0.174067 7.975616 -12: 78 A 0.732104 0.145619 7.914045 -12: 79 G 0.065103 0.137359 7.141830 -12: 80 G 0.381731 0.106610 8.014958 -12: 81 A 0.064515 0.121386 7.566723 -12: 82 T -0.829250 0.155821 6.073418 -12: 83 C -0.372746 0.120989 7.569700 -12: 84 T -0.546595 0.177340 6.251983 -12: 85 T 1.088768 0.193728 8.608768 -12: 86 G -0.170576 0.165381 6.948389 -12: 87 C 1.080942 0.173822 9.043413 -12: 88 A 0.335091 0.215876 8.687878 -12: 89 C 1.269030 0.188671 9.163470 -12: 90 A 0.231098 0.206012 10.060018 -12: 91 T 1.095770 0.162022 9.830549 -12: 92 A 0.051105 0.151471 9.842400 -12: 93 T 0.936948 0.113486 10.627291 -12: 94 G 1.133011 0.132472 9.253921 -12: 95 T 0.437288 0.116951 8.717112 -12: 96 A 1.105206 0.130166 9.401725 -12: 97 T 0.364407 0.231965 7.795523 -12: 98 T -0.872986 0.125799 8.803679 -12: 99 C -1.053215 0.118154 7.781288 -12: 100 T -1.309698 0.127863 7.333891 -12: 101 G -1.156789 0.123995 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0.106319 7.812791 -12: 579 C 0.410596 0.087618 8.145637 -12: 580 T 0.457344 0.099777 8.049680 -12: 581 T 0.290740 0.099987 8.435909 -12: 582 T 1.302000 0.130621 7.744569 -12: 583 T 0.773263 0.118159 7.705857 -12: 584 T 1.475547 0.143461 8.661454 -12: 585 C 0.430492 0.170265 7.779425 -12: 586 T 0.839619 0.139641 8.278427 -12: 587 C -0.200776 0.157649 7.510916 -12: 588 T -0.546136 0.182741 8.881922 -12: 589 G 1.832598 0.164956 8.361652 -12: 590 T 1.566273 0.121332 9.116512 -12: 591 A 0.300091 0.186477 8.080286 -12: 592 A 0.461733 0.138491 10.743159 -12: 593 T -0.402121 0.197353 8.996448 -12: 594 T -0.894658 0.115531 9.138332 -12: 595 G -0.542551 0.151287 7.720534 -12: 596 T 1.008739 0.157621 8.185129 -12: 597 A 0.505789 0.128562 7.612628 -12: 598 A 0.966798 0.145344 8.932740 -12: 599 G 0.022977 0.212905 8.173976 -12: 600 T -0.532864 0.153095 10.262908 -12: 601 C 0.737053 0.259955 12.031479 -12: 602 T -0.036625 0.303160 10.349803 -12: 603 G -0.572062 0.335164 12.230330 -12: 604 C 0.561030 0.467363 9.792212 -12: 605 T -0.235200 0.581865 6.671800 -10/19 Test #12: test_squiggle_r10 ................ Passed 4.20 sec -3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } -3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } 3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Decoding of original and vectorised posterior same with skip penalty ...passed 1: Suite: Test output of vectorised ELU unit @@ -326934,10 +326970,6 @@ 1: Test: Test assumptions about bounds -- overlap ...scrappie_unittest: Blocks 3 and 4 don't overlap [3 , 3) -> [4 , 6) 1: 1: passed -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } -1: Test: Test mapping -- viterbi ...passed 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.231445 over 12818 blocks (0.903513 per block) 10: block pos 10: 0 -1 @@ -339758,20 +339790,17 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } -11/19 Test #10: test_seqmappy .................... Passed 7.08 sec +11/19 Test #10: test_seqmappy .................... Passed 3.97 sec +1: Test: Test mapping -- viterbi ...passed 1: Test: Test mapping -- forward ...passed -3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } -3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT -12/19 Test #3: test_raw_call .................... Passed 8.37 sec -5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } -5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -13/19 Test #5: test_rawrgrgr_r941_call .......... Passed 8.54 sec +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 +4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } +4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +12/19 Test #4: test_rawrgrgr_r94_call ........... Passed 6.65 sec 1: Test: Test mapping -- viterbi with path ...Viterbi mapping path 1: 0, 0, 0, 0, 0, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3 1: , 3, 4, 4, 4, 5, 5, 6, 6, 6, 6, 7, 7, 8, 8, 8, 8, 8, 9, 9, 9 @@ -339824,27 +339853,25 @@ 1: , 156, 156, 156, 156, 156, 156, 157, 157, 157, 157, 157, 157, 157, 158, 158, 158, 158, 159, 159, 160 1: , 160, 160, 160, 160, 160, 160, 161, 161, 161, 161, 161, 161, 161, 161, 161, 162, 162, 162, 162, 162 1: passed -4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } +5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } +5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +13/19 Test #5: test_rawrgrgr_r941_call .......... Passed 7.13 sec 1: Test: Test mapping -- forwards score exceeds Viterbi ...vit = -109.542824 fwd = -87.884453 1: passed -4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 11.49 sec -2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } -2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } +3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA +3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } +3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } +3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT +14/19 Test #3: test_raw_call .................... Passed 7.41 sec 1: Test: Test mapping -- forwards with full band equals forwards ...fwd = -87.884453 fwdB = -87.884453 1: passed 1: Test: Test mapping -- Viterbi with full band equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed -7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } -7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } -6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } -6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } -6: TCTGGTTTTTTATTATGTTTTATCTTCCATA -15/19 Test #6: test_rawrgrgr_r10_call ........... Passed 13.72 sec 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi ...vit = -109.542824 vitB = -109.542824 @@ -339852,17 +339879,250 @@ 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 -2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } 1: passed -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -16/19 Test #2: test_events_call ................. Passed 15.95 sec 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed +2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT +2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } +2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +15/19 Test #2: test_events_call ................. Passed 10.58 sec 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed +6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } +6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA +6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } +6: TCTGGTTTTTTATTATGTTTTATCTTCCATA +16/19 Test #6: test_rawrgrgr_r10_call ........... Passed 10.75 sec 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed +1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Suite: Functions on scrappie matrices +1: Test: Row normalisation edge case nr 8 ...passed +1: Test: Row normalisation edge case nr 9 ...passed +1: Test: Row normalisation edge case nr 10 ...passed +1: Test: Row normalisation edge case nr 11 ...passed +1: Suite: Test manipulating signal +1: Test: Normalise trimmed signal ...passed +1: Test: Trimming of raw signal ...passed +1: Suite: Test sequence-to-squiggle +1: Test: Short sequence to squiggle with network parameterisation ...# Squiggle with network parameters +1: 0 : -7.100222e-02 -1.052642e+00 1.414901e-01 +1: 1 : -7.592717e-01 -1.105536e+00 -4.640082e-01 +1: 2 : 6.517259e-01 -1.619675e+00 -1.508518e+00 +1: 3 : 7.911155e-01 -1.961320e+00 -1.867191e+00 +1: 4 : -4.636365e-02 -2.309864e+00 -2.113610e+00 +1: 5 : 3.253556e-01 -2.105663e+00 -2.100757e+00 +1: 6 : -2.154961e-01 -2.309796e+00 -2.132698e+00 +1: 7 : -3.571292e-02 -2.083405e+00 -2.042708e+00 +1: 8 : 1.599802e+00 -1.887870e+00 -2.025741e+00 +1: 9 : 8.314085e-01 -2.451915e+00 -2.454266e+00 +1: 10 : 6.323134e-01 -2.240801e+00 -2.265080e+00 +1: 11 : -6.508422e-01 -1.993278e+00 -2.375013e+00 +1: 12 : -5.089763e-01 -2.072061e+00 -2.146450e+00 +1: 13 : 8.102253e-01 -2.133760e+00 -2.323975e+00 +1: 14 : 8.833820e-02 -2.125255e+00 -2.124305e+00 +1: 15 : 1.071858e+00 -1.749681e+00 -2.241458e+00 +1: 16 : -2.662371e-01 -2.307614e+00 -2.348673e+00 +1: 17 : 2.526874e-01 -2.248703e+00 -2.320865e+00 +1: 18 : 9.335266e-01 -1.882824e+00 -2.341311e+00 +1: 19 : -3.805782e-01 -1.794182e+00 -2.349835e+00 +1: 20 : -1.473435e+00 -2.014107e+00 -2.131543e+00 +1: 21 : -1.468751e+00 -1.995398e+00 -2.432606e+00 +1: 22 : 5.183253e-01 -1.618705e+00 -2.231401e+00 +1: 23 : -1.178945e+00 -1.925591e+00 -2.094005e+00 +1: 24 : -4.925162e-01 -2.034039e+00 -2.007017e+00 +1: 25 : 7.687722e-01 -1.832321e+00 -2.014938e+00 +1: 26 : -3.909144e-01 -1.958265e+00 -1.838261e+00 +1: 27 : -9.566960e-01 -2.116315e+00 -1.882866e+00 +1: 28 : -1.504592e+00 -1.967939e+00 -1.786390e+00 +1: 29 : -1.584746e+00 -1.986520e+00 -2.088347e+00 +1: 30 : 7.169726e-01 -1.573472e+00 -1.709084e+00 +1: 31 : -5.171665e-01 -1.965511e+00 -1.954707e+00 +1: 32 : -9.571309e-01 -2.094756e+00 -1.757891e+00 +1: 33 : -1.530293e+00 -1.958263e+00 -1.948082e+00 +1: 34 : -7.154673e-01 -2.065584e+00 -2.075371e+00 +1: 35 : 1.340190e-01 -1.944091e+00 -1.914026e+00 +1: 36 : 1.544947e+00 -1.929502e+00 -2.150595e+00 +1: 37 : 7.528057e-01 -2.257131e+00 -1.926496e+00 +1: 38 : 2.406347e-01 -2.208216e+00 -2.034885e+00 +1: 39 : -5.725307e-01 -1.883131e+00 -2.108053e+00 +1: 40 : 1.791558e+00 -1.536994e+00 -2.167133e+00 +1: 41 : 1.642266e-01 -1.959490e+00 -2.100835e+00 +1: 42 : 1.738289e+00 -1.946394e+00 -2.119461e+00 +1: 43 : 9.157931e-01 -2.115188e+00 -2.043411e+00 +1: 44 : 1.088121e-01 -2.110393e+00 -2.055440e+00 +1: 45 : -2.463773e-01 -2.352781e+00 -2.026276e+00 +1: 46 : -2.968376e-01 -2.384610e+00 -1.996209e+00 +1: 47 : -2.164531e-01 -2.447103e+00 -1.998921e+00 +1: 48 : -1.930564e-01 -2.436937e+00 -2.000106e+00 +1: 49 : -1.830719e-01 -2.442657e+00 -2.056543e+00 +1: 50 : -1.657240e-01 -2.444262e+00 -2.075977e+00 +1: 51 : -1.614439e-01 -2.459783e+00 -2.059981e+00 +1: 52 : -1.486868e-01 -2.461916e+00 -2.067977e+00 +1: 53 : -1.427199e-01 -2.468782e+00 -2.054369e+00 +1: 54 : -1.372803e-01 -2.467317e+00 -2.054323e+00 +1: 55 : -1.326133e-01 -2.470593e+00 -2.053199e+00 +1: 56 : -1.302194e-01 -2.473777e+00 -2.056859e+00 +1: 57 : -1.261704e-01 -2.478879e+00 -2.061419e+00 +1: 58 : -1.243679e-01 -2.484729e+00 -2.086884e+00 +1: 59 : -1.173265e-01 -2.494588e+00 -2.133612e+00 +1: 60 : -1.214529e-01 -2.494635e+00 -2.183348e+00 +1: 61 : -1.293582e-01 -2.506257e+00 -2.171958e+00 +1: 62 : -1.191051e-01 -2.497786e+00 -2.145566e+00 +1: 63 : -1.195273e-01 -2.507583e+00 -2.283516e+00 +1: 64 : -1.336055e-01 -2.507490e+00 -2.176662e+00 +1: 65 : -1.368918e-01 -2.529756e+00 -2.196912e+00 +1: 66 : -1.233890e-01 -2.436671e+00 -1.958676e+00 +1: 67 : -1.247224e-01 -2.504339e+00 -2.117309e+00 +1: 68 : -1.032085e-01 -2.471079e+00 -2.012799e+00 +1: 69 : -2.071139e-01 -2.406339e+00 -1.964724e+00 +1: 70 : -2.314971e-01 -2.482945e+00 -2.155415e+00 +1: 71 : -2.581455e-01 -2.333455e+00 -1.886001e+00 +1: 72 : -6.401938e-01 -2.226488e+00 -2.015915e+00 +1: 73 : -7.949377e-01 -2.196288e+00 -2.162808e+00 +1: 74 : -8.079978e-01 -2.362137e+00 -2.147486e+00 +1: 75 : -1.083655e+00 -1.982127e+00 -2.269919e+00 +1: 76 : 1.037179e+00 -1.306082e+00 -2.118258e+00 +1: 77 : -8.516058e-01 -2.005135e+00 -2.194561e+00 +1: 78 : 1.016745e+00 -2.144597e+00 -1.807433e+00 +1: 79 : 7.776245e-01 -1.778889e+00 -1.912730e+00 +1: 80 : -7.908624e-01 -1.996992e+00 -2.312429e+00 +1: 81 : 1.090484e+00 -2.140350e+00 -2.126710e+00 +1: 82 : 1.015684e+00 -2.173901e+00 -2.125421e+00 +1: 83 : 1.260068e-01 -2.163344e+00 -1.811512e+00 +1: 84 : -1.337411e-01 -2.389348e+00 -1.904007e+00 +1: 85 : -3.989461e-01 -2.244048e+00 -1.749086e+00 +1: 86 : -9.542197e-01 -2.211177e+00 -1.788534e+00 +1: 87 : -9.941038e-01 -1.815204e+00 -1.902731e+00 +1: 88 : 2.104662e+00 -1.513922e+00 -2.045570e+00 +1: 89 : 9.999876e-01 -2.050895e+00 -2.244490e+00 +1: 90 : -7.696630e-02 -1.947020e+00 -2.157029e+00 +1: 91 : -9.479131e-01 -2.263503e+00 -2.090311e+00 +1: 92 : -1.952076e+00 -1.847213e+00 -2.148435e+00 +1: 93 : 1.132581e-01 -2.016356e+00 -2.078692e+00 +1: 94 : 2.403807e-01 -2.336333e+00 -2.143608e+00 +1: 95 : 1.057027e+00 -1.977065e+00 -2.303994e+00 +1: 96 : 3.843040e-01 -2.226576e+00 -2.423552e+00 +1: 97 : 7.154019e-01 -1.956273e+00 -2.181569e+00 +1: 98 : 2.062936e-01 -1.297073e+00 -2.801933e+00 +1: 99 : -4.569919e-01 -6.026990e-01 -2.507457e+00 +1: passed +1: Test: Short sequence to squiggle with transformed parameterisation ...# Squiggle with transformed parameters +1: 0 : -7.100222e-02 3.490146e-01 8.680637e-01 +1: 1 : -7.592717e-01 3.310335e-01 1.590436e+00 +1: 2 : 6.517259e-01 1.979630e-01 4.520027e+00 +1: 3 : 7.911155e-01 1.406727e-01 6.470098e+00 +1: 4 : -4.636365e-02 9.927477e-02 8.278069e+00 +1: 5 : 3.253556e-01 1.217649e-01 8.172357e+00 +1: 6 : -2.154961e-01 9.928147e-02 8.437597e+00 +1: 7 : -3.571292e-02 1.245055e-01 7.711463e+00 +1: 8 : 1.599802e+00 1.513939e-01 7.581724e+00 +1: 9 : 8.314085e-01 8.612853e-02 1.163788e+01 +1: 10 : 6.323134e-01 1.063733e-01 9.631895e+00 +1: 11 : -6.508422e-01 1.362481e-01 1.075115e+01 +1: 12 : -5.089763e-01 1.259260e-01 8.554433e+00 +1: 13 : 8.102253e-01 1.183913e-01 1.021620e+01 +1: 14 : 8.833820e-02 1.194025e-01 8.367081e+00 +1: 15 : 1.071858e+00 1.738294e-01 9.407034e+00 +1: 16 : -2.662371e-01 9.949841e-02 1.047167e+01 +1: 17 : 2.526874e-01 1.055360e-01 1.018448e+01 +1: 18 : 9.335266e-01 1.521598e-01 1.039486e+01 +1: 19 : -3.805782e-01 1.662634e-01 1.048384e+01 +1: 20 : -1.473435e+00 1.334395e-01 8.427864e+00 +1: 21 : -1.468751e+00 1.359596e-01 1.138852e+01 +1: 22 : 5.183253e-01 1.981551e-01 9.312908e+00 +1: 23 : -1.178945e+00 1.457896e-01 8.117357e+00 +1: 24 : -4.925162e-01 1.308061e-01 7.441085e+00 +1: 25 : 7.687722e-01 1.600417e-01 7.500263e+00 +1: 26 : -3.909144e-01 1.411030e-01 6.285598e+00 +1: 27 : -9.566960e-01 1.204748e-01 6.572314e+00 +1: 28 : -1.504592e+00 1.397446e-01 5.967870e+00 +1: 29 : -1.584746e+00 1.371720e-01 8.071564e+00 +1: 30 : 7.169726e-01 2.073242e-01 5.523900e+00 +1: 31 : -5.171665e-01 1.400842e-01 7.061852e+00 +1: 32 : -9.571309e-01 1.231003e-01 5.800190e+00 +1: 33 : -1.530293e+00 1.411033e-01 7.015221e+00 +1: 34 : -7.154673e-01 1.267443e-01 7.967502e+00 +1: 35 : 1.340190e-01 1.431173e-01 6.780335e+00 +1: 36 : 1.544947e+00 1.452205e-01 8.589970e+00 +1: 37 : 7.528057e-01 1.046503e-01 6.865414e+00 +1: 38 : 2.406347e-01 1.098965e-01 7.651375e+00 +1: 39 : -5.725307e-01 1.521131e-01 8.232198e+00 +1: 40 : 1.791558e+00 2.150264e-01 8.733207e+00 +1: 41 : 1.642266e-01 1.409303e-01 8.172995e+00 +1: 42 : 1.738289e+00 1.427880e-01 8.326647e+00 +1: 43 : 9.157931e-01 1.206106e-01 7.716887e+00 +1: 44 : 1.088121e-01 1.211904e-01 7.810273e+00 +1: 45 : -2.463773e-01 9.510433e-02 7.585787e+00 +1: 46 : -2.968376e-01 9.212491e-02 7.361097e+00 +1: 47 : -2.164531e-01 8.654394e-02 7.381091e+00 +1: 48 : -1.930564e-01 8.742826e-02 7.389842e+00 +1: 49 : -1.830719e-01 8.692955e-02 7.818890e+00 +1: 50 : -1.657240e-01 8.679014e-02 7.972329e+00 +1: 51 : -1.614439e-01 8.545349e-02 7.845820e+00 +1: 52 : -1.486868e-01 8.527137e-02 7.908805e+00 +1: 53 : -1.427199e-01 8.468797e-02 7.801917e+00 +1: 54 : -1.372803e-01 8.481213e-02 7.801556e+00 +1: 55 : -1.326133e-01 8.453473e-02 7.792791e+00 +1: 56 : -1.302194e-01 8.426598e-02 7.821364e+00 +1: 57 : -1.261704e-01 8.383711e-02 7.857110e+00 +1: 58 : -1.243679e-01 8.334816e-02 8.059758e+00 +1: 59 : -1.173265e-01 8.253042e-02 8.445313e+00 +1: 60 : -1.214529e-01 8.252656e-02 8.875977e+00 +1: 61 : -1.293582e-01 8.157299e-02 8.775450e+00 +1: 62 : -1.191051e-01 8.226693e-02 8.546880e+00 +1: 63 : -1.195273e-01 8.146491e-02 9.811115e+00 +1: 64 : -1.336055e-01 8.147245e-02 8.816829e+00 +1: 65 : -1.368918e-01 7.967844e-02 8.997186e+00 +1: 66 : -1.233890e-01 8.745151e-02 7.089930e+00 +1: 67 : -1.247224e-01 8.172958e-02 8.308747e+00 +1: 68 : -1.032085e-01 8.449367e-02 7.484239e+00 +1: 69 : -2.071139e-01 9.014467e-02 7.132941e+00 +1: 70 : -2.314971e-01 8.349697e-02 8.631474e+00 +1: 71 : -2.581455e-01 9.696014e-02 6.592949e+00 +1: 72 : -6.401938e-01 1.079067e-01 7.507593e+00 +1: 73 : -7.949377e-01 1.112152e-01 8.695518e+00 +1: 74 : -8.079978e-01 9.421863e-02 8.563301e+00 +1: 75 : -1.083655e+00 1.377758e-01 9.678620e+00 +1: 76 : 1.037179e+00 2.708792e-01 8.316633e+00 +1: 77 : -8.516058e-01 1.346421e-01 8.976064e+00 +1: 78 : 1.016745e+00 1.171152e-01 6.094779e+00 +1: 79 : 7.776245e-01 1.688257e-01 6.771546e+00 +1: 80 : -7.908624e-01 1.357430e-01 1.009893e+01 +1: 81 : 1.090484e+00 1.176136e-01 8.387229e+00 +1: 82 : 1.015684e+00 1.137331e-01 8.376424e+00 +1: 83 : 1.260068e-01 1.149402e-01 6.119696e+00 +1: 84 : -1.337411e-01 9.168947e-02 6.712739e+00 +1: 85 : -3.989461e-01 1.060285e-01 5.749343e+00 +1: 86 : -9.542197e-01 1.095716e-01 5.980679e+00 +1: 87 : -9.941038e-01 1.628047e-01 6.704179e+00 +1: 88 : 2.104662e+00 2.200452e-01 7.733565e+00 +1: 89 : 9.999876e-01 1.286197e-01 9.435606e+00 +1: 90 : -7.696630e-02 1.426987e-01 8.645411e+00 +1: 91 : -9.479131e-01 1.039856e-01 8.087430e+00 +1: 92 : -1.952076e+00 1.576759e-01 8.571430e+00 +1: 93 : 1.132581e-01 1.331397e-01 7.994008e+00 +1: 94 : 2.403807e-01 9.668154e-02 8.530156e+00 +1: 95 : 1.057027e+00 1.384751e-01 1.001410e+01 +1: 96 : 3.843040e-01 1.078972e-01 1.128587e+01 +1: 97 : 7.154019e-01 1.413844e-01 8.860198e+00 +1: 98 : 2.062936e-01 2.733308e-01 1.647646e+01 +1: 99 : -4.569919e-01 5.473324e-01 1.227368e+01 +1: passed +1: Suite: Miscellaneous utility functions +1: Test: Median of odd length array ...passed +1: Test: Median of even length array ...passed +1: +1: Run Summary: Type Total Ran Passed Failed Inactive +1: suites 11 11 n/a 0 0 +1: tests 71 71 71 0 0 +1: asserts 506 506 506 0 n/a +1: +1: Elapsed time = 9.888 seconds +17/19 Test #1: unittest ......................... Passed 11.31 sec 9: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa (score = -35302.484375) 9: idx signal pos base current sd dwell 9: 0 nan -1 N nan nan nan @@ -344286,12 +344546,6 @@ 9: 4418 -1.268043 298 A -0.844572 0.171992 7.045560 9: 4419 -1.146634 298 A -0.844572 0.171992 7.045560 9: 4420 -1.200594 298 A -0.844572 0.171992 7.045560 -1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Suite: Functions on scrappie matrices -1: Test: Row normalisation edge case nr 8 ...passed -1: Test: Row normalisation edge case nr 9 ...passed -1: Test: Row normalisation edge case nr 10 ...passed 9: 4421 -1.254553 298 A -0.844572 0.171992 7.045560 9: 4422 -1.322002 298 A -0.844572 0.171992 7.045560 9: 4423 -0.256306 298 A -0.844572 0.171992 7.045560 @@ -366670,8 +366924,6 @@ 9: 26796 0.984757 2097 T 1.014885 0.210088 6.791260 9: 26797 1.052206 2097 T 1.014885 0.210088 6.791260 9: 26798 1.079185 2097 T 1.014885 0.210088 6.791260 -1: Test: Row normalisation edge case nr 11 ...passed -1: Suite: Test manipulating signal 9: 26799 0.849858 2097 T 1.014885 0.210088 6.791260 9: 26800 1.038716 2097 T 1.014885 0.210088 6.791260 9: 26801 1.119655 2097 T 1.014885 0.210088 6.791260 @@ -370758,7 +371010,6 @@ 9: 30882 -2.252799 2409 G -2.075850 0.193098 6.330229 9: 30883 -2.131391 2409 G -2.075850 0.193098 6.330229 9: 30884 -2.144881 2409 G -2.075850 0.193098 6.330229 -1: Test: Normalise trimmed signal ...passed 9: 30885 -2.252799 2409 G -2.075850 0.193098 6.330229 9: 30886 -2.414677 2409 G -2.075850 0.193098 6.330229 9: 30887 -2.279779 2409 G -2.075850 0.193098 6.330229 @@ -374843,222 +375094,6 @@ 9: 34966 -1.146634 2720 A -1.030503 0.133576 10.268675 9: 34967 -1.065695 2720 A -1.030503 0.133576 10.268675 9: 34968 -1.295022 2720 A -1.030503 0.133576 10.268675 -1: Test: Trimming of raw signal ...passed -1: Suite: Test sequence-to-squiggle -1: Test: Short sequence to squiggle with network parameterisation ...# Squiggle with network parameters -1: 0 : -7.100222e-02 -1.052642e+00 1.414901e-01 -1: 1 : -7.592717e-01 -1.105536e+00 -4.640082e-01 -1: 2 : 6.517259e-01 -1.619675e+00 -1.508518e+00 -1: 3 : 7.911155e-01 -1.961320e+00 -1.867191e+00 -1: 4 : -4.636365e-02 -2.309864e+00 -2.113610e+00 -1: 5 : 3.253556e-01 -2.105663e+00 -2.100757e+00 -1: 6 : -2.154961e-01 -2.309796e+00 -2.132698e+00 -1: 7 : -3.571292e-02 -2.083405e+00 -2.042708e+00 -1: 8 : 1.599802e+00 -1.887870e+00 -2.025741e+00 -1: 9 : 8.314085e-01 -2.451915e+00 -2.454266e+00 -1: 10 : 6.323134e-01 -2.240801e+00 -2.265080e+00 -1: 11 : -6.508422e-01 -1.993278e+00 -2.375013e+00 -1: 12 : -5.089763e-01 -2.072061e+00 -2.146450e+00 -1: 13 : 8.102253e-01 -2.133760e+00 -2.323975e+00 -1: 14 : 8.833820e-02 -2.125255e+00 -2.124305e+00 -1: 15 : 1.071858e+00 -1.749681e+00 -2.241458e+00 -1: 16 : -2.662371e-01 -2.307614e+00 -2.348673e+00 -1: 17 : 2.526874e-01 -2.248703e+00 -2.320865e+00 -1: 18 : 9.335266e-01 -1.882824e+00 -2.341311e+00 -1: 19 : -3.805782e-01 -1.794182e+00 -2.349835e+00 -1: 20 : -1.473435e+00 -2.014107e+00 -2.131543e+00 -1: 21 : -1.468751e+00 -1.995398e+00 -2.432606e+00 -1: 22 : 5.183253e-01 -1.618705e+00 -2.231401e+00 -1: 23 : -1.178945e+00 -1.925591e+00 -2.094005e+00 -1: 24 : -4.925162e-01 -2.034039e+00 -2.007017e+00 -1: 25 : 7.687722e-01 -1.832321e+00 -2.014938e+00 -1: 26 : -3.909144e-01 -1.958265e+00 -1.838261e+00 -1: 27 : -9.566960e-01 -2.116315e+00 -1.882866e+00 -1: 28 : -1.504592e+00 -1.967939e+00 -1.786390e+00 -1: 29 : -1.584746e+00 -1.986520e+00 -2.088347e+00 -1: 30 : 7.169726e-01 -1.573472e+00 -1.709084e+00 -1: 31 : -5.171665e-01 -1.965511e+00 -1.954707e+00 -1: 32 : -9.571309e-01 -2.094756e+00 -1.757891e+00 -1: 33 : -1.530293e+00 -1.958263e+00 -1.948082e+00 -1: 34 : -7.154673e-01 -2.065584e+00 -2.075371e+00 -1: 35 : 1.340190e-01 -1.944091e+00 -1.914026e+00 -1: 36 : 1.544947e+00 -1.929502e+00 -2.150595e+00 -1: 37 : 7.528057e-01 -2.257131e+00 -1.926496e+00 -1: 38 : 2.406347e-01 -2.208216e+00 -2.034885e+00 -1: 39 : -5.725307e-01 -1.883131e+00 -2.108053e+00 -1: 40 : 1.791558e+00 -1.536994e+00 -2.167133e+00 -1: 41 : 1.642266e-01 -1.959490e+00 -2.100835e+00 -1: 42 : 1.738289e+00 -1.946394e+00 -2.119461e+00 -1: 43 : 9.157931e-01 -2.115188e+00 -2.043411e+00 -1: 44 : 1.088121e-01 -2.110393e+00 -2.055440e+00 -1: 45 : -2.463773e-01 -2.352781e+00 -2.026276e+00 -1: 46 : -2.968376e-01 -2.384610e+00 -1.996209e+00 -1: 47 : -2.164531e-01 -2.447103e+00 -1.998921e+00 -1: 48 : -1.930564e-01 -2.436937e+00 -2.000106e+00 -1: 49 : -1.830719e-01 -2.442657e+00 -2.056543e+00 -1: 50 : -1.657240e-01 -2.444262e+00 -2.075977e+00 -1: 51 : -1.614439e-01 -2.459783e+00 -2.059981e+00 -1: 52 : -1.486868e-01 -2.461916e+00 -2.067977e+00 -1: 53 : -1.427199e-01 -2.468782e+00 -2.054369e+00 -1: 54 : -1.372803e-01 -2.467317e+00 -2.054323e+00 -1: 55 : -1.326133e-01 -2.470593e+00 -2.053199e+00 -1: 56 : -1.302194e-01 -2.473777e+00 -2.056859e+00 -1: 57 : -1.261704e-01 -2.478879e+00 -2.061419e+00 -1: 58 : -1.243679e-01 -2.484729e+00 -2.086884e+00 -1: 59 : -1.173265e-01 -2.494588e+00 -2.133612e+00 -1: 60 : -1.214529e-01 -2.494635e+00 -2.183348e+00 -1: 61 : -1.293582e-01 -2.506257e+00 -2.171958e+00 -1: 62 : -1.191051e-01 -2.497786e+00 -2.145566e+00 -1: 63 : -1.195273e-01 -2.507583e+00 -2.283516e+00 -1: 64 : -1.336055e-01 -2.507490e+00 -2.176662e+00 -1: 65 : -1.368918e-01 -2.529756e+00 -2.196912e+00 -1: 66 : -1.233890e-01 -2.436671e+00 -1.958676e+00 -1: 67 : -1.247224e-01 -2.504339e+00 -2.117309e+00 -1: 68 : -1.032085e-01 -2.471079e+00 -2.012799e+00 -1: 69 : -2.071139e-01 -2.406339e+00 -1.964724e+00 -1: 70 : -2.314971e-01 -2.482945e+00 -2.155415e+00 -1: 71 : -2.581455e-01 -2.333455e+00 -1.886001e+00 -1: 72 : -6.401938e-01 -2.226488e+00 -2.015915e+00 -1: 73 : -7.949377e-01 -2.196288e+00 -2.162808e+00 -1: 74 : -8.079978e-01 -2.362137e+00 -2.147486e+00 -1: 75 : -1.083655e+00 -1.982127e+00 -2.269919e+00 -1: 76 : 1.037179e+00 -1.306082e+00 -2.118258e+00 -1: 77 : -8.516058e-01 -2.005135e+00 -2.194561e+00 -1: 78 : 1.016745e+00 -2.144597e+00 -1.807433e+00 -1: 79 : 7.776245e-01 -1.778889e+00 -1.912730e+00 -1: 80 : -7.908624e-01 -1.996992e+00 -2.312429e+00 -1: 81 : 1.090484e+00 -2.140350e+00 -2.126710e+00 -1: 82 : 1.015684e+00 -2.173901e+00 -2.125421e+00 -1: 83 : 1.260068e-01 -2.163344e+00 -1.811512e+00 -1: 84 : -1.337411e-01 -2.389348e+00 -1.904007e+00 -1: 85 : -3.989461e-01 -2.244048e+00 -1.749086e+00 -1: 86 : -9.542197e-01 -2.211177e+00 -1.788534e+00 -1: 87 : -9.941038e-01 -1.815204e+00 -1.902731e+00 -1: 88 : 2.104662e+00 -1.513922e+00 -2.045570e+00 -1: 89 : 9.999876e-01 -2.050895e+00 -2.244490e+00 -1: 90 : -7.696630e-02 -1.947020e+00 -2.157029e+00 -1: 91 : -9.479131e-01 -2.263503e+00 -2.090311e+00 -1: 92 : -1.952076e+00 -1.847213e+00 -2.148435e+00 -1: 93 : 1.132581e-01 -2.016356e+00 -2.078692e+00 -1: 94 : 2.403807e-01 -2.336333e+00 -2.143608e+00 -1: 95 : 1.057027e+00 -1.977065e+00 -2.303994e+00 -1: 96 : 3.843040e-01 -2.226576e+00 -2.423552e+00 -1: 97 : 7.154019e-01 -1.956273e+00 -2.181569e+00 -1: 98 : 2.062936e-01 -1.297073e+00 -2.801933e+00 -1: 99 : -4.569919e-01 -6.026990e-01 -2.507457e+00 -1: passed -1: Test: Short sequence to squiggle with transformed parameterisation ...# Squiggle with transformed parameters -1: 0 : -7.100222e-02 3.490146e-01 8.680637e-01 -1: 1 : -7.592717e-01 3.310335e-01 1.590436e+00 -1: 2 : 6.517259e-01 1.979630e-01 4.520027e+00 -1: 3 : 7.911155e-01 1.406727e-01 6.470098e+00 -1: 4 : -4.636365e-02 9.927477e-02 8.278069e+00 -1: 5 : 3.253556e-01 1.217649e-01 8.172357e+00 -1: 6 : -2.154961e-01 9.928147e-02 8.437597e+00 -1: 7 : -3.571292e-02 1.245055e-01 7.711463e+00 -1: 8 : 1.599802e+00 1.513939e-01 7.581724e+00 -1: 9 : 8.314085e-01 8.612853e-02 1.163788e+01 -1: 10 : 6.323134e-01 1.063733e-01 9.631895e+00 -1: 11 : -6.508422e-01 1.362481e-01 1.075115e+01 -1: 12 : -5.089763e-01 1.259260e-01 8.554433e+00 -1: 13 : 8.102253e-01 1.183913e-01 1.021620e+01 -1: 14 : 8.833820e-02 1.194025e-01 8.367081e+00 -1: 15 : 1.071858e+00 1.738294e-01 9.407034e+00 -1: 16 : -2.662371e-01 9.949841e-02 1.047167e+01 -1: 17 : 2.526874e-01 1.055360e-01 1.018448e+01 -1: 18 : 9.335266e-01 1.521598e-01 1.039486e+01 -1: 19 : -3.805782e-01 1.662634e-01 1.048384e+01 -1: 20 : -1.473435e+00 1.334395e-01 8.427864e+00 -1: 21 : -1.468751e+00 1.359596e-01 1.138852e+01 -1: 22 : 5.183253e-01 1.981551e-01 9.312908e+00 -1: 23 : -1.178945e+00 1.457896e-01 8.117357e+00 -1: 24 : -4.925162e-01 1.308061e-01 7.441085e+00 -1: 25 : 7.687722e-01 1.600417e-01 7.500263e+00 -1: 26 : -3.909144e-01 1.411030e-01 6.285598e+00 -1: 27 : -9.566960e-01 1.204748e-01 6.572314e+00 -1: 28 : -1.504592e+00 1.397446e-01 5.967870e+00 -1: 29 : -1.584746e+00 1.371720e-01 8.071564e+00 -1: 30 : 7.169726e-01 2.073242e-01 5.523900e+00 -1: 31 : -5.171665e-01 1.400842e-01 7.061852e+00 -1: 32 : -9.571309e-01 1.231003e-01 5.800190e+00 -1: 33 : -1.530293e+00 1.411033e-01 7.015221e+00 -1: 34 : -7.154673e-01 1.267443e-01 7.967502e+00 -1: 35 : 1.340190e-01 1.431173e-01 6.780335e+00 -1: 36 : 1.544947e+00 1.452205e-01 8.589970e+00 -1: 37 : 7.528057e-01 1.046503e-01 6.865414e+00 -1: 38 : 2.406347e-01 1.098965e-01 7.651375e+00 -1: 39 : -5.725307e-01 1.521131e-01 8.232198e+00 -1: 40 : 1.791558e+00 2.150264e-01 8.733207e+00 -1: 41 : 1.642266e-01 1.409303e-01 8.172995e+00 -1: 42 : 1.738289e+00 1.427880e-01 8.326647e+00 -1: 43 : 9.157931e-01 1.206106e-01 7.716887e+00 -1: 44 : 1.088121e-01 1.211904e-01 7.810273e+00 -1: 45 : -2.463773e-01 9.510433e-02 7.585787e+00 -1: 46 : -2.968376e-01 9.212491e-02 7.361097e+00 -1: 47 : -2.164531e-01 8.654394e-02 7.381091e+00 -1: 48 : -1.930564e-01 8.742826e-02 7.389842e+00 -1: 49 : -1.830719e-01 8.692955e-02 7.818890e+00 -1: 50 : -1.657240e-01 8.679014e-02 7.972329e+00 -1: 51 : -1.614439e-01 8.545349e-02 7.845820e+00 -1: 52 : -1.486868e-01 8.527137e-02 7.908805e+00 -1: 53 : -1.427199e-01 8.468797e-02 7.801917e+00 -1: 54 : -1.372803e-01 8.481213e-02 7.801556e+00 -1: 55 : -1.326133e-01 8.453473e-02 7.792791e+00 -1: 56 : -1.302194e-01 8.426598e-02 7.821364e+00 -1: 57 : -1.261704e-01 8.383711e-02 7.857110e+00 -1: 58 : -1.243679e-01 8.334816e-02 8.059758e+00 -1: 59 : -1.173265e-01 8.253042e-02 8.445313e+00 -1: 60 : -1.214529e-01 8.252656e-02 8.875977e+00 -1: 61 : -1.293582e-01 8.157299e-02 8.775450e+00 -1: 62 : -1.191051e-01 8.226693e-02 8.546880e+00 -1: 63 : -1.195273e-01 8.146491e-02 9.811115e+00 -1: 64 : -1.336055e-01 8.147245e-02 8.816829e+00 -1: 65 : -1.368918e-01 7.967844e-02 8.997186e+00 -1: 66 : -1.233890e-01 8.745151e-02 7.089930e+00 -1: 67 : -1.247224e-01 8.172958e-02 8.308747e+00 -1: 68 : -1.032085e-01 8.449367e-02 7.484239e+00 -1: 69 : -2.071139e-01 9.014467e-02 7.132941e+00 -1: 70 : -2.314971e-01 8.349697e-02 8.631474e+00 -1: 71 : -2.581455e-01 9.696014e-02 6.592949e+00 -1: 72 : -6.401938e-01 1.079067e-01 7.507593e+00 -1: 73 : -7.949377e-01 1.112152e-01 8.695518e+00 -1: 74 : -8.079978e-01 9.421863e-02 8.563301e+00 -1: 75 : -1.083655e+00 1.377758e-01 9.678620e+00 -1: 76 : 1.037179e+00 2.708792e-01 8.316633e+00 -1: 77 : -8.516058e-01 1.346421e-01 8.976064e+00 -1: 78 : 1.016745e+00 1.171152e-01 6.094779e+00 -1: 79 : 7.776245e-01 1.688257e-01 6.771546e+00 -1: 80 : -7.908624e-01 1.357430e-01 1.009893e+01 -1: 81 : 1.090484e+00 1.176136e-01 8.387229e+00 -1: 82 : 1.015684e+00 1.137331e-01 8.376424e+00 -1: 83 : 1.260068e-01 1.149402e-01 6.119696e+00 -1: 84 : -1.337411e-01 9.168947e-02 6.712739e+00 -1: 85 : -3.989461e-01 1.060285e-01 5.749343e+00 -1: 86 : -9.542197e-01 1.095716e-01 5.980679e+00 -1: 87 : -9.941038e-01 1.628047e-01 6.704179e+00 -1: 88 : 2.104662e+00 2.200452e-01 7.733565e+00 -1: 89 : 9.999876e-01 1.286197e-01 9.435606e+00 -1: 90 : -7.696630e-02 1.426987e-01 8.645411e+00 -1: 91 : -9.479131e-01 1.039856e-01 8.087430e+00 -1: 92 : -1.952076e+00 1.576759e-01 8.571430e+00 -1: 93 : 1.132581e-01 1.331397e-01 7.994008e+00 -1: 94 : 2.403807e-01 9.668154e-02 8.530156e+00 -1: 95 : 1.057027e+00 1.384751e-01 1.001410e+01 -1: 96 : 3.843040e-01 1.078972e-01 1.128587e+01 -1: 97 : 7.154019e-01 1.413844e-01 8.860198e+00 -1: 98 : 2.062936e-01 2.733308e-01 1.647646e+01 -1: 99 : -4.569919e-01 5.473324e-01 1.227368e+01 -1: passed -1: Suite: Miscellaneous utility functions -1: Test: Median of odd length array ...passed -1: Test: Median of even length array ...passed -1: -1: Run Summary: Type Total Ran Passed Failed Inactive -1: suites 11 11 n/a 0 0 -1: tests 71 71 71 0 0 -1: asserts 506 506 506 0 n/a -1: -1: Elapsed time = 12.531 seconds 9: 34969 -1.389451 2720 A -1.030503 0.133576 10.268675 9: 34970 -1.375961 2720 A -1.030503 0.133576 10.268675 9: 34971 -1.227573 2720 A -1.030503 0.133576 10.268675 @@ -377678,7 +377713,6 @@ 9: 37585 -1.268043 2932 A -0.755657 0.164916 6.868157 9: 37586 -1.227573 2932 A -0.755657 0.164916 6.868157 9: 37587 -1.281532 2932 A -0.755657 0.164916 6.868157 -17/19 Test #1: unittest ......................... Passed 19.39 sec 9: 37588 -1.470390 2932 A -0.755657 0.164916 6.868157 9: 37589 -1.065695 2932 A -0.755657 0.164916 6.868157 9: 37590 -1.456900 2932 A -0.755657 0.164916 6.868157 @@ -404486,21 +404520,23 @@ 9: 64392 nan -1 N nan nan nan 9: 64393 nan -1 N nan nan nan 9: 64394 nan -1 N nan nan nan -18/19 Test #9: test_mappy ....................... Passed 19.50 sec +18/19 Test #9: test_mappy ....................... Passed 13.39 sec 7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG +7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } +7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } 7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 20.94 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 13.51 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 20.97 sec +Total Test time (real) = 13.52 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' - rm -fr -- /tmp/dh-xdg-rundir-AJIi18x6 - cd build_sse3 && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + rm -fr -- /tmp/dh-xdg-rundir-Xv1L4TGD + cd build_sse3 && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_sse3/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_sse3/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_sse3 @@ -404660,134 +404696,6 @@ 1: Test: Simple convolution, antisymmetric filter length 3 ...passed 1: Test: Scrappie convolution, antisymmetric filter length 3 ...passed 1: Suite: Test decoding -16: Usage: event_table [OPTION...] fast5 [fast5 ...] -16: Scrappie basecaller -- basecall via events -16: -16: --licence, --license Print licensing information -16: -o, --output=filename Write to file rather than stdout -16: --segmentation=chunk:percentile -16: Chunk size and percentile for variance based -16: segmentation -16: -t, --trim=start:end Number of events to trim, as start:end -16: -?, --help Give this help list -16: --usage Give a short usage message -16: -V, --version Print program version -16: -16: Mandatory or optional arguments to long options are also mandatory or optional -16: for any corresponding short options. -16: -16: Report bugs to . - 1/19 Test #16: test_help_event_table ............ Passed 0.22 sec -14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies -14: Limited Research Algorithms group. -14: -14: Basic usage: -14: * scrappie events Base call from event based data. -14: * scrappie help Print general help or help about specific Scrappie command. -14: * scrappie licence Print licensing information. -14: * scrappie raw Base call directly from raw signal. -14: * scrappie version Print version information. -14: * scrappie squiggle Create approximate squiggle for sequence -14: * scrappie mappy Map signal to approximate squiggle -14: * scrappie seqmappy Map signal to sequence via basecall posteriors -14: * scrappie event_table Output table of events for read -14: -14: This project began life as a proof (bet) that a base caller could be written -14: in a low level language in under 8 hours. Some of the poor and just plain odd -14: design decisions, along with the lack of documentation, are a result of its -14: inception. In keeping with ONT's fish naming policy, the project was originally -14: called Crappie. -14: -14: Scrappie's purpose is to demonstrate the next generation of base calling and, as -14: such, may change drastically between releases and breaks backwards -14: compatibility. Newer versions may drop support of current features or change their -14: behaviour. -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. - 2/19 Test #13: test_licence ..................... Passed 0.25 sec - 3/19 Test #14: test_help ........................ Passed 0.25 sec -15: Usage: events [OPTION...] fast5 [fast5 ...] -15: Scrappie basecaller -- basecall via events -15: -15: -#, --threads=nparallel Number of reads to call in parallel -15: --dump=filename Dump annotated events to HDF5 file -15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths -15: -f, --format=format Format to output reads (FASTA or SAM) -15: --hdf5-chunk=size Chunk size for HDF5 output -15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -15: 1: quickest, 9: best) -15: --licence, --license Print licensing information -15: --local=penalty Penalty for local basecalling -15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -15: -m, --min_prob=probability Minimum bound on probability of match -15: -o, --output=filename Write to file rather than stdout -15: -p, --prefix=string Prefix to append to name of each read -15: --segmentation=chunk:percentile -15: Chunk size and percentile for variance based -15: segmentation -15: --slip, --no-slip Use slipping -15: -s, --skip=penalty Penalty for skipping a base -15: --temperature1=factor Temperature for softmax weights -15: --temperature2=factor Temperature for softmax bias -15: -t, --trim=start:end Number of events to trim, as start:end -15: --uuid, --no-uuid Output UUID -15: -y, --stay=penalty Penalty for staying -15: -?, --help Give this help list -15: --usage Give a short usage message -15: -V, --version Print program version -15: -15: Mandatory or optional arguments to long options are also mandatory or optional -15: for any corresponding short options. -15: -15: Report bugs to . - 4/19 Test #15: test_help_events ................. Passed 0.26 sec -17: Usage: raw [OPTION...] fast5 [fast5 ...] -17: Scrappie basecaller -- basecall from raw signal -17: -17: -#, --threads=nparallel Number of reads to call in parallel -17: -f, --format=format Format to output reads (FASTA or SAM) -17: --hdf5-chunk=size Chunk size for HDF5 output -17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -17: 1: quickest, 9: best) -17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from -17: "nochange" or "mean" (default). Not implemented -17: for CRF. -17: --licence, --license Print licensing information -17: --local=penalty Penalty for local basecalling -17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", -17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" -17: -m, --min_prob=probability Minimum bound on probability of match -17: -o, --output=filename Write to file rather than stdout -17: -p, --prefix=string Prefix to append to name of each read -17: --segmentation=chunk:percentile -17: Chunk size and percentile for variance based -17: segmentation -17: --slip, --no-slip Use slipping -17: -s, --skip=penalty Penalty for skipping a base -17: --temperature1=factor Temperature for softmax weights -17: --temperature2=factor Temperature for softmax bias -17: -t, --trim=start:end Number of samples to trim, as start:end -17: --uuid, --no-uuid Output UUID -17: -y, --stay=penalty Penalty for staying -17: -?, --help Give this help list -17: --usage Give a short usage message -17: -V, --version Print program version -17: -17: Mandatory or optional arguments to long options are also mandatory or optional -17: for any corresponding short options. -17: -17: Report bugs to . - 5/19 Test #17: test_help_raw .................... Passed 0.28 sec 8: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 8: #event start mean stdv dwell 8: 0 0 74.501198 0.733543 4 @@ -406802,25 +406710,6 @@ 8: 2009 10332 73.112114 0.789952 4 8: 2010 10336 70.503723 1.529814 3 8: 2011 10339 72.911469 1.321214 3 -18: Usage: squiggle [OPTION...] fasta [fasta ...] -18: Scrappie squiggler -18: -18: --licence, --license Print licensing information -18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -18: -m, --model=name Squiggle model to use: "squiggle_r94", -18: "squiggle_r94_rna", "squiggle_r10" -18: -o, --output=filename Write to file rather than stdout -18: -p, --prefix=string Prefix to append to name of each read -18: --rescale, --no-rescale Rescale network output -18: -?, --help Give this help list -18: --usage Give a short usage message -18: -V, --version Print program version -18: -18: Mandatory or optional arguments to long options are also mandatory or optional -18: for any corresponding short options. -18: -18: Report bugs to . - 6/19 Test #18: test_help_squiggle ............... Passed 0.28 sec 8: 2012 10342 71.584122 0.930705 4 8: 2013 10346 76.825600 0.725848 5 8: 2014 10351 91.833885 2.938663 6 @@ -408864,8 +408753,6 @@ 8: 4052 20849 100.507935 1.739646 3 8: 4053 20852 99.344429 1.920032 13 8: 4054 20865 101.742676 0.681795 3 -19: scrappie 1.4.0- - 7/19 Test #19: test_version ..................... Passed 0.29 sec 8: 4055 20868 99.670082 1.286195 14 8: 4056 20882 97.513695 1.452705 6 8: 4057 20888 78.418411 1.090173 5 @@ -417208,5148 +417095,156 @@ 8: 12394 64075 54.637299 0.944376 3 8: 12395 64078 52.637016 1.520129 5 8: 12396 64083 61.066772 1.247263 7 - 8/19 Test #8: test_event_table ................. Passed 0.68 sec -12: #one -12: pos base current sd dwell -12: 0 T 0.273674 0.499834 0.755774 -12: 1 G -0.827003 0.326051 0.991839 -12: 2 T -0.104041 0.268039 1.205425 -12: 3 T -0.428139 0.173708 2.316947 -12: 4 G -0.597921 0.132543 4.125653 -12: 5 G 0.122584 0.172515 5.672003 -12: 6 C -0.753471 0.140175 6.365880 -12: 7 A -1.350900 0.119218 8.507021 -12: 8 G -0.993099 0.217650 7.099245 -12: 9 C 1.013569 0.170988 8.414597 -12: 10 A 0.412764 0.191649 7.962251 -12: 11 G 0.250480 0.134047 7.393412 -12: 12 A 0.458163 0.117234 6.707494 -12: 13 T 0.178411 0.124805 7.581464 -12: 14 G -0.025012 0.110542 7.590659 -12: 15 C 0.044162 0.105856 7.092888 -12: 16 T 0.061498 0.127763 7.264974 -12: 17 T -0.513525 0.171520 7.296825 -12: 18 C 1.112436 0.140592 8.244479 -12: 19 C 1.066347 0.100407 8.955942 -12: 20 C 1.584310 0.141204 9.109225 -12: 21 A 0.573389 0.187423 7.842996 -12: 22 T 1.256531 0.133714 7.690176 -12: 23 T 1.229335 0.102461 8.701999 -12: 24 T 1.343236 0.114901 7.983737 -12: 25 A 1.490604 0.126771 8.707528 -12: 26 T 0.577702 0.190845 7.439801 -12: 27 T 0.243798 0.109822 8.525366 -12: 28 T 0.225924 0.108937 7.258288 -12: 29 T -0.151422 0.116616 6.949590 -12: 30 G -0.461237 0.123034 7.370571 -12: 31 C -0.920595 0.167978 6.913722 -12: 32 C 0.697490 0.116648 6.932203 -12: 33 A 1.250611 0.103988 7.395932 -12: 34 G 1.408610 0.109263 7.368258 -12: 35 G 0.978506 0.138890 7.284063 -12: 36 T 0.002591 0.147569 7.155144 -12: 37 T 0.529287 0.113453 7.755282 -12: 38 T 0.881991 0.129039 7.141699 -12: 39 T 0.456806 0.122161 6.772672 -12: 40 C 0.352499 0.109680 7.501411 -12: 41 T 0.955144 0.124407 7.369837 -12: 42 T 0.618668 0.140725 6.997858 -12: 43 C 1.122972 0.127074 7.031722 -12: 44 C 1.128262 0.136292 7.779564 -12: 45 T 0.313741 0.216311 7.285414 -12: 46 C 1.673615 0.180580 7.869911 -12: 47 T 0.773369 0.199797 6.926927 -12: 48 T 1.111612 0.152472 7.700045 -12: 49 A 1.527846 0.142648 7.658555 -12: 50 T 0.494435 0.140173 7.637252 -12: 51 A 0.711864 0.125759 8.584886 -12: 52 C 0.113872 0.178964 6.512078 -12: 53 T -0.069664 0.137278 7.772210 -12: 54 C -0.716845 0.136451 6.106913 -12: 55 T -0.764959 0.100291 6.854393 -12: 56 A -0.399828 0.131407 5.484698 -12: 57 C -1.077278 0.135355 7.093230 -12: 58 A -0.943716 0.173027 7.178404 -12: 59 A 1.085228 0.160291 6.531012 -12: 60 G 0.436126 0.116139 7.309725 -12: 61 G 0.469768 0.105588 7.172529 -12: 62 A -0.079028 0.098733 7.621417 -12: 63 T -0.255751 0.111138 7.782254 -12: 64 C -0.248174 0.106014 7.672738 -12: 65 T 0.126377 0.120747 7.710305 -12: 66 T 1.614102 0.189180 8.067512 -12: 67 T 0.066818 0.297728 7.821163 -12: 68 C -0.893164 0.220529 9.082178 -12: 69 C 1.113156 0.139759 10.286945 -12: 70 T 0.880943 0.115717 8.949919 -12: 71 G 0.839317 0.120004 7.967424 -12: 72 A 0.758226 0.138797 8.128489 -12: 73 T -0.152786 0.146068 7.122806 -12: 74 C 0.268391 0.117182 8.476938 -12: 75 C 0.018469 0.182038 7.426908 -12: 76 T -0.399575 0.119628 7.506029 -12: 77 C -0.563992 0.137484 6.572974 -12: 78 T 0.819372 0.148341 6.119859 -12: 79 A 2.199081 0.183366 7.992210 -12: 80 G 1.008695 0.267460 7.051845 -12: 81 G 0.637207 0.145521 7.782193 -12: 82 C -0.348380 0.149592 8.496963 -12: 83 T 0.586681 0.135851 9.006288 -12: 84 G 0.503543 0.141529 7.541368 -12: 85 T -0.393491 0.150854 6.904460 -12: 86 A -1.075799 0.139004 7.768390 -12: 87 T -0.964355 0.229861 6.492065 -12: 88 C 1.194210 0.173337 8.878307 -12: 89 A 0.668653 0.194576 7.485297 -12: 90 G 0.456038 0.118715 8.211016 -12: 91 A 0.079889 0.108657 7.335958 -12: 92 T -0.393087 0.100731 7.503078 -12: 93 G -0.323256 0.097249 8.073540 -12: 94 C -0.200923 0.106431 7.942925 -12: 95 C -0.092830 0.106965 7.846553 -12: 96 C 0.280537 0.128783 9.250873 -12: 97 C 1.378857 0.166162 9.963839 -12: 98 C 0.307086 0.183868 9.047989 -12: 99 C 1.144177 0.118574 8.793784 -12: 100 C 1.383475 0.112529 9.083367 -12: 101 T 1.753331 0.124353 8.428049 -12: 102 G 1.968511 0.137366 10.298707 -12: 103 T 1.033458 0.239255 7.332140 -12: 104 T 0.506991 0.127580 9.154009 -12: 105 T 0.207010 0.128645 8.800764 -12: 106 T -0.708090 0.140997 7.025325 -12: 107 G -0.697496 0.137882 7.923243 -12: 108 C 0.462083 0.130179 7.264440 -12: 109 C 0.234052 0.108420 7.428887 -12: 110 A 1.057662 0.115072 8.531406 -12: 111 A 0.901951 0.133741 8.100545 -12: 112 C -0.290594 0.176260 8.511910 -12: 113 C -0.984401 0.161348 8.931733 -12: 114 T 0.451360 0.153007 8.667199 -12: 115 T 0.032067 0.127939 8.286752 -12: 116 A 1.115080 0.142716 8.625702 -12: 117 G 0.464987 0.115707 7.247863 -12: 118 C -0.050047 0.103996 6.866345 -12: 119 A 0.353787 0.140461 7.754554 -12: 120 C -0.187451 0.171386 7.239402 -12: 121 C 0.831581 0.134122 8.297323 -12: 122 C 0.209593 0.149639 8.195488 -12: 123 T 0.757033 0.148656 8.708257 -12: 124 G 1.777828 0.144726 7.959224 -12: 125 T 1.468117 0.131804 9.134960 -12: 126 G 0.189170 0.257667 7.039240 -12: 127 C -0.811868 0.230644 9.109518 -12: 128 T 0.945595 0.149728 7.732733 -12: 129 T 1.474979 0.139072 7.399189 -12: 130 A 0.805139 0.121541 7.252198 -12: 131 A 0.995888 0.158593 7.199490 -12: 132 T -0.124817 0.186475 8.062272 -12: 133 T 0.492304 0.140067 9.180777 -12: 134 C 0.177903 0.131961 7.360587 -12: 135 T -0.426143 0.148755 7.260666 -12: 136 G 1.674326 0.215375 6.540966 -12: 137 T 0.066639 0.275680 6.270622 -12: 138 C -0.731496 0.189001 7.334821 -12: 139 A 1.176365 0.175965 7.069396 -12: 140 T 0.349698 0.180990 7.026996 -12: 141 A 1.088653 0.121130 7.151761 -12: 142 A 0.642430 0.109925 7.719660 -12: 143 T 0.710488 0.117924 8.804646 -12: 144 A -0.068179 0.180409 8.006503 -12: 145 T -0.766603 0.150590 9.184913 -12: 146 T 0.388911 0.122124 8.341138 -12: 147 T 0.448692 0.107199 8.969172 -12: 148 A 1.260516 0.121337 8.179259 -12: 149 G 0.690860 0.131097 8.578660 -12: 150 C -0.033356 0.119710 8.996714 -12: 151 C 0.397997 0.110650 8.831608 -12: 152 T 0.260185 0.129188 7.858810 -12: 153 T -0.280449 0.119814 7.750637 -12: 154 C -0.470217 0.115889 7.681829 -12: 155 T 0.575082 0.146949 6.291042 -12: 156 C 1.799146 0.172314 7.486810 -12: 157 A 0.844886 0.176439 8.093428 -12: 158 G 1.448469 0.152054 9.029420 -12: 159 C 0.316506 0.223429 8.042208 -12: 160 T -0.922013 0.196240 9.864151 -12: 161 A 1.144369 0.150980 9.094522 -12: 162 T 1.147686 0.124510 8.017085 -12: 163 G 0.457062 0.130558 7.782852 -12: 164 G 0.494581 0.148596 8.240107 -12: 165 T -0.594848 0.167616 8.140071 -12: 166 T 0.793858 0.180858 9.434459 -12: 167 A -0.164905 0.171027 9.836936 -12: 168 C 0.701559 0.114116 9.122063 -12: 169 G 0.902073 0.114918 8.642534 -12: 170 T 1.277069 0.141490 7.743823 -12: 171 G 0.560736 0.182780 7.193562 -12: 172 T 1.029594 0.168157 7.147410 -12: 173 T 0.105893 0.191027 6.282142 -12: 174 T 0.873383 0.123613 7.713478 -12: 175 A 1.063095 0.107234 7.955980 -12: 176 T 1.048032 0.126394 7.948834 -12: 177 G 0.535373 0.129958 7.586320 -12: 178 T 0.134812 0.110879 7.299783 -12: 179 T 0.189506 0.114571 7.288369 -12: 180 T 0.864382 0.172411 7.733332 -12: 181 C -0.298826 0.195706 8.242532 -12: 182 C -0.983336 0.174232 9.401270 -12: 183 C 0.708725 0.177943 8.222429 -12: 184 T 1.586343 0.126727 8.987484 -12: 185 G 1.506788 0.137292 7.907163 -12: 186 A 0.915314 0.150236 8.250910 -12: 187 C -0.279722 0.236529 7.568242 -12: 188 T -1.213771 0.150381 9.776559 -12: 189 T -0.716519 0.246496 7.596628 -12: 190 T 1.720536 0.190907 7.279413 -12: 191 A 1.939440 0.153594 7.412075 -12: 192 G 0.806915 0.230256 6.458900 -12: 193 A 0.423449 0.153774 7.131793 -12: 194 T -0.687958 0.214838 6.478340 -12: 195 T -1.101607 0.130379 7.783386 -12: 196 G -0.723440 0.181976 6.310997 -12: 197 T 1.078309 0.135926 6.798953 -12: 198 G 1.098367 0.140556 7.279448 -12: 199 A 0.487809 0.160846 6.780677 -12: 200 G 0.337208 0.103093 7.082460 -12: 201 T 0.124310 0.120462 7.032188 -12: 202 T -0.740401 0.204070 6.715729 -12: 203 C -1.457625 0.156425 7.949944 -12: 204 T -0.979993 0.145497 7.157225 -12: 205 T -0.153786 0.234542 7.304358 -12: 206 G 1.747770 0.185290 7.164910 -12: 207 A 0.923244 0.150726 8.420387 -12: 208 A -0.219439 0.185891 7.145610 -12: 209 A 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-12: 1845 A 0.374534 0.220830 6.730651 -12: 1846 C -0.223256 0.139159 8.219902 -12: 1847 T -0.688077 0.137578 8.404921 -12: 1848 T -0.677189 0.131083 7.773622 -12: 1849 G -0.556521 0.128761 7.914368 -12: 1850 C -0.459951 0.188310 6.313677 -12: 1851 A 1.183637 0.153578 8.357196 -12: 1852 G 0.654888 0.123904 7.085598 -12: 1853 A 0.768162 0.146935 6.988475 -12: 1854 G -0.184429 0.140009 7.177394 -12: 1855 T -0.086158 0.111957 8.157167 -12: 1856 C 0.531198 0.119074 8.043587 -12: 1857 T 0.892525 0.127644 7.050701 -12: 1858 C 0.234613 0.178366 6.529207 -12: 1859 T -0.684699 0.181134 7.341182 -12: 1860 T 1.717872 0.197603 7.323440 -12: 1861 T 0.773959 0.257927 7.229456 -12: 1862 G -0.703910 0.163862 8.732985 -12: 1863 G -1.219425 0.125245 8.548782 -12: 1864 T -1.062588 0.129724 7.979484 -12: 1865 A -0.951476 0.120366 8.323326 -12: 1866 G -1.082666 0.119798 8.942129 -12: 1867 A -1.147270 0.168284 7.049138 -12: 1868 A 0.120409 0.168833 8.835416 -12: 1869 G -0.489656 0.158197 9.002485 -12: 1870 A 0.279384 0.133915 8.239852 -12: 1871 G -0.262262 0.119566 7.030302 -12: 1872 T -0.500275 0.114955 7.192374 -12: 1873 A -0.841461 0.132286 6.827838 -12: 1874 T -0.074053 0.142972 7.414171 -12: 1875 C 0.892720 0.149679 7.753975 -12: 1876 C 0.356182 0.147815 8.475304 -12: 1877 A 0.317176 0.106951 9.949014 -12: 1878 C 0.315309 0.133397 8.992968 -12: 1879 T -0.535658 0.133388 8.666631 -12: 1880 G -0.610055 0.105655 8.928836 -12: 1881 C -0.520772 0.128235 7.045292 -12: 1882 C 0.506064 0.136586 6.301645 -12: 1883 A 1.590023 0.155081 8.310630 -12: 1884 A 0.747346 0.274811 8.010700 -12: 1885 G -0.634829 0.143869 9.413188 -12: 1886 C -1.100895 0.129304 9.103161 -12: 1887 T -1.120144 0.152105 9.542959 -12: 1888 A 0.615355 0.163648 9.139679 -12: 1889 G 0.543640 0.138828 7.652001 -12: 1890 G -0.468226 0.137546 7.557824 -12: 1891 G -0.192185 0.116225 8.552762 -12: 1892 C 0.149085 0.149862 7.012866 -12: 1893 C -0.565017 0.187764 7.907248 -12: 1894 A -1.095203 0.124040 8.735223 -12: 1895 C -0.626542 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7.299687 -12: 2552 C -1.420619 0.184846 7.187764 -12: 2553 T 0.516770 0.172238 7.991004 -12: 2554 T 1.209236 0.132782 8.721268 -12: 2555 C 1.472676 0.122889 8.505735 -12: 2556 A 1.316731 0.137611 7.890669 -12: 2557 T -0.069831 0.213390 6.807758 -12: 2558 T -0.617375 0.194515 7.804194 -12: 2559 T 1.544968 0.190930 7.108366 -12: 2560 T 0.668908 0.243240 7.406156 -12: 2561 A -0.883512 0.149727 8.009659 -12: 2562 A -1.634685 0.122577 8.049137 -12: 2563 T -1.398357 0.110037 8.988862 -12: 2564 A -0.786857 0.100302 8.384510 -12: 2565 G -0.620314 0.109937 8.754931 -12: 2566 A -1.176952 0.137542 8.881434 -12: 2567 A -0.128371 0.133560 8.570903 -12: 2568 A -0.713346 0.138379 8.649867 -12: 2569 G 0.599217 0.158987 8.227661 -12: 2570 G -0.482809 0.249785 7.666263 -12: 2571 T -1.283436 0.205650 10.129151 -12: 2572 A 0.217471 0.195993 10.924161 -12: 2573 T -0.527437 0.183608 10.333318 -12: 2574 G 0.289440 0.216070 11.379429 -12: 2575 A -0.470523 0.228475 10.162048 -12: 2576 C -1.309896 0.346120 11.664120 -12: 2577 A 0.710910 0.445684 9.001451 -12: 2578 C -0.044387 0.550503 7.497941 -12: #two -12: pos base current sd dwell -12: 0 C 0.683936 0.292595 0.787175 -12: 1 T 0.285399 0.223970 1.363220 -12: 2 T 0.233159 0.229233 1.925318 -12: 3 T -0.284285 0.202461 3.632945 -12: 4 T 1.513357 0.179336 6.751537 -12: 5 C 0.495119 0.192543 6.420651 -12: 6 C 0.220424 0.123044 7.956814 -12: 7 A -0.270081 0.148077 7.616370 -12: 8 T 0.737105 0.154406 7.992534 -12: 9 G -0.257618 0.139907 7.938873 -12: 10 C 0.238270 0.144361 7.577223 -12: 11 A -0.565925 0.132718 7.805387 -12: 12 C 0.186974 0.157118 8.225278 -12: 13 A -0.566944 0.119921 8.531586 -12: 14 C -0.681718 0.155401 7.449421 -12: 15 A 1.114625 0.177478 8.406658 -12: 16 C 0.209275 0.178806 8.876794 -12: 17 A 0.182029 0.144124 7.857810 -12: 18 G -0.634468 0.142029 7.148503 -12: 19 T -0.808495 0.109849 7.214585 -12: 20 G -0.660106 0.130614 7.163760 -12: 21 C 0.377924 0.144487 6.444206 -12: 22 A 1.238849 0.168886 6.598902 -12: 23 A 0.372003 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-0.557004 0.150871 8.121720 -12: 575 T 0.531261 0.133317 7.705036 -12: 576 T 1.240177 0.109625 8.080192 -12: 577 A 1.233392 0.108421 8.062259 -12: 578 G 0.709108 0.106319 7.812791 -12: 579 C 0.410596 0.087618 8.145637 -12: 580 T 0.457344 0.099777 8.049680 -12: 581 T 0.290740 0.099987 8.435909 -12: 582 T 1.302000 0.130621 7.744569 -12: 583 T 0.773263 0.118159 7.705857 -12: 584 T 1.475547 0.143461 8.661454 -12: 585 C 0.430492 0.170265 7.779425 -12: 586 T 0.839619 0.139641 8.278427 -12: 587 C -0.200776 0.157649 7.510916 -12: 588 T -0.546136 0.182741 8.881922 -12: 589 G 1.832598 0.164956 8.361652 -12: 590 T 1.566273 0.121332 9.116512 -12: 591 A 0.300091 0.186477 8.080286 -12: 592 A 0.461733 0.138491 10.743159 -12: 593 T -0.402121 0.197353 8.996448 -12: 594 T -0.894658 0.115531 9.138332 -12: 595 G -0.542551 0.151287 7.720534 -12: 596 T 1.008739 0.157621 8.185129 -12: 597 A 0.505789 0.128562 7.612628 -12: 598 A 0.966798 0.145344 8.932740 -12: 599 G 0.022977 0.212905 8.173976 -12: 600 T -0.532864 0.153095 10.262908 -12: 601 C 0.737053 0.259955 12.031479 -12: 602 T -0.036625 0.303160 10.349803 -12: 603 G -0.572062 0.335164 12.230330 -12: 604 C 0.561030 0.467363 9.792212 -12: 605 T -0.235200 0.581865 6.671800 - 9/19 Test #12: test_squiggle_r10 ................ Passed 1.80 sec + 1/19 Test #8: test_event_table ................. Passed 0.70 sec +18: Usage: squiggle [OPTION...] fasta [fasta ...] +18: Scrappie squiggler +18: +18: --licence, --license Print licensing information +18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +18: -m, --model=name Squiggle model to use: "squiggle_r94", +18: "squiggle_r94_rna", "squiggle_r10" +18: -o, --output=filename Write to file rather than stdout +18: -p, --prefix=string Prefix to append to name of each read +18: --rescale, --no-rescale Rescale network output +18: -?, --help Give this help list +18: --usage Give a short usage message +18: -V, --version Print program version +18: +18: Mandatory or optional arguments to long options are also mandatory or optional +18: for any corresponding short options. +18: +18: Report bugs to . +19: scrappie 1.4.0- +15: Usage: events [OPTION...] fast5 [fast5 ...] +15: Scrappie basecaller -- basecall via events +15: +15: -#, --threads=nparallel Number of reads to call in parallel +15: --dump=filename Dump annotated events to HDF5 file +15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths +15: -f, --format=format Format to output reads (FASTA or SAM) +15: --hdf5-chunk=size Chunk size for HDF5 output +15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +15: 1: quickest, 9: best) +15: --licence, --license Print licensing information +15: --local=penalty Penalty for local basecalling +15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +15: -m, --min_prob=probability Minimum bound on probability of match +15: -o, --output=filename Write to file rather than stdout +15: -p, --prefix=string Prefix to append to name of each read +15: --segmentation=chunk:percentile +15: Chunk size and percentile for variance based +15: segmentation +15: --slip, --no-slip Use slipping +15: -s, --skip=penalty Penalty for skipping a base +15: --temperature1=factor Temperature for softmax weights +15: --temperature2=factor Temperature for softmax bias +15: -t, --trim=start:end Number of events to trim, as start:end +15: --uuid, --no-uuid Output UUID +15: -y, --stay=penalty Penalty for staying +15: -?, --help Give this help list +15: --usage Give a short usage message +15: -V, --version Print program version +15: +15: Mandatory or optional arguments to long options are also mandatory or optional +15: for any corresponding short options. +15: +15: Report bugs to . +17: Usage: raw [OPTION...] fast5 [fast5 ...] +17: Scrappie basecaller -- basecall from raw signal +17: +17: -#, --threads=nparallel Number of reads to call in parallel +17: -f, --format=format Format to output reads (FASTA or SAM) +17: --hdf5-chunk=size Chunk size for HDF5 output +17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +17: 1: quickest, 9: best) +17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from +17: "nochange" or "mean" (default). Not implemented +17: for CRF. +17: --licence, --license Print licensing information +17: --local=penalty Penalty for local basecalling +17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", +17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" +17: -m, --min_prob=probability Minimum bound on probability of match +17: -o, --output=filename Write to file rather than stdout +17: -p, --prefix=string Prefix to append to name of each read +17: --segmentation=chunk:percentile +17: Chunk size and percentile for variance based +17: segmentation +17: --slip, --no-slip Use slipping +17: -s, --skip=penalty Penalty for skipping a base +17: --temperature1=factor Temperature for softmax weights +17: --temperature2=factor Temperature for softmax bias +17: -t, --trim=start:end Number of samples to trim, as start:end +17: --uuid, --no-uuid Output UUID +17: -y, --stay=penalty Penalty for staying +17: -?, --help Give this help list +17: --usage Give a short usage message +17: -V, --version Print program version +17: +17: Mandatory or optional arguments to long options are also mandatory or optional +17: for any corresponding short options. +17: +17: Report bugs to . +16: Usage: event_table [OPTION...] fast5 [fast5 ...] +16: Scrappie basecaller -- basecall via events +16: +16: --licence, --license Print licensing information +16: -o, --output=filename Write to file rather than stdout +16: --segmentation=chunk:percentile +16: Chunk size and percentile for variance based +16: segmentation +16: -t, --trim=start:end Number of events to trim, as start:end +16: -?, --help Give this help list +16: --usage Give a short usage message +16: -V, --version Print program version +16: +16: Mandatory or optional arguments to long options are also mandatory or optional +16: for any corresponding short options. +16: +16: Report bugs to . +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. +14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies +14: Limited Research Algorithms group. +14: +14: Basic usage: +14: * scrappie events Base call from event based data. +14: * scrappie help Print general help or help about specific Scrappie command. +14: * scrappie licence Print licensing information. +14: * scrappie raw Base call directly from raw signal. +14: * scrappie version Print version information. +14: * scrappie squiggle Create approximate squiggle for sequence +14: * scrappie mappy Map signal to approximate squiggle +14: * scrappie seqmappy Map signal to sequence via basecall posteriors +14: * scrappie event_table Output table of events for read +14: +14: This project began life as a proof (bet) that a base caller could be written +14: in a low level language in under 8 hours. Some of the poor and just plain odd +14: design decisions, along with the lack of documentation, are a result of its +14: inception. In keeping with ONT's fish naming policy, the project was originally +14: called Crappie. +14: +14: Scrappie's purpose is to demonstrate the next generation of base calling and, as +14: such, may change drastically between releases and breaks backwards +14: compatibility. Newer versions may drop support of current features or change their +14: behaviour. + 2/19 Test #13: test_licence ..................... Passed 0.98 sec + 3/19 Test #14: test_help ........................ Passed 0.95 sec + 4/19 Test #15: test_help_events ................. Passed 0.95 sec + 5/19 Test #16: test_help_event_table ............ Passed 0.94 sec + 6/19 Test #17: test_help_raw .................... Passed 0.91 sec + 7/19 Test #18: test_help_squiggle ............... Passed 0.85 sec + 8/19 Test #19: test_version ..................... Passed 0.85 sec 11: #one 11: pos base current sd dwell 11: 0 T -0.010010 0.502173 1.176593 @@ -425849,7 +420744,4500 @@ 11: 913 C 0.255411 0.100457 7.447389 11: 914 A 0.078750 0.085782 8.936720 11: 915 C 0.690872 0.107165 7.216995 -1: Test: Decoding of original and vectorised posterior same ...passed +12: #one +12: pos base current sd dwell +12: 0 T 0.273674 0.499834 0.755774 +12: 1 G -0.827003 0.326051 0.991839 +12: 2 T -0.104041 0.268039 1.205425 +12: 3 T -0.428139 0.173708 2.316947 +12: 4 G -0.597921 0.132543 4.125653 +12: 5 G 0.122584 0.172515 5.672003 +12: 6 C -0.753471 0.140175 6.365880 +12: 7 A -1.350900 0.119218 8.507021 +12: 8 G -0.993099 0.217650 7.099245 +12: 9 C 1.013569 0.170988 8.414597 +12: 10 A 0.412764 0.191649 7.962251 +12: 11 G 0.250480 0.134047 7.393412 +12: 12 A 0.458163 0.117234 6.707494 +12: 13 T 0.178411 0.124805 7.581464 +12: 14 G -0.025012 0.110542 7.590659 +12: 15 C 0.044162 0.105856 7.092888 +12: 16 T 0.061498 0.127763 7.264974 +12: 17 T -0.513525 0.171520 7.296825 +12: 18 C 1.112436 0.140592 8.244479 +12: 19 C 1.066347 0.100407 8.955942 +12: 20 C 1.584310 0.141204 9.109225 +12: 21 A 0.573389 0.187423 7.842996 +12: 22 T 1.256531 0.133714 7.690176 +12: 23 T 1.229335 0.102461 8.701999 +12: 24 T 1.343236 0.114901 7.983737 +12: 25 A 1.490604 0.126771 8.707528 +12: 26 T 0.577702 0.190845 7.439801 +12: 27 T 0.243798 0.109822 8.525366 +12: 28 T 0.225924 0.108937 7.258288 +12: 29 T -0.151422 0.116616 6.949590 +12: 30 G -0.461237 0.123034 7.370571 +12: 31 C -0.920595 0.167978 6.913722 +12: 32 C 0.697490 0.116648 6.932203 +12: 33 A 1.250611 0.103988 7.395932 +12: 34 G 1.408610 0.109263 7.368258 +12: 35 G 0.978506 0.138890 7.284063 +12: 36 T 0.002591 0.147569 7.155144 +12: 37 T 0.529287 0.113453 7.755282 +12: 38 T 0.881991 0.129039 7.141699 +12: 39 T 0.456806 0.122161 6.772672 +12: 40 C 0.352499 0.109680 7.501411 +12: 41 T 0.955144 0.124407 7.369837 +12: 42 T 0.618668 0.140725 6.997858 +12: 43 C 1.122972 0.127074 7.031722 +12: 44 C 1.128262 0.136292 7.779564 +12: 45 T 0.313741 0.216311 7.285414 +12: 46 C 1.673615 0.180580 7.869911 +12: 47 T 0.773369 0.199797 6.926927 +12: 48 T 1.111612 0.152472 7.700045 +12: 49 A 1.527846 0.142648 7.658555 +12: 50 T 0.494435 0.140173 7.637252 +12: 51 A 0.711864 0.125759 8.584886 +12: 52 C 0.113872 0.178964 6.512078 +12: 53 T -0.069664 0.137278 7.772210 +12: 54 C -0.716845 0.136451 6.106913 +12: 55 T -0.764959 0.100291 6.854393 +12: 56 A -0.399828 0.131407 5.484698 +12: 57 C -1.077278 0.135355 7.093230 +12: 58 A -0.943716 0.173027 7.178404 +12: 59 A 1.085228 0.160291 6.531012 +12: 60 G 0.436126 0.116139 7.309725 +12: 61 G 0.469768 0.105588 7.172529 +12: 62 A -0.079028 0.098733 7.621417 +12: 63 T -0.255751 0.111138 7.782254 +12: 64 C -0.248174 0.106014 7.672738 +12: 65 T 0.126377 0.120747 7.710305 +12: 66 T 1.614102 0.189180 8.067512 +12: 67 T 0.066818 0.297728 7.821163 +12: 68 C -0.893164 0.220529 9.082178 +12: 69 C 1.113156 0.139759 10.286945 +12: 70 T 0.880943 0.115717 8.949919 +12: 71 G 0.839317 0.120004 7.967424 +12: 72 A 0.758226 0.138797 8.128489 +12: 73 T -0.152786 0.146068 7.122806 +12: 74 C 0.268391 0.117182 8.476938 +12: 75 C 0.018469 0.182038 7.426908 +12: 76 T -0.399575 0.119628 7.506029 +12: 77 C -0.563992 0.137484 6.572974 +12: 78 T 0.819372 0.148341 6.119859 +12: 79 A 2.199081 0.183366 7.992210 +12: 80 G 1.008695 0.267460 7.051845 +12: 81 G 0.637207 0.145521 7.782193 +12: 82 C -0.348380 0.149592 8.496963 +12: 83 T 0.586681 0.135851 9.006288 +12: 84 G 0.503543 0.141529 7.541368 +12: 85 T -0.393491 0.150854 6.904460 +12: 86 A -1.075799 0.139004 7.768390 +12: 87 T -0.964355 0.229861 6.492065 +12: 88 C 1.194210 0.173337 8.878307 +12: 89 A 0.668653 0.194576 7.485297 +12: 90 G 0.456038 0.118715 8.211016 +12: 91 A 0.079889 0.108657 7.335958 +12: 92 T -0.393087 0.100731 7.503078 +12: 93 G -0.323256 0.097249 8.073540 +12: 94 C -0.200923 0.106431 7.942925 +12: 95 C -0.092830 0.106965 7.846553 +12: 96 C 0.280537 0.128783 9.250873 +12: 97 C 1.378857 0.166162 9.963839 +12: 98 C 0.307086 0.183868 9.047989 +12: 99 C 1.144177 0.118574 8.793784 +12: 100 C 1.383475 0.112529 9.083367 +12: 101 T 1.753331 0.124353 8.428049 +12: 102 G 1.968511 0.137366 10.298707 +12: 103 T 1.033458 0.239255 7.332140 +12: 104 T 0.506991 0.127580 9.154009 +12: 105 T 0.207010 0.128645 8.800764 +12: 106 T -0.708090 0.140997 7.025325 +12: 107 G -0.697496 0.137882 7.923243 +12: 108 C 0.462083 0.130179 7.264440 +12: 109 C 0.234052 0.108420 7.428887 +12: 110 A 1.057662 0.115072 8.531406 +12: 111 A 0.901951 0.133741 8.100545 +12: 112 C -0.290594 0.176260 8.511910 +12: 113 C -0.984401 0.161348 8.931733 +12: 114 T 0.451360 0.153007 8.667199 +12: 115 T 0.032067 0.127939 8.286752 +12: 116 A 1.115080 0.142716 8.625702 +12: 117 G 0.464987 0.115707 7.247863 +12: 118 C -0.050047 0.103996 6.866345 +12: 119 A 0.353787 0.140461 7.754554 +12: 120 C -0.187451 0.171386 7.239402 +12: 121 C 0.831581 0.134122 8.297323 +12: 122 C 0.209593 0.149639 8.195488 +12: 123 T 0.757033 0.148656 8.708257 +12: 124 G 1.777828 0.144726 7.959224 +12: 125 T 1.468117 0.131804 9.134960 +12: 126 G 0.189170 0.257667 7.039240 +12: 127 C -0.811868 0.230644 9.109518 +12: 128 T 0.945595 0.149728 7.732733 +12: 129 T 1.474979 0.139072 7.399189 +12: 130 A 0.805139 0.121541 7.252198 +12: 131 A 0.995888 0.158593 7.199490 +12: 132 T -0.124817 0.186475 8.062272 +12: 133 T 0.492304 0.140067 9.180777 +12: 134 C 0.177903 0.131961 7.360587 +12: 135 T -0.426143 0.148755 7.260666 +12: 136 G 1.674326 0.215375 6.540966 +12: 137 T 0.066639 0.275680 6.270622 +12: 138 C -0.731496 0.189001 7.334821 +12: 139 A 1.176365 0.175965 7.069396 +12: 140 T 0.349698 0.180990 7.026996 +12: 141 A 1.088653 0.121130 7.151761 +12: 142 A 0.642430 0.109925 7.719660 +12: 143 T 0.710488 0.117924 8.804646 +12: 144 A -0.068179 0.180409 8.006503 +12: 145 T -0.766603 0.150590 9.184913 +12: 146 T 0.388911 0.122124 8.341138 +12: 147 T 0.448692 0.107199 8.969172 +12: 148 A 1.260516 0.121337 8.179259 +12: 149 G 0.690860 0.131097 8.578660 +12: 150 C 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G 0.543640 0.138828 7.652001 +12: 1890 G -0.468226 0.137546 7.557824 +12: 1891 G -0.192185 0.116225 8.552762 +12: 1892 C 0.149085 0.149862 7.012866 +12: 1893 C -0.565017 0.187764 7.907248 +12: 1894 A -1.095203 0.124040 8.735223 +12: 1895 C -0.626542 0.117937 8.433233 +12: 1896 T -0.356134 0.127098 7.856489 +12: 1897 G -0.388737 0.138934 6.922972 +12: 1898 A -0.798460 0.135342 8.096433 +12: 1899 G 0.641712 0.161688 7.155281 +12: 1900 G 0.105700 0.160176 7.007226 +12: 1901 G -0.872380 0.155054 8.968177 +12: 1902 G 0.346551 0.179715 8.190380 +12: 1903 T -0.871988 0.153463 8.955970 +12: 1904 C -0.831792 0.209823 8.604092 +12: 1905 G 1.055954 0.168707 7.938014 +12: 1906 T 1.400384 0.122921 7.891558 +12: 1907 A 1.465080 0.138747 8.338589 +12: 1908 A 0.324852 0.267364 7.479198 +12: 1909 T -1.046422 0.132874 9.353077 +12: 1910 T -1.174766 0.117780 8.695929 +12: 1911 T -1.068049 0.127840 8.906040 +12: 1912 G -0.653173 0.124443 7.482734 +12: 1913 G -0.506250 0.138421 6.687300 +12: 1914 G 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0.119529 8.063126 +12: 1940 C 0.827763 0.128725 6.328704 +12: 1941 T 0.191133 0.118858 6.636865 +12: 1942 C -0.307814 0.129990 6.166005 +12: 1943 T 0.479330 0.124505 7.424185 +12: 1944 C -0.165799 0.115159 7.243512 +12: 1945 C 0.620165 0.108758 8.095183 +12: 1946 A 0.503522 0.144688 7.453793 +12: 1947 C -0.500417 0.146307 8.382586 +12: 1948 A 0.792017 0.101569 8.711685 +12: 1949 C 0.783656 0.115688 8.270122 +12: 1950 C 0.281216 0.107654 9.088181 +12: 1951 A 1.222403 0.121913 8.473233 +12: 1952 T 0.725643 0.118725 7.067558 +12: 1953 T 0.406659 0.117538 7.901134 +12: 1954 C 0.316946 0.119739 7.690946 +12: 1955 T 0.896241 0.120607 8.415087 +12: 1956 C 1.444519 0.134887 7.609319 +12: 1957 C 0.375621 0.194109 6.740160 +12: 1958 C -0.338978 0.182719 7.934220 +12: 1959 T 1.530010 0.151767 8.687012 +12: 1960 T 0.978870 0.124735 7.530356 +12: 1961 A 1.706405 0.152250 8.105338 +12: 1962 G 0.767830 0.153857 9.127904 +12: 1963 T -0.085021 0.114550 9.713516 +12: 1964 C 0.660394 0.141505 8.323260 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A -1.012694 0.139956 7.981716 +12: 536 A -1.371397 0.159086 8.241878 +12: 537 T -0.006256 0.145473 7.825806 +12: 538 C 0.775771 0.130410 9.180575 +12: 539 A 0.271407 0.201722 7.723079 +12: 540 G -0.619515 0.173335 8.196575 +12: 541 T 1.008641 0.158725 7.926038 +12: 542 T -0.222349 0.206860 7.410924 +12: 543 G -0.886582 0.185500 8.536436 +12: 544 G 0.931913 0.132898 7.527556 +12: 545 T 0.748103 0.090976 6.732860 +12: 546 G 0.858973 0.115286 7.891891 +12: 547 A -0.078024 0.246420 6.944346 +12: 548 T -1.365582 0.196842 8.158941 +12: 549 T 0.540385 0.157938 8.014486 +12: 550 T 0.083148 0.153284 8.373702 +12: 551 G -0.435882 0.129398 8.544078 +12: 552 G 0.460677 0.165597 6.994655 +12: 553 T -0.608372 0.171234 6.682307 +12: 554 A 0.659926 0.131934 7.464494 +12: 555 G 0.484528 0.106696 7.403248 +12: 556 C 0.496617 0.121788 8.396399 +12: 557 A -0.369880 0.157002 8.806280 +12: 558 T 0.858043 0.124785 8.962872 +12: 559 T 1.099324 0.131605 7.321887 +12: 560 T 0.519422 0.131022 7.766441 +12: 561 A 1.283720 0.126130 7.942295 +12: 562 T 0.950935 0.145772 7.509161 +12: 563 T 0.235258 0.173058 7.579078 +12: 564 C -0.848679 0.139841 7.730261 +12: 565 T -0.773136 0.227628 7.170025 +12: 566 T 1.592361 0.185059 6.839954 +12: 567 C 1.657763 0.126888 8.221360 +12: 568 A 0.669823 0.203249 6.748996 +12: 569 A 0.974370 0.118116 7.143925 +12: 570 T 0.691344 0.102789 7.428335 +12: 571 T 0.725307 0.110262 7.434949 +12: 572 A 1.151147 0.124738 7.820457 +12: 573 T 0.284221 0.194948 7.259562 +12: 574 T -0.557004 0.150871 8.121720 +12: 575 T 0.531261 0.133317 7.705036 +12: 576 T 1.240177 0.109625 8.080192 +12: 577 A 1.233392 0.108421 8.062259 11: 928 G -0.823620 0.182883 9.532703 11: 929 T 1.573712 0.225036 8.878208 11: 930 C -0.339260 0.145216 8.672433 @@ -427446,6 +427451,35 @@ 11: 559 T 0.653976 0.093942 7.747313 11: 560 T 0.721076 0.159104 7.596862 11: 561 A -1.113541 0.142178 7.064008 +12: 578 G 0.709108 0.106319 7.812791 +12: 579 C 0.410596 0.087618 8.145637 +12: 580 T 0.457344 0.099777 8.049680 +12: 581 T 0.290740 0.099987 8.435909 +12: 582 T 1.302000 0.130621 7.744569 +12: 583 T 0.773263 0.118159 7.705857 +12: 584 T 1.475547 0.143461 8.661454 +12: 585 C 0.430492 0.170265 7.779425 +12: 586 T 0.839619 0.139641 8.278427 +12: 587 C -0.200776 0.157649 7.510916 +12: 588 T -0.546136 0.182741 8.881922 +12: 589 G 1.832598 0.164956 8.361652 +12: 590 T 1.566273 0.121332 9.116512 +12: 591 A 0.300091 0.186477 8.080286 +12: 592 A 0.461733 0.138491 10.743159 +12: 593 T -0.402121 0.197353 8.996448 +12: 594 T -0.894658 0.115531 9.138332 +12: 595 G -0.542551 0.151287 7.720534 +12: 596 T 1.008739 0.157621 8.185129 +12: 597 A 0.505789 0.128562 7.612628 +12: 598 A 0.966798 0.145344 8.932740 +12: 599 G 0.022977 0.212905 8.173976 +12: 600 T -0.532864 0.153095 10.262908 +12: 601 C 0.737053 0.259955 12.031479 +12: 602 T -0.036625 0.303160 10.349803 +12: 603 G -0.572062 0.335164 12.230330 +12: 604 C 0.561030 0.467363 9.792212 +12: 605 T -0.235200 0.581865 6.671800 + 9/19 Test #12: test_squiggle_r10 ................ Passed 2.22 sec 11: 562 T 0.676813 0.123413 8.485894 11: 563 T 1.213495 0.153176 6.588950 11: 564 C -0.541277 0.140969 6.613651 @@ -427490,7 +427524,12 @@ 11: 603 G -0.348534 0.163240 9.530726 11: 604 C 0.161046 0.266937 15.063370 11: 605 T 0.194787 0.502125 16.019979 -10/19 Test #11: test_squiggle_r94 ................ Passed 4.11 sec +10/19 Test #11: test_squiggle_r94 ................ Passed 2.28 sec +1: Test: Decoding same as Sloika ...passed +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } +1: Test: Decoding of original and vectorised posterior same ...passed +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Decoding of original and vectorised posterior same with stay penalty ...passed 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.231445 over 12818 blocks (0.903513 per block) 10: block pos @@ -440312,13 +440351,6 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -11/19 Test #10: test_seqmappy .................... Passed 8.41 sec -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Decoding of original and vectorised posterior same with skip penalty ...passed 1: Suite: Test output of vectorised ELU unit 1: Test: Test input all zeros ...passed @@ -440361,24 +440393,29 @@ 1: Test: Test assumptions about bounds -- overlap ...scrappie_unittest: Blocks 3 and 4 don't overlap [3 , 3) -> [4 , 6) 1: 1: passed -3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } -3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } -1: Test: Test mapping -- viterbi ...passed +11/19 Test #10: test_seqmappy .................... Passed 4.81 sec 4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG 4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } 4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -12/19 Test #4: test_rawrgrgr_r94_call ........... Passed 12.52 sec -1: Test: Test mapping -- forward ...passed +12/19 Test #4: test_rawrgrgr_r94_call ........... Passed 5.59 sec +1: Test: Test mapping -- viterbi ...passed 6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 -3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } -3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT -13/19 Test #3: test_raw_call .................... Passed 14.74 sec +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG 5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } 5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -14/19 Test #5: test_rawrgrgr_r941_call .......... Passed 15.97 sec +13/19 Test #5: test_rawrgrgr_r941_call .......... Passed 6.03 sec +1: Test: Test mapping -- forward ...passed +3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA +3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } +3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } +3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT +14/19 Test #3: test_raw_call .................... Passed 6.26 sec 1: Test: Test mapping -- viterbi with path ...Viterbi mapping path 1: 0, 0, 0, 0, 0, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3 1: , 3, 4, 4, 4, 5, 5, 6, 6, 6, 6, 7, 7, 8, 8, 8, 8, 8, 9, 9, 9 @@ -440431,21 +440468,11 @@ 1: , 156, 156, 156, 156, 156, 156, 157, 157, 157, 157, 157, 157, 157, 158, 158, 158, 158, 159, 159, 160 1: , 160, 160, 160, 160, 160, 160, 161, 161, 161, 161, 161, 161, 161, 161, 161, 162, 162, 162, 162, 162 1: passed +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- forwards score exceeds Viterbi ...vit = -109.542824 fwd = -87.884453 1: passed -2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } -2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 1: Test: Test mapping -- forwards with full band equals forwards ...fwd = -87.884453 fwdB = -87.884453 1: passed -6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } -6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } -6: TCTGGTTTTTTATTATGTTTTATCTTCCATA -15/19 Test #6: test_rawrgrgr_r10_call ........... Passed 19.46 sec -7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } -7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- Viterbi with full band equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi ...vit = -109.542824 vitB = -109.542824 @@ -440454,14 +440481,21 @@ 1: passed 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed +6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } +6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA +6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } +6: TCTGGTTTTTTATTATGTTTTATCTTCCATA +15/19 Test #6: test_rawrgrgr_r10_call ........... Passed 10.77 sec 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed +1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed 2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT +2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } +2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA 2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } 2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -16/19 Test #2: test_events_call ................. Passed 31.79 sec -1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed +16/19 Test #2: test_events_call ................. Passed 11.24 sec 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 @@ -440690,8 +440724,14 @@ 1: tests 71 71 71 0 0 1: asserts 506 506 506 0 n/a 1: -1: Elapsed time = 11.756 seconds -17/19 Test #1: unittest ......................... Passed 34.37 sec +1: Elapsed time = 9.647 seconds +17/19 Test #1: unittest ......................... Passed 12.05 sec +7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG +7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } +7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } +7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA +18/19 Test #7: test_rawrnnrf_r94_call ........... Passed 13.32 sec 9: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa (score = -35302.484375) 9: idx signal pos base current sd dwell 9: 0 nan -1 N nan nan nan @@ -468968,10 +469008,6 @@ 9: 28271 1.564819 2205 T 1.281662 0.234467 8.428472 9: 28272 1.456900 2205 T 1.281662 0.234467 8.428472 9: 28273 1.686227 2205 T 1.281662 0.234467 8.428472 -7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } -7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA -18/19 Test #7: test_rawrnnrf_r94_call ........... Passed 37.51 sec 9: 28274 0.984757 2205 T 1.281662 0.234467 8.428472 9: 28275 0.903818 2205 T 1.281662 0.234467 8.428472 9: 28276 0.566572 2205 T 1.281662 0.234467 8.428472 @@ -505093,17 +505129,17 @@ 9: 64392 nan -1 N nan nan nan 9: 64393 nan -1 N nan nan nan 9: 64394 nan -1 N nan nan nan -19/19 Test #9: test_mappy ....................... Passed 38.32 sec +19/19 Test #9: test_mappy ....................... Passed 13.57 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 38.44 sec +Total Test time (real) = 13.71 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' - rm -fr -- /tmp/dh-xdg-rundir-ukkI81Rg - cd build_sse2 && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + rm -fr -- /tmp/dh-xdg-rundir-qTsY1K5h + cd build_sse2 && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_sse2/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_sse2/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_sse2 @@ -505263,25 +505299,6 @@ 1: Test: Simple convolution, antisymmetric filter length 3 ...passed 1: Test: Scrappie convolution, antisymmetric filter length 3 ...passed 1: Suite: Test decoding -18: Usage: squiggle [OPTION...] fasta [fasta ...] -18: Scrappie squiggler -18: -18: --licence, --license Print licensing information -18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -18: -m, --model=name Squiggle model to use: "squiggle_r94", -18: "squiggle_r94_rna", "squiggle_r10" -18: -o, --output=filename Write to file rather than stdout -18: -p, --prefix=string Prefix to append to name of each read -18: --rescale, --no-rescale Rescale network output -18: -?, --help Give this help list -18: --usage Give a short usage message -18: -V, --version Print program version -18: -18: Mandatory or optional arguments to long options are also mandatory or optional -18: for any corresponding short options. -18: -18: Report bugs to . - 1/19 Test #18: test_help_squiggle ............... Passed 0.16 sec 14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies 14: Limited Research Algorithms group. 14: @@ -505306,7 +505323,75 @@ 14: such, may change drastically between releases and breaks backwards 14: compatibility. Newer versions may drop support of current features or change their 14: behaviour. -19: scrappie 1.4.0- + 1/19 Test #14: test_help ........................ Passed 0.10 sec +17: Usage: raw [OPTION...] fast5 [fast5 ...] +17: Scrappie basecaller -- basecall from raw signal +17: +17: -#, --threads=nparallel Number of reads to call in parallel +17: -f, --format=format Format to output reads (FASTA or SAM) +17: --hdf5-chunk=size Chunk size for HDF5 output +17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +17: 1: quickest, 9: best) +17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from +17: "nochange" or "mean" (default). Not implemented +17: for CRF. +17: --licence, --license Print licensing information +17: --local=penalty Penalty for local basecalling +17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", +17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" +17: -m, --min_prob=probability Minimum bound on probability of match +17: -o, --output=filename Write to file rather than stdout +17: -p, --prefix=string Prefix to append to name of each read +17: --segmentation=chunk:percentile +17: Chunk size and percentile for variance based +17: segmentation +17: --slip, --no-slip Use slipping +17: -s, --skip=penalty Penalty for skipping a base +17: --temperature1=factor Temperature for softmax weights +17: --temperature2=factor Temperature for softmax bias +17: -t, --trim=start:end Number of samples to trim, as start:end +17: --uuid, --no-uuid Output UUID +17: -y, --stay=penalty Penalty for staying +17: -?, --help Give this help list +17: --usage Give a short usage message +17: -V, --version Print program version +17: +17: Mandatory or optional arguments to long options are also mandatory or optional +17: for any corresponding short options. +17: +17: Report bugs to . +18: Usage: squiggle [OPTION...] fasta [fasta ...] +18: Scrappie squiggler +18: +18: --licence, --license Print licensing information +18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +18: -m, --model=name Squiggle model to use: "squiggle_r94", +18: "squiggle_r94_rna", "squiggle_r10" +18: -o, --output=filename Write to file rather than stdout +18: -p, --prefix=string Prefix to append to name of each read +18: --rescale, --no-rescale Rescale network output +18: -?, --help Give this help list +18: --usage Give a short usage message +18: -V, --version Print program version +18: +18: Mandatory or optional arguments to long options are also mandatory or optional +18: for any corresponding short options. +18: +18: Report bugs to . + 2/19 Test #17: test_help_raw .................... Passed 0.13 sec + 3/19 Test #18: test_help_squiggle ............... Passed 0.28 sec +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. 15: Usage: events [OPTION...] fast5 [fast5 ...] 15: Scrappie basecaller -- basecall via events 15: @@ -505358,43 +505443,7 @@ 16: for any corresponding short options. 16: 16: Report bugs to . -17: Usage: raw [OPTION...] fast5 [fast5 ...] -17: Scrappie basecaller -- basecall from raw signal -17: -17: -#, --threads=nparallel Number of reads to call in parallel -17: -f, --format=format Format to output reads (FASTA or SAM) -17: --hdf5-chunk=size Chunk size for HDF5 output -17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -17: 1: quickest, 9: best) -17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from -17: "nochange" or "mean" (default). Not implemented -17: for CRF. -17: --licence, --license Print licensing information -17: --local=penalty Penalty for local basecalling -17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", -17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" -17: -m, --min_prob=probability Minimum bound on probability of match -17: -o, --output=filename Write to file rather than stdout -17: -p, --prefix=string Prefix to append to name of each read -17: --segmentation=chunk:percentile -17: Chunk size and percentile for variance based -17: segmentation -17: --slip, --no-slip Use slipping -17: -s, --skip=penalty Penalty for skipping a base -17: --temperature1=factor Temperature for softmax weights -17: --temperature2=factor Temperature for softmax bias -17: -t, --trim=start:end Number of samples to trim, as start:end -17: --uuid, --no-uuid Output UUID -17: -y, --stay=penalty Penalty for staying -17: -?, --help Give this help list -17: --usage Give a short usage message -17: -V, --version Print program version -17: -17: Mandatory or optional arguments to long options are also mandatory or optional -17: for any corresponding short options. -17: -17: Report bugs to . +19: scrappie 1.4.0- 8: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 8: #event start mean stdv dwell 8: 0 0 74.501198 0.733543 4 @@ -506621,6 +506670,10 @@ 8: 1221 6258 76.816338 2.426860 4 8: 1222 6262 85.456436 1.318254 5 8: 1223 6267 80.867828 0.746738 8 + 4/19 Test #13: test_licence ..................... Passed 0.32 sec + 5/19 Test #15: test_help_events ................. Passed 0.31 sec + 6/19 Test #16: test_help_event_table ............ Passed 0.29 sec + 7/19 Test #19: test_version ..................... Passed 0.28 sec 8: 1224 6275 95.260284 2.042039 3 8: 1225 6278 91.679535 1.237831 3 8: 1226 6281 93.763161 0.304587 4 @@ -517454,2892 +517507,347 @@ 8: 12054 62322 58.315063 0.909611 7 8: 12055 62329 59.526875 0.637186 5 8: 12056 62334 57.847626 0.859801 3 -8: 12057 62337 61.601238 0.637186 5 -8: 12058 62342 93.902069 4.651529 8 -8: 12059 62350 62.817459 0.851670 6 -8: 12060 62356 61.243164 0.531020 3 -8: 12061 62359 64.268280 1.652413 5 -8: 12062 62364 63.365376 1.456649 8 -8: 12063 62372 63.082928 1.139340 5 -8: 12064 62377 61.397507 0.621278 4 -8: 12065 62381 78.899963 1.200179 3 -8: 12066 62384 80.593323 1.492985 7 -8: 12067 62391 83.345032 1.185854 8 -8: 12068 62399 88.283997 1.973580 9 -8: 12069 62408 86.539925 0.852386 4 -8: 12070 62412 84.950195 1.114535 3 -8: 12071 62415 84.641510 3.027462 5 -8: 12072 62420 65.379547 1.701476 5 -8: 12073 62425 68.296623 1.129548 4 -8: 12074 62429 63.897858 0.755998 3 -8: 12075 62432 51.525749 1.577738 5 -8: 12076 62437 51.604465 1.306254 8 -8: 12077 62445 54.544693 2.239832 4 -8: 12078 62449 84.178482 2.005607 4 -8: 12079 62453 82.974609 0.234895 5 -8: 12080 62458 71.182831 0.832682 3 -8: 12081 62461 82.339600 0.906789 7 -8: 12082 62468 78.529541 1.128899 7 -8: 12083 62475 94.149017 2.607644 3 -8: 12084 62478 90.321320 3.089249 3 -8: 12085 62481 94.704651 2.344583 3 -8: 12086 62484 91.401711 1.185442 6 -8: 12087 62490 70.333946 0.920417 4 -8: 12088 62494 72.440720 2.892356 8 -8: 12089 62502 52.562935 1.940396 10 -8: 12090 62512 60.625793 1.006934 3 -8: 12091 62515 63.136433 1.734023 9 -8: 12092 62524 86.370148 5.465803 3 -8: 12093 62527 94.581177 0.911622 3 -8: 12094 62530 91.833885 1.922574 6 -8: 12095 62536 76.121796 0.659219 3 -8: 12096 62539 80.497406 2.863257 8 -8: 12097 62547 77.233063 0.958871 5 -8: 12098 62552 76.631126 1.941905 8 -8: 12099 62560 76.121788 1.952812 7 -8: 12100 62567 84.715591 0.984499 5 -8: 12101 62572 84.764984 0.461930 3 -8: 12102 62575 86.539925 1.238029 4 -8: 12103 62579 69.701141 1.679379 9 -8: 12104 62588 88.308693 2.326289 5 -8: 12105 62593 88.222260 1.937500 15 -8: 12106 62608 85.752777 0.262388 3 -8: 12107 62611 88.098785 1.491840 3 -8: 12108 62614 84.715591 1.512158 5 -8: 12109 62619 64.083069 2.079006 3 -8: 12110 62622 44.141998 1.617018 3 -8: 12111 62625 46.011749 1.564842 7 -8: 12112 62632 45.423042 1.534992 4 -8: 12113 62636 73.055519 4.153547 9 -8: 12114 62645 74.842155 1.264564 11 -8: 12115 62656 73.634682 2.018590 7 -8: 12116 62663 74.454895 1.605654 7 -8: 12117 62670 74.871620 0.401414 4 -8: 12118 62674 75.843979 0.462985 4 -8: 12119 62678 74.640106 0.991664 3 -8: 12120 62681 77.356537 0.486136 3 -8: 12121 62684 72.602783 0.302980 3 -8: 12122 62687 75.936584 0.400195 3 -8: 12123 62690 74.084473 0.544862 3 -8: 12124 62693 75.195740 0.262388 3 -8: 12125 62696 73.528839 1.534754 3 -8: 12126 62699 75.279930 1.296028 11 -8: 12127 62710 73.899254 1.142443 7 -8: 12128 62717 76.121796 0.302173 3 -8: 12129 62720 73.862221 1.225143 5 -8: 12130 62725 75.597031 1.850227 6 -8: 12131 62731 84.409996 0.685010 4 -8: 12132 62735 86.864044 0.800085 3 -8: 12133 62738 85.984291 2.222049 8 -8: 12134 62746 91.576637 1.247654 9 -8: 12135 62755 92.543854 0.610776 3 -8: 12136 62758 91.142418 1.068914 10 -8: 12137 62768 89.864464 1.214134 5 -8: 12138 62773 92.327774 0.592927 4 -8: 12139 62777 90.197845 1.103528 4 -8: 12140 62781 94.395966 1.114535 3 -8: 12141 62784 91.864746 1.091963 8 -8: 12142 62792 89.568130 0.380814 5 -8: 12143 62797 91.648659 0.394047 6 -8: 12144 62803 91.803009 2.148537 6 -8: 12145 62809 74.315987 1.506982 4 -8: 12146 62813 61.073387 1.258758 4 -8: 12147 62817 60.934479 1.079935 5 -8: 12148 62822 62.323563 0.776706 6 -8: 12149 62828 59.730606 0.930573 4 -8: 12150 62832 59.020630 0.960397 3 -8: 12151 62835 60.996216 0.714662 3 -8: 12152 62838 60.008423 1.335641 4 -8: 12153 62842 103.224365 1.719886 3 -8: 12154 62845 107.175537 2.140340 3 -8: 12155 62848 105.305786 1.070284 7 -8: 12156 62855 107.015015 2.139199 5 -8: 12157 62860 79.224083 3.261997 4 -8: 12158 62864 78.492500 0.686789 5 -8: 12159 62869 81.122498 0.524311 3 -8: 12160 62872 79.032265 1.646492 7 -8: 12161 62879 75.603203 2.797617 5 -8: 12162 62884 58.866287 1.521413 6 -8: 12163 62890 80.593323 3.415698 7 -8: 12164 62897 82.110291 1.072790 6 -8: 12165 62903 85.011932 1.440554 4 -8: 12166 62907 86.987518 0.832975 3 -8: 12167 62910 85.336052 0.529870 4 -8: 12168 62914 82.048553 0.261456 3 -8: 12169 62917 82.928307 0.779059 4 -8: 12170 62921 84.849869 0.559890 8 -8: 12171 62929 73.991867 1.679815 4 -8: 12172 62933 77.171326 1.006813 3 -8: 12173 62936 78.899963 1.759184 9 -8: 12174 62945 60.537598 3.219281 7 -8: 12175 62952 85.382355 2.887879 9 -8: 12176 62961 84.888458 0.859801 3 -8: 12177 62964 86.169502 1.673991 8 -8: 12178 62972 86.184937 0.314059 3 -8: 12179 62975 87.002953 1.285815 4 -8: 12180 62979 89.703949 0.972272 3 -8: 12181 62982 84.579773 1.959178 6 -8: 12182 62988 64.422623 4.515760 6 -8: 12183 62994 64.036766 1.388253 4 -8: 12184 62998 61.443810 1.627177 4 -8: 12185 63002 61.416027 2.090833 5 -8: 12186 63007 86.771439 1.518763 4 -8: 12187 63011 88.777893 0.776234 3 -8: 12188 63014 87.647629 1.613390 13 -8: 12189 63027 89.298256 1.796535 7 -8: 12190 63034 59.082367 4.612975 6 -8: 12191 63040 54.575562 0.531250 3 -8: 12192 63043 55.722107 1.169059 7 -8: 12193 63050 60.008423 3.575463 3 -8: 12194 63053 73.528839 1.209702 3 -8: 12195 63056 75.121658 1.919523 5 -8: 12196 63061 76.986115 0.860085 3 -8: 12197 63064 73.862221 1.820027 5 -8: 12198 63069 81.168800 0.672420 4 -8: 12199 63073 79.960716 1.017666 11 -8: 12200 63084 83.283295 2.402188 6 -8: 12201 63090 73.497971 0.976781 6 -8: 12202 63096 69.983368 0.499022 7 -8: 12203 63103 71.244568 1.363768 3 -8: 12204 63106 72.000847 5.174919 4 -8: 12205 63110 94.040977 2.455065 4 -8: 12206 63114 90.568268 1.194470 5 -8: 12207 63119 93.130348 1.525499 6 -8: 12208 63125 95.791222 0.677484 5 -8: 12209 63130 93.050095 1.398939 5 -8: 12210 63135 75.380951 2.317035 4 -8: 12211 63139 75.529121 1.191195 5 -8: 12212 63144 73.034943 1.006813 3 -8: 12213 63147 73.872803 0.859801 7 -8: 12214 63154 69.983368 1.373401 7 -8: 12215 63161 71.491516 0.261456 3 -8: 12216 63164 69.194901 0.934108 5 -8: 12217 63169 70.639542 1.180903 5 -8: 12218 63174 69.927513 1.656839 18 -8: 12219 63192 66.676025 4.097744 4 -8: 12220 63196 49.327911 1.286195 3 -8: 12221 63199 50.840469 1.325825 4 -8: 12222 63203 51.720222 1.926443 4 -8: 12223 63207 52.970398 1.357398 7 -8: 12224 63214 49.883545 1.363768 3 -8: 12225 63217 52.150177 0.821614 7 -8: 12226 63224 50.933075 0.545086 3 -8: 12227 63227 52.732269 1.032315 7 -8: 12228 63234 51.488708 0.523845 3 -8: 12229 63237 51.998039 1.185030 8 -8: 12230 63245 50.933075 1.038210 7 -8: 12231 63252 53.402557 0.086996 3 -8: 12232 63255 52.637016 0.661622 10 -8: 12233 63265 51.396103 1.051877 4 -8: 12234 63269 53.155609 0.991541 3 -8: 12235 63272 51.673920 0.399890 3 -8: 12236 63275 56.072685 0.303785 4 -8: 12237 63279 58.135727 2.939494 9 -8: 12238 63288 98.393440 4.567527 4 -8: 12239 63292 97.976715 1.424877 5 -8: 12240 63297 99.211456 1.372156 3 -8: 12241 63300 97.939674 2.441303 5 -8: 12242 63305 82.641228 1.095088 5 -8: 12243 63310 82.511581 0.755514 10 -8: 12244 63320 80.789116 1.050251 5 -8: 12245 63325 75.103134 0.801914 4 -8: 12246 63329 76.739166 0.698422 3 -8: 12247 63332 74.022736 0.960397 3 -8: 12248 63335 76.280556 1.618678 7 -8: 12249 63342 92.383339 1.367879 5 -8: 12250 63347 90.074371 0.775919 3 -8: 12251 63350 85.629303 0.380173 3 -8: 12252 63353 67.972504 1.653152 6 -8: 12253 63359 65.342506 1.853655 5 -8: 12254 63364 85.091309 3.989366 7 -8: 12255 63371 71.244568 1.029354 3 -8: 12256 63374 67.787292 2.382595 4 -8: 12257 63378 66.182129 0.860085 3 -8: 12258 63381 69.157852 1.328401 5 -8: 12259 63386 63.342224 2.100909 3 -8: 12260 63389 66.120392 0.919887 3 -8: 12261 63392 61.939911 1.179144 7 -8: 12262 63399 62.897717 1.465838 5 -8: 12263 63404 61.990185 1.325365 10 -8: 12264 63414 55.155891 1.762511 5 -8: 12265 63419 59.479248 1.506010 7 -8: 12266 63426 56.674622 0.261923 3 -8: 12267 63429 63.126144 1.033497 6 -8: 12268 63435 61.243164 2.489529 9 -8: 12269 63444 53.896454 0.453663 3 -8: 12270 63447 53.032135 1.045942 6 -8: 12271 63453 44.219170 1.241573 8 -8: 12272 63461 54.340961 0.881117 5 -8: 12273 63466 53.488991 1.107503 5 -8: 12274 63471 46.179321 1.437245 3 -8: 12275 63474 44.388947 0.231229 3 -8: 12276 63477 44.774803 1.174164 4 -8: 12277 63481 45.932373 1.489383 3 -8: 12278 63484 44.366497 1.324720 11 -8: 12279 63495 46.534309 0.862636 4 -8: 12280 63499 43.586365 0.629573 3 -8: 12281 63502 52.896313 1.456398 5 -8: 12282 63507 44.932232 1.031901 5 -8: 12283 63512 43.956787 0.174693 3 - 2/19 Test #14: test_help ........................ Passed 0.71 sec - 3/19 Test #15: test_help_events ................. Passed 0.76 sec - 4/19 Test #16: test_help_event_table ............ Passed 0.72 sec - 5/19 Test #17: test_help_raw .................... Passed 0.69 sec - 6/19 Test #19: test_version ..................... Passed 0.65 sec -8: 12284 63515 45.129791 0.380494 3 -8: 12285 63518 46.279644 0.855959 8 -8: 12286 63526 44.450684 0.991664 3 -8: 12287 63529 48.278381 3.369063 3 -8: 12288 63532 44.311775 2.139456 8 -8: 12289 63540 46.071281 1.066971 4 -8: 12290 63544 43.709839 1.571575 3 -8: 12291 63547 45.145226 0.862565 4 -8: 12292 63551 47.352325 1.878707 3 -8: 12293 63554 45.561951 1.379786 4 -8: 12294 63558 44.450684 0.944440 3 -8: 12295 63561 46.142277 1.165399 15 -8: 12296 63576 44.080261 0.523845 3 -8: 12297 63579 45.423042 0.779059 4 -8: 12298 63583 46.673218 1.477864 6 -8: 12299 63589 48.093170 1.006813 3 -8: 12300 63592 45.129791 1.526019 6 -8: 12301 63598 43.462891 1.522295 3 -8: 12302 63601 44.635895 0.858736 4 -8: 12303 63605 46.170502 0.764987 7 -8: 12304 63612 45.469345 3.083910 4 -8: 12305 63616 87.049255 0.944505 3 -8: 12306 63619 85.903259 1.958181 16 -8: 12307 63635 86.956650 0.424471 4 -8: 12308 63639 90.197845 0.733211 6 -8: 12309 63645 91.049820 1.363947 5 -8: 12310 63650 89.086578 0.261456 3 -8: 12311 63653 90.938690 1.181316 3 -8: 12312 63656 88.963104 0.531250 3 -8: 12313 63659 90.876953 0.714662 3 -8: 12314 63662 86.678833 1.058356 3 -8: 12315 63665 89.642212 2.546252 4 -8: 12316 63669 76.924377 0.088388 3 -8: 12317 63672 76.060059 0.461930 3 -8: 12318 63675 73.220154 1.184412 6 -8: 12319 63681 64.823914 1.129548 5 -8: 12320 63686 69.713486 0.592927 5 -8: 12321 63691 70.287643 0.860369 6 -8: 12322 63697 72.278664 0.800695 4 -8: 12323 63701 85.104538 2.397712 6 -8: 12324 63707 86.493622 0.858664 4 -8: 12325 63711 85.530525 1.497231 5 -8: 12326 63716 84.764984 0.572396 3 -8: 12327 63719 85.536705 2.163484 6 -8: 12328 63725 76.936722 1.951812 5 -8: 12329 63730 88.234604 0.941657 5 -8: 12330 63735 88.901367 1.414731 6 -8: 12331 63741 75.936584 1.782894 3 -8: 12332 63744 71.815636 1.098650 4 -8: 12333 63748 70.071564 0.972272 3 -8: 12334 63751 71.614990 1.286195 3 -8: 12335 63754 68.620743 1.218149 4 -8: 12336 63758 62.045746 1.567258 5 -8: 12337 63763 62.749550 1.003412 5 -8: 12338 63768 70.611763 0.920417 4 -8: 12339 63772 70.380249 0.756160 3 -8: 12340 63775 71.693565 0.929392 11 -8: 12341 63786 70.380249 0.800391 3 -8: 12342 63789 71.584122 1.299790 4 -8: 12343 63793 73.047287 1.349009 5 -8: 12344 63798 88.855064 1.318624 4 -8: 12345 63802 88.253128 0.592927 4 -8: 12346 63806 89.168892 1.135584 9 -8: 12347 63815 84.703247 1.658901 3 -8: 12348 63818 89.753342 1.180489 5 -8: 12349 63823 89.197708 2.042636 10 -8: 12350 63833 89.848000 1.606566 9 -8: 12351 63842 87.357941 1.631148 3 -8: 12352 63845 89.382919 1.102642 5 -8: 12353 63850 88.222260 1.372334 3 -8: 12354 63853 89.670708 1.084109 13 -8: 12355 63866 88.753197 0.932801 5 -8: 12356 63871 90.098114 1.227930 13 -8: 12357 63884 87.373375 1.489711 8 -8: 12358 63892 68.921707 2.867007 8 -8: 12359 63900 52.711102 2.583990 5 -8: 12360 63905 54.637299 0.944376 3 -8: 12361 63908 52.562935 0.957979 10 -8: 12362 63918 51.872356 1.508763 14 -8: 12363 63932 66.259300 1.557178 4 -8: 12364 63936 63.403961 1.062155 3 -8: 12365 63939 64.731308 1.115192 4 -8: 12366 63943 53.649506 1.709706 6 -8: 12367 63949 67.023300 1.320844 8 -8: 12368 63957 81.955948 1.259534 6 -8: 12369 63963 84.950195 1.222350 3 -8: 12370 63966 82.743095 1.058817 8 -8: 12371 63974 78.761055 0.733543 4 -8: 12372 63978 78.251724 0.921478 4 -8: 12373 63982 70.195038 1.463087 5 -8: 12374 63987 89.364395 1.130412 4 -8: 12375 63991 92.049957 0.919621 3 -8: 12376 63994 90.012634 0.858664 4 -8: 12377 63998 83.085739 1.259146 5 -8: 12378 64003 67.879898 0.306983 4 -8: 12379 64007 68.633972 1.183381 7 -8: 12380 64014 63.990463 1.813981 6 -8: 12381 64020 62.971802 0.800238 3 -8: 12382 64023 63.897858 0.226966 4 -8: 12383 64027 62.292694 0.983879 3 -8: 12384 64030 64.638702 1.178626 4 -8: 12385 64034 62.601379 0.453932 3 -8: 12386 64037 65.286942 0.207289 4 -8: 12387 64041 63.434830 0.840271 6 -8: 12388 64047 66.814934 1.009235 4 -8: 12389 64051 65.009125 0.756160 3 -8: 12390 64054 66.027786 1.848247 6 -8: 12391 64060 50.686127 0.380494 3 -8: 12392 64063 53.124741 0.696321 6 -8: 12393 64069 51.982605 1.503414 6 -8: 12394 64075 54.637299 0.944376 3 -8: 12395 64078 52.637016 1.520129 5 -8: 12396 64083 61.066772 1.247263 7 - 7/19 Test #8: test_event_table ................. Passed 1.88 sec -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. - 8/19 Test #13: test_licence ..................... Passed 1.79 sec -12: #one -12: pos base current sd dwell -12: 0 T 0.273674 0.499834 0.755774 -12: 1 G -0.827003 0.326051 0.991839 -12: 2 T -0.104041 0.268039 1.205425 -12: 3 T -0.428139 0.173708 2.316947 -12: 4 G -0.597921 0.132543 4.125653 -12: 5 G 0.122584 0.172515 5.672003 -12: 6 C -0.753471 0.140175 6.365880 -12: 7 A -1.350900 0.119218 8.507021 -12: 8 G -0.993099 0.217650 7.099245 -12: 9 C 1.013569 0.170988 8.414597 -12: 10 A 0.412764 0.191649 7.962251 -12: 11 G 0.250480 0.134047 7.393412 -12: 12 A 0.458163 0.117234 6.707494 -12: 13 T 0.178411 0.124805 7.581464 -12: 14 G -0.025012 0.110542 7.590659 -12: 15 C 0.044162 0.105856 7.092888 -12: 16 T 0.061498 0.127763 7.264974 -12: 17 T -0.513525 0.171520 7.296825 -12: 18 C 1.112436 0.140592 8.244479 -12: 19 C 1.066347 0.100407 8.955942 -12: 20 C 1.584310 0.141204 9.109225 -12: 21 A 0.573389 0.187423 7.842996 -12: 22 T 1.256531 0.133714 7.690176 -12: 23 T 1.229335 0.102461 8.701999 -12: 24 T 1.343236 0.114901 7.983737 -12: 25 A 1.490604 0.126771 8.707528 -12: 26 T 0.577702 0.190845 7.439801 -12: 27 T 0.243798 0.109822 8.525366 -12: 28 T 0.225924 0.108937 7.258288 -12: 29 T -0.151422 0.116616 6.949590 -12: 30 G -0.461237 0.123034 7.370571 -12: 31 C -0.920595 0.167978 6.913722 -12: 32 C 0.697490 0.116648 6.932203 -12: 33 A 1.250611 0.103988 7.395932 -12: 34 G 1.408610 0.109263 7.368258 -12: 35 G 0.978506 0.138890 7.284063 -12: 36 T 0.002591 0.147569 7.155144 -12: 37 T 0.529287 0.113453 7.755282 -12: 38 T 0.881991 0.129039 7.141699 -12: 39 T 0.456806 0.122161 6.772672 -12: 40 C 0.352499 0.109680 7.501411 -12: 41 T 0.955144 0.124407 7.369837 -12: 42 T 0.618668 0.140725 6.997858 -12: 43 C 1.122972 0.127074 7.031722 -12: 44 C 1.128262 0.136292 7.779564 -12: 45 T 0.313741 0.216311 7.285414 -12: 46 C 1.673615 0.180580 7.869911 -12: 47 T 0.773369 0.199797 6.926927 -12: 48 T 1.111612 0.152472 7.700045 -12: 49 A 1.527846 0.142648 7.658555 -12: 50 T 0.494435 0.140173 7.637252 -12: 51 A 0.711864 0.125759 8.584886 -12: 52 C 0.113872 0.178964 6.512078 -12: 53 T -0.069664 0.137278 7.772210 -12: 54 C -0.716845 0.136451 6.106913 -12: 55 T -0.764959 0.100291 6.854393 -12: 56 A -0.399828 0.131407 5.484698 -12: 57 C -1.077278 0.135355 7.093230 -12: 58 A -0.943716 0.173027 7.178404 -12: 59 A 1.085228 0.160291 6.531012 -12: 60 G 0.436126 0.116139 7.309725 -12: 61 G 0.469768 0.105588 7.172529 -12: 62 A -0.079028 0.098733 7.621417 -12: 63 T -0.255751 0.111138 7.782254 -12: 64 C -0.248174 0.106014 7.672738 -12: 65 T 0.126377 0.120747 7.710305 -12: 66 T 1.614102 0.189180 8.067512 -12: 67 T 0.066818 0.297728 7.821163 -12: 68 C -0.893164 0.220529 9.082178 -12: 69 C 1.113156 0.139759 10.286945 -12: 70 T 0.880943 0.115717 8.949919 -12: 71 G 0.839317 0.120004 7.967424 -12: 72 A 0.758226 0.138797 8.128489 -12: 73 T -0.152786 0.146068 7.122806 -12: 74 C 0.268391 0.117182 8.476938 -12: 75 C 0.018469 0.182038 7.426908 -12: 76 T -0.399575 0.119628 7.506029 -12: 77 C -0.563992 0.137484 6.572974 -12: 78 T 0.819372 0.148341 6.119859 -12: 79 A 2.199081 0.183366 7.992210 -12: 80 G 1.008695 0.267460 7.051845 -12: 81 G 0.637207 0.145521 7.782193 -12: 82 C -0.348380 0.149592 8.496963 -12: 83 T 0.586681 0.135851 9.006288 -12: 84 G 0.503543 0.141529 7.541368 -12: 85 T -0.393491 0.150854 6.904460 -12: 86 A -1.075799 0.139004 7.768390 -12: 87 T -0.964355 0.229861 6.492065 -12: 88 C 1.194210 0.173337 8.878307 -12: 89 A 0.668653 0.194576 7.485297 -12: 90 G 0.456038 0.118715 8.211016 -12: 91 A 0.079889 0.108657 7.335958 -12: 92 T -0.393087 0.100731 7.503078 -12: 93 G -0.323256 0.097249 8.073540 -12: 94 C -0.200923 0.106431 7.942925 -12: 95 C -0.092830 0.106965 7.846553 -12: 96 C 0.280537 0.128783 9.250873 -12: 97 C 1.378857 0.166162 9.963839 -12: 98 C 0.307086 0.183868 9.047989 -12: 99 C 1.144177 0.118574 8.793784 -12: 100 C 1.383475 0.112529 9.083367 -12: 101 T 1.753331 0.124353 8.428049 -12: 102 G 1.968511 0.137366 10.298707 -12: 103 T 1.033458 0.239255 7.332140 -12: 104 T 0.506991 0.127580 9.154009 -12: 105 T 0.207010 0.128645 8.800764 -12: 106 T -0.708090 0.140997 7.025325 -12: 107 G -0.697496 0.137882 7.923243 -12: 108 C 0.462083 0.130179 7.264440 -12: 109 C 0.234052 0.108420 7.428887 -12: 110 A 1.057662 0.115072 8.531406 -12: 111 A 0.901951 0.133741 8.100545 -12: 112 C -0.290594 0.176260 8.511910 -12: 113 C -0.984401 0.161348 8.931733 -12: 114 T 0.451360 0.153007 8.667199 -12: 115 T 0.032067 0.127939 8.286752 -12: 116 A 1.115080 0.142716 8.625702 -12: 117 G 0.464987 0.115707 7.247863 -12: 118 C -0.050047 0.103996 6.866345 -12: 119 A 0.353787 0.140461 7.754554 -12: 120 C -0.187451 0.171386 7.239402 -12: 121 C 0.831581 0.134122 8.297323 -12: 122 C 0.209593 0.149639 8.195488 -12: 123 T 0.757033 0.148656 8.708257 -12: 124 G 1.777828 0.144726 7.959224 -12: 125 T 1.468117 0.131804 9.134960 -12: 126 G 0.189170 0.257667 7.039240 -12: 127 C -0.811868 0.230644 9.109518 -12: 128 T 0.945595 0.149728 7.732733 -12: 129 T 1.474979 0.139072 7.399189 -12: 130 A 0.805139 0.121541 7.252198 -12: 131 A 0.995888 0.158593 7.199490 -12: 132 T -0.124817 0.186475 8.062272 -12: 133 T 0.492304 0.140067 9.180777 -12: 134 C 0.177903 0.131961 7.360587 -12: 135 T -0.426143 0.148755 7.260666 -12: 136 G 1.674326 0.215375 6.540966 -12: 137 T 0.066639 0.275680 6.270622 -12: 138 C -0.731496 0.189001 7.334821 -12: 139 A 1.176365 0.175965 7.069396 -12: 140 T 0.349698 0.180990 7.026996 -12: 141 A 1.088653 0.121130 7.151761 -12: 142 A 0.642430 0.109925 7.719660 -12: 143 T 0.710488 0.117924 8.804646 -12: 144 A -0.068179 0.180409 8.006503 -12: 145 T -0.766603 0.150590 9.184913 -12: 146 T 0.388911 0.122124 8.341138 -12: 147 T 0.448692 0.107199 8.969172 -12: 148 A 1.260516 0.121337 8.179259 -12: 149 G 0.690860 0.131097 8.578660 -12: 150 C -0.033356 0.119710 8.996714 -12: 151 C 0.397997 0.110650 8.831608 -12: 152 T 0.260185 0.129188 7.858810 -12: 153 T -0.280449 0.119814 7.750637 -12: 154 C -0.470217 0.115889 7.681829 -12: 155 T 0.575082 0.146949 6.291042 -12: 156 C 1.799146 0.172314 7.486810 -12: 157 A 0.844886 0.176439 8.093428 -12: 158 G 1.448469 0.152054 9.029420 -12: 159 C 0.316506 0.223429 8.042208 -12: 160 T -0.922013 0.196240 9.864151 -12: 161 A 1.144369 0.150980 9.094522 -12: 162 T 1.147686 0.124510 8.017085 -12: 163 G 0.457062 0.130558 7.782852 -12: 164 G 0.494581 0.148596 8.240107 -12: 165 T -0.594848 0.167616 8.140071 -12: 166 T 0.793858 0.180858 9.434459 -12: 167 A -0.164905 0.171027 9.836936 -12: 168 C 0.701559 0.114116 9.122063 -12: 169 G 0.902073 0.114918 8.642534 -12: 170 T 1.277069 0.141490 7.743823 -12: 171 G 0.560736 0.182780 7.193562 -12: 172 T 1.029594 0.168157 7.147410 -12: 173 T 0.105893 0.191027 6.282142 -12: 174 T 0.873383 0.123613 7.713478 -12: 175 A 1.063095 0.107234 7.955980 -12: 176 T 1.048032 0.126394 7.948834 -12: 177 G 0.535373 0.129958 7.586320 -12: 178 T 0.134812 0.110879 7.299783 -12: 179 T 0.189506 0.114571 7.288369 -12: 180 T 0.864382 0.172411 7.733332 -12: 181 C -0.298826 0.195706 8.242532 -12: 182 C -0.983336 0.174232 9.401270 -12: 183 C 0.708725 0.177943 8.222429 -12: 184 T 1.586343 0.126727 8.987484 -12: 185 G 1.506788 0.137292 7.907163 -12: 186 A 0.915314 0.150236 8.250910 -12: 187 C -0.279722 0.236529 7.568242 -12: 188 T -1.213771 0.150381 9.776559 -12: 189 T -0.716519 0.246496 7.596628 -12: 190 T 1.720536 0.190907 7.279413 -12: 191 A 1.939440 0.153594 7.412075 -12: 192 G 0.806915 0.230256 6.458900 -12: 193 A 0.423449 0.153774 7.131793 -12: 194 T -0.687958 0.214838 6.478340 -12: 195 T -1.101607 0.130379 7.783386 -12: 196 G -0.723440 0.181976 6.310997 -12: 197 T 1.078309 0.135926 6.798953 -12: 198 G 1.098367 0.140556 7.279448 -12: 199 A 0.487809 0.160846 6.780677 -12: 200 G 0.337208 0.103093 7.082460 -12: 201 T 0.124310 0.120462 7.032188 -12: 202 T -0.740401 0.204070 6.715729 -12: 203 C -1.457625 0.156425 7.949944 -12: 204 T -0.979993 0.145497 7.157225 -12: 205 T -0.153786 0.234542 7.304358 -12: 206 G 1.747770 0.185290 7.164910 -12: 207 A 0.923244 0.150726 8.420387 -12: 208 A -0.219439 0.185891 7.145610 -12: 209 A 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-12: 1845 A 0.374534 0.220830 6.730651 -12: 1846 C -0.223256 0.139159 8.219902 -12: 1847 T -0.688077 0.137578 8.404921 -12: 1848 T -0.677189 0.131083 7.773622 -12: 1849 G -0.556521 0.128761 7.914368 -12: 1850 C -0.459951 0.188310 6.313677 -12: 1851 A 1.183637 0.153578 8.357196 -12: 1852 G 0.654888 0.123904 7.085598 -12: 1853 A 0.768162 0.146935 6.988475 -12: 1854 G -0.184429 0.140009 7.177394 -12: 1855 T -0.086158 0.111957 8.157167 -12: 1856 C 0.531198 0.119074 8.043587 -12: 1857 T 0.892525 0.127644 7.050701 -12: 1858 C 0.234613 0.178366 6.529207 -12: 1859 T -0.684699 0.181134 7.341182 -12: 1860 T 1.717872 0.197603 7.323440 -12: 1861 T 0.773959 0.257927 7.229456 -12: 1862 G -0.703910 0.163862 8.732985 -12: 1863 G -1.219425 0.125245 8.548782 -12: 1864 T -1.062588 0.129724 7.979484 -12: 1865 A -0.951476 0.120366 8.323326 -12: 1866 G -1.082666 0.119798 8.942129 -12: 1867 A -1.147270 0.168284 7.049138 -12: 1868 A 0.120409 0.168833 8.835416 -12: 1869 G -0.489656 0.158197 9.002485 -12: 1870 A 0.279384 0.133915 8.239852 -12: 1871 G -0.262262 0.119566 7.030302 -12: 1872 T -0.500275 0.114955 7.192374 -12: 1873 A -0.841461 0.132286 6.827838 -12: 1874 T -0.074053 0.142972 7.414171 -12: 1875 C 0.892720 0.149679 7.753975 -12: 1876 C 0.356182 0.147815 8.475304 -12: 1877 A 0.317176 0.106951 9.949014 -12: 1878 C 0.315309 0.133397 8.992968 -12: 1879 T -0.535658 0.133388 8.666631 -12: 1880 G -0.610055 0.105655 8.928836 -12: 1881 C -0.520772 0.128235 7.045292 -12: 1882 C 0.506064 0.136586 6.301645 -12: 1883 A 1.590023 0.155081 8.310630 -12: 1884 A 0.747346 0.274811 8.010700 -12: 1885 G -0.634829 0.143869 9.413188 -12: 1886 C -1.100895 0.129304 9.103161 -12: 1887 T -1.120144 0.152105 9.542959 -12: 1888 A 0.615355 0.163648 9.139679 -12: 1889 G 0.543640 0.138828 7.652001 -12: 1890 G -0.468226 0.137546 7.557824 -12: 1891 G -0.192185 0.116225 8.552762 -12: 1892 C 0.149085 0.149862 7.012866 -12: 1893 C -0.565017 0.187764 7.907248 -12: 1894 A -1.095203 0.124040 8.735223 -12: 1895 C -0.626542 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+8: 12382 64023 63.897858 0.226966 4 +8: 12383 64027 62.292694 0.983879 3 +8: 12384 64030 64.638702 1.178626 4 +8: 12385 64034 62.601379 0.453932 3 +8: 12386 64037 65.286942 0.207289 4 +8: 12387 64041 63.434830 0.840271 6 +8: 12388 64047 66.814934 1.009235 4 +8: 12389 64051 65.009125 0.756160 3 +8: 12390 64054 66.027786 1.848247 6 +8: 12391 64060 50.686127 0.380494 3 +8: 12392 64063 53.124741 0.696321 6 +8: 12393 64069 51.982605 1.503414 6 +8: 12394 64075 54.637299 0.944376 3 +8: 12395 64078 52.637016 1.520129 5 +8: 12396 64083 61.066772 1.247263 7 + 8/19 Test #8: test_event_table ................. Passed 0.65 sec 11: #one 11: pos base current sd dwell 11: 0 T -0.010010 0.502173 1.176593 @@ -522860,989 +520368,6 @@ 11: 2515 A -0.423683 0.118824 7.145892 11: 2516 T 1.096181 0.195750 7.263324 11: 2517 G -0.216749 0.161250 7.357249 -1: Test: Decoding same as Sloika ...passed -12: 2526 T 1.226972 0.187758 8.868389 -12: 2527 A 0.326663 0.163646 8.637415 -12: 2528 A 0.776825 0.159115 7.422452 -12: 2529 A -0.622245 0.205832 7.580650 -12: 2530 T -1.265517 0.217479 8.306485 -12: 2531 A 0.628805 0.121661 8.164207 -12: 2532 T 0.769511 0.098043 8.199687 -12: 2533 A 0.350800 0.127996 8.210618 -12: 2534 A -0.141438 0.109709 8.702918 -12: 2535 T 0.242651 0.102963 8.906513 -12: 2536 T 0.491109 0.120859 8.978339 -12: 2537 C -0.153347 0.134612 9.338113 -12: 2538 C 1.066516 0.127692 8.513339 -12: 2539 T 0.594936 0.148811 7.963649 -12: 2540 T -0.379407 0.161337 6.392164 -12: 2541 A -0.659223 0.108110 7.778077 -12: 2542 T -0.576142 0.108834 6.999051 -12: 2543 C -0.843715 0.130818 6.598724 -12: 2544 A -1.437682 0.135279 7.597930 -12: 2545 A -1.514829 0.124043 8.375982 -12: 2546 G -1.103884 0.122612 7.674520 -12: 2547 G -0.764696 0.161371 7.748152 -12: 2548 G 0.175790 0.134796 8.036445 -12: 2549 A -0.004486 0.092964 7.420146 -12: 2550 A -0.341161 0.127355 7.378166 -12: 2551 A -0.928757 0.137549 7.299687 -12: 2552 C -1.420619 0.184846 7.187764 -12: 2553 T 0.516770 0.172238 7.991004 -12: 2554 T 1.209236 0.132782 8.721268 -12: 2555 C 1.472676 0.122889 8.505735 -12: 2556 A 1.316731 0.137611 7.890669 -12: 2557 T -0.069831 0.213390 6.807758 -12: 2558 T -0.617375 0.194515 7.804194 -12: 2559 T 1.544968 0.190930 7.108366 -12: 2560 T 0.668908 0.243240 7.406156 -12: 2561 A -0.883512 0.149727 8.009659 -12: 2562 A -1.634685 0.122577 8.049137 -12: 2563 T -1.398357 0.110037 8.988862 -12: 2564 A -0.786857 0.100302 8.384510 -12: 2565 G -0.620314 0.109937 8.754931 -12: 2566 A -1.176952 0.137542 8.881434 -12: 2567 A -0.128371 0.133560 8.570903 -12: 2568 A -0.713346 0.138379 8.649867 -12: 2569 G 0.599217 0.158987 8.227661 -12: 2570 G -0.482809 0.249785 7.666263 -12: 2571 T -1.283436 0.205650 10.129151 -12: 2572 A 0.217471 0.195993 10.924161 -12: 2573 T -0.527437 0.183608 10.333318 -12: 2574 G 0.289440 0.216070 11.379429 -12: 2575 A -0.470523 0.228475 10.162048 -12: 2576 C -1.309896 0.346120 11.664120 -12: 2577 A 0.710910 0.445684 9.001451 -12: 2578 C -0.044387 0.550503 7.497941 -12: #two -12: pos base current sd dwell -12: 0 C 0.683936 0.292595 0.787175 -12: 1 T 0.285399 0.223970 1.363220 -12: 2 T 0.233159 0.229233 1.925318 -12: 3 T -0.284285 0.202461 3.632945 -12: 4 T 1.513357 0.179336 6.751537 -12: 5 C 0.495119 0.192543 6.420651 -12: 6 C 0.220424 0.123044 7.956814 -12: 7 A -0.270081 0.148077 7.616370 -12: 8 T 0.737105 0.154406 7.992534 -12: 9 G -0.257618 0.139907 7.938873 -12: 10 C 0.238270 0.144361 7.577223 -12: 11 A -0.565925 0.132718 7.805387 -12: 12 C 0.186974 0.157118 8.225278 -12: 13 A -0.566944 0.119921 8.531586 -12: 14 C -0.681718 0.155401 7.449421 -12: 15 A 1.114625 0.177478 8.406658 -12: 16 C 0.209275 0.178806 8.876794 -12: 17 A 0.182029 0.144124 7.857810 -12: 18 G -0.634468 0.142029 7.148503 -12: 19 T -0.808495 0.109849 7.214585 -12: 20 G -0.660106 0.130614 7.163760 -12: 21 C 0.377924 0.144487 6.444206 -12: 22 A 1.238849 0.168886 6.598902 -12: 23 A 0.372003 0.187160 7.691326 -12: 24 G 0.590835 0.115245 7.357205 -12: 25 C 0.507378 0.121377 7.407406 -12: 26 T -0.341736 0.206346 8.269124 -12: 27 G -1.183804 0.146394 8.195521 -12: 28 T -0.588579 0.236768 7.109519 -12: 29 T 1.548155 0.187290 8.619592 -12: 30 G 0.935080 0.159360 7.153718 -12: 31 A 0.080601 0.119322 8.334003 -12: 32 A 0.135833 0.144603 8.254804 -12: 33 T -0.689822 0.163885 7.153272 -12: 34 C -0.442044 0.116712 9.222482 -12: 35 C 0.006143 0.122890 7.686490 -12: 36 T -0.439292 0.176346 7.135783 -12: 37 G 1.580827 0.138243 8.895194 -12: 38 C 1.068271 0.129942 8.509816 -12: 39 C 0.509839 0.125859 8.376747 -12: 40 A 1.481592 0.150149 8.551979 -12: 41 T 0.501036 0.222623 8.407757 -12: 42 T -0.670658 0.131562 10.968962 -12: 43 C -0.698923 0.113698 9.856374 -12: 44 T -0.555862 0.113812 8.696571 -12: 45 G -0.455272 0.135835 8.416758 -12: 46 G 1.250371 0.149751 9.457069 -12: 47 G 0.623332 0.145319 8.499714 -12: 48 G 0.695963 0.143216 7.960942 -12: 49 G -0.249940 0.243618 7.950039 -12: 50 T -1.661689 0.142153 9.528579 -12: 51 C -1.203690 0.122606 8.463405 -12: 52 T -0.716455 0.128440 7.035435 -12: 53 G -0.759977 0.142399 8.437973 -12: 54 G -0.802840 0.157061 7.802762 -12: 55 A 0.680831 0.159626 7.500440 -12: 56 G -0.134592 0.260248 6.134130 -12: 57 G -1.229793 0.165220 8.214905 -12: 58 A 0.003239 0.172415 7.446199 -12: 59 T -0.742153 0.157955 7.368556 -12: 60 G -1.060039 0.135540 8.245991 -12: 61 G 0.171675 0.129316 7.841066 -12: 62 T 0.125342 0.112360 6.897592 -12: 63 G 0.160828 0.112461 7.940848 -12: 64 G 0.412585 0.131637 7.555494 -12: 65 C -0.240946 0.148206 7.376078 -12: 66 C 0.201810 0.116791 8.685833 -12: 67 C 0.887716 0.145968 7.398972 -12: 68 T 0.499432 0.140390 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0.119529 8.063126 +12: 1940 C 0.827763 0.128725 6.328704 +12: 1941 T 0.191133 0.118858 6.636865 +12: 1942 C -0.307814 0.129990 6.166005 +12: 1943 T 0.479330 0.124505 7.424185 +12: 1944 C -0.165799 0.115159 7.243512 +12: 1945 C 0.620165 0.108758 8.095183 +12: 1946 A 0.503522 0.144688 7.453793 +12: 1947 C -0.500417 0.146307 8.382586 +12: 1948 A 0.792017 0.101569 8.711685 +12: 1949 C 0.783656 0.115688 8.270122 +12: 1950 C 0.281216 0.107654 9.088181 +12: 1951 A 1.222403 0.121913 8.473233 +12: 1952 T 0.725643 0.118725 7.067558 +12: 1953 T 0.406659 0.117538 7.901134 +12: 1954 C 0.316946 0.119739 7.690946 +12: 1955 T 0.896241 0.120607 8.415087 +12: 1956 C 1.444519 0.134887 7.609319 +12: 1957 C 0.375621 0.194109 6.740160 +12: 1958 C -0.338978 0.182719 7.934220 +12: 1959 T 1.530010 0.151767 8.687012 +12: 1960 T 0.978870 0.124735 7.530356 +12: 1961 A 1.706405 0.152250 8.105338 +12: 1962 G 0.767830 0.153857 9.127904 +12: 1963 T -0.085021 0.114550 9.713516 +12: 1964 C 0.660394 0.141505 8.323260 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0.124719 7.792746 +12: 2522 G 0.756000 0.137015 7.887517 +12: 2523 T -0.083219 0.260580 7.076825 +12: 2524 A -1.159863 0.143544 8.895527 +12: 2525 T -0.833608 0.215293 6.887583 11: 916 C 0.063825 0.125462 7.512218 11: 917 T 1.840280 0.175977 7.643032 11: 918 C 0.707252 0.141712 6.249581 @@ -526462,7 +525515,988 @@ 11: 603 G -0.348534 0.163240 9.530726 11: 604 C 0.161046 0.266937 15.063370 11: 605 T 0.194787 0.502125 16.019979 - 9/19 Test #11: test_squiggle_r94 ................ Passed 4.42 sec +12: 2526 T 1.226972 0.187758 8.868389 +12: 2527 A 0.326663 0.163646 8.637415 +12: 2528 A 0.776825 0.159115 7.422452 +12: 2529 A -0.622245 0.205832 7.580650 +12: 2530 T -1.265517 0.217479 8.306485 +12: 2531 A 0.628805 0.121661 8.164207 +12: 2532 T 0.769511 0.098043 8.199687 +12: 2533 A 0.350800 0.127996 8.210618 +12: 2534 A -0.141438 0.109709 8.702918 +12: 2535 T 0.242651 0.102963 8.906513 +12: 2536 T 0.491109 0.120859 8.978339 +12: 2537 C -0.153347 0.134612 9.338113 +12: 2538 C 1.066516 0.127692 8.513339 +12: 2539 T 0.594936 0.148811 7.963649 +12: 2540 T -0.379407 0.161337 6.392164 +12: 2541 A -0.659223 0.108110 7.778077 +12: 2542 T -0.576142 0.108834 6.999051 +12: 2543 C -0.843715 0.130818 6.598724 +12: 2544 A -1.437682 0.135279 7.597930 +12: 2545 A -1.514829 0.124043 8.375982 +12: 2546 G -1.103884 0.122612 7.674520 +12: 2547 G -0.764696 0.161371 7.748152 +12: 2548 G 0.175790 0.134796 8.036445 +12: 2549 A -0.004486 0.092964 7.420146 +12: 2550 A -0.341161 0.127355 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-0.364165 0.182715 7.041233 +12: 752 G 0.892894 0.145848 6.838203 +12: 753 A 0.399583 0.104935 7.843359 +12: 754 A -0.090392 0.138851 7.045305 +12: 755 A -0.741510 0.133084 7.600445 +12: 756 T -0.076608 0.117990 8.831690 +12: 757 T 0.575917 0.122531 8.521066 +12: 758 T 0.396348 0.117540 7.400004 +12: 759 C 0.336381 0.129508 7.135323 +12: 760 T -0.296098 0.126173 7.538664 +12: 761 T 0.754498 0.134278 7.272652 +12: 762 C 0.570634 0.131441 7.471023 +12: 763 C -0.301266 0.150754 7.026673 +12: 764 A -1.089241 0.130924 8.359571 +12: 765 C -0.891213 0.204202 6.157887 +12: 766 C 1.187698 0.151289 7.815197 +12: 767 A 0.699206 0.148907 7.685817 +12: 768 G 0.859453 0.138246 7.218716 +12: 769 A 0.110326 0.113529 8.007671 +12: 770 T -0.573133 0.109303 7.809834 +12: 771 A 0.160647 0.140779 8.416762 +12: 772 C -0.607106 0.238873 6.926238 +12: 773 C -1.375090 0.143945 7.529040 +12: 774 C -0.727321 0.228887 6.320508 +12: 775 T 1.716978 0.213564 7.136853 +12: 776 A 1.037480 0.200790 6.591791 +12: 777 A -0.375573 0.152438 6.977933 +12: 778 A 0.294083 0.118732 8.265732 +12: 779 T -0.412313 0.128273 7.534913 +12: 780 C 0.467761 0.121931 7.692604 +12: 781 A 0.694621 0.099310 7.508051 +12: 782 T 1.022434 0.129565 7.312261 +12: 783 C 0.520601 0.107602 7.738882 +12: 784 T 0.963035 0.111832 7.985713 +12: 785 T 0.639632 0.146280 7.898321 +12: 786 T -0.446646 0.156350 6.866776 +12: 787 C -0.614743 0.113130 7.710178 +12: 788 T -0.535190 0.167600 7.175942 +12: 789 C 1.583690 0.139052 8.429122 +12: 790 A 1.403524 0.142349 9.093073 +12: 791 A 0.784560 0.212562 8.402529 +12: 792 G -0.875094 0.165868 8.367284 +12: 793 T -1.428303 0.121392 8.553694 +12: 794 T -0.844692 0.116103 6.840232 +12: 795 C -0.508932 0.154320 5.803417 +12: 796 A 1.083716 0.121168 6.730728 +12: 797 A 1.120631 0.133769 7.006570 +12: 798 A 0.565921 0.169895 6.237456 +12: 799 G -0.287633 0.131821 7.499897 +12: 800 T -0.954557 0.136637 7.585602 +12: 801 T -0.042949 0.144020 8.095634 +12: 802 C -0.630780 0.125970 7.035045 +12: 803 C -1.094138 0.115293 7.821174 +12: 804 A -0.763692 0.180703 7.596530 +12: 805 C 1.430074 0.160809 8.200112 +12: 806 A 0.809094 0.123266 9.027429 +12: 807 G 1.265324 0.149663 8.825529 +12: 808 A 0.209617 0.137352 8.288147 +12: 809 T -0.079373 0.124503 8.738391 +12: 810 C -0.452171 0.164519 8.834565 +12: 811 T -0.766276 0.112048 9.667779 +12: 812 C -0.427761 0.125496 7.307398 +12: 813 T -0.399193 0.110555 7.329756 +12: 814 A -0.628494 0.129760 7.383286 +12: 815 G 0.426976 0.135314 7.443417 +12: 816 G -0.475210 0.155548 7.028045 +12: 817 G -1.259211 0.114981 9.412148 +12: 818 G -1.354279 0.113707 8.760094 +12: 819 C -1.037628 0.116817 8.600402 +12: 820 A -1.026354 0.133807 9.991979 +12: 821 G 0.011751 0.161297 7.089959 +12: 822 A -0.892177 0.141092 7.596945 +12: 823 G -1.342138 0.116485 7.283675 +12: 824 G -1.516203 0.127794 7.949725 +12: 825 C -1.256931 0.212887 7.321044 +12: 826 A 0.686977 0.176424 7.286758 +12: 827 A 0.109084 0.126679 6.957078 +12: 828 G 0.246936 0.125009 6.844726 +12: 829 A 0.155294 0.156843 7.214825 +12: 830 T -0.466566 0.153242 7.257631 +12: 831 A -0.160594 0.115872 7.908098 +12: 832 C -0.031032 0.108130 8.067685 +12: 833 T 0.077300 0.137271 7.767864 +12: 834 A 0.966836 0.126766 8.297234 +12: 835 C 0.654304 0.129270 8.526112 +12: 836 C 0.181677 0.130513 8.458055 +12: 837 C 1.223384 0.128377 8.418778 +12: 838 T 0.642530 0.130163 8.002508 +12: 839 T 1.445477 0.143563 7.063337 +12: 840 C 1.468495 0.114006 7.618266 +12: 841 T 1.346177 0.125116 7.948597 +12: 842 C 0.507266 0.142388 8.382962 +12: 843 T 0.458335 0.120797 7.889842 +12: 844 T 1.751838 0.167964 7.505050 +12: 845 T 0.824843 0.254060 8.579382 +12: 846 G -0.668418 0.143617 8.836393 +12: 847 C -0.854191 0.113270 8.235130 +12: 848 T -0.681843 0.160025 6.497253 +12: 849 A 0.912011 0.193077 7.538339 +12: 850 G -0.295676 0.148624 7.810137 +12: 851 A 0.623740 0.172603 7.462111 +12: 852 G -0.741735 0.229331 7.181033 +12: 853 C -1.462626 0.150396 9.049275 +12: 854 A -0.192243 0.161587 7.037226 +12: 855 T -1.026400 0.135025 7.107962 +12: 856 A -1.304114 0.110389 6.801595 +12: 857 A -1.262507 0.115377 7.612866 +12: 858 C -1.195643 0.109655 7.481505 +12: 859 A -1.002681 0.115011 7.333045 +12: 860 A -0.774107 0.149281 6.822145 +12: 861 A 0.795120 0.155105 8.467321 +12: 862 G 0.045140 0.151132 7.223375 +12: 863 A -0.887827 0.129705 7.501885 +12: 864 G -0.387842 0.124788 6.927849 +12: 865 T -0.064752 0.103268 7.218560 +12: 866 C 0.480060 0.110928 7.963939 +12: 867 A 0.614648 0.105091 7.352736 +12: 868 C 1.202985 0.130696 7.944008 +12: 869 T 0.288374 0.204837 6.958231 +12: 870 T 1.409679 0.144649 7.267876 +12: 871 T 1.535589 0.121553 8.117357 +12: 872 T 0.986204 0.152978 8.163510 +12: 873 A 0.503143 0.110818 7.939424 +12: 874 T 0.847660 0.135894 7.473748 +12: 875 T -0.446286 0.189563 7.436403 +12: 876 C -0.981246 0.173357 9.234297 +12: 877 C 1.083422 0.130830 8.237361 +12: 878 T 0.810071 0.109244 9.343346 +12: 879 A 0.786057 0.123261 9.004956 +12: 880 A 0.326034 0.110125 9.793424 +12: 881 T -0.422793 0.134059 9.198938 +12: 882 C -1.319313 0.118737 8.346907 +12: 883 C -1.180917 0.186940 8.151896 +12: 884 C 1.238779 0.169846 7.664610 +12: 885 C 1.698921 0.134090 8.018693 +12: 886 A 0.719712 0.226947 7.958680 +12: 887 A -0.516905 0.165390 8.699146 +12: 888 T 0.648675 0.118543 8.596214 +12: 889 T 0.788733 0.111358 9.242885 +12: 890 A 0.558315 0.122390 8.252996 +12: 891 G 0.213257 0.106676 7.738366 +12: 892 T 0.506814 0.111613 7.832068 +12: 893 T -0.082847 0.139399 7.504026 +12: 894 C -0.718765 0.154299 7.474746 +12: 895 C 1.219995 0.175911 7.363104 +12: 896 T 0.257746 0.179918 8.496624 +12: 897 C 1.541839 0.150549 9.064358 +12: 898 A 0.931403 0.169742 7.489445 +12: 899 T 0.527443 0.156622 8.163537 +12: 900 G -0.306690 0.124511 8.165930 +12: 901 T 0.696285 0.129516 7.877397 +12: 902 C 0.277346 0.107683 8.330823 +12: 903 C 0.999716 0.139050 7.982317 +12: 904 A 0.492418 0.172543 8.041596 +12: 905 T 1.413500 0.161476 9.054226 +12: 906 C 0.196023 0.242968 8.028413 +12: 907 T -0.818297 0.172723 8.410040 +12: 908 A 0.924136 0.144878 8.209350 +12: 909 T 0.485136 0.124072 7.973967 +12: 910 G -0.320418 0.120914 7.193840 +12: 911 A -0.184015 0.118072 8.249662 +12: 912 C -0.572857 0.099377 9.138751 +12: 913 C 0.258631 0.112806 9.424241 +12: 914 A 0.110542 0.128213 8.327389 +12: 915 C -0.632591 0.107078 8.020502 +12: 916 C -0.660664 0.142349 7.863237 +12: 917 T 1.258562 0.158728 8.410666 +12: 918 C 0.959553 0.115968 8.155495 +12: 919 A 1.806448 0.149483 8.726682 +12: 920 G 0.585313 0.214185 8.891140 +12: 921 T 0.637977 0.133747 8.932821 +12: 922 C -0.167980 0.132328 7.867389 +12: 923 T 0.385351 0.135030 8.694772 +12: 924 G 1.467777 0.122657 8.328823 +12: 925 T 1.156436 0.141427 7.031806 +12: 926 A 0.296050 0.161997 7.324454 12: 927 C -0.836543 0.154324 7.840771 12: 928 T 0.824620 0.159619 7.303352 12: 929 T 1.516867 0.156615 7.500090 @@ -528064,6 +528098,7 @@ 12: 575 T 0.531261 0.133317 7.705036 12: 576 T 1.240177 0.109625 8.080192 12: 577 A 1.233392 0.108421 8.062259 + 9/19 Test #11: test_squiggle_r94 ................ Passed 1.50 sec 12: 578 G 0.709108 0.106319 7.812791 12: 579 C 0.410596 0.087618 8.145637 12: 580 T 0.457344 0.099777 8.049680 @@ -528092,14 +528127,12 @@ 12: 603 G -0.572062 0.335164 12.230330 12: 604 C 0.561030 0.467363 9.792212 12: 605 T -0.235200 0.581865 6.671800 -10/19 Test #12: test_squiggle_r10 ................ Passed 4.69 sec -1: Test: Decoding of original and vectorised posterior same ...passed -3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } -3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG +10/19 Test #12: test_squiggle_r10 ................ Passed 1.61 sec +1: Test: Decoding same as Sloika ...passed 4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } +1: Test: Decoding of original and vectorised posterior same ...passed 1: Test: Decoding of original and vectorised posterior same with stay penalty ...passed 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.231445 over 12818 blocks (0.903513 per block) 10: block pos @@ -540921,10 +540954,6 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -11/19 Test #10: test_seqmappy .................... Passed 10.10 sec -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Decoding of original and vectorised posterior same with skip penalty ...passed 1: Suite: Test output of vectorised ELU unit 1: Test: Test input all zeros ...passed @@ -540967,24 +540996,30 @@ 1: Test: Test assumptions about bounds -- overlap ...scrappie_unittest: Blocks 3 and 4 don't overlap [3 , 3) -> [4 , 6) 1: 1: passed -4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } -4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -12/19 Test #4: test_rawrgrgr_r94_call ........... Passed 13.36 sec -3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } -3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT -13/19 Test #3: test_raw_call .................... Passed 13.56 sec +11/19 Test #10: test_seqmappy .................... Passed 4.48 sec 1: Test: Test mapping -- viterbi ...passed -1: Test: Test mapping -- forward ...passed 5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG 5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -14/19 Test #5: test_rawrgrgr_r941_call .......... Passed 15.53 sec +12/19 Test #5: test_rawrgrgr_r941_call .......... Passed 5.31 sec 6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 -2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } -2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } +1: Test: Test mapping -- forward ...passed +3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA +3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } +3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } +4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } +3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT +4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +13/19 Test #3: test_raw_call .................... Passed 6.81 sec +14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 6.82 sec +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- viterbi with path ...Viterbi mapping path 1: 0, 0, 0, 0, 0, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3 1: , 3, 4, 4, 4, 5, 5, 6, 6, 6, 6, 7, 7, 8, 8, 8, 8, 8, 9, 9, 9 @@ -541041,11 +541076,259 @@ 1: passed 1: Test: Test mapping -- forwards with full band equals forwards ...fwd = -87.884453 fwdB = -87.884453 1: passed -7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } -7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- Viterbi with full band equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed +1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi ...vit = -109.542824 vitB = -109.542824 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi ...vit = -109.542824 vitB = -109.542824 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 +1: passed +2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT +2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } +2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +15/19 Test #2: test_events_call ................. Passed 10.76 sec +1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } +6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA +6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } +6: TCTGGTTTTTTATTATGTTTTATCTTCCATA +16/19 Test #6: test_rawrgrgr_r10_call ........... Passed 11.41 sec +1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Suite: Functions on scrappie matrices +1: Test: Row normalisation edge case nr 8 ...passed +1: Test: Row normalisation edge case nr 9 ...passed +1: Test: Row normalisation edge case nr 10 ...passed +1: Test: Row normalisation edge case nr 11 ...passed +1: Suite: Test manipulating signal +1: Test: Normalise trimmed signal ...passed +1: Test: Trimming of raw signal ...passed +1: Suite: Test sequence-to-squiggle +1: Test: Short sequence to squiggle with network parameterisation ...# Squiggle with network parameters +1: 0 : -7.100222e-02 -1.052642e+00 1.414901e-01 +1: 1 : -7.592717e-01 -1.105536e+00 -4.640082e-01 +1: 2 : 6.517259e-01 -1.619675e+00 -1.508518e+00 +1: 3 : 7.911155e-01 -1.961320e+00 -1.867191e+00 +1: 4 : -4.636365e-02 -2.309864e+00 -2.113610e+00 +1: 5 : 3.253556e-01 -2.105663e+00 -2.100757e+00 +1: 6 : -2.154961e-01 -2.309796e+00 -2.132698e+00 +1: 7 : -3.571292e-02 -2.083405e+00 -2.042708e+00 +1: 8 : 1.599802e+00 -1.887870e+00 -2.025741e+00 +1: 9 : 8.314085e-01 -2.451915e+00 -2.454266e+00 +1: 10 : 6.323134e-01 -2.240801e+00 -2.265080e+00 +1: 11 : -6.508422e-01 -1.993278e+00 -2.375013e+00 +1: 12 : -5.089763e-01 -2.072061e+00 -2.146450e+00 +1: 13 : 8.102253e-01 -2.133760e+00 -2.323975e+00 +1: 14 : 8.833820e-02 -2.125255e+00 -2.124305e+00 +1: 15 : 1.071858e+00 -1.749681e+00 -2.241458e+00 +1: 16 : -2.662371e-01 -2.307614e+00 -2.348673e+00 +1: 17 : 2.526874e-01 -2.248703e+00 -2.320865e+00 +1: 18 : 9.335266e-01 -1.882824e+00 -2.341311e+00 +1: 19 : -3.805782e-01 -1.794182e+00 -2.349835e+00 +1: 20 : -1.473435e+00 -2.014107e+00 -2.131543e+00 +1: 21 : -1.468751e+00 -1.995398e+00 -2.432606e+00 +1: 22 : 5.183253e-01 -1.618705e+00 -2.231401e+00 +1: 23 : -1.178945e+00 -1.925591e+00 -2.094005e+00 +1: 24 : -4.925162e-01 -2.034039e+00 -2.007017e+00 +1: 25 : 7.687722e-01 -1.832321e+00 -2.014938e+00 +1: 26 : -3.909144e-01 -1.958265e+00 -1.838261e+00 +1: 27 : -9.566960e-01 -2.116315e+00 -1.882866e+00 +1: 28 : -1.504592e+00 -1.967939e+00 -1.786390e+00 +1: 29 : -1.584746e+00 -1.986520e+00 -2.088347e+00 +1: 30 : 7.169726e-01 -1.573472e+00 -1.709084e+00 +1: 31 : -5.171665e-01 -1.965511e+00 -1.954707e+00 +1: 32 : -9.571309e-01 -2.094756e+00 -1.757891e+00 +1: 33 : -1.530293e+00 -1.958263e+00 -1.948082e+00 +1: 34 : -7.154673e-01 -2.065584e+00 -2.075371e+00 +1: 35 : 1.340190e-01 -1.944091e+00 -1.914026e+00 +1: 36 : 1.544947e+00 -1.929502e+00 -2.150595e+00 +1: 37 : 7.528057e-01 -2.257131e+00 -1.926496e+00 +1: 38 : 2.406347e-01 -2.208216e+00 -2.034885e+00 +1: 39 : -5.725307e-01 -1.883131e+00 -2.108053e+00 +1: 40 : 1.791558e+00 -1.536994e+00 -2.167133e+00 +1: 41 : 1.642266e-01 -1.959490e+00 -2.100835e+00 +1: 42 : 1.738289e+00 -1.946394e+00 -2.119461e+00 +1: 43 : 9.157931e-01 -2.115188e+00 -2.043411e+00 +1: 44 : 1.088121e-01 -2.110393e+00 -2.055440e+00 +1: 45 : -2.463773e-01 -2.352781e+00 -2.026276e+00 +1: 46 : -2.968376e-01 -2.384610e+00 -1.996209e+00 +1: 47 : -2.164531e-01 -2.447103e+00 -1.998921e+00 +1: 48 : -1.930564e-01 -2.436937e+00 -2.000106e+00 +1: 49 : -1.830719e-01 -2.442657e+00 -2.056543e+00 +1: 50 : -1.657240e-01 -2.444262e+00 -2.075977e+00 +1: 51 : -1.614439e-01 -2.459783e+00 -2.059981e+00 +1: 52 : -1.486868e-01 -2.461916e+00 -2.067977e+00 +1: 53 : -1.427199e-01 -2.468782e+00 -2.054369e+00 +1: 54 : -1.372803e-01 -2.467317e+00 -2.054323e+00 +1: 55 : -1.326133e-01 -2.470593e+00 -2.053199e+00 +1: 56 : -1.302194e-01 -2.473777e+00 -2.056859e+00 +1: 57 : -1.261704e-01 -2.478879e+00 -2.061419e+00 +1: 58 : -1.243679e-01 -2.484729e+00 -2.086884e+00 +1: 59 : -1.173265e-01 -2.494588e+00 -2.133612e+00 +1: 60 : -1.214529e-01 -2.494635e+00 -2.183348e+00 +1: 61 : -1.293582e-01 -2.506257e+00 -2.171958e+00 +1: 62 : -1.191051e-01 -2.497786e+00 -2.145566e+00 +1: 63 : -1.195273e-01 -2.507583e+00 -2.283516e+00 +1: 64 : -1.336055e-01 -2.507490e+00 -2.176662e+00 +1: 65 : -1.368918e-01 -2.529756e+00 -2.196912e+00 +1: 66 : -1.233890e-01 -2.436671e+00 -1.958676e+00 +1: 67 : -1.247224e-01 -2.504339e+00 -2.117309e+00 +1: 68 : -1.032085e-01 -2.471079e+00 -2.012799e+00 +1: 69 : -2.071139e-01 -2.406339e+00 -1.964724e+00 +1: 70 : -2.314971e-01 -2.482945e+00 -2.155415e+00 +1: 71 : -2.581455e-01 -2.333455e+00 -1.886001e+00 +1: 72 : -6.401938e-01 -2.226488e+00 -2.015915e+00 +1: 73 : -7.949377e-01 -2.196288e+00 -2.162808e+00 +1: 74 : -8.079978e-01 -2.362137e+00 -2.147486e+00 +1: 75 : -1.083655e+00 -1.982127e+00 -2.269919e+00 +1: 76 : 1.037179e+00 -1.306082e+00 -2.118258e+00 +1: 77 : -8.516058e-01 -2.005135e+00 -2.194561e+00 +1: 78 : 1.016745e+00 -2.144597e+00 -1.807433e+00 +1: 79 : 7.776245e-01 -1.778889e+00 -1.912730e+00 +1: 80 : -7.908624e-01 -1.996992e+00 -2.312429e+00 +1: 81 : 1.090484e+00 -2.140350e+00 -2.126710e+00 +1: 82 : 1.015684e+00 -2.173901e+00 -2.125421e+00 +1: 83 : 1.260068e-01 -2.163344e+00 -1.811512e+00 +1: 84 : -1.337411e-01 -2.389348e+00 -1.904007e+00 +1: 85 : -3.989461e-01 -2.244048e+00 -1.749086e+00 +1: 86 : -9.542197e-01 -2.211177e+00 -1.788534e+00 +1: 87 : -9.941038e-01 -1.815204e+00 -1.902731e+00 +1: 88 : 2.104662e+00 -1.513922e+00 -2.045570e+00 +1: 89 : 9.999876e-01 -2.050895e+00 -2.244490e+00 +1: 90 : -7.696630e-02 -1.947020e+00 -2.157029e+00 +1: 91 : -9.479131e-01 -2.263503e+00 -2.090311e+00 +1: 92 : -1.952076e+00 -1.847213e+00 -2.148435e+00 +1: 93 : 1.132581e-01 -2.016356e+00 -2.078692e+00 +1: 94 : 2.403807e-01 -2.336333e+00 -2.143608e+00 +1: 95 : 1.057027e+00 -1.977065e+00 -2.303994e+00 +1: 96 : 3.843040e-01 -2.226576e+00 -2.423552e+00 +1: 97 : 7.154019e-01 -1.956273e+00 -2.181569e+00 +1: 98 : 2.062936e-01 -1.297073e+00 -2.801933e+00 +1: 99 : -4.569919e-01 -6.026990e-01 -2.507457e+00 +1: passed +1: Test: Short sequence to squiggle with transformed parameterisation ...# Squiggle with transformed parameters +1: 0 : -7.100222e-02 3.490146e-01 8.680637e-01 +1: 1 : -7.592717e-01 3.310335e-01 1.590436e+00 +1: 2 : 6.517259e-01 1.979630e-01 4.520027e+00 +1: 3 : 7.911155e-01 1.406727e-01 6.470098e+00 +1: 4 : -4.636365e-02 9.927477e-02 8.278069e+00 +1: 5 : 3.253556e-01 1.217649e-01 8.172357e+00 +1: 6 : -2.154961e-01 9.928147e-02 8.437597e+00 +1: 7 : -3.571292e-02 1.245055e-01 7.711463e+00 +1: 8 : 1.599802e+00 1.513939e-01 7.581724e+00 +1: 9 : 8.314085e-01 8.612853e-02 1.163788e+01 +1: 10 : 6.323134e-01 1.063733e-01 9.631895e+00 +1: 11 : -6.508422e-01 1.362481e-01 1.075115e+01 +1: 12 : -5.089763e-01 1.259260e-01 8.554433e+00 +1: 13 : 8.102253e-01 1.183913e-01 1.021620e+01 +1: 14 : 8.833820e-02 1.194025e-01 8.367081e+00 +1: 15 : 1.071858e+00 1.738294e-01 9.407034e+00 +1: 16 : -2.662371e-01 9.949841e-02 1.047167e+01 +1: 17 : 2.526874e-01 1.055360e-01 1.018448e+01 +1: 18 : 9.335266e-01 1.521598e-01 1.039486e+01 +1: 19 : -3.805782e-01 1.662634e-01 1.048384e+01 +1: 20 : -1.473435e+00 1.334395e-01 8.427864e+00 +1: 21 : -1.468751e+00 1.359596e-01 1.138852e+01 +1: 22 : 5.183253e-01 1.981551e-01 9.312908e+00 +1: 23 : -1.178945e+00 1.457896e-01 8.117357e+00 +1: 24 : -4.925162e-01 1.308061e-01 7.441085e+00 +1: 25 : 7.687722e-01 1.600417e-01 7.500263e+00 +1: 26 : -3.909144e-01 1.411030e-01 6.285598e+00 +1: 27 : -9.566960e-01 1.204748e-01 6.572314e+00 +1: 28 : -1.504592e+00 1.397446e-01 5.967870e+00 +1: 29 : -1.584746e+00 1.371720e-01 8.071564e+00 +1: 30 : 7.169726e-01 2.073242e-01 5.523900e+00 +1: 31 : -5.171665e-01 1.400842e-01 7.061852e+00 +1: 32 : -9.571309e-01 1.231003e-01 5.800190e+00 +1: 33 : -1.530293e+00 1.411033e-01 7.015221e+00 +1: 34 : -7.154673e-01 1.267443e-01 7.967502e+00 +1: 35 : 1.340190e-01 1.431173e-01 6.780335e+00 +1: 36 : 1.544947e+00 1.452205e-01 8.589970e+00 +1: 37 : 7.528057e-01 1.046503e-01 6.865414e+00 +1: 38 : 2.406347e-01 1.098965e-01 7.651375e+00 +1: 39 : -5.725307e-01 1.521131e-01 8.232198e+00 +1: 40 : 1.791558e+00 2.150264e-01 8.733207e+00 +1: 41 : 1.642266e-01 1.409303e-01 8.172995e+00 +1: 42 : 1.738289e+00 1.427880e-01 8.326647e+00 +1: 43 : 9.157931e-01 1.206106e-01 7.716887e+00 +1: 44 : 1.088121e-01 1.211904e-01 7.810273e+00 +1: 45 : -2.463773e-01 9.510433e-02 7.585787e+00 +1: 46 : -2.968376e-01 9.212491e-02 7.361097e+00 +1: 47 : -2.164531e-01 8.654394e-02 7.381091e+00 +1: 48 : -1.930564e-01 8.742826e-02 7.389842e+00 +1: 49 : -1.830719e-01 8.692955e-02 7.818890e+00 +1: 50 : -1.657240e-01 8.679014e-02 7.972329e+00 +1: 51 : -1.614439e-01 8.545349e-02 7.845820e+00 +1: 52 : -1.486868e-01 8.527137e-02 7.908805e+00 +1: 53 : -1.427199e-01 8.468797e-02 7.801917e+00 +1: 54 : -1.372803e-01 8.481213e-02 7.801556e+00 +1: 55 : -1.326133e-01 8.453473e-02 7.792791e+00 +1: 56 : -1.302194e-01 8.426598e-02 7.821364e+00 +1: 57 : -1.261704e-01 8.383711e-02 7.857110e+00 +1: 58 : -1.243679e-01 8.334816e-02 8.059758e+00 +1: 59 : -1.173265e-01 8.253042e-02 8.445313e+00 +1: 60 : -1.214529e-01 8.252656e-02 8.875977e+00 +1: 61 : -1.293582e-01 8.157299e-02 8.775450e+00 +1: 62 : -1.191051e-01 8.226693e-02 8.546880e+00 +1: 63 : -1.195273e-01 8.146491e-02 9.811115e+00 +1: 64 : -1.336055e-01 8.147245e-02 8.816829e+00 +1: 65 : -1.368918e-01 7.967844e-02 8.997186e+00 +1: 66 : -1.233890e-01 8.745151e-02 7.089930e+00 +1: 67 : -1.247224e-01 8.172958e-02 8.308747e+00 +1: 68 : -1.032085e-01 8.449367e-02 7.484239e+00 +1: 69 : -2.071139e-01 9.014467e-02 7.132941e+00 +1: 70 : -2.314971e-01 8.349697e-02 8.631474e+00 +1: 71 : -2.581455e-01 9.696014e-02 6.592949e+00 +1: 72 : -6.401938e-01 1.079067e-01 7.507593e+00 +1: 73 : -7.949377e-01 1.112152e-01 8.695518e+00 +1: 74 : -8.079978e-01 9.421863e-02 8.563301e+00 +1: 75 : -1.083655e+00 1.377758e-01 9.678620e+00 +1: 76 : 1.037179e+00 2.708792e-01 8.316633e+00 +1: 77 : -8.516058e-01 1.346421e-01 8.976064e+00 +1: 78 : 1.016745e+00 1.171152e-01 6.094779e+00 +1: 79 : 7.776245e-01 1.688257e-01 6.771546e+00 +1: 80 : -7.908624e-01 1.357430e-01 1.009893e+01 +1: 81 : 1.090484e+00 1.176136e-01 8.387229e+00 +1: 82 : 1.015684e+00 1.137331e-01 8.376424e+00 +1: 83 : 1.260068e-01 1.149402e-01 6.119696e+00 +1: 84 : -1.337411e-01 9.168947e-02 6.712739e+00 +1: 85 : -3.989461e-01 1.060285e-01 5.749343e+00 +1: 86 : -9.542197e-01 1.095716e-01 5.980679e+00 +1: 87 : -9.941038e-01 1.628047e-01 6.704179e+00 +1: 88 : 2.104662e+00 2.200452e-01 7.733565e+00 +1: 89 : 9.999876e-01 1.286197e-01 9.435606e+00 +1: 90 : -7.696630e-02 1.426987e-01 8.645411e+00 +1: 91 : -9.479131e-01 1.039856e-01 8.087430e+00 +1: 92 : -1.952076e+00 1.576759e-01 8.571430e+00 +1: 93 : 1.132581e-01 1.331397e-01 7.994008e+00 +1: 94 : 2.403807e-01 9.668154e-02 8.530156e+00 +1: 95 : 1.057027e+00 1.384751e-01 1.001410e+01 +1: 96 : 3.843040e-01 1.078972e-01 1.128587e+01 +1: 97 : 7.154019e-01 1.413844e-01 8.860198e+00 +1: 98 : 2.062936e-01 2.733308e-01 1.647646e+01 +1: 99 : -4.569919e-01 5.473324e-01 1.227368e+01 +1: passed +1: Suite: Miscellaneous utility functions +1: Test: Median of odd length array ...passed +1: Test: Median of even length array ...passed +1: +1: Run Summary: Type Total Ran Passed Failed Inactive +1: suites 11 11 n/a 0 0 +1: tests 71 71 71 0 0 +1: asserts 506 506 506 0 n/a +1: +1: Elapsed time = 9.007 seconds +17/19 Test #1: unittest ......................... Passed 11.98 sec 9: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa (score = -35302.484375) 9: idx signal pos base current sd dwell 9: 0 nan -1 N nan nan nan @@ -596718,8 +597001,6 @@ 9: 55667 -0.364225 4242 T -0.190009 0.084981 7.598405 9: 55668 -0.188857 4242 T -0.190009 0.084981 7.598405 9: 55669 0.013490 4243 T 0.154302 0.091978 7.684605 -1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi ...vit = -109.542824 vitB = -109.542824 -1: passed 9: 55670 -0.013490 4243 T 0.154302 0.091978 7.684605 9: 55671 0.121408 4243 T 0.154302 0.091978 7.684605 9: 55672 -0.026980 4243 T 0.154302 0.091978 7.684605 @@ -605348,6 +605629,12 @@ 9: 64295 nan -1 N nan nan nan 9: 64296 nan -1 N nan nan nan 9: 64297 nan -1 N nan nan nan +7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG +7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } +7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } +7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA +18/19 Test #7: test_rawrnnrf_r94_call ........... Passed 13.09 sec 9: 64298 nan -1 N nan nan nan 9: 64299 nan -1 N nan nan nan 9: 64300 nan -1 N nan nan nan @@ -605445,269 +605732,18 @@ 9: 64392 nan -1 N nan nan nan 9: 64393 nan -1 N nan nan nan 9: 64394 nan -1 N nan nan nan -15/19 Test #9: test_mappy ....................... Passed 23.05 sec -1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi ...vit = -109.542824 vitB = -109.542824 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 -1: passed -6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } -6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } -6: TCTGGTTTTTTATTATGTTTTATCTTCCATA -2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } -16/19 Test #6: test_rawrgrgr_r10_call ........... Passed 27.08 sec -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -17/19 Test #2: test_events_call ................. Passed 27.18 sec -1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Suite: Functions on scrappie matrices -1: Test: Row normalisation edge case nr 8 ...passed -1: Test: Row normalisation edge case nr 9 ...passed -1: Test: Row normalisation edge case nr 10 ...passed -1: Test: Row normalisation edge case nr 11 ...passed -1: Suite: Test manipulating signal -1: Test: Normalise trimmed signal ...passed -1: Test: Trimming of raw signal ...passed -1: Suite: Test sequence-to-squiggle -1: Test: Short sequence to squiggle with network parameterisation ...# Squiggle with network parameters -1: 0 : -7.100222e-02 -1.052642e+00 1.414901e-01 -1: 1 : -7.592717e-01 -1.105536e+00 -4.640082e-01 -1: 2 : 6.517259e-01 -1.619675e+00 -1.508518e+00 -1: 3 : 7.911155e-01 -1.961320e+00 -1.867191e+00 -1: 4 : -4.636365e-02 -2.309864e+00 -2.113610e+00 -1: 5 : 3.253556e-01 -2.105663e+00 -2.100757e+00 -1: 6 : -2.154961e-01 -2.309796e+00 -2.132698e+00 -1: 7 : -3.571292e-02 -2.083405e+00 -2.042708e+00 -1: 8 : 1.599802e+00 -1.887870e+00 -2.025741e+00 -1: 9 : 8.314085e-01 -2.451915e+00 -2.454266e+00 -1: 10 : 6.323134e-01 -2.240801e+00 -2.265080e+00 -1: 11 : -6.508422e-01 -1.993278e+00 -2.375013e+00 -1: 12 : -5.089763e-01 -2.072061e+00 -2.146450e+00 -1: 13 : 8.102253e-01 -2.133760e+00 -2.323975e+00 -1: 14 : 8.833820e-02 -2.125255e+00 -2.124305e+00 -1: 15 : 1.071858e+00 -1.749681e+00 -2.241458e+00 -1: 16 : -2.662371e-01 -2.307614e+00 -2.348673e+00 -1: 17 : 2.526874e-01 -2.248703e+00 -2.320865e+00 -1: 18 : 9.335266e-01 -1.882824e+00 -2.341311e+00 -1: 19 : -3.805782e-01 -1.794182e+00 -2.349835e+00 -1: 20 : -1.473435e+00 -2.014107e+00 -2.131543e+00 -1: 21 : -1.468751e+00 -1.995398e+00 -2.432606e+00 -1: 22 : 5.183253e-01 -1.618705e+00 -2.231401e+00 -1: 23 : -1.178945e+00 -1.925591e+00 -2.094005e+00 -1: 24 : -4.925162e-01 -2.034039e+00 -2.007017e+00 -1: 25 : 7.687722e-01 -1.832321e+00 -2.014938e+00 -1: 26 : -3.909144e-01 -1.958265e+00 -1.838261e+00 -1: 27 : -9.566960e-01 -2.116315e+00 -1.882866e+00 -1: 28 : -1.504592e+00 -1.967939e+00 -1.786390e+00 -1: 29 : -1.584746e+00 -1.986520e+00 -2.088347e+00 -1: 30 : 7.169726e-01 -1.573472e+00 -1.709084e+00 -1: 31 : -5.171665e-01 -1.965511e+00 -1.954707e+00 -1: 32 : -9.571309e-01 -2.094756e+00 -1.757891e+00 -1: 33 : -1.530293e+00 -1.958263e+00 -1.948082e+00 -1: 34 : -7.154673e-01 -2.065584e+00 -2.075371e+00 -1: 35 : 1.340190e-01 -1.944091e+00 -1.914026e+00 -1: 36 : 1.544947e+00 -1.929502e+00 -2.150595e+00 -1: 37 : 7.528057e-01 -2.257131e+00 -1.926496e+00 -1: 38 : 2.406347e-01 -2.208216e+00 -2.034885e+00 -1: 39 : -5.725307e-01 -1.883131e+00 -2.108053e+00 -1: 40 : 1.791558e+00 -1.536994e+00 -2.167133e+00 -1: 41 : 1.642266e-01 -1.959490e+00 -2.100835e+00 -1: 42 : 1.738289e+00 -1.946394e+00 -2.119461e+00 -1: 43 : 9.157931e-01 -2.115188e+00 -2.043411e+00 -1: 44 : 1.088121e-01 -2.110393e+00 -2.055440e+00 -1: 45 : -2.463773e-01 -2.352781e+00 -2.026276e+00 -1: 46 : -2.968376e-01 -2.384610e+00 -1.996209e+00 -1: 47 : -2.164531e-01 -2.447103e+00 -1.998921e+00 -1: 48 : -1.930564e-01 -2.436937e+00 -2.000106e+00 -1: 49 : -1.830719e-01 -2.442657e+00 -2.056543e+00 -1: 50 : -1.657240e-01 -2.444262e+00 -2.075977e+00 -1: 51 : -1.614439e-01 -2.459783e+00 -2.059981e+00 -1: 52 : -1.486868e-01 -2.461916e+00 -2.067977e+00 -1: 53 : -1.427199e-01 -2.468782e+00 -2.054369e+00 -1: 54 : -1.372803e-01 -2.467317e+00 -2.054323e+00 -1: 55 : -1.326133e-01 -2.470593e+00 -2.053199e+00 -1: 56 : -1.302194e-01 -2.473777e+00 -2.056859e+00 -1: 57 : -1.261704e-01 -2.478879e+00 -2.061419e+00 -1: 58 : -1.243679e-01 -2.484729e+00 -2.086884e+00 -1: 59 : -1.173265e-01 -2.494588e+00 -2.133612e+00 -1: 60 : -1.214529e-01 -2.494635e+00 -2.183348e+00 -1: 61 : -1.293582e-01 -2.506257e+00 -2.171958e+00 -1: 62 : -1.191051e-01 -2.497786e+00 -2.145566e+00 -1: 63 : -1.195273e-01 -2.507583e+00 -2.283516e+00 -1: 64 : -1.336055e-01 -2.507490e+00 -2.176662e+00 -1: 65 : -1.368918e-01 -2.529756e+00 -2.196912e+00 -1: 66 : -1.233890e-01 -2.436671e+00 -1.958676e+00 -1: 67 : -1.247224e-01 -2.504339e+00 -2.117309e+00 -1: 68 : -1.032085e-01 -2.471079e+00 -2.012799e+00 -1: 69 : -2.071139e-01 -2.406339e+00 -1.964724e+00 -1: 70 : -2.314971e-01 -2.482945e+00 -2.155415e+00 -1: 71 : -2.581455e-01 -2.333455e+00 -1.886001e+00 -1: 72 : -6.401938e-01 -2.226488e+00 -2.015915e+00 -1: 73 : -7.949377e-01 -2.196288e+00 -2.162808e+00 -1: 74 : -8.079978e-01 -2.362137e+00 -2.147486e+00 -1: 75 : -1.083655e+00 -1.982127e+00 -2.269919e+00 -1: 76 : 1.037179e+00 -1.306082e+00 -2.118258e+00 -1: 77 : -8.516058e-01 -2.005135e+00 -2.194561e+00 -1: 78 : 1.016745e+00 -2.144597e+00 -1.807433e+00 -1: 79 : 7.776245e-01 -1.778889e+00 -1.912730e+00 -1: 80 : -7.908624e-01 -1.996992e+00 -2.312429e+00 -1: 81 : 1.090484e+00 -2.140350e+00 -2.126710e+00 -1: 82 : 1.015684e+00 -2.173901e+00 -2.125421e+00 -1: 83 : 1.260068e-01 -2.163344e+00 -1.811512e+00 -1: 84 : -1.337411e-01 -2.389348e+00 -1.904007e+00 -1: 85 : -3.989461e-01 -2.244048e+00 -1.749086e+00 -1: 86 : -9.542197e-01 -2.211177e+00 -1.788534e+00 -1: 87 : -9.941038e-01 -1.815204e+00 -1.902731e+00 -1: 88 : 2.104662e+00 -1.513922e+00 -2.045570e+00 -1: 89 : 9.999876e-01 -2.050895e+00 -2.244490e+00 -1: 90 : -7.696630e-02 -1.947020e+00 -2.157029e+00 -1: 91 : -9.479131e-01 -2.263503e+00 -2.090311e+00 -1: 92 : -1.952076e+00 -1.847213e+00 -2.148435e+00 -1: 93 : 1.132581e-01 -2.016356e+00 -2.078692e+00 -1: 94 : 2.403807e-01 -2.336333e+00 -2.143608e+00 -1: 95 : 1.057027e+00 -1.977065e+00 -2.303994e+00 -1: 96 : 3.843040e-01 -2.226576e+00 -2.423552e+00 -1: 97 : 7.154019e-01 -1.956273e+00 -2.181569e+00 -1: 98 : 2.062936e-01 -1.297073e+00 -2.801933e+00 -1: 99 : -4.569919e-01 -6.026990e-01 -2.507457e+00 -1: passed -1: Test: Short sequence to squiggle with transformed parameterisation ...# Squiggle with transformed parameters -1: 0 : -7.100222e-02 3.490146e-01 8.680637e-01 -1: 1 : -7.592717e-01 3.310335e-01 1.590436e+00 -1: 2 : 6.517259e-01 1.979630e-01 4.520027e+00 -1: 3 : 7.911155e-01 1.406727e-01 6.470098e+00 -1: 4 : -4.636365e-02 9.927477e-02 8.278069e+00 -1: 5 : 3.253556e-01 1.217649e-01 8.172357e+00 -1: 6 : -2.154961e-01 9.928147e-02 8.437597e+00 -1: 7 : -3.571292e-02 1.245055e-01 7.711463e+00 -1: 8 : 1.599802e+00 1.513939e-01 7.581724e+00 -1: 9 : 8.314085e-01 8.612853e-02 1.163788e+01 -1: 10 : 6.323134e-01 1.063733e-01 9.631895e+00 -1: 11 : -6.508422e-01 1.362481e-01 1.075115e+01 -1: 12 : -5.089763e-01 1.259260e-01 8.554433e+00 -1: 13 : 8.102253e-01 1.183913e-01 1.021620e+01 -1: 14 : 8.833820e-02 1.194025e-01 8.367081e+00 -1: 15 : 1.071858e+00 1.738294e-01 9.407034e+00 -1: 16 : -2.662371e-01 9.949841e-02 1.047167e+01 -1: 17 : 2.526874e-01 1.055360e-01 1.018448e+01 -1: 18 : 9.335266e-01 1.521598e-01 1.039486e+01 -1: 19 : -3.805782e-01 1.662634e-01 1.048384e+01 -1: 20 : -1.473435e+00 1.334395e-01 8.427864e+00 -1: 21 : -1.468751e+00 1.359596e-01 1.138852e+01 -1: 22 : 5.183253e-01 1.981551e-01 9.312908e+00 -1: 23 : -1.178945e+00 1.457896e-01 8.117357e+00 -1: 24 : -4.925162e-01 1.308061e-01 7.441085e+00 -1: 25 : 7.687722e-01 1.600417e-01 7.500263e+00 -1: 26 : -3.909144e-01 1.411030e-01 6.285598e+00 -1: 27 : -9.566960e-01 1.204748e-01 6.572314e+00 -1: 28 : -1.504592e+00 1.397446e-01 5.967870e+00 -1: 29 : -1.584746e+00 1.371720e-01 8.071564e+00 -1: 30 : 7.169726e-01 2.073242e-01 5.523900e+00 -1: 31 : -5.171665e-01 1.400842e-01 7.061852e+00 -1: 32 : -9.571309e-01 1.231003e-01 5.800190e+00 -1: 33 : -1.530293e+00 1.411033e-01 7.015221e+00 -1: 34 : -7.154673e-01 1.267443e-01 7.967502e+00 -1: 35 : 1.340190e-01 1.431173e-01 6.780335e+00 -1: 36 : 1.544947e+00 1.452205e-01 8.589970e+00 -1: 37 : 7.528057e-01 1.046503e-01 6.865414e+00 -1: 38 : 2.406347e-01 1.098965e-01 7.651375e+00 -1: 39 : -5.725307e-01 1.521131e-01 8.232198e+00 -1: 40 : 1.791558e+00 2.150264e-01 8.733207e+00 -1: 41 : 1.642266e-01 1.409303e-01 8.172995e+00 -1: 42 : 1.738289e+00 1.427880e-01 8.326647e+00 -1: 43 : 9.157931e-01 1.206106e-01 7.716887e+00 -1: 44 : 1.088121e-01 1.211904e-01 7.810273e+00 -1: 45 : -2.463773e-01 9.510433e-02 7.585787e+00 -1: 46 : -2.968376e-01 9.212491e-02 7.361097e+00 -1: 47 : -2.164531e-01 8.654394e-02 7.381091e+00 -1: 48 : -1.930564e-01 8.742826e-02 7.389842e+00 -1: 49 : -1.830719e-01 8.692955e-02 7.818890e+00 -1: 50 : -1.657240e-01 8.679014e-02 7.972329e+00 -1: 51 : -1.614439e-01 8.545349e-02 7.845820e+00 -1: 52 : -1.486868e-01 8.527137e-02 7.908805e+00 -1: 53 : -1.427199e-01 8.468797e-02 7.801917e+00 -1: 54 : -1.372803e-01 8.481213e-02 7.801556e+00 -1: 55 : -1.326133e-01 8.453473e-02 7.792791e+00 -1: 56 : -1.302194e-01 8.426598e-02 7.821364e+00 -1: 57 : -1.261704e-01 8.383711e-02 7.857110e+00 -1: 58 : -1.243679e-01 8.334816e-02 8.059758e+00 -1: 59 : -1.173265e-01 8.253042e-02 8.445313e+00 -1: 60 : -1.214529e-01 8.252656e-02 8.875977e+00 -1: 61 : -1.293582e-01 8.157299e-02 8.775450e+00 -1: 62 : -1.191051e-01 8.226693e-02 8.546880e+00 -1: 63 : -1.195273e-01 8.146491e-02 9.811115e+00 -1: 64 : -1.336055e-01 8.147245e-02 8.816829e+00 -1: 65 : -1.368918e-01 7.967844e-02 8.997186e+00 -1: 66 : -1.233890e-01 8.745151e-02 7.089930e+00 -1: 67 : -1.247224e-01 8.172958e-02 8.308747e+00 -1: 68 : -1.032085e-01 8.449367e-02 7.484239e+00 -1: 69 : -2.071139e-01 9.014467e-02 7.132941e+00 -1: 70 : -2.314971e-01 8.349697e-02 8.631474e+00 -1: 71 : -2.581455e-01 9.696014e-02 6.592949e+00 -1: 72 : -6.401938e-01 1.079067e-01 7.507593e+00 -1: 73 : -7.949377e-01 1.112152e-01 8.695518e+00 -1: 74 : -8.079978e-01 9.421863e-02 8.563301e+00 -1: 75 : -1.083655e+00 1.377758e-01 9.678620e+00 -1: 76 : 1.037179e+00 2.708792e-01 8.316633e+00 -1: 77 : -8.516058e-01 1.346421e-01 8.976064e+00 -1: 78 : 1.016745e+00 1.171152e-01 6.094779e+00 -1: 79 : 7.776245e-01 1.688257e-01 6.771546e+00 -1: 80 : -7.908624e-01 1.357430e-01 1.009893e+01 -1: 81 : 1.090484e+00 1.176136e-01 8.387229e+00 -1: 82 : 1.015684e+00 1.137331e-01 8.376424e+00 -1: 83 : 1.260068e-01 1.149402e-01 6.119696e+00 -1: 84 : -1.337411e-01 9.168947e-02 6.712739e+00 -1: 85 : -3.989461e-01 1.060285e-01 5.749343e+00 -1: 86 : -9.542197e-01 1.095716e-01 5.980679e+00 -1: 87 : -9.941038e-01 1.628047e-01 6.704179e+00 -1: 88 : 2.104662e+00 2.200452e-01 7.733565e+00 -1: 89 : 9.999876e-01 1.286197e-01 9.435606e+00 -1: 90 : -7.696630e-02 1.426987e-01 8.645411e+00 -1: 91 : -9.479131e-01 1.039856e-01 8.087430e+00 -1: 92 : -1.952076e+00 1.576759e-01 8.571430e+00 -1: 93 : 1.132581e-01 1.331397e-01 7.994008e+00 -1: 94 : 2.403807e-01 9.668154e-02 8.530156e+00 -1: 95 : 1.057027e+00 1.384751e-01 1.001410e+01 -1: 96 : 3.843040e-01 1.078972e-01 1.128587e+01 -1: 97 : 7.154019e-01 1.413844e-01 8.860198e+00 -1: 98 : 2.062936e-01 2.733308e-01 1.647646e+01 -1: 99 : -4.569919e-01 5.473324e-01 1.227368e+01 -1: passed -1: Suite: Miscellaneous utility functions -1: Test: Median of odd length array ...passed -1: Test: Median of even length array ...passed -1: -1: Run Summary: Type Total Ran Passed Failed Inactive -1: suites 11 11 n/a 0 0 -1: tests 71 71 71 0 0 -1: asserts 506 506 506 0 n/a -1: -1: Elapsed time = 10.881 seconds -18/19 Test #1: unittest ......................... Passed 32.07 sec -7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } -7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 32.12 sec +19/19 Test #9: test_mappy ....................... Passed 13.08 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 32.18 sec +Total Test time (real) = 13.19 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' - rm -fr -- /tmp/dh-xdg-rundir-6VKgN87a + rm -fr -- /tmp/dh-xdg-rundir-c8OpbItB dh_auto_test --builddirectory build_plain - cd build_plain && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + cd build_plain && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_plain' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_plain/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_plain/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_plain @@ -605867,31 +605903,6 @@ 1: Test: Simple convolution, antisymmetric filter length 3 ...passed 1: Test: Scrappie convolution, antisymmetric filter length 3 ...passed 1: Suite: Test decoding -14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies -14: Limited Research Algorithms group. -14: -14: Basic usage: -14: * scrappie events Base call from event based data. -14: * scrappie help Print general help or help about specific Scrappie command. -14: * scrappie licence Print licensing information. -14: * scrappie raw Base call directly from raw signal. -14: * scrappie version Print version information. -14: * scrappie squiggle Create approximate squiggle for sequence -14: * scrappie mappy Map signal to approximate squiggle -14: * scrappie seqmappy Map signal to sequence via basecall posteriors -14: * scrappie event_table Output table of events for read -14: -14: This project began life as a proof (bet) that a base caller could be written -14: in a low level language in under 8 hours. Some of the poor and just plain odd -14: design decisions, along with the lack of documentation, are a result of its -14: inception. In keeping with ONT's fish naming policy, the project was originally -14: called Crappie. -14: -14: Scrappie's purpose is to demonstrate the next generation of base calling and, as -14: such, may change drastically between releases and breaks backwards -14: compatibility. Newer versions may drop support of current features or change their -14: behaviour. - 1/19 Test #14: test_help ........................ Passed 0.15 sec 8: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 8: #event start mean stdv dwell 8: 0 0 74.501198 0.733543 4 @@ -608417,41 +608428,6 @@ 8: 2520 12937 103.866432 2.695301 5 8: 2521 12942 100.543213 3.738916 7 8: 2522 12949 84.950195 0.776234 3 -15: Usage: events [OPTION...] fast5 [fast5 ...] -15: Scrappie basecaller -- basecall via events -15: -15: -#, --threads=nparallel Number of reads to call in parallel -15: --dump=filename Dump annotated events to HDF5 file -15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths -15: -f, --format=format Format to output reads (FASTA or SAM) -15: --hdf5-chunk=size Chunk size for HDF5 output -15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -15: 1: quickest, 9: best) -15: --licence, --license Print licensing information -15: --local=penalty Penalty for local basecalling -15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -15: -m, --min_prob=probability Minimum bound on probability of match -15: -o, --output=filename Write to file rather than stdout -15: -p, --prefix=string Prefix to append to name of each read -15: --segmentation=chunk:percentile -15: Chunk size and percentile for variance based -15: segmentation -15: --slip, --no-slip Use slipping -15: -s, --skip=penalty Penalty for skipping a base -15: --temperature1=factor Temperature for softmax weights -15: --temperature2=factor Temperature for softmax bias -15: -t, --trim=start:end Number of events to trim, as start:end -15: --uuid, --no-uuid Output UUID -15: -y, --stay=penalty Penalty for staying -15: -?, --help Give this help list -15: --usage Give a short usage message -15: -V, --version Print program version -15: -15: Mandatory or optional arguments to long options are also mandatory or optional -15: for any corresponding short options. -15: -15: Report bugs to . - 2/19 Test #15: test_help_events ................. Passed 0.27 sec 8: 2523 12952 83.067215 4.001403 4 8: 2524 12956 91.147049 5.042205 8 8: 2525 12964 65.935181 0.919887 3 @@ -614325,6 +614301,55 @@ 8: 8393 43501 81.770737 1.140304 6 8: 8394 43507 84.024139 0.380173 3 8: 8395 43510 92.309250 2.199521 5 +16: Usage: event_table [OPTION...] fast5 [fast5 ...] +16: Scrappie basecaller -- basecall via events +16: +16: --licence, --license Print licensing information +16: -o, --output=filename Write to file rather than stdout +16: --segmentation=chunk:percentile +16: Chunk size and percentile for variance based +16: segmentation +16: -t, --trim=start:end Number of events to trim, as start:end +16: -?, --help Give this help list +16: --usage Give a short usage message +16: -V, --version Print program version +16: +16: Mandatory or optional arguments to long options are also mandatory or optional +16: for any corresponding short options. +16: +16: Report bugs to . +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. +18: Usage: squiggle [OPTION...] fasta [fasta ...] +18: Scrappie squiggler +18: +18: --licence, --license Print licensing information +18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +18: -m, --model=name Squiggle model to use: "squiggle_r94", +18: "squiggle_r94_rna", "squiggle_r10" +18: -o, --output=filename Write to file rather than stdout +18: -p, --prefix=string Prefix to append to name of each read +18: --rescale, --no-rescale Rescale network output +18: -?, --help Give this help list +18: --usage Give a short usage message +18: -V, --version Print program version +18: +18: Mandatory or optional arguments to long options are also mandatory or optional +18: for any corresponding short options. +18: +18: Report bugs to . + 1/19 Test #13: test_licence ..................... Passed 0.18 sec + 2/19 Test #16: test_help_event_table ............ Passed 0.16 sec + 3/19 Test #18: test_help_squiggle ............... Passed 0.15 sec 8: 8396 43515 66.342644 3.569210 5 8: 8397 43520 67.324265 0.547990 4 8: 8398 43524 66.722328 1.595281 8 @@ -616603,6 +616628,30 @@ 8: 10671 55302 83.761757 1.415939 8 8: 10672 55310 86.271370 1.342478 5 8: 10673 55315 85.011932 0.453394 4 +14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies +14: Limited Research Algorithms group. +14: +14: Basic usage: +14: * scrappie events Base call from event based data. +14: * scrappie help Print general help or help about specific Scrappie command. +14: * scrappie licence Print licensing information. +14: * scrappie raw Base call directly from raw signal. +14: * scrappie version Print version information. +14: * scrappie squiggle Create approximate squiggle for sequence +14: * scrappie mappy Map signal to approximate squiggle +14: * scrappie seqmappy Map signal to sequence via basecall posteriors +14: * scrappie event_table Output table of events for read +14: +14: This project began life as a proof (bet) that a base caller could be written +14: in a low level language in under 8 hours. Some of the poor and just plain odd +14: design decisions, along with the lack of documentation, are a result of its +14: inception. In keeping with ONT's fish naming policy, the project was originally +14: called Crappie. +14: +14: Scrappie's purpose is to demonstrate the next generation of base calling and, as +14: such, may change drastically between releases and breaks backwards +14: compatibility. Newer versions may drop support of current features or change their +14: behaviour. 8: 10674 55319 86.910347 0.800695 4 8: 10675 55323 85.011925 1.393519 7 8: 10676 55330 90.259583 1.739505 3 @@ -617717,6 +617766,7 @@ 8: 11785 60978 76.471642 0.547990 9 8: 11786 60987 74.640106 0.916696 4 8: 11787 60991 87.790100 0.680719 4 + 4/19 Test #14: test_help ........................ Passed 0.21 sec 8: 11788 60995 83.715454 1.737539 11 8: 11789 61006 72.417572 0.659590 3 8: 11790 61009 86.641792 1.560154 5 @@ -618213,34 +618263,6 @@ 8: 12281 63502 52.896313 1.456398 5 8: 12282 63507 44.932232 1.031901 5 8: 12283 63512 43.956787 0.174693 3 -16: Usage: event_table [OPTION...] fast5 [fast5 ...] -16: Scrappie basecaller -- basecall via events -16: -16: --licence, --license Print licensing information -16: -o, --output=filename Write to file rather than stdout -16: --segmentation=chunk:percentile -16: Chunk size and percentile for variance based -16: segmentation -16: -t, --trim=start:end Number of events to trim, as start:end -16: -?, --help Give this help list -16: --usage Give a short usage message -16: -V, --version Print program version -16: -16: Mandatory or optional arguments to long options are also mandatory or optional -16: for any corresponding short options. -16: -16: Report bugs to . -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. 17: Usage: raw [OPTION...] fast5 [fast5 ...] 17: Scrappie basecaller -- basecall from raw signal 17: @@ -618278,30 +618300,7 @@ 17: for any corresponding short options. 17: 17: Report bugs to . -18: Usage: squiggle [OPTION...] fasta [fasta ...] -18: Scrappie squiggler -18: -18: --licence, --license Print licensing information -18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -18: -m, --model=name Squiggle model to use: "squiggle_r94", -18: "squiggle_r94_rna", "squiggle_r10" -18: -o, --output=filename Write to file rather than stdout -18: -p, --prefix=string Prefix to append to name of each read -18: --rescale, --no-rescale Rescale network output -18: -?, --help Give this help list -18: --usage Give a short usage message -18: -V, --version Print program version -18: -18: Mandatory or optional arguments to long options are also mandatory or optional -18: for any corresponding short options. -18: -18: Report bugs to . -19: scrappie 1.4.0- - 3/19 Test #13: test_licence ..................... Passed 0.54 sec - 4/19 Test #16: test_help_event_table ............ Passed 0.50 sec - 5/19 Test #17: test_help_raw .................... Passed 0.47 sec - 6/19 Test #18: test_help_squiggle ............... Passed 0.42 sec - 7/19 Test #19: test_version ..................... Passed 0.39 sec + 5/19 Test #17: test_help_raw .................... Passed 0.20 sec 8: 12284 63515 45.129791 0.380494 3 8: 12285 63518 46.279644 0.855959 8 8: 12286 63526 44.450684 0.991664 3 @@ -618415,7 +618414,45 @@ 8: 12394 64075 54.637299 0.944376 3 8: 12395 64078 52.637016 1.520129 5 8: 12396 64083 61.066772 1.247263 7 - 8/19 Test #8: test_event_table ................. Passed 0.63 sec +15: Usage: events [OPTION...] fast5 [fast5 ...] +15: Scrappie basecaller -- basecall via events +15: +15: -#, --threads=nparallel Number of reads to call in parallel +15: --dump=filename Dump annotated events to HDF5 file +15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths +15: -f, --format=format Format to output reads (FASTA or SAM) +15: --hdf5-chunk=size Chunk size for HDF5 output +15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +15: 1: quickest, 9: best) +15: --licence, --license Print licensing information +15: --local=penalty Penalty for local basecalling +15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +15: -m, --min_prob=probability Minimum bound on probability of match +15: -o, --output=filename Write to file rather than stdout +15: -p, --prefix=string Prefix to append to name of each read +15: --segmentation=chunk:percentile +15: Chunk size and percentile for variance based +15: segmentation +15: --slip, --no-slip Use slipping +15: -s, --skip=penalty Penalty for skipping a base +15: --temperature1=factor Temperature for softmax weights +15: --temperature2=factor Temperature for softmax bias +15: -t, --trim=start:end Number of events to trim, as start:end +15: --uuid, --no-uuid Output UUID +15: -y, --stay=penalty Penalty for staying +15: -?, --help Give this help list +15: --usage Give a short usage message +15: -V, --version Print program version +15: +15: Mandatory or optional arguments to long options are also mandatory or optional +15: for any corresponding short options. +15: +15: Report bugs to . + 6/19 Test #8: test_event_table ................. Passed 0.37 sec + 7/19 Test #15: test_help_events ................. Passed 0.26 sec +19: scrappie 1.4.0- + 8/19 Test #19: test_version ..................... Passed 0.27 sec +1: Test: Decoding same as Sloika ...passed 12: #one 12: pos base current sd dwell 12: 0 T 0.273674 0.499834 0.755774 @@ -623464,6 +623501,988 @@ 11: 2515 A -0.423683 0.118824 7.145892 11: 2516 T 1.096181 0.195750 7.263324 11: 2517 G -0.216749 0.161250 7.357249 +12: 2526 T 1.226972 0.187758 8.868389 +12: 2527 A 0.326663 0.163646 8.637415 +12: 2528 A 0.776825 0.159115 7.422452 +12: 2529 A -0.622245 0.205832 7.580650 +12: 2530 T -1.265517 0.217479 8.306485 +12: 2531 A 0.628805 0.121661 8.164207 +12: 2532 T 0.769511 0.098043 8.199687 +12: 2533 A 0.350800 0.127996 8.210618 +12: 2534 A -0.141438 0.109709 8.702918 +12: 2535 T 0.242651 0.102963 8.906513 +12: 2536 T 0.491109 0.120859 8.978339 +12: 2537 C -0.153347 0.134612 9.338113 +12: 2538 C 1.066516 0.127692 8.513339 +12: 2539 T 0.594936 0.148811 7.963649 +12: 2540 T -0.379407 0.161337 6.392164 +12: 2541 A -0.659223 0.108110 7.778077 +12: 2542 T -0.576142 0.108834 6.999051 +12: 2543 C -0.843715 0.130818 6.598724 +12: 2544 A -1.437682 0.135279 7.597930 +12: 2545 A -1.514829 0.124043 8.375982 +12: 2546 G -1.103884 0.122612 7.674520 +12: 2547 G -0.764696 0.161371 7.748152 +12: 2548 G 0.175790 0.134796 8.036445 +12: 2549 A -0.004486 0.092964 7.420146 +12: 2550 A -0.341161 0.127355 7.378166 +12: 2551 A -0.928757 0.137549 7.299687 +12: 2552 C -1.420619 0.184846 7.187764 +12: 2553 T 0.516770 0.172238 7.991004 +12: 2554 T 1.209236 0.132782 8.721268 +12: 2555 C 1.472676 0.122889 8.505735 +12: 2556 A 1.316731 0.137611 7.890669 +12: 2557 T -0.069831 0.213390 6.807758 +12: 2558 T -0.617375 0.194515 7.804194 +12: 2559 T 1.544968 0.190930 7.108366 +12: 2560 T 0.668908 0.243240 7.406156 +12: 2561 A -0.883512 0.149727 8.009659 +12: 2562 A -1.634685 0.122577 8.049137 +12: 2563 T -1.398357 0.110037 8.988862 +12: 2564 A -0.786857 0.100302 8.384510 +12: 2565 G -0.620314 0.109937 8.754931 +12: 2566 A -1.176952 0.137542 8.881434 +12: 2567 A -0.128371 0.133560 8.570903 +12: 2568 A -0.713346 0.138379 8.649867 +12: 2569 G 0.599217 0.158987 8.227661 +12: 2570 G -0.482809 0.249785 7.666263 +12: 2571 T -1.283436 0.205650 10.129151 +12: 2572 A 0.217471 0.195993 10.924161 +12: 2573 T -0.527437 0.183608 10.333318 +12: 2574 G 0.289440 0.216070 11.379429 +12: 2575 A -0.470523 0.228475 10.162048 +12: 2576 C -1.309896 0.346120 11.664120 +12: 2577 A 0.710910 0.445684 9.001451 +12: 2578 C -0.044387 0.550503 7.497941 +12: #two +12: pos base current sd dwell +12: 0 C 0.683936 0.292595 0.787175 +12: 1 T 0.285399 0.223970 1.363220 +12: 2 T 0.233159 0.229233 1.925318 +12: 3 T -0.284285 0.202461 3.632945 +12: 4 T 1.513357 0.179336 6.751537 +12: 5 C 0.495119 0.192543 6.420651 +12: 6 C 0.220424 0.123044 7.956814 +12: 7 A -0.270081 0.148077 7.616370 +12: 8 T 0.737105 0.154406 7.992534 +12: 9 G -0.257618 0.139907 7.938873 +12: 10 C 0.238270 0.144361 7.577223 +12: 11 A -0.565925 0.132718 7.805387 +12: 12 C 0.186974 0.157118 8.225278 +12: 13 A -0.566944 0.119921 8.531586 +12: 14 C -0.681718 0.155401 7.449421 +12: 15 A 1.114625 0.177478 8.406658 +12: 16 C 0.209275 0.178806 8.876794 +12: 17 A 0.182029 0.144124 7.857810 +12: 18 G -0.634468 0.142029 7.148503 +12: 19 T -0.808495 0.109849 7.214585 +12: 20 G -0.660106 0.130614 7.163760 +12: 21 C 0.377924 0.144487 6.444206 +12: 22 A 1.238849 0.168886 6.598902 +12: 23 A 0.372003 0.187160 7.691326 +12: 24 G 0.590835 0.115245 7.357205 +12: 25 C 0.507378 0.121377 7.407406 +12: 26 T -0.341736 0.206346 8.269124 +12: 27 G -1.183804 0.146394 8.195521 +12: 28 T -0.588579 0.236768 7.109519 +12: 29 T 1.548155 0.187290 8.619592 +12: 30 G 0.935080 0.159360 7.153718 +12: 31 A 0.080601 0.119322 8.334003 +12: 32 A 0.135833 0.144603 8.254804 +12: 33 T -0.689822 0.163885 7.153272 +12: 34 C -0.442044 0.116712 9.222482 +12: 35 C 0.006143 0.122890 7.686490 +12: 36 T -0.439292 0.176346 7.135783 +12: 37 G 1.580827 0.138243 8.895194 +12: 38 C 1.068271 0.129942 8.509816 +12: 39 C 0.509839 0.125859 8.376747 +12: 40 A 1.481592 0.150149 8.551979 +12: 41 T 0.501036 0.222623 8.407757 +12: 42 T -0.670658 0.131562 10.968962 +12: 43 C -0.698923 0.113698 9.856374 +12: 44 T -0.555862 0.113812 8.696571 +12: 45 G -0.455272 0.135835 8.416758 +12: 46 G 1.250371 0.149751 9.457069 +12: 47 G 0.623332 0.145319 8.499714 +12: 48 G 0.695963 0.143216 7.960942 +12: 49 G -0.249940 0.243618 7.950039 +12: 50 T -1.661689 0.142153 9.528579 +12: 51 C -1.203690 0.122606 8.463405 +12: 52 T -0.716455 0.128440 7.035435 +12: 53 G -0.759977 0.142399 8.437973 +12: 54 G -0.802840 0.157061 7.802762 +12: 55 A 0.680831 0.159626 7.500440 +12: 56 G -0.134592 0.260248 6.134130 +12: 57 G -1.229793 0.165220 8.214905 +12: 58 A 0.003239 0.172415 7.446199 +12: 59 T -0.742153 0.157955 7.368556 +12: 60 G -1.060039 0.135540 8.245991 +12: 61 G 0.171675 0.129316 7.841066 +12: 62 T 0.125342 0.112360 6.897592 +12: 63 G 0.160828 0.112461 7.940848 +12: 64 G 0.412585 0.131637 7.555494 +12: 65 C -0.240946 0.148206 7.376078 +12: 66 C 0.201810 0.116791 8.685833 +12: 67 C 0.887716 0.145968 7.398972 +12: 68 T 0.499432 0.140390 7.761889 +12: 69 C 1.649669 0.170317 7.459800 +12: 70 T 0.892544 0.179992 6.799202 +12: 71 T -0.048452 0.168846 7.006836 +12: 72 C 0.843768 0.133001 8.420102 +12: 73 T 1.146918 0.126127 7.266869 +12: 74 C 1.701908 0.162262 7.973849 +12: 75 A 0.722689 0.272392 6.926387 +12: 76 C -0.422857 0.177529 7.769481 +12: 77 T 0.652839 0.153194 8.006291 +12: 78 T 1.652439 0.156209 8.763206 +12: 79 A 1.067100 0.143712 8.682311 +12: 80 G 0.313558 0.129372 8.313437 +12: 81 C -0.186521 0.119165 7.979121 +12: 82 T -0.849993 0.130804 8.510041 +12: 83 C 0.230951 0.135218 7.679952 +12: 84 C 1.145062 0.130036 7.886291 +12: 85 C 0.615303 0.202166 7.516761 +12: 86 A -0.296616 0.127621 8.316122 +12: 87 C -0.800418 0.133430 7.996579 +12: 88 T 0.446001 0.134251 7.482554 +12: 89 A -0.082318 0.126296 7.080921 +12: 90 G -0.367767 0.136267 8.172821 +12: 91 G 0.886769 0.159156 8.788610 +12: 92 C -0.150809 0.152867 8.720862 +12: 93 A -0.026322 0.113684 9.718911 +12: 94 G 0.280566 0.112469 8.491561 +12: 95 T 0.405291 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T -0.681843 0.160025 6.497253 +12: 849 A 0.912011 0.193077 7.538339 +12: 850 G -0.295676 0.148624 7.810137 +12: 851 A 0.623740 0.172603 7.462111 +12: 852 G -0.741735 0.229331 7.181033 +12: 853 C -1.462626 0.150396 9.049275 +12: 854 A -0.192243 0.161587 7.037226 +12: 855 T -1.026400 0.135025 7.107962 +12: 856 A -1.304114 0.110389 6.801595 +12: 857 A -1.262507 0.115377 7.612866 +12: 858 C -1.195643 0.109655 7.481505 +12: 859 A -1.002681 0.115011 7.333045 +12: 860 A -0.774107 0.149281 6.822145 +12: 861 A 0.795120 0.155105 8.467321 +12: 862 G 0.045140 0.151132 7.223375 +12: 863 A -0.887827 0.129705 7.501885 +12: 864 G -0.387842 0.124788 6.927849 +12: 865 T -0.064752 0.103268 7.218560 +12: 866 C 0.480060 0.110928 7.963939 +12: 867 A 0.614648 0.105091 7.352736 +12: 868 C 1.202985 0.130696 7.944008 +12: 869 T 0.288374 0.204837 6.958231 +12: 870 T 1.409679 0.144649 7.267876 +12: 871 T 1.535589 0.121553 8.117357 +12: 872 T 0.986204 0.152978 8.163510 +12: 873 A 0.503143 0.110818 7.939424 +12: 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G -0.306690 0.124511 8.165930 +12: 901 T 0.696285 0.129516 7.877397 +12: 902 C 0.277346 0.107683 8.330823 +12: 903 C 0.999716 0.139050 7.982317 +12: 904 A 0.492418 0.172543 8.041596 +12: 905 T 1.413500 0.161476 9.054226 +12: 906 C 0.196023 0.242968 8.028413 +12: 907 T -0.818297 0.172723 8.410040 +12: 908 A 0.924136 0.144878 8.209350 +12: 909 T 0.485136 0.124072 7.973967 +12: 910 G -0.320418 0.120914 7.193840 +12: 911 A -0.184015 0.118072 8.249662 +12: 912 C -0.572857 0.099377 9.138751 +12: 913 C 0.258631 0.112806 9.424241 +12: 914 A 0.110542 0.128213 8.327389 +12: 915 C -0.632591 0.107078 8.020502 +12: 916 C -0.660664 0.142349 7.863237 +12: 917 T 1.258562 0.158728 8.410666 +12: 918 C 0.959553 0.115968 8.155495 +12: 919 A 1.806448 0.149483 8.726682 +12: 920 G 0.585313 0.214185 8.891140 +12: 921 T 0.637977 0.133747 8.932821 +12: 922 C -0.167980 0.132328 7.867389 +12: 923 T 0.385351 0.135030 8.694772 +12: 924 G 1.467777 0.122657 8.328823 +12: 925 T 1.156436 0.141427 7.031806 +12: 926 A 0.296050 0.161997 7.324454 11: 2518 A -0.915567 0.121125 7.266725 11: 2519 A -1.104245 0.093258 8.343531 11: 2520 A -0.859199 0.119295 5.980935 @@ -624443,7 +625462,6 @@ 11: 913 C 0.255411 0.100457 7.447389 11: 914 A 0.078750 0.085782 8.936720 11: 915 C 0.690872 0.107165 7.216995 -1: Test: Decoding same as Sloika ...passed 11: 916 C 0.063825 0.125462 7.512218 11: 917 T 1.840280 0.175977 7.643032 11: 918 C 0.707252 0.141712 6.249581 @@ -625426,988 +626444,6 @@ 11: 925 A -0.018874 0.089922 6.853956 11: 926 C 0.314718 0.107410 7.636093 11: 927 T 0.989649 0.215371 8.224966 -12: 2526 T 1.226972 0.187758 8.868389 -12: 2527 A 0.326663 0.163646 8.637415 -12: 2528 A 0.776825 0.159115 7.422452 -12: 2529 A -0.622245 0.205832 7.580650 -12: 2530 T -1.265517 0.217479 8.306485 -12: 2531 A 0.628805 0.121661 8.164207 -12: 2532 T 0.769511 0.098043 8.199687 -12: 2533 A 0.350800 0.127996 8.210618 -12: 2534 A -0.141438 0.109709 8.702918 -12: 2535 T 0.242651 0.102963 8.906513 -12: 2536 T 0.491109 0.120859 8.978339 -12: 2537 C -0.153347 0.134612 9.338113 -12: 2538 C 1.066516 0.127692 8.513339 -12: 2539 T 0.594936 0.148811 7.963649 -12: 2540 T -0.379407 0.161337 6.392164 -12: 2541 A -0.659223 0.108110 7.778077 -12: 2542 T -0.576142 0.108834 6.999051 -12: 2543 C -0.843715 0.130818 6.598724 -12: 2544 A -1.437682 0.135279 7.597930 -12: 2545 A -1.514829 0.124043 8.375982 -12: 2546 G -1.103884 0.122612 7.674520 -12: 2547 G -0.764696 0.161371 7.748152 -12: 2548 G 0.175790 0.134796 8.036445 -12: 2549 A -0.004486 0.092964 7.420146 -12: 2550 A -0.341161 0.127355 7.378166 -12: 2551 A -0.928757 0.137549 7.299687 -12: 2552 C -1.420619 0.184846 7.187764 -12: 2553 T 0.516770 0.172238 7.991004 -12: 2554 T 1.209236 0.132782 8.721268 -12: 2555 C 1.472676 0.122889 8.505735 -12: 2556 A 1.316731 0.137611 7.890669 -12: 2557 T -0.069831 0.213390 6.807758 -12: 2558 T -0.617375 0.194515 7.804194 -12: 2559 T 1.544968 0.190930 7.108366 -12: 2560 T 0.668908 0.243240 7.406156 -12: 2561 A -0.883512 0.149727 8.009659 -12: 2562 A -1.634685 0.122577 8.049137 -12: 2563 T -1.398357 0.110037 8.988862 -12: 2564 A -0.786857 0.100302 8.384510 -12: 2565 G -0.620314 0.109937 8.754931 -12: 2566 A -1.176952 0.137542 8.881434 -12: 2567 A -0.128371 0.133560 8.570903 -12: 2568 A -0.713346 0.138379 8.649867 -12: 2569 G 0.599217 0.158987 8.227661 -12: 2570 G -0.482809 0.249785 7.666263 -12: 2571 T -1.283436 0.205650 10.129151 -12: 2572 A 0.217471 0.195993 10.924161 -12: 2573 T -0.527437 0.183608 10.333318 -12: 2574 G 0.289440 0.216070 11.379429 -12: 2575 A -0.470523 0.228475 10.162048 -12: 2576 C -1.309896 0.346120 11.664120 -12: 2577 A 0.710910 0.445684 9.001451 -12: 2578 C -0.044387 0.550503 7.497941 -12: #two -12: pos base current sd dwell -12: 0 C 0.683936 0.292595 0.787175 -12: 1 T 0.285399 0.223970 1.363220 -12: 2 T 0.233159 0.229233 1.925318 -12: 3 T -0.284285 0.202461 3.632945 -12: 4 T 1.513357 0.179336 6.751537 -12: 5 C 0.495119 0.192543 6.420651 -12: 6 C 0.220424 0.123044 7.956814 -12: 7 A -0.270081 0.148077 7.616370 -12: 8 T 0.737105 0.154406 7.992534 -12: 9 G -0.257618 0.139907 7.938873 -12: 10 C 0.238270 0.144361 7.577223 -12: 11 A -0.565925 0.132718 7.805387 -12: 12 C 0.186974 0.157118 8.225278 -12: 13 A -0.566944 0.119921 8.531586 -12: 14 C -0.681718 0.155401 7.449421 -12: 15 A 1.114625 0.177478 8.406658 -12: 16 C 0.209275 0.178806 8.876794 -12: 17 A 0.182029 0.144124 7.857810 -12: 18 G -0.634468 0.142029 7.148503 -12: 19 T -0.808495 0.109849 7.214585 -12: 20 G -0.660106 0.130614 7.163760 -12: 21 C 0.377924 0.144487 6.444206 -12: 22 A 1.238849 0.168886 6.598902 -12: 23 A 0.372003 0.187160 7.691326 -12: 24 G 0.590835 0.115245 7.357205 -12: 25 C 0.507378 0.121377 7.407406 -12: 26 T -0.341736 0.206346 8.269124 -12: 27 G -1.183804 0.146394 8.195521 -12: 28 T -0.588579 0.236768 7.109519 -12: 29 T 1.548155 0.187290 8.619592 -12: 30 G 0.935080 0.159360 7.153718 -12: 31 A 0.080601 0.119322 8.334003 -12: 32 A 0.135833 0.144603 8.254804 -12: 33 T -0.689822 0.163885 7.153272 -12: 34 C -0.442044 0.116712 9.222482 -12: 35 C 0.006143 0.122890 7.686490 -12: 36 T -0.439292 0.176346 7.135783 -12: 37 G 1.580827 0.138243 8.895194 -12: 38 C 1.068271 0.129942 8.509816 -12: 39 C 0.509839 0.125859 8.376747 -12: 40 A 1.481592 0.150149 8.551979 -12: 41 T 0.501036 0.222623 8.407757 -12: 42 T -0.670658 0.131562 10.968962 -12: 43 C -0.698923 0.113698 9.856374 -12: 44 T -0.555862 0.113812 8.696571 -12: 45 G -0.455272 0.135835 8.416758 -12: 46 G 1.250371 0.149751 9.457069 -12: 47 G 0.623332 0.145319 8.499714 -12: 48 G 0.695963 0.143216 7.960942 -12: 49 G -0.249940 0.243618 7.950039 -12: 50 T -1.661689 0.142153 9.528579 -12: 51 C -1.203690 0.122606 8.463405 -12: 52 T -0.716455 0.128440 7.035435 -12: 53 G -0.759977 0.142399 8.437973 -12: 54 G -0.802840 0.157061 7.802762 -12: 55 A 0.680831 0.159626 7.500440 -12: 56 G -0.134592 0.260248 6.134130 -12: 57 G -1.229793 0.165220 8.214905 -12: 58 A 0.003239 0.172415 7.446199 -12: 59 T -0.742153 0.157955 7.368556 -12: 60 G -1.060039 0.135540 8.245991 -12: 61 G 0.171675 0.129316 7.841066 -12: 62 T 0.125342 0.112360 6.897592 -12: 63 G 0.160828 0.112461 7.940848 -12: 64 G 0.412585 0.131637 7.555494 -12: 65 C -0.240946 0.148206 7.376078 -12: 66 C 0.201810 0.116791 8.685833 -12: 67 C 0.887716 0.145968 7.398972 -12: 68 T 0.499432 0.140390 7.761889 -12: 69 C 1.649669 0.170317 7.459800 -12: 70 T 0.892544 0.179992 6.799202 -12: 71 T -0.048452 0.168846 7.006836 -12: 72 C 0.843768 0.133001 8.420102 -12: 73 T 1.146918 0.126127 7.266869 -12: 74 C 1.701908 0.162262 7.973849 -12: 75 A 0.722689 0.272392 6.926387 -12: 76 C -0.422857 0.177529 7.769481 -12: 77 T 0.652839 0.153194 8.006291 -12: 78 T 1.652439 0.156209 8.763206 -12: 79 A 1.067100 0.143712 8.682311 -12: 80 G 0.313558 0.129372 8.313437 -12: 81 C -0.186521 0.119165 7.979121 -12: 82 T -0.849993 0.130804 8.510041 -12: 83 C 0.230951 0.135218 7.679952 -12: 84 C 1.145062 0.130036 7.886291 -12: 85 C 0.615303 0.202166 7.516761 -12: 86 A -0.296616 0.127621 8.316122 -12: 87 C -0.800418 0.133430 7.996579 -12: 88 T 0.446001 0.134251 7.482554 -12: 89 A -0.082318 0.126296 7.080921 -12: 90 G -0.367767 0.136267 8.172821 -12: 91 G 0.886769 0.159156 8.788610 -12: 92 C -0.150809 0.152867 8.720862 -12: 93 A -0.026322 0.113684 9.718911 -12: 94 G 0.280566 0.112469 8.491561 -12: 95 T 0.405291 0.110869 7.902351 -12: 96 G 0.088007 0.145531 8.018662 -12: 97 C -1.115384 0.145017 7.901880 -12: 98 C -1.248004 0.130099 8.557863 -12: 99 C -1.012972 0.144737 8.563062 -12: 100 C -0.469617 0.135931 8.055082 -12: 101 G -0.165069 0.160724 6.519965 -12: 102 A 1.740094 0.193153 9.840417 -12: 103 G 0.669955 0.314922 7.620682 -12: 104 A -1.132121 0.152171 7.919706 -12: 105 G -1.596206 0.131494 7.824341 -12: 106 T -1.737968 0.128396 8.849431 -12: 107 G -1.074737 0.193561 8.028422 -12: 108 G 0.545084 0.174554 7.266385 -12: 109 G 1.201747 0.171350 8.240015 -12: 110 G -0.048935 0.201652 8.525520 -12: 111 A -0.315501 0.132319 7.861927 -12: 112 C -0.784466 0.171062 7.665784 -12: 113 T -0.867454 0.118625 8.792853 -12: 114 G -0.523957 0.129469 7.963081 -12: 115 T -0.495066 0.133924 7.746632 -12: 116 A -0.511067 0.146957 7.315947 -12: 117 G -0.800620 0.146595 8.104681 -12: 118 G 0.817982 0.162913 8.418139 -12: 119 G 0.307257 0.135951 8.070265 -12: 120 G -0.183235 0.158126 7.720549 -12: 121 G -1.247885 0.154236 7.212156 -12: 122 T -1.235173 0.192299 7.176175 -12: 123 C 0.227138 0.153021 7.120850 -12: 124 C 0.269620 0.102267 6.807935 -12: 125 A 0.496941 0.124780 7.077841 -12: 126 A 0.067668 0.141326 7.269386 -12: 127 C -0.848179 0.147831 7.672505 -12: 128 C -0.099992 0.138489 8.403705 -12: 129 C -0.573005 0.185177 7.342544 -12: 130 C 1.420827 0.147371 9.100210 -12: 131 A 1.394561 0.127978 8.176846 -12: 132 C 0.747967 0.120094 7.880960 -12: 133 A 0.556398 0.106186 7.639646 -12: 134 T 0.339996 0.109876 7.777754 -12: 135 T 0.192567 0.125309 8.691854 -12: 136 C 0.864985 0.115457 8.927729 -12: 137 C 0.940769 0.107040 8.939465 -12: 138 C 0.595673 0.112515 8.679834 -12: 139 C 1.702741 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892 T 0.506814 0.111613 7.832068 -12: 893 T -0.082847 0.139399 7.504026 -12: 894 C -0.718765 0.154299 7.474746 -12: 895 C 1.219995 0.175911 7.363104 -12: 896 T 0.257746 0.179918 8.496624 -12: 897 C 1.541839 0.150549 9.064358 -12: 898 A 0.931403 0.169742 7.489445 -12: 899 T 0.527443 0.156622 8.163537 -12: 900 G -0.306690 0.124511 8.165930 -12: 901 T 0.696285 0.129516 7.877397 -12: 902 C 0.277346 0.107683 8.330823 -12: 903 C 0.999716 0.139050 7.982317 -12: 904 A 0.492418 0.172543 8.041596 -12: 905 T 1.413500 0.161476 9.054226 -12: 906 C 0.196023 0.242968 8.028413 -12: 907 T -0.818297 0.172723 8.410040 -12: 908 A 0.924136 0.144878 8.209350 -12: 909 T 0.485136 0.124072 7.973967 -12: 910 G -0.320418 0.120914 7.193840 -12: 911 A -0.184015 0.118072 8.249662 -12: 912 C -0.572857 0.099377 9.138751 -12: 913 C 0.258631 0.112806 9.424241 -12: 914 A 0.110542 0.128213 8.327389 -12: 915 C -0.632591 0.107078 8.020502 -12: 916 C -0.660664 0.142349 7.863237 -12: 917 T 1.258562 0.158728 8.410666 -12: 918 C 0.959553 0.115968 8.155495 -12: 919 A 1.806448 0.149483 8.726682 -12: 920 G 0.585313 0.214185 8.891140 -12: 921 T 0.637977 0.133747 8.932821 -12: 922 C -0.167980 0.132328 7.867389 -12: 923 T 0.385351 0.135030 8.694772 -12: 924 G 1.467777 0.122657 8.328823 -12: 925 T 1.156436 0.141427 7.031806 -12: 926 A 0.296050 0.161997 7.324454 11: 928 G -0.823620 0.182883 9.532703 11: 929 T 1.573712 0.225036 8.878208 11: 930 C -0.339260 0.145216 8.672433 @@ -627022,51 +627058,6 @@ 11: 559 T 0.653976 0.093942 7.747313 11: 560 T 0.721076 0.159104 7.596862 11: 561 A -1.113541 0.142178 7.064008 -11: 562 T 0.676813 0.123413 8.485894 -11: 563 T 1.213495 0.153176 6.588950 -11: 564 C -0.541277 0.140969 6.613651 -11: 565 T 0.498907 0.136248 8.225033 -11: 566 T 1.260255 0.128926 7.437578 -11: 567 C 0.738710 0.120801 9.717486 -11: 568 A -0.649786 0.137775 7.665890 -11: 569 A -1.333848 0.169713 7.748684 -11: 570 T 0.985873 0.141225 8.079935 -11: 571 T 0.868524 0.167108 7.055110 -11: 572 A -0.868175 0.144113 6.014555 -11: 573 T 0.329468 0.124702 6.933790 -11: 574 T 0.087204 0.098567 5.507678 -11: 575 T 0.524725 0.088491 7.925206 -11: 576 T 0.672756 0.134032 5.567116 -11: 577 A -0.407978 0.109209 8.412396 -11: 578 G -0.695554 0.111097 6.831264 -11: 579 C -0.351350 0.103383 8.282887 -11: 580 T 0.185887 0.106988 6.236842 -11: 581 T -0.015127 0.084618 8.605661 -11: 582 T -0.063504 0.090723 8.561688 -11: 583 T 0.257855 0.087696 9.042692 -11: 584 T 1.018560 0.138924 7.208032 -11: 585 C -0.130892 0.118249 8.633611 -11: 586 T 1.389826 0.199611 7.029552 -11: 587 C 0.066669 0.103619 9.932925 -11: 588 T 0.932390 0.181204 9.180959 -11: 589 G -0.404308 0.140632 8.817442 -11: 590 T 0.949407 0.191946 6.905305 -11: 591 A -0.822034 0.121525 8.392059 -11: 592 A -1.356599 0.134774 7.216625 -11: 593 T 0.687378 0.128863 7.542632 -11: 594 T 0.776496 0.146885 8.516963 -11: 595 G -0.528326 0.134746 7.763261 -11: 596 T 0.895498 0.173567 9.419248 -11: 597 A -0.184997 0.154039 7.477816 -11: 598 A -0.961465 0.102563 9.379392 -11: 599 G -1.548730 0.173882 8.797525 -11: 600 T 1.606543 0.270099 8.372373 -11: 601 C 0.056409 0.138974 9.062657 -11: 602 T 0.865641 0.192260 9.394825 -11: 603 G -0.348534 0.163240 9.530726 -11: 604 C 0.161046 0.266937 15.063370 -11: 605 T 0.194787 0.502125 16.019979 - 9/19 Test #11: test_squiggle_r94 ................ Passed 3.75 sec 12: 927 C -0.836543 0.154324 7.840771 12: 928 T 0.824620 0.159619 7.303352 12: 929 T 1.516867 0.156615 7.500090 @@ -628668,6 +628659,51 @@ 12: 575 T 0.531261 0.133317 7.705036 12: 576 T 1.240177 0.109625 8.080192 12: 577 A 1.233392 0.108421 8.062259 +11: 562 T 0.676813 0.123413 8.485894 +11: 563 T 1.213495 0.153176 6.588950 +11: 564 C -0.541277 0.140969 6.613651 +11: 565 T 0.498907 0.136248 8.225033 +11: 566 T 1.260255 0.128926 7.437578 +11: 567 C 0.738710 0.120801 9.717486 +11: 568 A -0.649786 0.137775 7.665890 +11: 569 A -1.333848 0.169713 7.748684 +11: 570 T 0.985873 0.141225 8.079935 +11: 571 T 0.868524 0.167108 7.055110 +11: 572 A -0.868175 0.144113 6.014555 +11: 573 T 0.329468 0.124702 6.933790 +11: 574 T 0.087204 0.098567 5.507678 +11: 575 T 0.524725 0.088491 7.925206 +11: 576 T 0.672756 0.134032 5.567116 +11: 577 A -0.407978 0.109209 8.412396 +11: 578 G -0.695554 0.111097 6.831264 +11: 579 C -0.351350 0.103383 8.282887 +11: 580 T 0.185887 0.106988 6.236842 +11: 581 T -0.015127 0.084618 8.605661 +11: 582 T -0.063504 0.090723 8.561688 +11: 583 T 0.257855 0.087696 9.042692 +11: 584 T 1.018560 0.138924 7.208032 +11: 585 C -0.130892 0.118249 8.633611 +11: 586 T 1.389826 0.199611 7.029552 +11: 587 C 0.066669 0.103619 9.932925 +11: 588 T 0.932390 0.181204 9.180959 +11: 589 G -0.404308 0.140632 8.817442 +11: 590 T 0.949407 0.191946 6.905305 +11: 591 A -0.822034 0.121525 8.392059 +11: 592 A -1.356599 0.134774 7.216625 +11: 593 T 0.687378 0.128863 7.542632 +11: 594 T 0.776496 0.146885 8.516963 +11: 595 G -0.528326 0.134746 7.763261 +11: 596 T 0.895498 0.173567 9.419248 +11: 597 A -0.184997 0.154039 7.477816 +11: 598 A -0.961465 0.102563 9.379392 +11: 599 G -1.548730 0.173882 8.797525 +11: 600 T 1.606543 0.270099 8.372373 +11: 601 C 0.056409 0.138974 9.062657 +11: 602 T 0.865641 0.192260 9.394825 +11: 603 G -0.348534 0.163240 9.530726 +11: 604 C 0.161046 0.266937 15.063370 +11: 605 T 0.194787 0.502125 16.019979 + 9/19 Test #11: test_squiggle_r94 ................ Passed 1.25 sec 12: 578 G 0.709108 0.106319 7.812791 12: 579 C 0.410596 0.087618 8.145637 12: 580 T 0.457344 0.099777 8.049680 @@ -628696,12 +628732,9 @@ 12: 603 G -0.572062 0.335164 12.230330 12: 604 C 0.561030 0.467363 9.792212 12: 605 T -0.235200 0.581865 6.671800 -10/19 Test #12: test_squiggle_r10 ................ Passed 4.14 sec +10/19 Test #12: test_squiggle_r10 ................ Passed 1.21 sec 1: Test: Decoding of original and vectorised posterior same ...passed 1: Test: Decoding of original and vectorised posterior same with stay penalty ...passed -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Decoding of original and vectorised posterior same with skip penalty ...passed 1: Suite: Test output of vectorised ELU unit 1: Test: Test input all zeros ...passed @@ -628744,6 +628777,12 @@ 1: Test: Test assumptions about bounds -- overlap ...scrappie_unittest: Blocks 3 and 4 don't overlap [3 , 3) -> [4 , 6) 1: 1: passed +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } +1: Test: Test mapping -- viterbi ...passed +1: Test: Test mapping -- forward ...passed +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.231445 over 12818 blocks (0.903513 per block) 10: block pos 10: 0 -1 @@ -641564,28 +641603,8 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } -3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } -11/19 Test #10: test_seqmappy .................... Passed 7.20 sec -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } -1: Test: Test mapping -- viterbi ...passed -4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } -4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -12/19 Test #4: test_rawrgrgr_r94_call ........... Passed 8.67 sec -3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } -3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT -13/19 Test #3: test_raw_call .................... Passed 9.31 sec +11/19 Test #10: test_seqmappy .................... Passed 5.53 sec 6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 -1: Test: Test mapping -- forward ...passed -5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } -5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -14/19 Test #5: test_rawrgrgr_r941_call .......... Passed 11.88 sec 1: Test: Test mapping -- viterbi with path ...Viterbi mapping path 1: 0, 0, 0, 0, 0, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3 1: , 3, 4, 4, 4, 5, 5, 6, 6, 6, 6, 7, 7, 8, 8, 8, 8, 8, 9, 9, 9 @@ -641638,25 +641657,33 @@ 1: , 156, 156, 156, 156, 156, 156, 157, 157, 157, 157, 157, 157, 157, 158, 158, 158, 158, 159, 159, 160 1: , 160, 160, 160, 160, 160, 160, 161, 161, 161, 161, 161, 161, 161, 161, 161, 162, 162, 162, 162, 162 1: passed +5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } +5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +12/19 Test #5: test_rawrgrgr_r941_call .......... Passed 6.87 sec 1: Test: Test mapping -- forwards score exceeds Viterbi ...vit = -109.542824 fwd = -87.884453 1: passed -2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } -2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175289, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } +4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } +4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } +13/19 Test #4: test_rawrgrgr_r94_call ........... Passed 7.35 sec +3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA +3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } +3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } +3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT +14/19 Test #3: test_raw_call .................... Passed 7.40 sec 1: Test: Test mapping -- forwards with full band equals forwards ...fwd = -87.884453 fwdB = -87.884453 1: passed 1: Test: Test mapping -- Viterbi with full band equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed -7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } -7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } -6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } -6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } -6: TCTGGTTTTTTATTATGTTTTATCTTCCATA -15/19 Test #6: test_rawrgrgr_r10_call ........... Passed 15.79 sec 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 @@ -641665,6 +641692,247 @@ 1: passed 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed +2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT +2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459405, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } +2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +15/19 Test #2: test_events_call ................. Passed 10.42 sec +6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } +6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA +6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } +6: TCTGGTTTTTTATTATGTTTTATCTTCCATA +16/19 Test #6: test_rawrgrgr_r10_call ........... Passed 10.54 sec +1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 +1: passed +1: Suite: Functions on scrappie matrices +1: Test: Row normalisation edge case nr 8 ...passed +1: Test: Row normalisation edge case nr 9 ...passed +1: Test: Row normalisation edge case nr 10 ...passed +1: Test: Row normalisation edge case nr 11 ...passed +1: Suite: Test manipulating signal +1: Test: Normalise trimmed signal ...passed +1: Test: Trimming of raw signal ...passed +1: Suite: Test sequence-to-squiggle +1: Test: Short sequence to squiggle with network parameterisation ...# Squiggle with network parameters +1: 0 : -7.100222e-02 -1.052642e+00 1.414901e-01 +1: 1 : -7.592717e-01 -1.105536e+00 -4.640082e-01 +1: 2 : 6.517259e-01 -1.619675e+00 -1.508518e+00 +1: 3 : 7.911155e-01 -1.961320e+00 -1.867191e+00 +1: 4 : -4.636365e-02 -2.309864e+00 -2.113610e+00 +1: 5 : 3.253556e-01 -2.105663e+00 -2.100757e+00 +1: 6 : -2.154961e-01 -2.309796e+00 -2.132698e+00 +1: 7 : -3.571292e-02 -2.083405e+00 -2.042708e+00 +1: 8 : 1.599802e+00 -1.887870e+00 -2.025741e+00 +1: 9 : 8.314085e-01 -2.451915e+00 -2.454266e+00 +1: 10 : 6.323134e-01 -2.240801e+00 -2.265080e+00 +1: 11 : -6.508422e-01 -1.993278e+00 -2.375013e+00 +1: 12 : -5.089763e-01 -2.072061e+00 -2.146450e+00 +1: 13 : 8.102253e-01 -2.133760e+00 -2.323975e+00 +1: 14 : 8.833820e-02 -2.125255e+00 -2.124305e+00 +1: 15 : 1.071858e+00 -1.749681e+00 -2.241458e+00 +1: 16 : -2.662371e-01 -2.307614e+00 -2.348673e+00 +1: 17 : 2.526874e-01 -2.248703e+00 -2.320865e+00 +1: 18 : 9.335266e-01 -1.882824e+00 -2.341311e+00 +1: 19 : -3.805782e-01 -1.794182e+00 -2.349835e+00 +1: 20 : -1.473435e+00 -2.014107e+00 -2.131543e+00 +1: 21 : -1.468751e+00 -1.995398e+00 -2.432606e+00 +1: 22 : 5.183253e-01 -1.618705e+00 -2.231401e+00 +1: 23 : -1.178945e+00 -1.925591e+00 -2.094005e+00 +1: 24 : -4.925162e-01 -2.034039e+00 -2.007017e+00 +1: 25 : 7.687722e-01 -1.832321e+00 -2.014938e+00 +1: 26 : -3.909144e-01 -1.958265e+00 -1.838261e+00 +1: 27 : -9.566960e-01 -2.116315e+00 -1.882866e+00 +1: 28 : -1.504592e+00 -1.967939e+00 -1.786390e+00 +1: 29 : -1.584746e+00 -1.986520e+00 -2.088347e+00 +1: 30 : 7.169726e-01 -1.573472e+00 -1.709084e+00 +1: 31 : -5.171665e-01 -1.965511e+00 -1.954707e+00 +1: 32 : -9.571309e-01 -2.094756e+00 -1.757891e+00 +1: 33 : -1.530293e+00 -1.958263e+00 -1.948082e+00 +1: 34 : -7.154673e-01 -2.065584e+00 -2.075371e+00 +1: 35 : 1.340190e-01 -1.944091e+00 -1.914026e+00 +1: 36 : 1.544947e+00 -1.929502e+00 -2.150595e+00 +1: 37 : 7.528057e-01 -2.257131e+00 -1.926496e+00 +1: 38 : 2.406347e-01 -2.208216e+00 -2.034885e+00 +1: 39 : -5.725307e-01 -1.883131e+00 -2.108053e+00 +1: 40 : 1.791558e+00 -1.536994e+00 -2.167133e+00 +1: 41 : 1.642266e-01 -1.959490e+00 -2.100835e+00 +1: 42 : 1.738289e+00 -1.946394e+00 -2.119461e+00 +1: 43 : 9.157931e-01 -2.115188e+00 -2.043411e+00 +1: 44 : 1.088121e-01 -2.110393e+00 -2.055440e+00 +1: 45 : -2.463773e-01 -2.352781e+00 -2.026276e+00 +1: 46 : -2.968376e-01 -2.384610e+00 -1.996209e+00 +1: 47 : -2.164531e-01 -2.447103e+00 -1.998921e+00 +1: 48 : -1.930564e-01 -2.436937e+00 -2.000106e+00 +1: 49 : -1.830719e-01 -2.442657e+00 -2.056543e+00 +1: 50 : -1.657240e-01 -2.444262e+00 -2.075977e+00 +1: 51 : -1.614439e-01 -2.459783e+00 -2.059981e+00 +1: 52 : -1.486868e-01 -2.461916e+00 -2.067977e+00 +1: 53 : -1.427199e-01 -2.468782e+00 -2.054369e+00 +1: 54 : -1.372803e-01 -2.467317e+00 -2.054323e+00 +1: 55 : -1.326133e-01 -2.470593e+00 -2.053199e+00 +1: 56 : -1.302194e-01 -2.473777e+00 -2.056859e+00 +1: 57 : -1.261704e-01 -2.478879e+00 -2.061419e+00 +1: 58 : -1.243679e-01 -2.484729e+00 -2.086884e+00 +1: 59 : -1.173265e-01 -2.494588e+00 -2.133612e+00 +1: 60 : -1.214529e-01 -2.494635e+00 -2.183348e+00 +1: 61 : -1.293582e-01 -2.506257e+00 -2.171958e+00 +1: 62 : -1.191051e-01 -2.497786e+00 -2.145566e+00 +1: 63 : -1.195273e-01 -2.507583e+00 -2.283516e+00 +1: 64 : -1.336055e-01 -2.507490e+00 -2.176662e+00 +1: 65 : -1.368918e-01 -2.529756e+00 -2.196912e+00 +1: 66 : -1.233890e-01 -2.436671e+00 -1.958676e+00 +1: 67 : -1.247224e-01 -2.504339e+00 -2.117309e+00 +1: 68 : -1.032085e-01 -2.471079e+00 -2.012799e+00 +1: 69 : -2.071139e-01 -2.406339e+00 -1.964724e+00 +1: 70 : -2.314971e-01 -2.482945e+00 -2.155415e+00 +1: 71 : -2.581455e-01 -2.333455e+00 -1.886001e+00 +1: 72 : -6.401938e-01 -2.226488e+00 -2.015915e+00 +1: 73 : -7.949377e-01 -2.196288e+00 -2.162808e+00 +1: 74 : -8.079978e-01 -2.362137e+00 -2.147486e+00 +1: 75 : -1.083655e+00 -1.982127e+00 -2.269919e+00 +1: 76 : 1.037179e+00 -1.306082e+00 -2.118258e+00 +1: 77 : -8.516058e-01 -2.005135e+00 -2.194561e+00 +1: 78 : 1.016745e+00 -2.144597e+00 -1.807433e+00 +1: 79 : 7.776245e-01 -1.778889e+00 -1.912730e+00 +1: 80 : -7.908624e-01 -1.996992e+00 -2.312429e+00 +1: 81 : 1.090484e+00 -2.140350e+00 -2.126710e+00 +1: 82 : 1.015684e+00 -2.173901e+00 -2.125421e+00 +1: 83 : 1.260068e-01 -2.163344e+00 -1.811512e+00 +1: 84 : -1.337411e-01 -2.389348e+00 -1.904007e+00 +1: 85 : -3.989461e-01 -2.244048e+00 -1.749086e+00 +1: 86 : -9.542197e-01 -2.211177e+00 -1.788534e+00 +1: 87 : -9.941038e-01 -1.815204e+00 -1.902731e+00 +1: 88 : 2.104662e+00 -1.513922e+00 -2.045570e+00 +1: 89 : 9.999876e-01 -2.050895e+00 -2.244490e+00 +1: 90 : -7.696630e-02 -1.947020e+00 -2.157029e+00 +1: 91 : -9.479131e-01 -2.263503e+00 -2.090311e+00 +1: 92 : -1.952076e+00 -1.847213e+00 -2.148435e+00 +1: 93 : 1.132581e-01 -2.016356e+00 -2.078692e+00 +1: 94 : 2.403807e-01 -2.336333e+00 -2.143608e+00 +1: 95 : 1.057027e+00 -1.977065e+00 -2.303994e+00 +1: 96 : 3.843040e-01 -2.226576e+00 -2.423552e+00 +1: 97 : 7.154019e-01 -1.956273e+00 -2.181569e+00 +1: 98 : 2.062936e-01 -1.297073e+00 -2.801933e+00 +1: 99 : -4.569919e-01 -6.026990e-01 -2.507457e+00 +1: passed +1: Test: Short sequence to squiggle with transformed parameterisation ...# Squiggle with transformed parameters +1: 0 : -7.100222e-02 3.490146e-01 8.680637e-01 +1: 1 : -7.592717e-01 3.310335e-01 1.590436e+00 +1: 2 : 6.517259e-01 1.979630e-01 4.520027e+00 +1: 3 : 7.911155e-01 1.406727e-01 6.470098e+00 +1: 4 : -4.636365e-02 9.927477e-02 8.278069e+00 +1: 5 : 3.253556e-01 1.217649e-01 8.172357e+00 +1: 6 : -2.154961e-01 9.928147e-02 8.437597e+00 +1: 7 : -3.571292e-02 1.245055e-01 7.711463e+00 +1: 8 : 1.599802e+00 1.513939e-01 7.581724e+00 +1: 9 : 8.314085e-01 8.612853e-02 1.163788e+01 +1: 10 : 6.323134e-01 1.063733e-01 9.631895e+00 +1: 11 : -6.508422e-01 1.362481e-01 1.075115e+01 +1: 12 : -5.089763e-01 1.259260e-01 8.554433e+00 +1: 13 : 8.102253e-01 1.183913e-01 1.021620e+01 +1: 14 : 8.833820e-02 1.194025e-01 8.367081e+00 +1: 15 : 1.071858e+00 1.738294e-01 9.407034e+00 +1: 16 : -2.662371e-01 9.949841e-02 1.047167e+01 +1: 17 : 2.526874e-01 1.055360e-01 1.018448e+01 +1: 18 : 9.335266e-01 1.521598e-01 1.039486e+01 +1: 19 : -3.805782e-01 1.662634e-01 1.048384e+01 +1: 20 : -1.473435e+00 1.334395e-01 8.427864e+00 +1: 21 : -1.468751e+00 1.359596e-01 1.138852e+01 +1: 22 : 5.183253e-01 1.981551e-01 9.312908e+00 +1: 23 : -1.178945e+00 1.457896e-01 8.117357e+00 +1: 24 : -4.925162e-01 1.308061e-01 7.441085e+00 +1: 25 : 7.687722e-01 1.600417e-01 7.500263e+00 +1: 26 : -3.909144e-01 1.411030e-01 6.285598e+00 +1: 27 : -9.566960e-01 1.204748e-01 6.572314e+00 +1: 28 : -1.504592e+00 1.397446e-01 5.967870e+00 +1: 29 : -1.584746e+00 1.371720e-01 8.071564e+00 +1: 30 : 7.169726e-01 2.073242e-01 5.523900e+00 +1: 31 : -5.171665e-01 1.400842e-01 7.061852e+00 +1: 32 : -9.571309e-01 1.231003e-01 5.800190e+00 +1: 33 : -1.530293e+00 1.411033e-01 7.015221e+00 +1: 34 : -7.154673e-01 1.267443e-01 7.967502e+00 +1: 35 : 1.340190e-01 1.431173e-01 6.780335e+00 +1: 36 : 1.544947e+00 1.452205e-01 8.589970e+00 +1: 37 : 7.528057e-01 1.046503e-01 6.865414e+00 +1: 38 : 2.406347e-01 1.098965e-01 7.651375e+00 +1: 39 : -5.725307e-01 1.521131e-01 8.232198e+00 +1: 40 : 1.791558e+00 2.150264e-01 8.733207e+00 +1: 41 : 1.642266e-01 1.409303e-01 8.172995e+00 +1: 42 : 1.738289e+00 1.427880e-01 8.326647e+00 +1: 43 : 9.157931e-01 1.206106e-01 7.716887e+00 +1: 44 : 1.088121e-01 1.211904e-01 7.810273e+00 +1: 45 : -2.463773e-01 9.510433e-02 7.585787e+00 +1: 46 : -2.968376e-01 9.212491e-02 7.361097e+00 +1: 47 : -2.164531e-01 8.654394e-02 7.381091e+00 +1: 48 : -1.930564e-01 8.742826e-02 7.389842e+00 +1: 49 : -1.830719e-01 8.692955e-02 7.818890e+00 +1: 50 : -1.657240e-01 8.679014e-02 7.972329e+00 +1: 51 : -1.614439e-01 8.545349e-02 7.845820e+00 +1: 52 : -1.486868e-01 8.527137e-02 7.908805e+00 +1: 53 : -1.427199e-01 8.468797e-02 7.801917e+00 +1: 54 : -1.372803e-01 8.481213e-02 7.801556e+00 +1: 55 : -1.326133e-01 8.453473e-02 7.792791e+00 +1: 56 : -1.302194e-01 8.426598e-02 7.821364e+00 +1: 57 : -1.261704e-01 8.383711e-02 7.857110e+00 +1: 58 : -1.243679e-01 8.334816e-02 8.059758e+00 +1: 59 : -1.173265e-01 8.253042e-02 8.445313e+00 +1: 60 : -1.214529e-01 8.252656e-02 8.875977e+00 +1: 61 : -1.293582e-01 8.157299e-02 8.775450e+00 +1: 62 : -1.191051e-01 8.226693e-02 8.546880e+00 +1: 63 : -1.195273e-01 8.146491e-02 9.811115e+00 +1: 64 : -1.336055e-01 8.147245e-02 8.816829e+00 +1: 65 : -1.368918e-01 7.967844e-02 8.997186e+00 +1: 66 : -1.233890e-01 8.745151e-02 7.089930e+00 +1: 67 : -1.247224e-01 8.172958e-02 8.308747e+00 +1: 68 : -1.032085e-01 8.449367e-02 7.484239e+00 +1: 69 : -2.071139e-01 9.014467e-02 7.132941e+00 +1: 70 : -2.314971e-01 8.349697e-02 8.631474e+00 +1: 71 : -2.581455e-01 9.696014e-02 6.592949e+00 +1: 72 : -6.401938e-01 1.079067e-01 7.507593e+00 +1: 73 : -7.949377e-01 1.112152e-01 8.695518e+00 +1: 74 : -8.079978e-01 9.421863e-02 8.563301e+00 +1: 75 : -1.083655e+00 1.377758e-01 9.678620e+00 +1: 76 : 1.037179e+00 2.708792e-01 8.316633e+00 +1: 77 : -8.516058e-01 1.346421e-01 8.976064e+00 +1: 78 : 1.016745e+00 1.171152e-01 6.094779e+00 +1: 79 : 7.776245e-01 1.688257e-01 6.771546e+00 +1: 80 : -7.908624e-01 1.357430e-01 1.009893e+01 +1: 81 : 1.090484e+00 1.176136e-01 8.387229e+00 +1: 82 : 1.015684e+00 1.137331e-01 8.376424e+00 +1: 83 : 1.260068e-01 1.149402e-01 6.119696e+00 +1: 84 : -1.337411e-01 9.168947e-02 6.712739e+00 +1: 85 : -3.989461e-01 1.060285e-01 5.749343e+00 +1: 86 : -9.542197e-01 1.095716e-01 5.980679e+00 +1: 87 : -9.941038e-01 1.628047e-01 6.704179e+00 +1: 88 : 2.104662e+00 2.200452e-01 7.733565e+00 +1: 89 : 9.999876e-01 1.286197e-01 9.435606e+00 +1: 90 : -7.696630e-02 1.426987e-01 8.645411e+00 +1: 91 : -9.479131e-01 1.039856e-01 8.087430e+00 +1: 92 : -1.952076e+00 1.576759e-01 8.571430e+00 +1: 93 : 1.132581e-01 1.331397e-01 7.994008e+00 +1: 94 : 2.403807e-01 9.668154e-02 8.530156e+00 +1: 95 : 1.057027e+00 1.384751e-01 1.001410e+01 +1: 96 : 3.843040e-01 1.078972e-01 1.128587e+01 +1: 97 : 7.154019e-01 1.413844e-01 8.860198e+00 +1: 98 : 2.062936e-01 2.733308e-01 1.647646e+01 +1: 99 : -4.569919e-01 5.473324e-01 1.227368e+01 +1: passed +1: Suite: Miscellaneous utility functions +1: Test: Median of odd length array ...passed +1: Test: Median of even length array ...passed +1: +1: Run Summary: Type Total Ran Passed Failed Inactive +1: suites 11 11 n/a 0 0 +1: tests 71 71 71 0 0 +1: asserts 506 506 506 0 n/a +1: +1: Elapsed time = 9.319 seconds +17/19 Test #1: unittest ......................... Passed 11.24 sec 9: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa (score = -35302.484375) 9: idx signal pos base current sd dwell 9: 0 nan -1 N nan nan nan @@ -682208,10 +682476,6 @@ 9: 40538 -0.350735 3159 C -0.393845 0.098843 8.413516 9: 40539 -0.674491 3159 C -0.393845 0.098843 8.413516 9: 40540 -0.768919 3159 C -0.393845 0.098843 8.413516 -2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273171, "nevent" : 16122, "sequence_length" : 9414, "events_per_base" : 1.712556 } -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -16/19 Test #2: test_events_call ................. Passed 21.65 sec 9: 40541 -0.526103 3159 C -0.393845 0.098843 8.413516 9: 40542 -0.391205 3159 C -0.393845 0.098843 8.413516 9: 40543 -0.512613 3159 C -0.393845 0.098843 8.413516 @@ -706066,247 +706330,19 @@ 9: 64392 nan -1 N nan nan nan 9: 64393 nan -1 N nan nan nan 9: 64394 nan -1 N nan nan nan -17/19 Test #9: test_mappy ....................... Passed 21.90 sec -1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 -1: passed -1: Suite: Functions on scrappie matrices -1: Test: Row normalisation edge case nr 8 ...passed -1: Test: Row normalisation edge case nr 9 ...passed -1: Test: Row normalisation edge case nr 10 ...passed -1: Test: Row normalisation edge case nr 11 ...passed -1: Suite: Test manipulating signal -1: Test: Normalise trimmed signal ...passed -1: Test: Trimming of raw signal ...passed -1: Suite: Test sequence-to-squiggle -1: Test: Short sequence to squiggle with network parameterisation ...# Squiggle with network parameters -1: 0 : -7.100222e-02 -1.052642e+00 1.414901e-01 -1: 1 : -7.592717e-01 -1.105536e+00 -4.640082e-01 -1: 2 : 6.517259e-01 -1.619675e+00 -1.508518e+00 -1: 3 : 7.911155e-01 -1.961320e+00 -1.867191e+00 -1: 4 : -4.636365e-02 -2.309864e+00 -2.113610e+00 -1: 5 : 3.253556e-01 -2.105663e+00 -2.100757e+00 -1: 6 : -2.154961e-01 -2.309796e+00 -2.132698e+00 -1: 7 : -3.571292e-02 -2.083405e+00 -2.042708e+00 -1: 8 : 1.599802e+00 -1.887870e+00 -2.025741e+00 -1: 9 : 8.314085e-01 -2.451915e+00 -2.454266e+00 -1: 10 : 6.323134e-01 -2.240801e+00 -2.265080e+00 -1: 11 : -6.508422e-01 -1.993278e+00 -2.375013e+00 -1: 12 : -5.089763e-01 -2.072061e+00 -2.146450e+00 -1: 13 : 8.102253e-01 -2.133760e+00 -2.323975e+00 -1: 14 : 8.833820e-02 -2.125255e+00 -2.124305e+00 -1: 15 : 1.071858e+00 -1.749681e+00 -2.241458e+00 -1: 16 : -2.662371e-01 -2.307614e+00 -2.348673e+00 -1: 17 : 2.526874e-01 -2.248703e+00 -2.320865e+00 -1: 18 : 9.335266e-01 -1.882824e+00 -2.341311e+00 -1: 19 : -3.805782e-01 -1.794182e+00 -2.349835e+00 -1: 20 : -1.473435e+00 -2.014107e+00 -2.131543e+00 -1: 21 : -1.468751e+00 -1.995398e+00 -2.432606e+00 -1: 22 : 5.183253e-01 -1.618705e+00 -2.231401e+00 -1: 23 : -1.178945e+00 -1.925591e+00 -2.094005e+00 -1: 24 : -4.925162e-01 -2.034039e+00 -2.007017e+00 -1: 25 : 7.687722e-01 -1.832321e+00 -2.014938e+00 -1: 26 : -3.909144e-01 -1.958265e+00 -1.838261e+00 -1: 27 : -9.566960e-01 -2.116315e+00 -1.882866e+00 -1: 28 : -1.504592e+00 -1.967939e+00 -1.786390e+00 -1: 29 : -1.584746e+00 -1.986520e+00 -2.088347e+00 -1: 30 : 7.169726e-01 -1.573472e+00 -1.709084e+00 -1: 31 : -5.171665e-01 -1.965511e+00 -1.954707e+00 -1: 32 : -9.571309e-01 -2.094756e+00 -1.757891e+00 -1: 33 : -1.530293e+00 -1.958263e+00 -1.948082e+00 -1: 34 : -7.154673e-01 -2.065584e+00 -2.075371e+00 -1: 35 : 1.340190e-01 -1.944091e+00 -1.914026e+00 -1: 36 : 1.544947e+00 -1.929502e+00 -2.150595e+00 -1: 37 : 7.528057e-01 -2.257131e+00 -1.926496e+00 -1: 38 : 2.406347e-01 -2.208216e+00 -2.034885e+00 -1: 39 : -5.725307e-01 -1.883131e+00 -2.108053e+00 -1: 40 : 1.791558e+00 -1.536994e+00 -2.167133e+00 -1: 41 : 1.642266e-01 -1.959490e+00 -2.100835e+00 -1: 42 : 1.738289e+00 -1.946394e+00 -2.119461e+00 -1: 43 : 9.157931e-01 -2.115188e+00 -2.043411e+00 -1: 44 : 1.088121e-01 -2.110393e+00 -2.055440e+00 -1: 45 : -2.463773e-01 -2.352781e+00 -2.026276e+00 -1: 46 : -2.968376e-01 -2.384610e+00 -1.996209e+00 -1: 47 : -2.164531e-01 -2.447103e+00 -1.998921e+00 -1: 48 : -1.930564e-01 -2.436937e+00 -2.000106e+00 -1: 49 : -1.830719e-01 -2.442657e+00 -2.056543e+00 -1: 50 : -1.657240e-01 -2.444262e+00 -2.075977e+00 -1: 51 : -1.614439e-01 -2.459783e+00 -2.059981e+00 -1: 52 : -1.486868e-01 -2.461916e+00 -2.067977e+00 -1: 53 : -1.427199e-01 -2.468782e+00 -2.054369e+00 -1: 54 : -1.372803e-01 -2.467317e+00 -2.054323e+00 -1: 55 : -1.326133e-01 -2.470593e+00 -2.053199e+00 -1: 56 : -1.302194e-01 -2.473777e+00 -2.056859e+00 -1: 57 : -1.261704e-01 -2.478879e+00 -2.061419e+00 -1: 58 : -1.243679e-01 -2.484729e+00 -2.086884e+00 -1: 59 : -1.173265e-01 -2.494588e+00 -2.133612e+00 -1: 60 : -1.214529e-01 -2.494635e+00 -2.183348e+00 -1: 61 : -1.293582e-01 -2.506257e+00 -2.171958e+00 -1: 62 : -1.191051e-01 -2.497786e+00 -2.145566e+00 -1: 63 : -1.195273e-01 -2.507583e+00 -2.283516e+00 -1: 64 : -1.336055e-01 -2.507490e+00 -2.176662e+00 -1: 65 : -1.368918e-01 -2.529756e+00 -2.196912e+00 -1: 66 : -1.233890e-01 -2.436671e+00 -1.958676e+00 -1: 67 : -1.247224e-01 -2.504339e+00 -2.117309e+00 -1: 68 : -1.032085e-01 -2.471079e+00 -2.012799e+00 -1: 69 : -2.071139e-01 -2.406339e+00 -1.964724e+00 -1: 70 : -2.314971e-01 -2.482945e+00 -2.155415e+00 -1: 71 : -2.581455e-01 -2.333455e+00 -1.886001e+00 -1: 72 : -6.401938e-01 -2.226488e+00 -2.015915e+00 -1: 73 : -7.949377e-01 -2.196288e+00 -2.162808e+00 -1: 74 : -8.079978e-01 -2.362137e+00 -2.147486e+00 -1: 75 : -1.083655e+00 -1.982127e+00 -2.269919e+00 -1: 76 : 1.037179e+00 -1.306082e+00 -2.118258e+00 -1: 77 : -8.516058e-01 -2.005135e+00 -2.194561e+00 -1: 78 : 1.016745e+00 -2.144597e+00 -1.807433e+00 -1: 79 : 7.776245e-01 -1.778889e+00 -1.912730e+00 -1: 80 : -7.908624e-01 -1.996992e+00 -2.312429e+00 -1: 81 : 1.090484e+00 -2.140350e+00 -2.126710e+00 -1: 82 : 1.015684e+00 -2.173901e+00 -2.125421e+00 -1: 83 : 1.260068e-01 -2.163344e+00 -1.811512e+00 -1: 84 : -1.337411e-01 -2.389348e+00 -1.904007e+00 -1: 85 : -3.989461e-01 -2.244048e+00 -1.749086e+00 -1: 86 : -9.542197e-01 -2.211177e+00 -1.788534e+00 -1: 87 : -9.941038e-01 -1.815204e+00 -1.902731e+00 -1: 88 : 2.104662e+00 -1.513922e+00 -2.045570e+00 -1: 89 : 9.999876e-01 -2.050895e+00 -2.244490e+00 -1: 90 : -7.696630e-02 -1.947020e+00 -2.157029e+00 -1: 91 : -9.479131e-01 -2.263503e+00 -2.090311e+00 -1: 92 : -1.952076e+00 -1.847213e+00 -2.148435e+00 -1: 93 : 1.132581e-01 -2.016356e+00 -2.078692e+00 -1: 94 : 2.403807e-01 -2.336333e+00 -2.143608e+00 -1: 95 : 1.057027e+00 -1.977065e+00 -2.303994e+00 -1: 96 : 3.843040e-01 -2.226576e+00 -2.423552e+00 -1: 97 : 7.154019e-01 -1.956273e+00 -2.181569e+00 -1: 98 : 2.062936e-01 -1.297073e+00 -2.801933e+00 -1: 99 : -4.569919e-01 -6.026990e-01 -2.507457e+00 -1: passed -1: Test: Short sequence to squiggle with transformed parameterisation ...# Squiggle with transformed parameters -1: 0 : -7.100222e-02 3.490146e-01 8.680637e-01 -1: 1 : -7.592717e-01 3.310335e-01 1.590436e+00 -1: 2 : 6.517259e-01 1.979630e-01 4.520027e+00 -1: 3 : 7.911155e-01 1.406727e-01 6.470098e+00 -1: 4 : -4.636365e-02 9.927477e-02 8.278069e+00 -1: 5 : 3.253556e-01 1.217649e-01 8.172357e+00 -1: 6 : -2.154961e-01 9.928147e-02 8.437597e+00 -1: 7 : -3.571292e-02 1.245055e-01 7.711463e+00 -1: 8 : 1.599802e+00 1.513939e-01 7.581724e+00 -1: 9 : 8.314085e-01 8.612853e-02 1.163788e+01 -1: 10 : 6.323134e-01 1.063733e-01 9.631895e+00 -1: 11 : -6.508422e-01 1.362481e-01 1.075115e+01 -1: 12 : -5.089763e-01 1.259260e-01 8.554433e+00 -1: 13 : 8.102253e-01 1.183913e-01 1.021620e+01 -1: 14 : 8.833820e-02 1.194025e-01 8.367081e+00 -1: 15 : 1.071858e+00 1.738294e-01 9.407034e+00 -1: 16 : -2.662371e-01 9.949841e-02 1.047167e+01 -1: 17 : 2.526874e-01 1.055360e-01 1.018448e+01 -1: 18 : 9.335266e-01 1.521598e-01 1.039486e+01 -1: 19 : -3.805782e-01 1.662634e-01 1.048384e+01 -1: 20 : -1.473435e+00 1.334395e-01 8.427864e+00 -1: 21 : -1.468751e+00 1.359596e-01 1.138852e+01 -1: 22 : 5.183253e-01 1.981551e-01 9.312908e+00 -1: 23 : -1.178945e+00 1.457896e-01 8.117357e+00 -1: 24 : -4.925162e-01 1.308061e-01 7.441085e+00 -1: 25 : 7.687722e-01 1.600417e-01 7.500263e+00 -1: 26 : -3.909144e-01 1.411030e-01 6.285598e+00 -1: 27 : -9.566960e-01 1.204748e-01 6.572314e+00 -1: 28 : -1.504592e+00 1.397446e-01 5.967870e+00 -1: 29 : -1.584746e+00 1.371720e-01 8.071564e+00 -1: 30 : 7.169726e-01 2.073242e-01 5.523900e+00 -1: 31 : -5.171665e-01 1.400842e-01 7.061852e+00 -1: 32 : -9.571309e-01 1.231003e-01 5.800190e+00 -1: 33 : -1.530293e+00 1.411033e-01 7.015221e+00 -1: 34 : -7.154673e-01 1.267443e-01 7.967502e+00 -1: 35 : 1.340190e-01 1.431173e-01 6.780335e+00 -1: 36 : 1.544947e+00 1.452205e-01 8.589970e+00 -1: 37 : 7.528057e-01 1.046503e-01 6.865414e+00 -1: 38 : 2.406347e-01 1.098965e-01 7.651375e+00 -1: 39 : -5.725307e-01 1.521131e-01 8.232198e+00 -1: 40 : 1.791558e+00 2.150264e-01 8.733207e+00 -1: 41 : 1.642266e-01 1.409303e-01 8.172995e+00 -1: 42 : 1.738289e+00 1.427880e-01 8.326647e+00 -1: 43 : 9.157931e-01 1.206106e-01 7.716887e+00 -1: 44 : 1.088121e-01 1.211904e-01 7.810273e+00 -1: 45 : -2.463773e-01 9.510433e-02 7.585787e+00 -1: 46 : -2.968376e-01 9.212491e-02 7.361097e+00 -1: 47 : -2.164531e-01 8.654394e-02 7.381091e+00 -1: 48 : -1.930564e-01 8.742826e-02 7.389842e+00 -1: 49 : -1.830719e-01 8.692955e-02 7.818890e+00 -1: 50 : -1.657240e-01 8.679014e-02 7.972329e+00 -1: 51 : -1.614439e-01 8.545349e-02 7.845820e+00 -1: 52 : -1.486868e-01 8.527137e-02 7.908805e+00 -1: 53 : -1.427199e-01 8.468797e-02 7.801917e+00 -1: 54 : -1.372803e-01 8.481213e-02 7.801556e+00 -1: 55 : -1.326133e-01 8.453473e-02 7.792791e+00 -1: 56 : -1.302194e-01 8.426598e-02 7.821364e+00 -1: 57 : -1.261704e-01 8.383711e-02 7.857110e+00 -1: 58 : -1.243679e-01 8.334816e-02 8.059758e+00 -1: 59 : -1.173265e-01 8.253042e-02 8.445313e+00 -1: 60 : -1.214529e-01 8.252656e-02 8.875977e+00 -1: 61 : -1.293582e-01 8.157299e-02 8.775450e+00 -1: 62 : -1.191051e-01 8.226693e-02 8.546880e+00 -1: 63 : -1.195273e-01 8.146491e-02 9.811115e+00 -1: 64 : -1.336055e-01 8.147245e-02 8.816829e+00 -1: 65 : -1.368918e-01 7.967844e-02 8.997186e+00 -1: 66 : -1.233890e-01 8.745151e-02 7.089930e+00 -1: 67 : -1.247224e-01 8.172958e-02 8.308747e+00 -1: 68 : -1.032085e-01 8.449367e-02 7.484239e+00 -1: 69 : -2.071139e-01 9.014467e-02 7.132941e+00 -1: 70 : -2.314971e-01 8.349697e-02 8.631474e+00 -1: 71 : -2.581455e-01 9.696014e-02 6.592949e+00 -1: 72 : -6.401938e-01 1.079067e-01 7.507593e+00 -1: 73 : -7.949377e-01 1.112152e-01 8.695518e+00 -1: 74 : -8.079978e-01 9.421863e-02 8.563301e+00 -1: 75 : -1.083655e+00 1.377758e-01 9.678620e+00 -1: 76 : 1.037179e+00 2.708792e-01 8.316633e+00 -1: 77 : -8.516058e-01 1.346421e-01 8.976064e+00 -1: 78 : 1.016745e+00 1.171152e-01 6.094779e+00 -1: 79 : 7.776245e-01 1.688257e-01 6.771546e+00 -1: 80 : -7.908624e-01 1.357430e-01 1.009893e+01 -1: 81 : 1.090484e+00 1.176136e-01 8.387229e+00 -1: 82 : 1.015684e+00 1.137331e-01 8.376424e+00 -1: 83 : 1.260068e-01 1.149402e-01 6.119696e+00 -1: 84 : -1.337411e-01 9.168947e-02 6.712739e+00 -1: 85 : -3.989461e-01 1.060285e-01 5.749343e+00 -1: 86 : -9.542197e-01 1.095716e-01 5.980679e+00 -1: 87 : -9.941038e-01 1.628047e-01 6.704179e+00 -1: 88 : 2.104662e+00 2.200452e-01 7.733565e+00 -1: 89 : 9.999876e-01 1.286197e-01 9.435606e+00 -1: 90 : -7.696630e-02 1.426987e-01 8.645411e+00 -1: 91 : -9.479131e-01 1.039856e-01 8.087430e+00 -1: 92 : -1.952076e+00 1.576759e-01 8.571430e+00 -1: 93 : 1.132581e-01 1.331397e-01 7.994008e+00 -1: 94 : 2.403807e-01 9.668154e-02 8.530156e+00 -1: 95 : 1.057027e+00 1.384751e-01 1.001410e+01 -1: 96 : 3.843040e-01 1.078972e-01 1.128587e+01 -1: 97 : 7.154019e-01 1.413844e-01 8.860198e+00 -1: 98 : 2.062936e-01 2.733308e-01 1.647646e+01 -1: 99 : -4.569919e-01 5.473324e-01 1.227368e+01 -1: passed -1: Suite: Miscellaneous utility functions -1: Test: Median of odd length array ...passed -1: Test: Median of even length array ...passed -1: -1: Run Summary: Type Total Ran Passed Failed Inactive -1: suites 11 11 n/a 0 0 -1: tests 71 71 71 0 0 -1: asserts 506 506 506 0 n/a -1: -1: Elapsed time = 11.581 seconds -18/19 Test #1: unittest ......................... Passed 25.57 sec +18/19 Test #9: test_mappy ....................... Passed 14.09 sec 7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG +7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } +7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } 7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 28.72 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 14.16 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 28.76 sec +Total Test time (real) = 14.18 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' - rm -fr -- /tmp/dh-xdg-rundir-uDvxu5vS + rm -fr -- /tmp/dh-xdg-rundir-vK8ve92f make[1]: Leaving directory '/build/reproducible-path/scrappie-1.4.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake @@ -706323,7 +706359,7 @@ dh_auto_install --builddirectory build_${SIMD} ; \ done install -m0755 -d /build/reproducible-path/scrappie-1.4.2/debian/scrappie - cd build_avx2 && make -j40 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_avx2 && make -j42 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_avx2' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -706337,7 +706373,7 @@ -- Installing: /build/reproducible-path/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_avx2' install -m0755 -d /build/reproducible-path/scrappie-1.4.2/debian/scrappie - cd build_avx && make -j40 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_avx && make -j42 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_avx' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -706351,7 +706387,7 @@ -- Installing: /build/reproducible-path/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_avx' install -m0755 -d /build/reproducible-path/scrappie-1.4.2/debian/scrappie - cd build_sse4.1 && make -j40 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_sse4.1 && make -j42 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse4.1' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -706365,7 +706401,7 @@ -- Installing: /build/reproducible-path/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse4.1' install -m0755 -d /build/reproducible-path/scrappie-1.4.2/debian/scrappie - cd build_ssse3 && make -j40 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_ssse3 && make -j42 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -706379,7 +706415,7 @@ -- Installing: /build/reproducible-path/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' install -m0755 -d /build/reproducible-path/scrappie-1.4.2/debian/scrappie - cd build_sse3 && make -j40 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_sse3 && make -j42 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -706393,7 +706429,7 @@ -- Installing: /build/reproducible-path/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' install -m0755 -d /build/reproducible-path/scrappie-1.4.2/debian/scrappie - cd build_sse2 && make -j40 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_sse2 && make -j42 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -706456,11 +706492,16 @@ objcopy --compress-debug-sections debian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu/scrappie.debug chmod 0644 -- debian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu/scrappie.debug dh_strip -a -O--buildsystem=cmake - install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ec - objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-plain debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ec/68d65259d43f0c98186c55ae194bb3c12f2faa.debug - chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ec/68d65259d43f0c98186c55ae194bb3c12f2faa.debug - strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-plain - objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ec/68d65259d43f0c98186c55ae194bb3c12f2faa.debug debian/scrappie/usr/bin/scrappie-plain + install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba + objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse2 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/18acc5bbec642ad1b3d3f242d0006782dfc373.debug + chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/18acc5bbec642ad1b3d3f242d0006782dfc373.debug + strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse2 + objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/18acc5bbec642ad1b3d3f242d0006782dfc373.debug debian/scrappie/usr/bin/scrappie-sse2 + install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba + objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse4.1 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/ea86bc2bce71828f02fbffd2185b838872c229.debug + chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/ea86bc2bce71828f02fbffd2185b838872c229.debug + strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse4.1 + objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/ea86bc2bce71828f02fbffd2185b838872c229.debug debian/scrappie/usr/bin/scrappie-sse4.1 install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f0/b10f587addfc2fc952781e08640ce2b21c8ff7.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f0/b10f587addfc2fc952781e08640ce2b21c8ff7.debug @@ -706471,26 +706512,21 @@ chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/0f/e6b90a92ccd92a915cda0a1f77c426a3636d9c.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-avx objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/0f/e6b90a92ccd92a915cda0a1f77c426a3636d9c.debug debian/scrappie/usr/bin/scrappie-avx - install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba - objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse2 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/18acc5bbec642ad1b3d3f242d0006782dfc373.debug - chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/18acc5bbec642ad1b3d3f242d0006782dfc373.debug - strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse2 - objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/18acc5bbec642ad1b3d3f242d0006782dfc373.debug debian/scrappie/usr/bin/scrappie-sse2 install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/4b objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-ssse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/4b/f873b9c6e106eab359a8b6cef46820e42152a0.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/4b/f873b9c6e106eab359a8b6cef46820e42152a0.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-ssse3 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/4b/f873b9c6e106eab359a8b6cef46820e42152a0.debug debian/scrappie/usr/bin/scrappie-ssse3 + install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ec + objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-plain debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ec/68d65259d43f0c98186c55ae194bb3c12f2faa.debug + chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ec/68d65259d43f0c98186c55ae194bb3c12f2faa.debug + strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-plain + objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ec/68d65259d43f0c98186c55ae194bb3c12f2faa.debug debian/scrappie/usr/bin/scrappie-plain install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-avx2 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/51/7c7c12f93b583c22b5ec7bbafd8c717de93eba.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/51/7c7c12f93b583c22b5ec7bbafd8c717de93eba.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-avx2 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/51/7c7c12f93b583c22b5ec7bbafd8c717de93eba.debug debian/scrappie/usr/bin/scrappie-avx2 - install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba - objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse4.1 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/ea86bc2bce71828f02fbffd2185b838872c229.debug - chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/ea86bc2bce71828f02fbffd2185b838872c229.debug - strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse4.1 - objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/ba/ea86bc2bce71828f02fbffd2185b838872c229.debug debian/scrappie/usr/bin/scrappie-sse4.1 strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/scrappie/usr/lib/libscrappie.a install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.dwz @@ -706503,7 +706539,7 @@ rm -f debian/scrappie/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/scrappie/DEBIAN - dpkg-shlibdeps -Tdebian/scrappie.substvars debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-avx debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-ssse3 debian/scrappie/usr/bin/scrappie-avx2 debian/scrappie/usr/bin/scrappie-sse4.1 + dpkg-shlibdeps -Tdebian/scrappie.substvars debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-sse4.1 debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-avx debian/scrappie/usr/bin/scrappie-ssse3 debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-avx2 dh_installdeb -O--buildsystem=cmake install -m0755 -d debian/scrappie/DEBIAN rm -f debian/scrappie.debhelper.log @@ -706527,8 +706563,8 @@ cd debian/.debhelper/scrappie/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake - dpkg-deb --root-owner-group --build debian/.debhelper/scrappie/dbgsym-root .. dpkg-deb --root-owner-group --build debian/scrappie .. + dpkg-deb --root-owner-group --build debian/.debhelper/scrappie/dbgsym-root .. dpkg-deb: building package 'scrappie' in '../scrappie_1.4.2-9_amd64.deb'. dpkg-deb: building package 'scrappie-dbgsym' in '../scrappie-dbgsym_1.4.2-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../scrappie_1.4.2-9_amd64.buildinfo @@ -706538,12 +706574,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2869906/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2869906/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1897484 and its subdirectories -I: Current time: Fri Sep 26 21:31:22 -12 2025 -I: pbuilder-time-stamp: 1758965482 +I: removing directory /srv/workspace/pbuilder/2869906 and its subdirectories +I: Current time: Sat Oct 31 06:00:45 +14 2026 +I: pbuilder-time-stamp: 1793376045