Diff of the two buildlogs: -- --- b1/build.log 2025-03-28 19:07:30.533001240 +0000 +++ b2/build.log 2025-03-28 19:29:41.577163326 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Mar 28 05:51:45 -12 2025 -I: pbuilder-time-stamp: 1743184305 +I: Current time: Fri May 1 15:30:35 +14 2026 +I: pbuilder-time-stamp: 1777599035 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying r_4_4_x_tar_archive_symlink I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2757434/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/6841/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 1 01:30 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6841/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/6841/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4847458417b245e2871d092a1a4d9847' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2757434' - PS1='# ' - PS2='> ' + INVOCATION_ID=d6cd3bc51873490aa9cd177b3dbe69bb + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=6841 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/pbuilderrc_X4CL --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/b1 --logfile b1/build.log r-base_4.4.3-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/pbuilderrc_WrjE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/b2 --logfile b2/build.log r-base_4.4.3-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2757434/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/6841/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -590,7 +622,7 @@ Get: 402 http://deb.debian.org/debian unstable/main amd64 xfonts-base all 1:1.0.5+nmu1 [5895 kB] Get: 403 http://deb.debian.org/debian unstable/main amd64 xserver-common all 2:21.1.16-1 [2409 kB] Get: 404 http://deb.debian.org/debian unstable/main amd64 xvfb amd64 2:21.1.16-1 [3189 kB] -Fetched 1182 MB in 37s (31.8 MB/s) +Fetched 1182 MB in 26s (45.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) @@ -1897,8 +1929,8 @@ Setting up tzdata (2025b-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Mar 28 17:57:19 UTC 2025. -Universal Time is now: Fri Mar 28 17:57:19 UTC 2025. +Local time is now: Fri May 1 01:32:38 UTC 2026. +Universal Time is now: Fri May 1 01:32:38 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -2485,7 +2517,11 @@ fakeroot is already the newest version (1.37.1.1-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/r-base-4.4.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-base_4.4.3-1_source.changes +I: user script /srv/workspace/pbuilder/6841/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/6841/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-base-4.4.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-base_4.4.3-1_source.changes dpkg-buildpackage: info: source package r-base dpkg-buildpackage: info: source version 4.4.3-1 dpkg-buildpackage: info: source distribution unstable @@ -5520,10 +5556,10 @@ detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm using C compiler: 'gcc (Debian 14.2.0-19) 14.2.0' -make[3]: Entering directory '/tmp/Rjavareconf.BVoJDT' +make[3]: Entering directory '/tmp/Rjavareconf.9EIwGd' gcc -I"/build/reproducible-path/r-base-4.4.3/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest.o gcc -shared -L/build/reproducible-path/r-base-4.4.3/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/build/reproducible-path/r-base-4.4.3/lib -lR -make[3]: Leaving directory '/tmp/Rjavareconf.BVoJDT' +make[3]: Leaving directory '/tmp/Rjavareconf.9EIwGd' JAVA_HOME : /usr/lib/jvm/default-java @@ -15215,7 +15251,7 @@ are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex mf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/t ype1/urw/times/utmri8a.pfb> -Output written on refman.pdf (2464 pages, 6693934 bytes). +Output written on refman.pdf (2464 pages, 6693942 bytes). Transcript written on refman.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. @@ -19935,7 +19971,7 @@ are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex mf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/t ype1/urw/times/utmri8a.pfb> -Output written on refman.pdf (2464 pages, 6693820 bytes). +Output written on refman.pdf (2464 pages, 6693882 bytes). Transcript written on refman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info @@ -31981,7 +32017,7 @@ are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex mf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/t ype1/urw/times/utmri8a.pfb> -Output written on fullrefman.pdf (2464 pages, 6693934 bytes). +Output written on fullrefman.pdf (2464 pages, 6693942 bytes). Transcript written on fullrefman.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. @@ -36701,7 +36737,7 @@ are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex mf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/t ype1/urw/times/utmri8a.pfb> -Output written on fullrefman.pdf (2464 pages, 6693820 bytes). +Output written on fullrefman.pdf (2464 pages, 6693882 bytes). Transcript written on fullrefman.log. make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc' @@ -43698,9 +43734,9 @@ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 2376 --rw-r--r-- 1 pbuilder1 pbuilder1 1627200 Mar 28 07:04 libRmath.a --rwxr-xr-x 1 pbuilder1 pbuilder1 797728 Mar 28 07:04 libRmath.so -drwxr-xr-x 2 pbuilder1 pbuilder1 4096 Mar 28 07:05 pkgconfig +-rw-rw-r-- 1 pbuilder2 pbuilder2 1627200 May 1 15:52 libRmath.a +-rwxrwxr-x 1 pbuilder2 pbuilder2 797728 May 1 15:52 libRmath.so +drwxr-xr-x 2 pbuilder2 pbuilder2 4096 May 1 15:52 pkgconfig renamed 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' @@ -43760,30 +43796,30 @@ dh_installdeb -a dh_perl -a dh_shlibdeps -a -l /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/lib +dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libreadline8t64 from: /lib/x86_64-linux-gnu/libreadline.so.8 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libreadline8t64 to: /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect - diversion by libtirpc3t64 from: /lib/x86_64-linux-gnu/libtirpc.so.3 -dpkg-shlibdeps: warning: diversions involved - output may be incorrect - diversion by libtirpc3t64 to: /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged -dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged +dpkg-shlibdeps: warning: diversions involved - output may be incorrect + diversion by libtirpc3t64 from: /lib/x86_64-linux-gnu/libtirpc.so.3 +dpkg-shlibdeps: warning: diversions involved - output may be incorrect + diversion by libtirpc3t64 to: /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged *** Getting graphics engine version from 'GraphicsEngine.h' header echo R_GE_version | cpp -I ./src/include/ -include R_ext/GraphicsEngine.h | tail -n1 | sed 's/^/graphicsengine:Version=/' >> debian/r-base-core.substvars dh_gencontrol -a dh_md5sums -a dh_builddeb -a -dpkg-deb: building package 'r-base-core' in '../r-base-core_4.4.3-1_amd64.deb'. dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_4.4.3-1_amd64.deb'. -dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_4.4.3-1_amd64.deb'. dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.4.3-1_amd64.deb'. +dpkg-deb: building package 'r-base-core' in '../r-base-core_4.4.3-1_amd64.deb'. +dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_4.4.3-1_amd64.deb'. *** binary-indep *** dh_testdir -i dh_testroot -i @@ -43792,13 +43828,13 @@ dh_installdocs -v -pr-doc-html install -p -m0644 debian/copyright debian/r-doc-html/usr/share/doc/r-doc-html/copyright install -m0755 -d debian/r-doc-html/usr/share/doc-base/ - install -p -m0644 debian/r-doc-html.doc-base.ints debian/r-doc-html/usr/share/doc-base/r-doc-html.r-ints - install -p -m0644 debian/r-doc-html.doc-base.intro debian/r-doc-html/usr/share/doc-base/r-doc-html.r-intro + install -p -m0644 debian/r-doc-html.doc-base.data debian/r-doc-html/usr/share/doc-base/r-doc-html.r-data install -p -m0644 debian/r-doc-html.doc-base.faq debian/r-doc-html/usr/share/doc-base/r-doc-html.r-faq + install -p -m0644 debian/r-doc-html.doc-base.admin debian/r-doc-html/usr/share/doc-base/r-doc-html.r-admin + install -p -m0644 debian/r-doc-html.doc-base.intro debian/r-doc-html/usr/share/doc-base/r-doc-html.r-intro install -p -m0644 debian/r-doc-html.doc-base.lang debian/r-doc-html/usr/share/doc-base/r-doc-html.r-language + install -p -m0644 debian/r-doc-html.doc-base.ints debian/r-doc-html/usr/share/doc-base/r-doc-html.r-ints install -p -m0644 debian/r-doc-html.doc-base.exts debian/r-doc-html/usr/share/doc-base/r-doc-html.r-extensions - install -p -m0644 debian/r-doc-html.doc-base.admin debian/r-doc-html/usr/share/doc-base/r-doc-html.r-admin - install -p -m0644 debian/r-doc-html.doc-base.data debian/r-doc-html/usr/share/doc-base/r-doc-html.r-data dh_installchangelogs -i dh_installdirs -pr-base-dev usr/share/R/debian install -p -m 0755 debian/r-cran.mk \ @@ -43810,11 +43846,11 @@ dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'r-base' in '../r-base_4.4.3-1_all.deb'. -dpkg-deb: building package 'r-base-html' in '../r-base-html_4.4.3-1_all.deb'. dpkg-deb: building package 'r-base-dev' in '../r-base-dev_4.4.3-1_all.deb'. -dpkg-deb: building package 'r-doc-info' in '../r-doc-info_4.4.3-1_all.deb'. +dpkg-deb: building package 'r-base-html' in '../r-base-html_4.4.3-1_all.deb'. dpkg-deb: building package 'r-doc-pdf' in '../r-doc-pdf_4.4.3-1_all.deb'. dpkg-deb: building package 'r-doc-html' in '../r-doc-html_4.4.3-1_all.deb'. +dpkg-deb: building package 'r-doc-info' in '../r-doc-info_4.4.3-1_all.deb'. dpkg-deb: building package 'r-recommended' in '../r-recommended_4.4.3-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-base_4.4.3-1_amd64.buildinfo dpkg-genchanges --build=binary -O../r-base_4.4.3-1_amd64.changes @@ -43823,12 +43859,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/6841/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6841/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2757434 and its subdirectories -I: Current time: Fri Mar 28 07:07:29 -12 2025 -I: pbuilder-time-stamp: 1743188849 +I: removing directory /srv/workspace/pbuilder/6841 and its subdirectories +I: Current time: Fri May 1 15:52:40 +14 2026 +I: pbuilder-time-stamp: 1777600360