Diff of the two buildlogs: -- --- b1/build.log 2024-12-04 21:19:27.536043768 +0000 +++ b2/build.log 2024-12-04 21:22:43.603149590 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jan 6 15:40:31 -12 2026 -I: pbuilder-time-stamp: 1767757231 +I: Current time: Thu Dec 5 11:19:31 +14 2024 +I: pbuilder-time-stamp: 1733347171 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying no-incompatible-pointer-types.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2413180/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1286814/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 4 21:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1286814/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1286814/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='e3d3a7e51e8e4c57b8f665e72954d3b0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2413180' - PS1='# ' - PS2='> ' + INVOCATION_ID=6d758cb4a9aa48639c493fd4d132ce2d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1286814 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/pbuilderrc_kRLt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/b1 --logfile b1/build.log nim-hts_0.3.25+ds-2.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/pbuilderrc_u9Yr --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/b2 --logfile b2/build.log nim-hts_0.3.25+ds-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2413180/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1286814/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -216,7 +248,7 @@ Get: 92 http://deb.debian.org/debian unstable/main amd64 nim amd64 1.6.14-3 [4164 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.20-3 [653 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 tabix amd64 1.20+ds-2 [486 kB] -Fetched 43.5 MB in 1s (53.8 MB/s) +Fetched 43.5 MB in 3s (14.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) @@ -607,7 +639,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/nim-hts-0.3.25+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nim-hts_0.3.25+ds-2_source.changes +I: user script /srv/workspace/pbuilder/1286814/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1286814/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/nim-hts-0.3.25+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nim-hts_0.3.25+ds-2_source.changes dpkg-buildpackage: info: source package nim-hts dpkg-buildpackage: info: source version 0.3.25+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -751,14 +787,14 @@ CC: ../../../../usr/lib/nim/lib/system/formatfloat.nim CC: ../../../../usr/lib/nim/lib/system/dollars.nim CC: ../../../../usr/lib/nim/lib/system/io.nim -CC: ../../../../usr/lib/nim/lib/system.nim -CC: ../../../../usr/lib/nim/lib/std/exitprocs.nim -CC: ../../../../usr/lib/nim/lib/pure/parseutils.nim -CC: ../../../../usr/lib/nim/lib/pure/math.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem@sassertions.nim.c: In function 'sysFatal__systemZassertions_34': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem@sassertions.nim.c:330:1: warning: 'noreturn' function does return 330 | } | ^ +CC: ../../../../usr/lib/nim/lib/system.nim +CC: ../../../../usr/lib/nim/lib/std/exitprocs.nim +CC: ../../../../usr/lib/nim/lib/pure/parseutils.nim +CC: ../../../../usr/lib/nim/lib/pure/math.nim CC: ../../../../usr/lib/nim/lib/pure/algorithm.nim CC: ../../../../usr/lib/nim/lib/pure/unicode.nim CC: ../../../../usr/lib/nim/lib/pure/strutils.nim @@ -766,11 +802,11 @@ CC: ../../../../usr/lib/nim/lib/pure/times.nim CC: ../../../../usr/lib/nim/lib/pure/hashes.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sets.nim -CC: ../../../../usr/lib/nim/lib/pure/os.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem@sio.nim.c: In function 'raiseEIO__systemZio_96': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem@sio.nim.c:426:1: warning: 'noreturn' function does return 426 | } | ^ +CC: ../../../../usr/lib/nim/lib/pure/os.nim CC: ../../../../usr/lib/nim/lib/pure/strformat.nim CC: ../../../../usr/lib/nim/lib/pure/terminal.nim CC: ../../../../usr/lib/nim/lib/pure/unittest.nim @@ -782,8 +818,6 @@ CC: htstest.nim CC: ../src/hts/vcf.nim CC: ../src/hts/fai.nim -CC: ../src/hts/bgzf.nim -CC: ../src/hts/csi.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c: In function 'testEnded__pureZunittest_469': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:1016:66: warning: passing argument 2 of 'writeLine__pureZstreams_205' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1016 | writeLine__pureZstreams_205((*formatter).stream, TM__Um3CQPZ9bILAIolZOsxNIaw_29, 1); @@ -791,7 +825,6 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:276:123: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 276 | N_LIB_PRIVATE N_NIMCALL(void, writeLine__pureZstreams_205)(tyObject_StreamObj__GEE8eLXRbeO6QCtMQowoMg* s, NimStringDesc** args, NI argsLen_0); | ~~~~~~~~~~~~~~~~^~~~ -CC: ../src/hts/bgzf/bgzi.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:1179:58: warning: passing argument 2 of 'writeLine__pureZstreams_205' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1179 | writeLine__pureZstreams_205((*formatter).stream, TM__Um3CQPZ9bILAIolZOsxNIaw_39, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -805,15 +838,32 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:276:123: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 276 | N_LIB_PRIVATE N_NIMCALL(void, writeLine__pureZstreams_205)(tyObject_StreamObj__GEE8eLXRbeO6QCtMQowoMg* s, NimStringDesc** args, NI argsLen_0); | ~~~~~~~~~~~~~~~~^~~~ -CC: ../src/hts/stats.nim -CC: ../src/hts.nim -CC: bgzftest.nim -CC: faitest.nim -CC: auxtest.nim -CC: vcftest.nim -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c: In function 'set_fields__OOZsrcZhtsZbam_1045': -CC: bamtest.nim +CC: ../src/hts/bgzf.nim +CC: ../src/hts/csi.nim +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c: In function 'destroy_vcf__OOZsrcZhtsZvcf_312': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:901:71: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] + 901 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__YpitUkA2u56canbHw5ilBQ_8, 1); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:817:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' + 817 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { + | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c: In function 'atmhtstestdotnim_Init000': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c: In function 'close__OOZsrcZhtsZvcf_786': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:1663:51: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] + 1663 | T16_ = contains__stdZenumutils_44(TM__YpitUkA2u56canbHw5ilBQ_39, 2, (*v).fname); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:1614:71: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' + 1614 | static N_INLINE(NIM_BOOL, contains__stdZenumutils_44)(NimStringDesc** a, NI aLen_0, NimStringDesc* item) { + | ~~~~~~~~~~~~~~~~^ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:2270:104: warning: passing argument 2 of 'set_fields__OOZsrcZhtsZbam_1045' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] + 2270 | colonc1___htstest_215 = set_fields__OOZsrcZhtsZbam_1045(b__htstest_21, TM__jvcRnrtV7JVGTy2WY4Ac9bQ_61, 2); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:395:161: note: expected 'tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw *' {aka 'int *'} but argument is of type 'const tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw *' {aka 'const int *'} + 395 | N_LIB_PRIVATE N_NIMCALL(NI, set_fields__OOZsrcZhtsZbam_1045)(tyObject_BamcolonObjectType___10nvBEE8jyF9b8WnXewcLvg* b, tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw* fields, NI fieldsLen_0); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +CC: ../src/hts/bgzf/bgzi.nim +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c: In function 'set_fields__OOZsrcZhtsZbam_1045': +CC: ../src/hts/stats.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c:1587:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1587 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__fmsjfOMDZ7knDvhlaoEJsw_34, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -827,31 +877,7 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c:789:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 789 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:2270:104: warning: passing argument 2 of 'set_fields__OOZsrcZhtsZbam_1045' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] - 2270 | colonc1___htstest_215 = set_fields__OOZsrcZhtsZbam_1045(b__htstest_21, TM__jvcRnrtV7JVGTy2WY4Ac9bQ_61, 2); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:395:161: note: expected 'tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw *' {aka 'int *'} but argument is of type 'const tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw *' {aka 'const int *'} - 395 | N_LIB_PRIVATE N_NIMCALL(NI, set_fields__OOZsrcZhtsZbam_1045)(tyObject_BamcolonObjectType___10nvBEE8jyF9b8WnXewcLvg* b, tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw* fields, NI fieldsLen_0); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c: In function 'destroy_vcf__OOZsrcZhtsZvcf_312': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:901:71: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] - 901 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__YpitUkA2u56canbHw5ilBQ_8, 1); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:817:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' - 817 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { - | ~~~~~~~~~~~~~~~~^ -CC: statstests.nim -CC: vcfiso.nim -CC: ../src/hts/files.nim -CC: test_files.nim -CC: all.nim -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c: In function 'new_csi__OOZsrcZhtsZcsi_87': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c:608:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] - 608 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__tWGoZmdVu2LPIrNJYnsx1g_7, 1); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c:562:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' - 562 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { - | ~~~~~~~~~~~~~~~~^ +CC: ../src/hts.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c: In function 'close__OOZsrcZhtsZbgzfZbgzi_160': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c:634:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 634 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__qoWmRqjZwkhRpTDfcqFa9bQ_10, 1); @@ -865,20 +891,18 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c:586:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 586 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c: In function 'close__OOZsrcZhtsZvcf_786': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:1663:51: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] - 1663 | T16_ = contains__stdZenumutils_44(TM__YpitUkA2u56canbHw5ilBQ_39, 2, (*v).fname); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:1614:71: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' - 1614 | static N_INLINE(NIM_BOOL, contains__stdZenumutils_44)(NimStringDesc** a, NI aLen_0, NimStringDesc* item) { - | ~~~~~~~~~~~~~~~~^ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c: In function 'write_interval__OOZsrcZhtsZbgzfZbgzi_131': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c:1645:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] - 1645 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__9aWI9cEsc4bKIGHzHjCQ7r4w_127, 1); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c:1533:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' - 1533 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { +CC: bgzftest.nim +CC: faitest.nim +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c: In function 'new_csi__OOZsrcZhtsZcsi_87': +CC: auxtest.nim +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c:608:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] + 608 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__tWGoZmdVu2LPIrNJYnsx1g_7, 1); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c:562:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' + 562 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ +CC: vcftest.nim +CC: bamtest.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3152': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4305:1: warning: 'noreturn' function does return 4305 | } @@ -891,6 +915,7 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4597:1: warning: 'noreturn' function does return 4597 | } | ^ +CC: statstests.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3403': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4818:1: warning: 'noreturn' function does return 4818 | } @@ -899,6 +924,29 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:6274:1: warning: 'noreturn' function does return 6274 | } | ^ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3318': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:6724:1: warning: 'noreturn' function does return + 6724 | } + | ^ +CC: vcfiso.nim +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3254': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:7759:1: warning: 'noreturn' function does return + 7759 | } + | ^ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3193': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:7789:1: warning: 'noreturn' function does return + 7789 | } + | ^ +CC: ../src/hts/files.nim +CC: test_files.nim +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c: In function 'write_interval__OOZsrcZhtsZbgzfZbgzi_131': +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c:1645:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] + 1645 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__9aWI9cEsc4bKIGHzHjCQ7r4w_127, 1); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c:1533:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' + 1533 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { + | ~~~~~~~~~~~~~~~~^ +CC: all.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c: In function 'atmvcfisodotnim_Init000': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:1836:99: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1836 | T57_ = contains__stdZenumutils_44(TM__sA80JslFRt9aI2gci0rbANg_22, 2, ((NimStringDesc*) &TM__sA80JslFRt9aI2gci0rbANg_25)); @@ -906,10 +954,6 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:909:71: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 909 | static N_INLINE(NIM_BOOL, contains__stdZenumutils_44)(NimStringDesc** a, NI aLen_0, NimStringDesc* item) { | ~~~~~~~~~~~~~~~~^ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3318': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:6724:1: warning: 'noreturn' function does return - 6724 | } - | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:2351:149: warning: passing argument 2 of 'nsuSplitCharSet' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 2351 | T210_ = nsuSplitCharSet(((NimStringDesc*) &TM__sA80JslFRt9aI2gci0rbANg_25), TM__sA80JslFRt9aI2gci0rbANg_59, ((NI) 1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -928,14 +972,6 @@ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:1443:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 1443 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3254': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:7759:1: warning: 'noreturn' function does return - 7759 | } - | ^ -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3193': -/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:7789:1: warning: 'noreturn' function does return - 7789 | } - | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c: In function 'write_linked_blocks__vcftest_4811': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6155:59: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 6155 | T14_ = contains__stdZenumutils_44(TM__9b1mIhyjPa0b9anS9ar5V6sPA_848, 2, ((NimStringDesc*) &TM__9b1mIhyjPa0b9anS9ar5V6sPA_850)); @@ -988,7 +1024,7 @@ | ~~~~~~~~~~~~~~~~^ Hint: [Link] Hint: gc: refc; opt: none (DEBUG BUILD, `-d:release` generates faster code) -84531 lines; 11.016s; 145.695MiB peakmem; proj: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all.nim; out: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all [SuccessX] +84531 lines; 13.790s; 145.371MiB peakmem; proj: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all.nim; out: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all [SuccessX] tests/all [Suite] flag test-suite @@ -1062,7 +1098,7 @@ [OK] re-use same header issue 77 [Suite] speed tests -312078 in .. 9.435998106000001 seconds +312078 in .. 11.873343172 seconds [OK] standard format getter [Suite] vcf indexing suite @@ -1110,31 +1146,31 @@ install -p -m0644 debian/copyright debian/nim-hts-dev/usr/share/doc/nim-hts-dev/copyright install -p -m0644 debian/copyright debian/nim-hts-examples/usr/share/doc/nim-hts-examples/copyright dh_installchangelogs - install -m0755 -d debian/nim-hts-examples/usr/share/doc/nim-hts-examples - install -p -m0644 debian/.debhelper/generated/nim-hts-examples/dh_installchangelogs.dch.trimmed debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog.Debian - install -p -m0644 ./CHANGES.md debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog install -m0755 -d debian/nim-hts-dev/usr/share/doc/nim-hts-dev install -p -m0644 debian/.debhelper/generated/nim-hts-dev/dh_installchangelogs.dch.trimmed debian/nim-hts-dev/usr/share/doc/nim-hts-dev/changelog.Debian install -p -m0644 ./CHANGES.md debian/nim-hts-dev/usr/share/doc/nim-hts-dev/changelog + install -m0755 -d debian/nim-hts-examples/usr/share/doc/nim-hts-examples + install -p -m0644 debian/.debhelper/generated/nim-hts-examples/dh_installchangelogs.dch.trimmed debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog.Debian + install -p -m0644 ./CHANGES.md debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog dh_perl dh_link dh_strip_nondeterminism dh_compress - cd debian/nim-hts-examples cd debian/nim-hts-dev + cd debian/nim-hts-examples chmod a-x usr/share/doc/nim-hts-dev/changelog usr/share/doc/nim-hts-dev/changelog.Debian chmod a-x usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim - gzip -9nf usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim gzip -9nf usr/share/doc/nim-hts-dev/changelog usr/share/doc/nim-hts-dev/changelog.Debian cd '/build/reproducible-path/nim-hts-0.3.25+ds' + gzip -9nf usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim cd '/build/reproducible-path/nim-hts-0.3.25+ds' dh_fixperms - find debian/nim-hts-examples ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nim-hts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/nim-hts-examples ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nim-hts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-examples/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-examples/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/nim-hts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nim-hts-examples/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/nim-hts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nim-hts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-examples -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing @@ -1150,20 +1186,20 @@ echo misc:Depends= >> debian/nim-hts-examples.substvars echo misc:Pre-Depends= >> debian/nim-hts-examples.substvars dpkg-gencontrol -pnim-hts-examples -ldebian/changelog -Tdebian/nim-hts-examples.substvars -cdebian/control -Pdebian/nim-hts-examples - chmod 0644 -- debian/nim-hts-dev/DEBIAN/control chmod 0644 -- debian/nim-hts-examples/DEBIAN/control + chmod 0644 -- debian/nim-hts-dev/DEBIAN/control dh_md5sums install -m0755 -d debian/nim-hts-dev/DEBIAN + cd debian/nim-hts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/nim-hts-examples/DEBIAN cd debian/nim-hts-examples >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/nim-hts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/nim-hts-examples/DEBIAN/md5sums chmod 0644 -- debian/nim-hts-dev/DEBIAN/md5sums + chmod 0644 -- debian/nim-hts-examples/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/nim-hts-dev .. dpkg-deb --root-owner-group --build debian/nim-hts-examples .. -dpkg-deb: building package 'nim-hts-examples' in '../nim-hts-examples_0.3.25+ds-2_all.deb'. + dpkg-deb --root-owner-group --build debian/nim-hts-dev .. dpkg-deb: building package 'nim-hts-dev' in '../nim-hts-dev_0.3.25+ds-2_all.deb'. +dpkg-deb: building package 'nim-hts-examples' in '../nim-hts-examples_0.3.25+ds-2_all.deb'. dpkg-genbuildinfo --build=binary -O../nim-hts_0.3.25+ds-2_amd64.buildinfo dpkg-genchanges --build=binary -O../nim-hts_0.3.25+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1171,12 +1207,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1286814/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1286814/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2413180 and its subdirectories -I: Current time: Tue Jan 6 15:42:26 -12 2026 -I: pbuilder-time-stamp: 1767757346 +I: removing directory /srv/workspace/pbuilder/1286814 and its subdirectories +I: Current time: Thu Dec 5 11:22:42 +14 2024 +I: pbuilder-time-stamp: 1733347362