Diff of the two buildlogs: -- --- b1/build.log 2024-10-25 10:21:30.274706609 +0000 +++ b2/build.log 2024-10-25 10:31:22.481657371 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Nov 27 04:41:01 -12 2025 -I: pbuilder-time-stamp: 1764261661 +I: Current time: Sat Oct 26 00:21:35 +14 2024 +I: pbuilder-time-stamp: 1729851695 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -35,52 +35,84 @@ dpkg-source: info: applying use_pickle.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2858336/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1887157/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 25 10:21 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1887157/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1887157/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='82b74559a1d74a82965f5d2621906792' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2858336' - PS1='# ' - PS2='> ' + INVOCATION_ID=241f236a80504844811fdc65b6ca6a0e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1887157 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/pbuilderrc_zSoE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/b1 --logfile b1/build.log obitools_1.2.13+dfsg-9.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/pbuilderrc_3Znt --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/b2 --logfile b2/build.log obitools_1.2.13+dfsg-9.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2858336/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1887157/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -255,7 +287,7 @@ Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-wheel-whl all 0.44.0-2 [70.1 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-virtualenv all 20.27.0+ds-1 [71.1 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.44.0-2 [53.4 kB] -Fetched 57.0 MB in 14s (3995 kB/s) +Fetched 57.0 MB in 16s (3545 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19947 files and directories currently installed.) @@ -666,8 +698,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Nov 27 16:42:25 UTC 2025. -Universal Time is now: Thu Nov 27 16:42:25 UTC 2025. +Local time is now: Fri Oct 25 10:24:44 UTC 2024. +Universal Time is now: Fri Oct 25 10:24:44 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -794,7 +826,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/obitools-1.2.13+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_1.2.13+dfsg-9_source.changes +I: user script /srv/workspace/pbuilder/1887157/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1887157/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/obitools-1.2.13+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../obitools_1.2.13+dfsg-9_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 1.2.13+dfsg-9 dpkg-buildpackage: info: source distribution unstable @@ -826,65 +862,65 @@ /build/reproducible-path/obitools-1.2.13+dfsg/distutils.ext/obidistutils/command/build_scripts.py:21: SyntaxWarning: invalid escape sequence '\#' """Copy each script listed in 'self.scripts'; if it's marked as a ['src/obitools/_obitools.pyx'] -['src/obitools/format/_format.pyx'] -['src/obitools/format/genericparser/_genericparser.pyx'] -['src/obitools/utils/_utils.pyx'] -['src/obitools/fastq/_fastq.pyx'] -['src/obitools/word/_binary.pyx'] -@@@@> ['src/obitools/word/_readindex.h'] -['src/obitools/word/_readindex.pyx'] -['src/obitools/align/_assemble.pyx'] -@@@@> ['src/obitools/align/_lcs.h'] -['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_gprofilenws.pyx'] -['src/obitools/align/_qsassemble.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] -@@@@> ['src/obitools/align/_sse.h'] -['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] +['src/obitools/align/_rassemble.pyx'] +@@@@> ['src/obitools/align/_lcs.h'] +['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c'] +['src/obitools/align/_qsrassemble.pyx'] +['src/obitools/align/_qsassemble.pyx'] +['src/obitools/align/_assemble.pyx'] +['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_freeendgap.pyx'] -['src/obitools/align/_profilenws.pyx'] -['src/obitools/align/_qsrassemble.pyx'] -['src/obitools/align/_rassemble.pyx'] ['src/obitools/align/_codonnws.pyx'] -['src/obitools/align/_nwsdnabyprot.pyx'] -['src/obitools/tools/_solexapairend.pyx'] +['src/obitools/align/_profilenws.pyx'] +@@@@> ['src/obitools/align/_sse.h'] +['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] +['src/obitools/format/_format.pyx'] +['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] +['src/obitools/fastq/_fastq.pyx'] +['src/obitools/utils/_utils.pyx'] ['src/obitools/fasta/_fasta.pyx'] +['src/obitools/tools/_solexapairend.pyx'] +@@@@> ['src/obitools/word/_readindex.h'] +['src/obitools/word/_readindex.pyx'] +['src/obitools/word/_binary.pyx'] ['src/obitools/profile/_profile.pyx'] running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build ['src/obitools/_obitools.pyx'] -['src/obitools/format/_format.pyx'] -['src/obitools/format/genericparser/_genericparser.pyx'] -['src/obitools/utils/_utils.pyx'] -['src/obitools/fastq/_fastq.pyx'] -['src/obitools/word/_binary.pyx'] -@@@@> ['src/obitools/word/_readindex.h'] -['src/obitools/word/_readindex.pyx'] -['src/obitools/align/_assemble.pyx'] -@@@@> ['src/obitools/align/_lcs.h'] -['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_gprofilenws.pyx'] -['src/obitools/align/_qsassemble.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] -@@@@> ['src/obitools/align/_sse.h'] -['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] +['src/obitools/align/_rassemble.pyx'] +@@@@> ['src/obitools/align/_lcs.h'] +['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c'] +['src/obitools/align/_qsrassemble.pyx'] +['src/obitools/align/_qsassemble.pyx'] +['src/obitools/align/_assemble.pyx'] +['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_freeendgap.pyx'] -['src/obitools/align/_profilenws.pyx'] -['src/obitools/align/_qsrassemble.pyx'] -['src/obitools/align/_rassemble.pyx'] ['src/obitools/align/_codonnws.pyx'] -['src/obitools/align/_nwsdnabyprot.pyx'] -['src/obitools/tools/_solexapairend.pyx'] +['src/obitools/align/_profilenws.pyx'] +@@@@> ['src/obitools/align/_sse.h'] +['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] +['src/obitools/format/_format.pyx'] +['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] +['src/obitools/fastq/_fastq.pyx'] +['src/obitools/utils/_utils.pyx'] ['src/obitools/fasta/_fasta.pyx'] +['src/obitools/tools/_solexapairend.pyx'] +@@@@> ['src/obitools/word/_readindex.h'] +['src/obitools/word/_readindex.pyx'] +['src/obitools/word/_binary.pyx'] ['src/obitools/profile/_profile.pyx'] running build @@ -908,217 +944,217 @@ Your CPU is in mode : b'-DLITTLE_END' running build_py creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools +copying src/obitools/collections.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools +copying src/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools +copying src/obitools/fast.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools +copying src/obitools/SVGdraw.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/gzip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools -copying src/obitools/version.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/solexaPairEnd.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools -copying src/obitools/decorator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools -copying src/obitools/SVGdraw.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools -copying src/obitools/zipfile.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools -copying src/obitools/sample.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools -copying src/obitools/fast.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools -copying src/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools -copying src/obitools/collections.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage -copying src/obitools/barcodecoverage/calcBc.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage -copying src/obitools/barcodecoverage/drawBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage -copying src/obitools/barcodecoverage/findErrors.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage -copying src/obitools/barcodecoverage/writeBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage -copying src/obitools/barcodecoverage/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage -copying src/obitools/barcodecoverage/readFiles.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage +copying src/obitools/version.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools +copying src/obitools/sample.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools +copying src/obitools/zipfile.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools +copying src/obitools/decorator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr +copying src/obitools/ecopcr/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr +copying src/obitools/ecopcr/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr +copying src/obitools/ecopcr/annotation.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr +copying src/obitools/ecopcr/sequence.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr +copying src/obitools/ecopcr/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa +copying src/obitools/solexa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast +copying src/obitools/blast/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit +copying src/obitools/unit/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools +copying src/obitools/unit/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode +copying src/obitools/ecobarcode/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode +copying src/obitools/ecobarcode/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode +copying src/obitools/ecobarcode/ecotag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode +copying src/obitools/ecobarcode/databases.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode +copying src/obitools/ecobarcode/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode +copying src/obitools/ecobarcode/rawdata.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel +copying src/obitools/parallel/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel +copying src/obitools/parallel/jobqueue.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/dnahash copying src/obitools/dnahash/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/dnahash -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree -copying src/obitools/tree/layout.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree -copying src/obitools/tree/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree -copying src/obitools/tree/unrooted.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree -copying src/obitools/tree/dot.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree -copying src/obitools/tree/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree -copying src/obitools/tree/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align +copying src/obitools/align/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align +copying src/obitools/align/ssearch.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align +copying src/obitools/align/homopolymere.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa +copying src/obitools/goa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa +copying src/obitools/goa/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format -copying src/obitools/format/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format copying src/obitools/format/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format +copying src/obitools/format/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence -copying src/obitools/format/sequence/fastq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence -copying src/obitools/format/sequence/fnaqual.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence -copying src/obitools/format/sequence/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/embl.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence -copying src/obitools/format/sequence/genbank.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/tagmatcher.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology -copying src/obitools/format/ontology/go_obo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology -copying src/obitools/format/ontology/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology +copying src/obitools/format/sequence/fastq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence +copying src/obitools/format/sequence/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence +copying src/obitools/format/sequence/genbank.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence +copying src/obitools/format/sequence/fnaqual.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser copying src/obitools/format/genericparser/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils -copying src/obitools/utils/bioseq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils -copying src/obitools/utils/crc64.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils -copying src/obitools/utils/iterator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils -copying src/obitools/utils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag -copying src/obitools/ecotag/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag -copying src/obitools/ecotag/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils -copying src/obitools/eutils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology +copying src/obitools/format/ontology/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology +copying src/obitools/format/ontology/go_obo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher +copying src/obitools/tagmatcher/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher -copying src/obitools/tagmatcher/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq -copying src/obitools/fastq/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location +copying src/obitools/location/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location +copying src/obitools/location/feature.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table -copying src/obitools/table/csv.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table copying src/obitools/table/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit -copying src/obitools/unit/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools -copying src/obitools/unit/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual -copying src/obitools/fnaqual/quality.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual -copying src/obitools/fnaqual/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual -copying src/obitools/fnaqual/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo -copying src/obitools/obo/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo -copying src/obitools/obo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go -copying src/obitools/obo/go/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go -copying src/obitools/obo/go/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word -copying src/obitools/word/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word -copying src/obitools/word/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word -copying src/obitools/word/predicate.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align -copying src/obitools/align/homopolymere.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align -copying src/obitools/align/ssearch.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align -copying src/obitools/align/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align +copying src/obitools/table/csv.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics -copying src/obitools/statistics/hypergeometric.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics copying src/obitools/statistics/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics copying src/obitools/statistics/noncentralhypergeo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa -copying src/obitools/solexa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast -copying src/obitools/blast/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location -copying src/obitools/location/feature.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location -copying src/obitools/location/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools -copying src/obitools/tools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools -copying src/obitools/tools/solexapairend.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder -copying src/obitools/sequenceencoder/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo -copying src/obitools/thermo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas -copying src/obitools/obischemas/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas -copying src/obitools/obischemas/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb -copying src/obitools/obischemas/kb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb -copying src/obitools/obischemas/kb/extern.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive -copying src/obitools/interactive/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb -copying src/obitools/seqdb/dnaparser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb -copying src/obitools/seqdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl -copying src/obitools/seqdb/embl/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl -copying src/obitools/seqdb/embl/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb -copying src/obitools/seqdb/blastdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank -copying src/obitools/seqdb/genbank/ncbi.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank -copying src/obitools/seqdb/genbank/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank -copying src/obitools/seqdb/genbank/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank +copying src/obitools/statistics/hypergeometric.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph -copying src/obitools/graph/dag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph -copying src/obitools/graph/rootedtree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph copying src/obitools/graph/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph +copying src/obitools/graph/dag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph copying src/obitools/graph/tree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph +copying src/obitools/graph/rootedtree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms -copying src/obitools/graph/algorithms/clique.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms -copying src/obitools/graph/algorithms/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/component.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms +copying src/obitools/graph/algorithms/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/compact.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms +copying src/obitools/graph/algorithms/clique.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout copying src/obitools/graph/layout/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout copying src/obitools/graph/layout/radialtree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny +copying src/obitools/phylogeny/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny +copying src/obitools/phylogeny/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb +copying src/obitools/seqdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb +copying src/obitools/seqdb/dnaparser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank +copying src/obitools/seqdb/genbank/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank +copying src/obitools/seqdb/genbank/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank +copying src/obitools/seqdb/genbank/ncbi.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb +copying src/obitools/seqdb/blastdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl +copying src/obitools/seqdb/embl/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl +copying src/obitools/seqdb/embl/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage +copying src/obitools/barcodecoverage/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage +copying src/obitools/barcodecoverage/findErrors.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage +copying src/obitools/barcodecoverage/calcBc.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage +copying src/obitools/barcodecoverage/drawBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage +copying src/obitools/barcodecoverage/readFiles.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage +copying src/obitools/barcodecoverage/writeBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo +copying src/obitools/thermo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options +copying src/obitools/options/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options +copying src/obitools/options/bioseqedittag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options +copying src/obitools/options/bioseqfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options +copying src/obitools/options/taxonomyfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options +copying src/obitools/options/bioseqcutter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils +copying src/obitools/eutils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag +copying src/obitools/ecotag/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag +copying src/obitools/ecotag/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas +copying src/obitools/obischemas/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas +copying src/obitools/obischemas/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb +copying src/obitools/obischemas/kb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb +copying src/obitools/obischemas/kb/extern.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment copying src/obitools/alignment/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment copying src/obitools/alignment/ace.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual +copying src/obitools/fnaqual/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual +copying src/obitools/fnaqual/quality.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual +copying src/obitools/fnaqual/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq +copying src/obitools/fastq/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive +copying src/obitools/interactive/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder +copying src/obitools/sequenceencoder/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo +copying src/obitools/obo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo +copying src/obitools/obo/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go +copying src/obitools/obo/go/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go +copying src/obitools/obo/go/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils +copying src/obitools/utils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils +copying src/obitools/utils/iterator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils +copying src/obitools/utils/crc64.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils +copying src/obitools/utils/bioseq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta +copying src/obitools/fasta/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances -copying src/obitools/distances/phylip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances -copying src/obitools/distances/observed.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances copying src/obitools/distances/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances +copying src/obitools/distances/phylip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances copying src/obitools/distances/r.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr -copying src/obitools/ecopcr/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr -copying src/obitools/ecopcr/annotation.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr -copying src/obitools/ecopcr/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr -copying src/obitools/ecopcr/sequence.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr -copying src/obitools/ecopcr/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa -copying src/obitools/goa/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa -copying src/obitools/goa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options -copying src/obitools/options/bioseqedittag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options -copying src/obitools/options/bioseqcutter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options -copying src/obitools/options/taxonomyfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options -copying src/obitools/options/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options -copying src/obitools/options/bioseqfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta -copying src/obitools/fasta/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile -copying src/obitools/profile/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto -copying src/obitools/carto/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode -copying src/obitools/ecobarcode/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode -copying src/obitools/ecobarcode/ecotag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode -copying src/obitools/ecobarcode/databases.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode -copying src/obitools/ecobarcode/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode -copying src/obitools/ecobarcode/rawdata.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode -copying src/obitools/ecobarcode/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode +copying src/obitools/distances/observed.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools +copying src/obitools/tools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools +copying src/obitools/tools/solexapairend.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word +copying src/obitools/word/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word +copying src/obitools/word/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word +copying src/obitools/word/predicate.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding -copying src/obitools/metabarcoding/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding copying src/obitools/metabarcoding/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny -copying src/obitools/phylogeny/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny -copying src/obitools/phylogeny/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny -creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel -copying src/obitools/parallel/jobqueue.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel -copying src/obitools/parallel/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel +copying src/obitools/metabarcoding/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto +copying src/obitools/carto/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree +copying src/obitools/tree/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree +copying src/obitools/tree/layout.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree +copying src/obitools/tree/unrooted.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree +copying src/obitools/tree/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree +copying src/obitools/tree/dot.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree +copying src/obitools/tree/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree +creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile +copying src/obitools/profile/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile running build_ext obitools._obitools src/obitools/_obitools.pyx ok -obitools.format._format src/obitools/format/_format.pyx ok -obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok -obitools.utils._utils src/obitools/utils/_utils.pyx ok -obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok -obitools.word._binary src/obitools/word/_binary.pyx ok -obitools.word._readindex src/obitools/word/_readindex.pyx ok -obitools.align._assemble src/obitools/align/_assemble.pyx ok +obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok +obitools.align._nws src/obitools/align/_nws.pyx ok +obitools.align._dynamic src/obitools/align/_dynamic.pyx ok +obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._lcs src/obitools/align/_lcs.pyx ok obitools.align._lcs src/obitools/align/_lcs.ext.3.c ok -obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok -obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok obitools.align._lcs src/obitools/align/_lcs.ext.4.c ok -obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok +obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok +obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok +obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok obitools.align._qsassemble src/obitools/align/_qsassemble.pyx ok -obitools.align._nws src/obitools/align/_nws.pyx ok -obitools.align._dynamic src/obitools/align/_dynamic.pyx ok -obitools.align._upperbond src/obitools/align/_upperbond.pyx ok -obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok +obitools.align._assemble src/obitools/align/_assemble.pyx ok +obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok obitools.align._freeendgapfm src/obitools/align/_freeendgapfm.pyx ok obitools.align._freeendgap src/obitools/align/_freeendgap.pyx ok -obitools.align._profilenws src/obitools/align/_profilenws.pyx ok -obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok -obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._codonnws src/obitools/align/_codonnws.pyx ok -obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok -obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok +obitools.align._profilenws src/obitools/align/_profilenws.pyx ok +obitools.align._upperbond src/obitools/align/_upperbond.pyx ok +obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok +obitools.format._format src/obitools/format/_format.pyx ok +obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok obitools.options._options src/obitools/options/_options.pyx ok obitools.options._bioseqfilter src/obitools/options/_bioseqfilter.pyx ok +obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok +obitools.utils._utils src/obitools/utils/_utils.pyx ok obitools.fasta._fasta src/obitools/fasta/_fasta.pyx ok +obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok +obitools.word._readindex src/obitools/word/_readindex.pyx ok +obitools.word._binary src/obitools/word/_binary.pyx ok obitools.profile._profile src/obitools/profile/_profile.pyx ok #####> ['src/obitools/_obitools.pyx'] cythoning src/obitools/_obitools.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/_obitools.c @@ -1127,100 +1163,29 @@ creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/_obitools.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/_obitools.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/_obitools.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/_obitools.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/format/_format.pyx'] -cythoning src/obitools/format/_format.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.c -creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/format -building 'obitools.format._format' extension -creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/_format.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/format/genericparser/_genericparser.pyx'] -cythoning src/obitools/format/genericparser/_genericparser.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.c -creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser -building 'obitools.format.genericparser._genericparser' extension -creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/_genericparser.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/utils/_utils.pyx'] -cythoning src/obitools/utils/_utils.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c -creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils -building 'obitools.utils._utils' extension -creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.o -build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c: In function '__pyx_f_8obitools_5utils_6_utils_progressBar': -build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3864:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] - 3864 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); - | ~~^~ ~~~~~~~~~~~~~~~~ - | | | - | int long long unsigned int -build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3864:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] - 3864 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); - | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ - | | | - | int long long unsigned int -build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3905:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] - 3905 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); - | ~~^~ ~~~~~~~~~~~~~~~~ - | | | - | int long long unsigned int -build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3905:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] - 3905 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); - | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ - | | | - | int long long unsigned int -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/_utils.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/fastq/_fastq.pyx'] -cythoning src/obitools/fastq/_fastq.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.c -creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq -building 'obitools.fastq._fastq' extension -creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/_fastq.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/word/_binary.pyx'] -cythoning src/obitools/word/_binary.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c -creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/word -building 'obitools.word._binary' extension -creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.o -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c: In function '__pyx_f_8obitools_4word_7_binary_bin2str': -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c:1841:33: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] - 1841 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { - | ^ -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_binary.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/word/_readindex.pyx'] -cythoning src/obitools/word/_readindex.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c -building 'obitools.word._readindex' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/word -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.o -msse2 -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c: In function '__pyx_gb_8obitools_4word_10_readindex_9ReadIndex_14generator': -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:6589:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 6589 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { - | ^ -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c: In function '__pyx_gb_8obitools_4word_10_readindex_9ReadIndex_17generator1': -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:6787:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 6787 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { - | ^ -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c: In function '__pyx_pf_8obitools_4word_10_readindex_9ReadIndex_8load': -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5495:10: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 5495 | (void)(fread((&__pyx_v_ltbuffer), (sizeof(size_t)), 1, __pyx_v_f)); - | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5564:10: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 5564 | (void)(fread(__pyx_v_tcbuffer, 1, __pyx_v_ltbuffer, __pyx_v_f)); - | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5749:10: warning: pointer '__pyx_v_f' may be used after 'fclose' [-Wuse-after-free] - 5749 | (void)(fclose(__pyx_v_f)); - | ~^~~~~~~~~~~~~~~~~~ -build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5616:10: note: call to 'fclose' here - 5616 | (void)(fclose(__pyx_v_f)); - | ~^~~~~~~~~~~~~~~~~~ -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_readindex.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/align/_assemble.pyx'] -cythoning src/obitools/align/_assemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.c +#####> ['src/obitools/align/_gprofilenws.pyx'] +cythoning src/obitools/align/_gprofilenws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/align -building 'obitools.align._assemble' extension +building 'obitools.align._gprofilenws' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_assemble.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.4.c'] +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_gprofilenws.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/align/_nws.pyx'] +cythoning src/obitools/align/_nws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.c +building 'obitools.align._nws' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nws.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/align/_dynamic.pyx'] +cythoning src/obitools/align/_dynamic.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.c +building 'obitools.align._dynamic' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_dynamic.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/align/_rassemble.pyx'] +cythoning src/obitools/align/_rassemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.c +building 'obitools.align._rassemble' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_rassemble.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c'] cythoning src/obitools/align/_lcs.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_lcs.c building 'obitools.align._lcs' extension creating build/temp.linux-x86_64-cpython-312/src/obitools/align @@ -1291,36 +1256,33 @@ 96 | if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_lcs.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.1.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.2.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.3.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.4.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_lcs.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/align/_gprofilenws.pyx'] -cythoning src/obitools/align/_gprofilenws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.c -building 'obitools.align._gprofilenws' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_gprofilenws.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/align/_qsrassemble.pyx'] +cythoning src/obitools/align/_qsrassemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.c +building 'obitools.align._qsrassemble' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsrassemble.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_qsassemble.pyx'] cythoning src/obitools/align/_qsassemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.c building 'obitools.align._qsassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsassemble.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/align/_nws.pyx'] -cythoning src/obitools/align/_nws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.c -building 'obitools.align._nws' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nws.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/align/_dynamic.pyx'] -cythoning src/obitools/align/_dynamic.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.c -building 'obitools.align._dynamic' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_dynamic.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] -cythoning src/obitools/align/_upperbond.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.c -building 'obitools.align._upperbond' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.o -msse2 -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c src/obitools/align/_upperbond.ext.1.c -o build/temp.linux-x86_64-cpython-312/src/obitools/align/_upperbond.ext.1.o -msse2 -src/obitools/align/_upperbond.ext.1.c: In function 'buildTable': -src/obitools/align/_upperbond.ext.1.c:96:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] - 96 | if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) - | ^ -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_upperbond.ext.1.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_upperbond.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/align/_assemble.pyx'] +cythoning src/obitools/align/_assemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.c +building 'obitools.align._assemble' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_assemble.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/align/_nwsdnabyprot.pyx'] +cythoning src/obitools/align/_nwsdnabyprot.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c +building 'obitools.align._nwsdnabyprot' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.o +build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c: In function '__pyx_f_8obitools_5align_13_nwsdnabyprot_12NWSDNAByProt_doAlignment': +build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c:4997:29: warning: '__pyx_v_smatrix' may be used uninitialized [-Wmaybe-uninitialized] + 4997 | __pyx_r = (__pyx_v_smatrix[__pyx_v_idx]).score; + | ^ +build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c:4016:67: note: '__pyx_v_smatrix' was declared here + 4016 | struct __pyx_t_8obitools_5align_13_nwsdnabyprot_CodonAlignCell *__pyx_v_smatrix; + | ^~~~~~~~~~~~~~~ +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nwsdnabyprot.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_freeendgapfm.pyx'] cythoning src/obitools/align/_freeendgapfm.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgapfm.c building 'obitools.align._freeendgapfm' extension @@ -1331,21 +1293,6 @@ building 'obitools.align._freeendgap' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgap.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgap.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgap.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_freeendgap.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/align/_profilenws.pyx'] -cythoning src/obitools/align/_profilenws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.c -building 'obitools.align._profilenws' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_profilenws.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/align/_qsrassemble.pyx'] -cythoning src/obitools/align/_qsrassemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.c -building 'obitools.align._qsrassemble' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsrassemble.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/align/_rassemble.pyx'] -cythoning src/obitools/align/_rassemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.c -building 'obitools.align._rassemble' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_rassemble.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_codonnws.pyx'] cythoning src/obitools/align/_codonnws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.c building 'obitools.align._codonnws' extension @@ -1358,25 +1305,35 @@ 26192 | int __pyx_v_p; | ^~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_codonnws.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/align/_nwsdnabyprot.pyx'] -cythoning src/obitools/align/_nwsdnabyprot.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c -building 'obitools.align._nwsdnabyprot' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.o -build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c: In function '__pyx_f_8obitools_5align_13_nwsdnabyprot_12NWSDNAByProt_doAlignment': -build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c:4997:29: warning: '__pyx_v_smatrix' may be used uninitialized [-Wmaybe-uninitialized] - 4997 | __pyx_r = (__pyx_v_smatrix[__pyx_v_idx]).score; - | ^ -build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c:4016:67: note: '__pyx_v_smatrix' was declared here - 4016 | struct __pyx_t_8obitools_5align_13_nwsdnabyprot_CodonAlignCell *__pyx_v_smatrix; - | ^~~~~~~~~~~~~~~ -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nwsdnabyprot.cpython-312-x86_64-linux-gnu.so -#####> ['src/obitools/tools/_solexapairend.pyx'] -cythoning src/obitools/tools/_solexapairend.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.c -creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools -building 'obitools.tools._solexapairend' extension -creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.o -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/_solexapairend.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/align/_profilenws.pyx'] +cythoning src/obitools/align/_profilenws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.c +building 'obitools.align._profilenws' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_profilenws.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] +cythoning src/obitools/align/_upperbond.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.c +building 'obitools.align._upperbond' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.o -msse2 +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c src/obitools/align/_upperbond.ext.1.c -o build/temp.linux-x86_64-cpython-312/src/obitools/align/_upperbond.ext.1.o -msse2 +src/obitools/align/_upperbond.ext.1.c: In function 'buildTable': +src/obitools/align/_upperbond.ext.1.c:96:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] + 96 | if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) + | ^ +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_upperbond.ext.1.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_upperbond.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/format/_format.pyx'] +cythoning src/obitools/format/_format.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.c +creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/format +building 'obitools.format._format' extension +creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/_format.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/format/genericparser/_genericparser.pyx'] +cythoning src/obitools/format/genericparser/_genericparser.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.c +creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser +building 'obitools.format.genericparser._genericparser' extension +creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/_genericparser.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/options/_options.pyx'] cythoning src/obitools/options/_options.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_options.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/options @@ -1389,6 +1346,41 @@ building 'obitools.options._bioseqfilter' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_bioseqfilter.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_bioseqfilter.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_bioseqfilter.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/_bioseqfilter.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/fastq/_fastq.pyx'] +cythoning src/obitools/fastq/_fastq.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.c +creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq +building 'obitools.fastq._fastq' extension +creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/_fastq.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/utils/_utils.pyx'] +cythoning src/obitools/utils/_utils.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c +creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils +building 'obitools.utils._utils' extension +creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.o +build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c: In function '__pyx_f_8obitools_5utils_6_utils_progressBar': +build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3864:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] + 3864 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); + | ~~^~ ~~~~~~~~~~~~~~~~ + | | | + | int long long unsigned int +build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3864:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] + 3864 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); + | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ + | | | + | int long long unsigned int +build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3905:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] + 3905 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); + | ~~^~ ~~~~~~~~~~~~~~~~ + | | | + | int long long unsigned int +build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3905:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] + 3905 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); + | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ + | | | + | int long long unsigned int +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/_utils.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/fasta/_fasta.pyx'] cythoning src/obitools/fasta/_fasta.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta/_fasta.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta @@ -1396,6 +1388,50 @@ creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta/_fasta.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta/_fasta.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta/_fasta.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta/_fasta.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/tools/_solexapairend.pyx'] +cythoning src/obitools/tools/_solexapairend.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.c +creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools +building 'obitools.tools._solexapairend' extension +creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.o +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/_solexapairend.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/word/_readindex.pyx'] +cythoning src/obitools/word/_readindex.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c +creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/word +building 'obitools.word._readindex' extension +creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/word -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.o -msse2 +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c: In function '__pyx_gb_8obitools_4word_10_readindex_9ReadIndex_14generator': +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:6589:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 6589 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { + | ^ +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c: In function '__pyx_gb_8obitools_4word_10_readindex_9ReadIndex_17generator1': +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:6787:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 6787 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { + | ^ +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c: In function '__pyx_pf_8obitools_4word_10_readindex_9ReadIndex_8load': +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5495:10: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 5495 | (void)(fread((&__pyx_v_ltbuffer), (sizeof(size_t)), 1, __pyx_v_f)); + | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5564:10: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 5564 | (void)(fread(__pyx_v_tcbuffer, 1, __pyx_v_ltbuffer, __pyx_v_f)); + | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5749:10: warning: pointer '__pyx_v_f' may be used after 'fclose' [-Wuse-after-free] + 5749 | (void)(fclose(__pyx_v_f)); + | ~^~~~~~~~~~~~~~~~~~ +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5616:10: note: call to 'fclose' here + 5616 | (void)(fclose(__pyx_v_f)); + | ~^~~~~~~~~~~~~~~~~~ +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_readindex.cpython-312-x86_64-linux-gnu.so +#####> ['src/obitools/word/_binary.pyx'] +cythoning src/obitools/word/_binary.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c +building 'obitools.word._binary' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.o +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c: In function '__pyx_f_8obitools_4word_7_binary_bin2str': +build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c:1841:33: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] + 1841 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { + | ^ +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_binary.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/profile/_profile.pyx'] cythoning src/obitools/profile/_profile.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/profile/_profile.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/profile @@ -1406,142 +1442,142 @@ running build_scripts creating build/scripts-3.12 creating build/raw_scripts -Store the raw script src/ecotaxstat.py -> build/raw_scripts/ecotaxstat.py -copying src/ecotaxstat.py -> build/raw_scripts -copying and adjusting src/ecotaxstat.py -> build/scripts-3.12 -Store the raw script src/illuminapairedend.py -> build/raw_scripts/illuminapairedend.py -copying src/illuminapairedend.py -> build/raw_scripts -copying and adjusting src/illuminapairedend.py -> build/scripts-3.12 +Store the raw script src/obihead.py -> build/raw_scripts/obihead.py +copying src/obihead.py -> build/raw_scripts +copying and adjusting src/obihead.py -> build/scripts-3.12 +Store the raw script src/obisplit.py -> build/raw_scripts/obisplit.py +copying src/obisplit.py -> build/raw_scripts +copying and adjusting src/obisplit.py -> build/scripts-3.12 +Store the raw script src/obiannotate.py -> build/raw_scripts/obiannotate.py +copying src/obiannotate.py -> build/raw_scripts +copying and adjusting src/obiannotate.py -> build/scripts-3.12 +Store the raw script src/obistat.py -> build/raw_scripts/obistat.py +copying src/obistat.py -> build/raw_scripts +copying and adjusting src/obistat.py -> build/scripts-3.12 Store the raw script src/obicut.py -> build/raw_scripts/obicut.py copying src/obicut.py -> build/raw_scripts copying and adjusting src/obicut.py -> build/scripts-3.12 -Store the raw script src/obicount.py -> build/raw_scripts/obicount.py -copying src/obicount.py -> build/raw_scripts -copying and adjusting src/obicount.py -> build/scripts-3.12 -Store the raw script src/obisample.py -> build/raw_scripts/obisample.py -copying src/obisample.py -> build/raw_scripts -copying and adjusting src/obisample.py -> build/scripts-3.12 -Store the raw script src/obisilva.py -> build/raw_scripts/obisilva.py -copying src/obisilva.py -> build/raw_scripts -copying and adjusting src/obisilva.py -> build/scripts-3.12 -Store the raw script src/obiextract.py -> build/raw_scripts/obiextract.py -copying src/obiextract.py -> build/raw_scripts -copying and adjusting src/obiextract.py -> build/scripts-3.12 +Store the raw script src/obidistribute.py -> build/raw_scripts/obidistribute.py +copying src/obidistribute.py -> build/raw_scripts +copying and adjusting src/obidistribute.py -> build/scripts-3.12 Store the raw script src/ecotag.py -> build/raw_scripts/ecotag.py copying src/ecotag.py -> build/raw_scripts copying and adjusting src/ecotag.py -> build/scripts-3.12 -Store the raw script src/ngsfilter.py -> build/raw_scripts/ngsfilter.py -copying src/ngsfilter.py -> build/raw_scripts -copying and adjusting src/ngsfilter.py -> build/scripts-3.12 -Store the raw script src/obiselect.py -> build/raw_scripts/obiselect.py -copying src/obiselect.py -> build/raw_scripts -copying and adjusting src/obiselect.py -> build/scripts-3.12 -Store the raw script src/obipr2.py -> build/raw_scripts/obipr2.py -copying src/obipr2.py -> build/raw_scripts -copying and adjusting src/obipr2.py -> build/scripts-3.12 +Store the raw script src/oligotag.py -> build/raw_scripts/oligotag.py +copying src/oligotag.py -> build/raw_scripts +copying and adjusting src/oligotag.py -> build/scripts-3.12 +Store the raw script src/extractreads.py -> build/raw_scripts/extractreads.py +copying src/extractreads.py -> build/raw_scripts +copying and adjusting src/extractreads.py -> build/scripts-3.12 +Store the raw script src/ecotaxstat.py -> build/raw_scripts/ecotaxstat.py +copying src/ecotaxstat.py -> build/raw_scripts +copying and adjusting src/ecotaxstat.py -> build/scripts-3.12 +Store the raw script src/extractreads2.py -> build/raw_scripts/extractreads2.py +copying src/extractreads2.py -> build/raw_scripts +copying and adjusting src/extractreads2.py -> build/scripts-3.12 +Store the raw script src/obisilva.py -> build/raw_scripts/obisilva.py +copying src/obisilva.py -> build/raw_scripts +copying and adjusting src/obisilva.py -> build/scripts-3.12 +Store the raw script src/obisample.py -> build/raw_scripts/obisample.py +copying src/obisample.py -> build/raw_scripts +copying and adjusting src/obisample.py -> build/scripts-3.12 Store the raw script src/obiaddtaxids.py -> build/raw_scripts/obiaddtaxids.py copying src/obiaddtaxids.py -> build/raw_scripts copying and adjusting src/obiaddtaxids.py -> build/scripts-3.12 -Store the raw script src/obitail.py -> build/raw_scripts/obitail.py -copying src/obitail.py -> build/raw_scripts -copying and adjusting src/obitail.py -> build/scripts-3.12 -Store the raw script src/ali2consensus.py -> build/raw_scripts/ali2consensus.py -copying src/ali2consensus.py -> build/raw_scripts -copying and adjusting src/ali2consensus.py -> build/scripts-3.12 -Store the raw script src/obitab.py -> build/raw_scripts/obitab.py -copying src/obitab.py -> build/raw_scripts -copying and adjusting src/obitab.py -> build/scripts-3.12 -Store the raw script src/obiuniq.py -> build/raw_scripts/obiuniq.py -copying src/obiuniq.py -> build/raw_scripts -copying and adjusting src/obiuniq.py -> build/scripts-3.12 -Store the raw script src/obiannotate.py -> build/raw_scripts/obiannotate.py -copying src/obiannotate.py -> build/raw_scripts -copying and adjusting src/obiannotate.py -> build/scripts-3.12 -Store the raw script src/obistat.py -> build/raw_scripts/obistat.py -copying src/obistat.py -> build/raw_scripts -copying and adjusting src/obistat.py -> build/scripts-3.12 +Store the raw script src/obiconvert.py -> build/raw_scripts/obiconvert.py +copying src/obiconvert.py -> build/raw_scripts +copying and adjusting src/obiconvert.py -> build/scripts-3.12 Store the raw script src/obigrep.py -> build/raw_scripts/obigrep.py copying src/obigrep.py -> build/raw_scripts copying and adjusting src/obigrep.py -> build/scripts-3.12 -Store the raw script src/ecotaxspecificity.py -> build/raw_scripts/ecotaxspecificity.py -copying src/ecotaxspecificity.py -> build/raw_scripts -copying and adjusting src/ecotaxspecificity.py -> build/scripts-3.12 -Store the raw script src/obisplit.py -> build/raw_scripts/obisplit.py -copying src/obisplit.py -> build/raw_scripts -copying and adjusting src/obisplit.py -> build/scripts-3.12 Store the raw script src/obisubset.py -> build/raw_scripts/obisubset.py copying src/obisubset.py -> build/raw_scripts copying and adjusting src/obisubset.py -> build/scripts-3.12 -Store the raw script src/obihead.py -> build/raw_scripts/obihead.py -copying src/obihead.py -> build/raw_scripts -copying and adjusting src/obihead.py -> build/scripts-3.12 +Store the raw script src/obicomplement.py -> build/raw_scripts/obicomplement.py +copying src/obicomplement.py -> build/raw_scripts +copying and adjusting src/obicomplement.py -> build/scripts-3.12 Store the raw script src/obisort.py -> build/raw_scripts/obisort.py copying src/obisort.py -> build/raw_scripts copying and adjusting src/obisort.py -> build/scripts-3.12 -Store the raw script src/extractreads2.py -> build/raw_scripts/extractreads2.py -copying src/extractreads2.py -> build/raw_scripts -copying and adjusting src/extractreads2.py -> build/scripts-3.12 +Store the raw script src/ecotaxspecificity.py -> build/raw_scripts/ecotaxspecificity.py +copying src/ecotaxspecificity.py -> build/raw_scripts +copying and adjusting src/ecotaxspecificity.py -> build/scripts-3.12 Store the raw script src/obijoinpairedend.py -> build/raw_scripts/obijoinpairedend.py copying src/obijoinpairedend.py -> build/raw_scripts copying and adjusting src/obijoinpairedend.py -> build/scripts-3.12 -Store the raw script src/obiconvert.py -> build/raw_scripts/obiconvert.py -copying src/obiconvert.py -> build/raw_scripts -copying and adjusting src/obiconvert.py -> build/scripts-3.12 -Store the raw script src/obidistribute.py -> build/raw_scripts/obidistribute.py -copying src/obidistribute.py -> build/raw_scripts -copying and adjusting src/obidistribute.py -> build/scripts-3.12 -Store the raw script src/obitaxonomy.py -> build/raw_scripts/obitaxonomy.py -copying src/obitaxonomy.py -> build/raw_scripts -copying and adjusting src/obitaxonomy.py -> build/scripts-3.12 +Store the raw script src/obiuniq.py -> build/raw_scripts/obiuniq.py +copying src/obiuniq.py -> build/raw_scripts +copying and adjusting src/obiuniq.py -> build/scripts-3.12 Store the raw script src/ecodbtaxstat.py -> build/raw_scripts/ecodbtaxstat.py copying src/ecodbtaxstat.py -> build/raw_scripts copying and adjusting src/ecodbtaxstat.py -> build/scripts-3.12 +Store the raw script src/obicount.py -> build/raw_scripts/obicount.py +copying src/obicount.py -> build/raw_scripts +copying and adjusting src/obicount.py -> build/scripts-3.12 Store the raw script src/obiclean.py -> build/raw_scripts/obiclean.py copying src/obiclean.py -> build/raw_scripts copying and adjusting src/obiclean.py -> build/scripts-3.12 -Store the raw script src/obicomplement.py -> build/raw_scripts/obicomplement.py -copying src/obicomplement.py -> build/raw_scripts -copying and adjusting src/obicomplement.py -> build/scripts-3.12 -Store the raw script src/extractreads.py -> build/raw_scripts/extractreads.py -copying src/extractreads.py -> build/raw_scripts -copying and adjusting src/extractreads.py -> build/scripts-3.12 -Store the raw script src/oligotag.py -> build/raw_scripts/oligotag.py -copying src/oligotag.py -> build/raw_scripts -copying and adjusting src/oligotag.py -> build/scripts-3.12 -changing mode of build/scripts-3.12/ecotaxstat from 644 to 755 -changing mode of build/scripts-3.12/illuminapairedend from 644 to 755 +Store the raw script src/illuminapairedend.py -> build/raw_scripts/illuminapairedend.py +copying src/illuminapairedend.py -> build/raw_scripts +copying and adjusting src/illuminapairedend.py -> build/scripts-3.12 +Store the raw script src/ngsfilter.py -> build/raw_scripts/ngsfilter.py +copying src/ngsfilter.py -> build/raw_scripts +copying and adjusting src/ngsfilter.py -> build/scripts-3.12 +Store the raw script src/obiselect.py -> build/raw_scripts/obiselect.py +copying src/obiselect.py -> build/raw_scripts +copying and adjusting src/obiselect.py -> build/scripts-3.12 +Store the raw script src/ali2consensus.py -> build/raw_scripts/ali2consensus.py +copying src/ali2consensus.py -> build/raw_scripts +copying and adjusting src/ali2consensus.py -> build/scripts-3.12 +Store the raw script src/obitail.py -> build/raw_scripts/obitail.py +copying src/obitail.py -> build/raw_scripts +copying and adjusting src/obitail.py -> build/scripts-3.12 +Store the raw script src/obitaxonomy.py -> build/raw_scripts/obitaxonomy.py +copying src/obitaxonomy.py -> build/raw_scripts +copying and adjusting src/obitaxonomy.py -> build/scripts-3.12 +Store the raw script src/obiextract.py -> build/raw_scripts/obiextract.py +copying src/obiextract.py -> build/raw_scripts +copying and adjusting src/obiextract.py -> build/scripts-3.12 +Store the raw script src/obitab.py -> build/raw_scripts/obitab.py +copying src/obitab.py -> build/raw_scripts +copying and adjusting src/obitab.py -> build/scripts-3.12 +Store the raw script src/obipr2.py -> build/raw_scripts/obipr2.py +copying src/obipr2.py -> build/raw_scripts +copying and adjusting src/obipr2.py -> build/scripts-3.12 +changing mode of build/scripts-3.12/obihead from 644 to 755 +changing mode of build/scripts-3.12/obisplit from 644 to 755 +changing mode of build/scripts-3.12/obiannotate from 644 to 755 +changing mode of build/scripts-3.12/obistat from 644 to 755 changing mode of build/scripts-3.12/obicut from 644 to 755 -changing mode of build/scripts-3.12/obicount from 644 to 755 -changing mode of build/scripts-3.12/obisample from 644 to 755 -changing mode of build/scripts-3.12/obisilva from 644 to 755 -changing mode of build/scripts-3.12/obiextract from 644 to 755 +changing mode of build/scripts-3.12/obidistribute from 644 to 755 changing mode of build/scripts-3.12/ecotag from 644 to 755 -changing mode of build/scripts-3.12/ngsfilter from 644 to 755 -changing mode of build/scripts-3.12/obiselect from 644 to 755 -changing mode of build/scripts-3.12/obipr2 from 644 to 755 +changing mode of build/scripts-3.12/oligotag from 644 to 755 +changing mode of build/scripts-3.12/extractreads from 644 to 755 +changing mode of build/scripts-3.12/ecotaxstat from 644 to 755 +changing mode of build/scripts-3.12/extractreads2 from 644 to 755 +changing mode of build/scripts-3.12/obisilva from 644 to 755 +changing mode of build/scripts-3.12/obisample from 644 to 755 changing mode of build/scripts-3.12/obiaddtaxids from 644 to 755 -changing mode of build/scripts-3.12/obitail from 644 to 755 -changing mode of build/scripts-3.12/ali2consensus from 644 to 755 -changing mode of build/scripts-3.12/obitab from 644 to 755 -changing mode of build/scripts-3.12/obiuniq from 644 to 755 -changing mode of build/scripts-3.12/obiannotate from 644 to 755 -changing mode of build/scripts-3.12/obistat from 644 to 755 +changing mode of build/scripts-3.12/obiconvert from 644 to 755 changing mode of build/scripts-3.12/obigrep from 644 to 755 -changing mode of build/scripts-3.12/ecotaxspecificity from 644 to 755 -changing mode of build/scripts-3.12/obisplit from 644 to 755 changing mode of build/scripts-3.12/obisubset from 644 to 755 -changing mode of build/scripts-3.12/obihead from 644 to 755 +changing mode of build/scripts-3.12/obicomplement from 644 to 755 changing mode of build/scripts-3.12/obisort from 644 to 755 -changing mode of build/scripts-3.12/extractreads2 from 644 to 755 +changing mode of build/scripts-3.12/ecotaxspecificity from 644 to 755 changing mode of build/scripts-3.12/obijoinpairedend from 644 to 755 -changing mode of build/scripts-3.12/obiconvert from 644 to 755 -changing mode of build/scripts-3.12/obidistribute from 644 to 755 -changing mode of build/scripts-3.12/obitaxonomy from 644 to 755 +changing mode of build/scripts-3.12/obiuniq from 644 to 755 changing mode of build/scripts-3.12/ecodbtaxstat from 644 to 755 +changing mode of build/scripts-3.12/obicount from 644 to 755 changing mode of build/scripts-3.12/obiclean from 644 to 755 -changing mode of build/scripts-3.12/obicomplement from 644 to 755 -changing mode of build/scripts-3.12/extractreads from 644 to 755 -changing mode of build/scripts-3.12/oligotag from 644 to 755 +changing mode of build/scripts-3.12/illuminapairedend from 644 to 755 +changing mode of build/scripts-3.12/ngsfilter from 644 to 755 +changing mode of build/scripts-3.12/obiselect from 644 to 755 +changing mode of build/scripts-3.12/ali2consensus from 644 to 755 +changing mode of build/scripts-3.12/obitail from 644 to 755 +changing mode of build/scripts-3.12/obitaxonomy from 644 to 755 +changing mode of build/scripts-3.12/obiextract from 644 to 755 +changing mode of build/scripts-3.12/obitab from 644 to 755 +changing mode of build/scripts-3.12/obipr2 from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build; python3.12 -m unittest discover -v /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__init__.py:192: SyntaxWarning: invalid escape sequence '\w' @@ -1616,33 +1652,33 @@ dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools ['src/obitools/_obitools.pyx'] -['src/obitools/format/_format.pyx'] -['src/obitools/format/genericparser/_genericparser.pyx'] -['src/obitools/utils/_utils.pyx'] -['src/obitools/fastq/_fastq.pyx'] -['src/obitools/word/_binary.pyx'] -@@@@> ['src/obitools/word/_readindex.h'] -['src/obitools/word/_readindex.pyx'] -['src/obitools/align/_assemble.pyx'] -@@@@> ['src/obitools/align/_lcs.h'] -['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_gprofilenws.pyx'] -['src/obitools/align/_qsassemble.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] -@@@@> ['src/obitools/align/_sse.h'] -['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] +['src/obitools/align/_rassemble.pyx'] +@@@@> ['src/obitools/align/_lcs.h'] +['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c'] +['src/obitools/align/_qsrassemble.pyx'] +['src/obitools/align/_qsassemble.pyx'] +['src/obitools/align/_assemble.pyx'] +['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_freeendgap.pyx'] -['src/obitools/align/_profilenws.pyx'] -['src/obitools/align/_qsrassemble.pyx'] -['src/obitools/align/_rassemble.pyx'] ['src/obitools/align/_codonnws.pyx'] -['src/obitools/align/_nwsdnabyprot.pyx'] -['src/obitools/tools/_solexapairend.pyx'] +['src/obitools/align/_profilenws.pyx'] +@@@@> ['src/obitools/align/_sse.h'] +['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] +['src/obitools/format/_format.pyx'] +['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] +['src/obitools/fastq/_fastq.pyx'] +['src/obitools/utils/_utils.pyx'] ['src/obitools/fasta/_fasta.pyx'] +['src/obitools/tools/_solexapairend.pyx'] +@@@@> ['src/obitools/word/_readindex.h'] +['src/obitools/word/_readindex.pyx'] +['src/obitools/word/_binary.pyx'] ['src/obitools/profile/_profile.pyx'] running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. @@ -1684,575 +1720,575 @@ running build_py running build_ext obitools._obitools src/obitools/_obitools.pyx ok -obitools.format._format src/obitools/format/_format.pyx ok -obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok -obitools.utils._utils src/obitools/utils/_utils.pyx ok -obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok -obitools.word._binary src/obitools/word/_binary.pyx ok -obitools.word._readindex src/obitools/word/_readindex.pyx ok -obitools.align._assemble src/obitools/align/_assemble.pyx ok +obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok +obitools.align._nws src/obitools/align/_nws.pyx ok +obitools.align._dynamic src/obitools/align/_dynamic.pyx ok +obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._lcs src/obitools/align/_lcs.pyx ok obitools.align._lcs src/obitools/align/_lcs.ext.3.c ok -obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok -obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok obitools.align._lcs src/obitools/align/_lcs.ext.4.c ok -obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok +obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok +obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok +obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok obitools.align._qsassemble src/obitools/align/_qsassemble.pyx ok -obitools.align._nws src/obitools/align/_nws.pyx ok -obitools.align._dynamic src/obitools/align/_dynamic.pyx ok -obitools.align._upperbond src/obitools/align/_upperbond.pyx ok -obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok +obitools.align._assemble src/obitools/align/_assemble.pyx ok +obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok obitools.align._freeendgapfm src/obitools/align/_freeendgapfm.pyx ok obitools.align._freeendgap src/obitools/align/_freeendgap.pyx ok -obitools.align._profilenws src/obitools/align/_profilenws.pyx ok -obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok -obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._codonnws src/obitools/align/_codonnws.pyx ok -obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok -obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok +obitools.align._profilenws src/obitools/align/_profilenws.pyx ok +obitools.align._upperbond src/obitools/align/_upperbond.pyx ok +obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok +obitools.format._format src/obitools/format/_format.pyx ok +obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok obitools.options._options src/obitools/options/_options.pyx ok obitools.options._bioseqfilter src/obitools/options/_bioseqfilter.pyx ok +obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok +obitools.utils._utils src/obitools/utils/_utils.pyx ok obitools.fasta._fasta src/obitools/fasta/_fasta.pyx ok +obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok +obitools.word._readindex src/obitools/word/_readindex.pyx ok +obitools.word._binary src/obitools/word/_binary.pyx ok obitools.profile._profile src/obitools/profile/_profile.pyx ok #####> ['src/obitools/_obitools.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/_obitools.c' Cython extension (up-to-date) -#####> ['src/obitools/format/_format.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.c' Cython extension (up-to-date) -#####> ['src/obitools/format/genericparser/_genericparser.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.c' Cython extension (up-to-date) -#####> ['src/obitools/utils/_utils.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c' Cython extension (up-to-date) -#####> ['src/obitools/fastq/_fastq.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.c' Cython extension (up-to-date) -#####> ['src/obitools/word/_binary.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c' Cython extension (up-to-date) -#####> ['src/obitools/word/_readindex.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c' Cython extension (up-to-date) -#####> ['src/obitools/align/_assemble.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.c' Cython extension (up-to-date) -#####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.4.c'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_lcs.c' Cython extension (up-to-date) #####> ['src/obitools/align/_gprofilenws.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.c' Cython extension (up-to-date) -#####> ['src/obitools/align/_qsassemble.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_nws.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_dynamic.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.c' Cython extension (up-to-date) -#####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.c' Cython extension (up-to-date) +#####> ['src/obitools/align/_rassemble.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.c' Cython extension (up-to-date) +#####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_lcs.c' Cython extension (up-to-date) +#####> ['src/obitools/align/_qsrassemble.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.c' Cython extension (up-to-date) +#####> ['src/obitools/align/_qsassemble.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.c' Cython extension (up-to-date) +#####> ['src/obitools/align/_assemble.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.c' Cython extension (up-to-date) +#####> ['src/obitools/align/_nwsdnabyprot.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c' Cython extension (up-to-date) #####> ['src/obitools/align/_freeendgapfm.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgapfm.c' Cython extension (up-to-date) #####> ['src/obitools/align/_freeendgap.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgap.c' Cython extension (up-to-date) -#####> ['src/obitools/align/_profilenws.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.c' Cython extension (up-to-date) -#####> ['src/obitools/align/_qsrassemble.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.c' Cython extension (up-to-date) -#####> ['src/obitools/align/_rassemble.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_codonnws.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.c' Cython extension (up-to-date) -#####> ['src/obitools/align/_nwsdnabyprot.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c' Cython extension (up-to-date) -#####> ['src/obitools/tools/_solexapairend.pyx'] -skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.c' Cython extension (up-to-date) +#####> ['src/obitools/align/_profilenws.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.c' Cython extension (up-to-date) +#####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.c' Cython extension (up-to-date) +#####> ['src/obitools/format/_format.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.c' Cython extension (up-to-date) +#####> ['src/obitools/format/genericparser/_genericparser.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.c' Cython extension (up-to-date) #####> ['src/obitools/options/_options.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_options.c' Cython extension (up-to-date) #####> ['src/obitools/options/_bioseqfilter.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_bioseqfilter.c' Cython extension (up-to-date) +#####> ['src/obitools/fastq/_fastq.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.c' Cython extension (up-to-date) +#####> ['src/obitools/utils/_utils.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c' Cython extension (up-to-date) #####> ['src/obitools/fasta/_fasta.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta/_fasta.c' Cython extension (up-to-date) +#####> ['src/obitools/tools/_solexapairend.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.c' Cython extension (up-to-date) +#####> ['src/obitools/word/_readindex.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c' Cython extension (up-to-date) +#####> ['src/obitools/word/_binary.pyx'] +skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c' Cython extension (up-to-date) #####> ['src/obitools/profile/_profile.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/profile/_profile.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/calcBc.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/drawBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/findErrors.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/writeBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/readFiles.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/annotation.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/sequence.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/taxonomy.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/options.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/annotation.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/collections.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fast.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/ecotag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/databases.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/rawdata.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/SVGdraw.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel/jobqueue.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/__pycache__ creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/dnahash/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/dnahash/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/dnahash/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/gzip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/version.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexaPairEnd.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/layout.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/unrooted.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/dot.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_freeendgap.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_codonnws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/ssearch.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_assemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/homopolymere.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_profilenws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_dynamic.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_lcs.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nwsdnabyprot.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_gprofilenws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsrassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_rassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_upperbond.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/__pycache__ creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/__pycache__/options.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__pycache__ creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/fastq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/fnaqual.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/embl.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/tagmatcher.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/fnaqual.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/embl.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/fastq.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/genbank.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/fnaqual.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/fastq.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/embl.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/fastq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/embl.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/genbank.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/tagmatcher.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology/go_obo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/fnaqual.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/_format.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/_genericparser.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__pycache__/bioseq.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__pycache__/iterator.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/bioseq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/crc64.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/iterator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/_utils.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/gzip.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/zipfile.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/SVGdraw.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/_genericparser.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/__pycache__/options.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology/go_obo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/_fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/feature.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__pycache__/feature.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/gzip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table/csv.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table/csv.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/decorator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/__pycache__ -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/SVGdraw.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__pycache__/quality.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/quality.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/zipfile.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sample.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/__pycache__ -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/predicate.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_binary.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_readindex.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nwsdnabyprot.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_dynamic.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_rassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_lcs.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/homopolymere.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_codonnws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_gprofilenws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsrassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/ssearch.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_assemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_upperbond.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_freeendgap.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_profilenws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics/noncentralhypergeo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics/hypergeometric.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics/noncentralhypergeo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fast.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/feature.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__pycache__/feature.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/_solexapairend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/solexapairend.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb/extern.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/collections.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/dnaparser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/ncbi.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/rootedtree.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/dag.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/tree.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/dag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/rootedtree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/component.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/compact.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/clique.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/__pycache__/component.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/component.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/compact.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/dag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/tree.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/rootedtree.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/dag.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/tree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/rootedtree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout/radialtree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment/ace.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/phylip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/observed.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/r.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/annotation.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/taxonomy.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/options.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/annotation.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/sequence.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexaPairEnd.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/ncbi.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/dnaparser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/_obitools.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/findErrors.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/calcBc.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/drawBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/readFiles.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/writeBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo/__pycache__ creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/_options.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/_bioseqfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/bioseqedittag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/bioseqcutter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/_bioseqfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/taxonomyfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/_options.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/bioseqfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/taxonomyfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/bioseqcutter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/gzip.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/SVGdraw.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/zipfile.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/version.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb/extern.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sample.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment/ace.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/quality.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__pycache__/quality.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/zipfile.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/_fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__pycache__/iterator.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__pycache__/bioseq.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/iterator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/crc64.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/bioseq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/_utils.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta/_fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile/_profile.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/_obitools.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/ecotag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/databases.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/rawdata.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/phylip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/r.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/observed.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/solexapairend.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/_solexapairend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_readindex.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_binary.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/predicate.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/decorator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel -creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/__pycache__ -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel/jobqueue.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel -copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/calcBc.py to calcBc.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/drawBcTree.py to drawBcTree.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/findErrors.py to findErrors.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/writeBcTree.py to writeBcTree.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/readFiles.py to readFiles.cpython-312.pyc +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto/__pycache__ +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/layout.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/unrooted.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/dot.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile/_profile.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile +creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile/__pycache__ +copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile/__pycache__ +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/options.py to options.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/annotation.py to annotation.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/sequence.py to sequence.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/taxonomy.py to taxonomy.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/collections.py to collections.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fast.py to fast.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/options.py to options.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/ecotag.py to ecotag.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/databases.py to databases.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/taxonomy.py to taxonomy.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/rawdata.py to rawdata.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/SVGdraw.py to SVGdraw.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/jobqueue.py to jobqueue.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/gzip.py to gzip.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/version.py to version.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexaPairEnd.py to solexaPairEnd.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/layout.py to layout.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/svg.py to svg.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/unrooted.py to unrooted.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/dot.py to dot.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/newick.py to newick.cpython-312.pyc -/usr/lib/python3.12/dist-packages/obitools/tree/newick.py:25: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.12/dist-packages/obitools/tree/newick.py:47: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.12/dist-packages/obitools/tree/newick.py:67: SyntaxWarning: invalid escape sequence '\[' +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/ssearch.py to ssearch.cpython-312.pyc +/usr/lib/python3.12/dist-packages/obitools/align/ssearch.py:9: SyntaxWarning: invalid escape sequence '\d' +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/homopolymere.py to homopolymere.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/parser.py to parser.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/options.py to options.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/fastq.py to fastq.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/fnaqual.py to fnaqual.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/embl.py to embl.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/genbank.py to genbank.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/tagmatcher.py to tagmatcher.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/go_obo.py to go_obo.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/fastq.py to fastq.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/fasta.py to fasta.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/genbank.py to genbank.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/fnaqual.py to fnaqual.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/bioseq.py to bioseq.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/crc64.py to crc64.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/iterator.py to iterator.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__init__.py to __init__.cpython-312.pyc -/usr/lib/python3.12/dist-packages/obitools/utils/__init__.py:192: SyntaxWarning: invalid escape sequence '\w' -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/parser.py to parser.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/go_obo.py to go_obo.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/parser.py to parser.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/tagmatcher/parser.py:11: SyntaxWarning: invalid escape sequence '\(' -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__init__.py to __init__.cpython-312.pyc +/usr/lib/python3.12/dist-packages/obitools/location/__init__.py:479: SyntaxWarning: invalid escape sequence '\.' +/usr/lib/python3.12/dist-packages/obitools/location/__init__.py:523: SyntaxWarning: invalid escape sequence '\.' +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/feature.py to feature.cpython-312.pyc +/usr/lib/python3.12/dist-packages/obitools/location/feature.py:67: SyntaxWarning: invalid escape sequence '\S' +/usr/lib/python3.12/dist-packages/obitools/location/feature.py:69: SyntaxWarning: invalid escape sequence '\s' +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/gzip.py to gzip.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table/csv.py to csv.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/table/csv.py:25: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/decorator.py to decorator.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/SVGdraw.py to SVGdraw.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/quality.py to quality.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/fasta.py to fasta.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__init__.py to __init__.cpython-312.pyc -/usr/lib/python3.12/dist-packages/obitools/fnaqual/__init__.py:2: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/zipfile.py to zipfile.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sample.py to sample.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/parser.py to parser.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/parser.py to parser.cpython-312.pyc -/usr/lib/python3.12/dist-packages/obitools/obo/parser.py:54: SyntaxWarning: invalid escape sequence '\ ' -/usr/lib/python3.12/dist-packages/obitools/obo/parser.py:102: SyntaxWarning: invalid escape sequence '\[' -/usr/lib/python3.12/dist-packages/obitools/obo/parser.py:230: SyntaxWarning: invalid escape sequence '\[' -/usr/lib/python3.12/dist-packages/obitools/obo/parser.py:520: SyntaxWarning: invalid escape sequence '\[' -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/options.py to options.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/predicate.py to predicate.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/homopolymere.py to homopolymere.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/ssearch.py to ssearch.cpython-312.pyc -/usr/lib/python3.12/dist-packages/obitools/align/ssearch.py:9: SyntaxWarning: invalid escape sequence '\d' -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/svg.py to svg.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/hypergeometric.py to hypergeometric.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/noncentralhypergeo.py to noncentralhypergeo.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fast.py to fast.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/feature.py to feature.cpython-312.pyc -/usr/lib/python3.12/dist-packages/obitools/location/feature.py:67: SyntaxWarning: invalid escape sequence '\S' -/usr/lib/python3.12/dist-packages/obitools/location/feature.py:69: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__init__.py to __init__.cpython-312.pyc -/usr/lib/python3.12/dist-packages/obitools/location/__init__.py:479: SyntaxWarning: invalid escape sequence '\.' -/usr/lib/python3.12/dist-packages/obitools/location/__init__.py:523: SyntaxWarning: invalid escape sequence '\.' -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/solexapairend.py to solexapairend.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/extern.py to extern.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/options.py to options.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/collections.py to collections.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/dnaparser.py to dnaparser.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/parser.py to parser.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/ncbi.py to ncbi.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/parser.py to parser.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/dag.py to dag.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/rootedtree.py to rootedtree.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/clique.py to clique.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/hypergeometric.py to hypergeometric.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/component.py to component.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/compact.py to compact.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/clique.py to clique.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/dag.py to dag.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/tree.py to tree.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/rootedtree.py to rootedtree.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout/radialtree.py to radialtree.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexaPairEnd.py to solexaPairEnd.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py to newick.cpython-312.pyc +/usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py:25: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py:47: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py:73: SyntaxWarning: invalid escape sequence '\[' +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/parser.py to parser.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/ncbi.py to ncbi.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/dnaparser.py to dnaparser.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/parser.py to parser.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/findErrors.py to findErrors.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/calcBc.py to calcBc.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/drawBcTree.py to drawBcTree.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/readFiles.py to readFiles.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/writeBcTree.py to writeBcTree.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/bioseqedittag.py to bioseqedittag.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/bioseqfilter.py to bioseqfilter.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/taxonomyfilter.py to taxonomyfilter.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/bioseqcutter.py to bioseqcutter.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/svg.py to svg.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/parser.py to parser.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/version.py to version.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/options.py to options.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/extern.py to extern.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sample.py to sample.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment/ace.py to ace.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/alignment/ace.py:11: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/obitools/alignment/ace.py:12: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/obitools/alignment/ace.py:14: SyntaxWarning: invalid escape sequence '\S' -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/phylip.py to phylip.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/observed.py to observed.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__init__.py to __init__.cpython-312.pyc +/usr/lib/python3.12/dist-packages/obitools/fnaqual/__init__.py:2: SyntaxWarning: invalid escape sequence '\s' +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/quality.py to quality.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/fasta.py to fasta.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/zipfile.py to zipfile.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/parser.py to parser.cpython-312.pyc +/usr/lib/python3.12/dist-packages/obitools/obo/parser.py:54: SyntaxWarning: invalid escape sequence '\ ' +/usr/lib/python3.12/dist-packages/obitools/obo/parser.py:102: SyntaxWarning: invalid escape sequence '\[' +/usr/lib/python3.12/dist-packages/obitools/obo/parser.py:230: SyntaxWarning: invalid escape sequence '\[' +/usr/lib/python3.12/dist-packages/obitools/obo/parser.py:520: SyntaxWarning: invalid escape sequence '\[' +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/parser.py to parser.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__init__.py to __init__.cpython-312.pyc +/usr/lib/python3.12/dist-packages/obitools/utils/__init__.py:192: SyntaxWarning: invalid escape sequence '\w' +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/iterator.py to iterator.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/crc64.py to crc64.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/bioseq.py to bioseq.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/phylip.py to phylip.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/r.py to r.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/options.py to options.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/annotation.py to annotation.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/sequence.py to sequence.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/taxonomy.py to taxonomy.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/parser.py to parser.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/bioseqedittag.py to bioseqedittag.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/bioseqcutter.py to bioseqcutter.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/taxonomyfilter.py to taxonomyfilter.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/bioseqfilter.py to bioseqfilter.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/options.py to options.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/ecotag.py to ecotag.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/databases.py to databases.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/rawdata.py to rawdata.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/taxonomy.py to taxonomy.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding/options.py to options.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/observed.py to observed.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/solexapairend.py to solexapairend.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/options.py to options.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/predicate.py to predicate.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/decorator.py to decorator.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py to newick.cpython-312.pyc -/usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py:25: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py:47: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py:73: SyntaxWarning: invalid escape sequence '\[' -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/jobqueue.py to jobqueue.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding/options.py to options.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/layout.py to layout.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/unrooted.py to unrooted.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/svg.py to svg.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/dot.py to dot.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/newick.py to newick.cpython-312.pyc +/usr/lib/python3.12/dist-packages/obitools/tree/newick.py:25: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.12/dist-packages/obitools/tree/newick.py:47: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.12/dist-packages/obitools/tree/newick.py:67: SyntaxWarning: invalid escape sequence '\[' +byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating src/OBITools.egg-info @@ -2270,73 +2306,73 @@ running install_scripts creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obicount -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obitaxonomy -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/ecotag -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obisubset -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/ecotaxstat -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obitab -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/illuminapairedend -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obiannotate -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/extractreads -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obiaddtaxids -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obisort -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obistat -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obisplit -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obidistribute -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/ecotaxstat -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obisample -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obiuniq -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obisilva -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/ali2consensus -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obiannotate -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obicut -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/ali2consensus -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/oligotag -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obijoinpairedend -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/ecotaxspecificity -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obihead -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obigrep -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/illuminapairedend -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obiconvert -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/ngsfilter -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obiclean -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obidistribute -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/ecotag -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/extractreads -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obisubset -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obicomplement -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obiaddtaxids -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obitail -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obiextract -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obiuniq -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/extractreads2 -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obisample -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/ecodbtaxstat -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obiselect -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obihead -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obipr2 -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/ecotaxspecificity -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obistat -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obisplit -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obigrep -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obiconvert -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin -copying build/scripts-3.12/obitail -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obijoinpairedend -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obitaxonomy -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/extractreads2 -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obisort -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obiselect -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin +copying build/scripts-3.12/obiclean -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicount to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitaxonomy to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotag to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisubset to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotaxstat to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitab to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/illuminapairedend to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiannotate to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/extractreads to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiaddtaxids to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisort to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obistat to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisplit to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obidistribute to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotaxstat to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisample to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiuniq to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisilva to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ali2consensus to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiannotate to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicut to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ali2consensus to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/oligotag to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obijoinpairedend to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotaxspecificity to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obihead to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obigrep to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/illuminapairedend to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiconvert to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ngsfilter to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiclean to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obidistribute to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotag to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/extractreads to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisubset to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicomplement to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiaddtaxids to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitail to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiextract to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiuniq to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/extractreads2 to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisample to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecodbtaxstat to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiselect to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obihead to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obipr2 to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotaxspecificity to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obistat to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisplit to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obigrep to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiconvert to 755 -changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitail to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obijoinpairedend to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitaxonomy to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/extractreads2 to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisort to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiselect to 755 +changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiclean to 755 make[1]: Leaving directory '/build/reproducible-path/obitools-1.2.13+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild @@ -2375,12 +2411,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1887157/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1887157/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2858336 and its subdirectories -I: Current time: Thu Nov 27 04:44:29 -12 2025 -I: pbuilder-time-stamp: 1764261869 +I: removing directory /srv/workspace/pbuilder/1887157 and its subdirectories +I: Current time: Sat Oct 26 00:31:21 +14 2024 +I: pbuilder-time-stamp: 1729852281