Diff of the two buildlogs: -- --- b1/build.log 2024-11-22 00:17:19.496446554 +0000 +++ b2/build.log 2024-11-22 00:40:57.272079879 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 24 18:25:45 -12 2025 -I: pbuilder-time-stamp: 1766643945 +I: Current time: Fri Nov 22 14:17:23 +14 2024 +I: pbuilder-time-stamp: 1732234643 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying python3.12 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1870085/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3868049/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 22 00:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3868049/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3868049/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1c0c8756e3b44d5a95b68d3f6bcefb5c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1870085' - PS1='# ' - PS2='> ' + INVOCATION_ID=af7dac947c9749d8b4b568f7b7c47f5a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3868049 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Xr1Q2uDN/pbuilderrc_YmRy --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Xr1Q2uDN/b1 --logfile b1/build.log obitools_3.0.1~b26+dfsg-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Xr1Q2uDN/pbuilderrc_HOFK --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Xr1Q2uDN/b2 --logfile b2/build.log obitools_3.0.1~b26+dfsg-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1870085/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3868049/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -215,7 +247,7 @@ Get: 89 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.7-1 [9976 B] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.7-1 [26.1 kB] -Fetched 58.0 MB in 23s (2530 kB/s) +Fetched 58.0 MB in 6s (10.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19966 files and directories currently installed.) @@ -527,8 +559,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Dec 25 06:28:40 UTC 2025. -Universal Time is now: Thu Dec 25 06:28:40 UTC 2025. +Local time is now: Fri Nov 22 00:19:45 UTC 2024. +Universal Time is now: Fri Nov 22 00:19:45 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -608,7 +640,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/3868049/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3868049/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-3_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -636,85 +672,85 @@ dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Compiling python/obitools3/utils.pyx because it changed. -Compiling python/obitools3/libalign/_solexapairend.pyx because it changed. -Compiling python/obitools3/libalign/_assemble.pyx because it changed. -Compiling python/obitools3/libalign/_qsassemble.pyx because it changed. -Compiling python/obitools3/libalign/_nws.pyx because it changed. -Compiling python/obitools3/libalign/_dynamic.pyx because it changed. -Compiling python/obitools3/libalign/shifted_ali.pyx because it changed. -Compiling python/obitools3/libalign/apat_pattern.pyx because it changed. -Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed. -Compiling python/obitools3/libalign/_freeendgap.pyx because it changed. -Compiling python/obitools3/libalign/_qsrassemble.pyx because it changed. -Compiling python/obitools3/libalign/_rassemble.pyx because it changed. -Compiling python/obitools3/apps/progress.pyx because it changed. -Compiling python/obitools3/apps/logging.pyx because it changed. -Compiling python/obitools3/apps/temp.pyx because it changed. -Compiling python/obitools3/apps/command.pyx because it changed. +Compiling python/obitools3/dms/dms.pyx because it changed. +Compiling python/obitools3/dms/obiseq.pyx because it changed. +Compiling python/obitools3/dms/object.pyx because it changed. +Compiling python/obitools3/dms/taxo/taxo.pyx because it changed. +Compiling python/obitools3/dms/view/view.pyx because it changed. +Compiling python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx because it changed. +Compiling python/obitools3/dms/column/column.pyx because it changed. +Compiling python/obitools3/dms/column/column_idx.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/str.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/int.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/seq.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/qual.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/char.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/bool.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/float.pyx because it changed. Compiling python/obitools3/apps/arguments.pyx because it changed. Compiling python/obitools3/apps/config.pyx because it changed. -Compiling python/obitools3/format/fasta.pyx because it changed. -Compiling python/obitools3/format/fastq.pyx because it changed. -Compiling python/obitools3/format/header.pyx because it changed. -Compiling python/obitools3/format/tab.pyx because it changed. -Compiling python/obitools3/files/linebuffer.pyx because it changed. -Compiling python/obitools3/files/uncompress.pyx because it changed. -Compiling python/obitools3/files/universalopener.pyx because it changed. -Compiling python/obitools3/commands/history.pyx because it changed. -Compiling python/obitools3/commands/ls.pyx because it changed. -Compiling python/obitools3/commands/uniq.pyx because it changed. -Compiling python/obitools3/commands/sort.pyx because it changed. -Compiling python/obitools3/commands/ngsfilter.pyx because it changed. +Compiling python/obitools3/apps/logging.pyx because it changed. +Compiling python/obitools3/apps/command.pyx because it changed. +Compiling python/obitools3/apps/progress.pyx because it changed. +Compiling python/obitools3/apps/temp.pyx because it changed. +Compiling python/obitools3/uri/decode.pyx because it changed. +Compiling python/obitools3/parsers/genbank.pyx because it changed. +Compiling python/obitools3/parsers/header.pyx because it changed. +Compiling python/obitools3/parsers/ngsfilter.pyx because it changed. +Compiling python/obitools3/parsers/universal.pyx because it changed. +Compiling python/obitools3/parsers/embl_genbank_features.pyx because it changed. +Compiling python/obitools3/parsers/embl.pyx because it changed. +Compiling python/obitools3/parsers/tab.pyx because it changed. +Compiling python/obitools3/parsers/fastq.pyx because it changed. +Compiling python/obitools3/parsers/fasta.pyx because it changed. Compiling python/obitools3/commands/less.pyx because it changed. -Compiling python/obitools3/commands/build_ref_db.pyx because it changed. +Compiling python/obitools3/commands/test.pyx because it changed. +Compiling python/obitools3/commands/rm.pyx because it changed. +Compiling python/obitools3/commands/import.pyx because it changed. +Compiling python/obitools3/commands/stats.pyx because it changed. +Compiling python/obitools3/commands/ngsfilter.pyx because it changed. Compiling python/obitools3/commands/annotate.pyx because it changed. -Compiling python/obitools3/commands/addtaxids.pyx because it changed. -Compiling python/obitools3/commands/tail.pyx because it changed. -Compiling python/obitools3/commands/export.pyx because it changed. -Compiling python/obitools3/commands/clean_dms.pyx because it changed. +Compiling python/obitools3/commands/align.pyx because it changed. +Compiling python/obitools3/commands/ls.pyx because it changed. +Compiling python/obitools3/commands/sort.pyx because it changed. Compiling python/obitools3/commands/ecopcr.pyx because it changed. -Compiling python/obitools3/commands/test.pyx because it changed. +Compiling python/obitools3/commands/split.pyx because it changed. +Compiling python/obitools3/commands/tail.pyx because it changed. Compiling python/obitools3/commands/count.pyx because it changed. -Compiling python/obitools3/commands/clean.pyx because it changed. -Compiling python/obitools3/commands/ecotag.pyx because it changed. -Compiling python/obitools3/commands/import.pyx because it changed. +Compiling python/obitools3/commands/alignpairedend.pyx because it changed. Compiling python/obitools3/commands/head.pyx because it changed. -Compiling python/obitools3/commands/stats.pyx because it changed. +Compiling python/obitools3/commands/grep.pyx because it changed. Compiling python/obitools3/commands/taxonomy.pyx because it changed. +Compiling python/obitools3/commands/uniq.pyx because it changed. Compiling python/obitools3/commands/cat.pyx because it changed. -Compiling python/obitools3/commands/alignpairedend.pyx because it changed. -Compiling python/obitools3/commands/grep.pyx because it changed. -Compiling python/obitools3/commands/split.pyx because it changed. -Compiling python/obitools3/commands/rm.pyx because it changed. -Compiling python/obitools3/commands/align.pyx because it changed. -Compiling python/obitools3/parsers/embl.pyx because it changed. -Compiling python/obitools3/parsers/ngsfilter.pyx because it changed. -Compiling python/obitools3/parsers/universal.pyx because it changed. -Compiling python/obitools3/parsers/genbank.pyx because it changed. -Compiling python/obitools3/parsers/fasta.pyx because it changed. -Compiling python/obitools3/parsers/fastq.pyx because it changed. -Compiling python/obitools3/parsers/header.pyx because it changed. -Compiling python/obitools3/parsers/tab.pyx because it changed. -Compiling python/obitools3/parsers/embl_genbank_features.pyx because it changed. -Compiling python/obitools3/dms/dms.pyx because it changed. -Compiling python/obitools3/dms/object.pyx because it changed. -Compiling python/obitools3/dms/obiseq.pyx because it changed. -Compiling python/obitools3/dms/column/column.pyx because it changed. -Compiling python/obitools3/dms/column/column_idx.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/bool.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/char.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/qual.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/seq.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/float.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/str.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/int.pyx because it changed. -Compiling python/obitools3/dms/taxo/taxo.pyx because it changed. -Compiling python/obitools3/dms/view/view.pyx because it changed. -Compiling python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx because it changed. -Compiling python/obitools3/uri/decode.pyx because it changed. -Compiling python/obitools3/writers/fasta.pyx because it changed. -Compiling python/obitools3/writers/fastq.pyx because it changed. +Compiling python/obitools3/commands/build_ref_db.pyx because it changed. +Compiling python/obitools3/commands/clean_dms.pyx because it changed. +Compiling python/obitools3/commands/history.pyx because it changed. +Compiling python/obitools3/commands/ecotag.pyx because it changed. +Compiling python/obitools3/commands/addtaxids.pyx because it changed. +Compiling python/obitools3/commands/clean.pyx because it changed. +Compiling python/obitools3/commands/export.pyx because it changed. +Compiling python/obitools3/files/uncompress.pyx because it changed. +Compiling python/obitools3/files/universalopener.pyx because it changed. +Compiling python/obitools3/files/linebuffer.pyx because it changed. +Compiling python/obitools3/libalign/_solexapairend.pyx because it changed. +Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed. +Compiling python/obitools3/libalign/_freeendgap.pyx because it changed. +Compiling python/obitools3/libalign/_dynamic.pyx because it changed. +Compiling python/obitools3/libalign/_rassemble.pyx because it changed. +Compiling python/obitools3/libalign/apat_pattern.pyx because it changed. +Compiling python/obitools3/libalign/shifted_ali.pyx because it changed. +Compiling python/obitools3/libalign/_nws.pyx because it changed. +Compiling python/obitools3/libalign/_assemble.pyx because it changed. +Compiling python/obitools3/libalign/_qsassemble.pyx because it changed. +Compiling python/obitools3/libalign/_qsrassemble.pyx because it changed. Compiling python/obitools3/writers/tab.pyx because it changed. +Compiling python/obitools3/writers/fastq.pyx because it changed. +Compiling python/obitools3/writers/fasta.pyx because it changed. +Compiling python/obitools3/format/header.pyx because it changed. +Compiling python/obitools3/format/tab.pyx because it changed. +Compiling python/obitools3/format/fastq.pyx because it changed. +Compiling python/obitools3/format/fasta.pyx because it changed. [ 1/80] Cythonizing python/obitools3/apps/arguments.pyx [ 2/80] Cythonizing python/obitools3/apps/command.pyx [ 3/80] Cythonizing python/obitools3/apps/config.pyx @@ -818,7 +854,7 @@ -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (0.6s) +-- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -963,295 +999,295 @@ creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign -copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign -copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps -copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups -copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format -copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files -copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands -copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers -copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column -copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column -copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi -copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column +copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column +copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi +copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps +copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups +copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers +copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands +copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files +copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign +copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign +copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format +copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format running build_ext building 'obitools3.utils' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/utils.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/utils.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._solexapairend' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._assemble' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._qsassemble' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._nws' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._dynamic' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign.shifted_ali' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign.apat_pattern' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._freeendgapfm' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._freeendgap' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._qsrassemble' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._rassemble' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so -building 'obitools3.apps.progress' extension +building 'obitools3.dms.dms' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.obiseq' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.object' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/object.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.taxo.taxo' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.view.view' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.column' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.column_idx' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.str' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.int' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.seq' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.qual' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.char' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.bool' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.float' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so +building 'obitools3.apps.arguments' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/progress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/progress.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/arguments.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so +building 'obitools3.apps.config' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/config.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.logging' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/logging.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/logging.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/logging.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so -building 'obitools3.apps.temp' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/temp.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.command' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/command.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/command.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/command.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so -building 'obitools3.apps.arguments' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/arguments.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so -building 'obitools3.apps.config' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/config.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so -building 'obitools3.format.fasta' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/format -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so -building 'obitools3.format.fastq' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so -building 'obitools3.format.header' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so -building 'obitools3.format.tab' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so -building 'obitools3.files.linebuffer' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/files -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so -building 'obitools3.files.uncompress' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so -building 'obitools3.files.universalopener' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.history' extension +building 'obitools3.apps.progress' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/progress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/progress.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so +building 'obitools3.apps.temp' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/temp.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so +building 'obitools3.uri.decode' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.genbank' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.header' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.ngsfilter' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.universal' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.embl_genbank_features' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.embl' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.tab' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.fastq' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.fasta' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.less' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/history.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.ls' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ls.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.uniq' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.sort' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/sort.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/less.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.test' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/test.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.rm' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/rm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.import' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/import.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.stats' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/stats.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ngsfilter' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.less' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/less.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.build_ref_db' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.annotate' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.addtaxids' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.tail' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/tail.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/tail.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.export' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/export.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.clean_dms' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.align' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/align.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.ls' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ls.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.sort' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/sort.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ecopcr' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.test' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/test.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.split' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/split.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.tail' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/tail.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/tail.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.count' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/count.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/count.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.clean' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.ecotag' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.import' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/import.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.alignpairedend' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.head' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/head.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/head.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.stats' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/stats.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.grep' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/grep.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.taxonomy' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.uniq' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.cat' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/cat.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/cat.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.alignpairedend' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.grep' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/grep.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.split' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/split.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.rm' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/rm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.align' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/align.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.embl' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.ngsfilter' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.universal' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.genbank' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.fasta' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.fastq' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.header' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.tab' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.embl_genbank_features' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.dms' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.object' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/object.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.obiseq' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.column' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.column_idx' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.bool' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.char' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.qual' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.seq' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.float' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.str' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.int' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.taxo.taxo' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.view.view' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so -building 'obitools3.uri.decode' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so -building 'obitools3.writers.fasta' extension +building 'obitools3.commands.build_ref_db' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.clean_dms' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.history' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/history.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.ecotag' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.addtaxids' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.clean' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.export' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/export.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so +building 'obitools3.files.uncompress' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/files +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so +building 'obitools3.files.universalopener' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so +building 'obitools3.files.linebuffer' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._solexapairend' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._freeendgapfm' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._freeendgap' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._dynamic' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._rassemble' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign.apat_pattern' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign.shifted_ali' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._nws' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._assemble' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._qsassemble' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._qsrassemble' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so +building 'obitools3.writers.tab' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.writers.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so -building 'obitools3.writers.tab' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so +building 'obitools3.writers.fasta' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so +building 'obitools3.format.header' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/format +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so +building 'obitools3.format.tab' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so +building 'obitools3.format.fastq' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so +building 'obitools3.format.fasta' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/obi -> build/scripts-3.12 @@ -1305,7 +1341,7 @@ -- Configuring done (0.0s) --- Generating done (0.3s) +-- Generating done (0.1s) -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' @@ -1339,140 +1375,140 @@ running install_lib creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/version.py to version.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-312.pyc +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/version.py to version.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating python/OBITools3.egg-info @@ -1524,14 +1560,14 @@ dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' -dpkg-shlibdeps: warning: symbol log used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dpkg-shlibdeps: warning: symbol log10 used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries +dpkg-shlibdeps: warning: symbol log used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-3_amd64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-3_amd64.deb'. +dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1539,12 +1575,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3868049/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3868049/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1870085 and its subdirectories -I: Current time: Wed Dec 24 18:40:18 -12 2025 -I: pbuilder-time-stamp: 1766644818 +I: removing directory /srv/workspace/pbuilder/3868049 and its subdirectories +I: Current time: Fri Nov 22 14:40:56 +14 2024 +I: pbuilder-time-stamp: 1732236056