Diff of the two buildlogs:

--
--- b1/build.log	2024-11-14 07:27:51.964951376 +0000
+++ b2/build.log	2024-11-14 07:31:58.276169299 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Wed Nov 13 19:25:14 -12 2024
-I: pbuilder-time-stamp: 1731569114
+I: Current time: Thu Dec 18 03:50:54 +14 2025
+I: pbuilder-time-stamp: 1765979454
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -29,51 +29,83 @@
 dpkg-source: info: applying fix-circular-import.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/1873671/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/3430164/tmp/hooks/D01_modify_environment starting
+debug: Running on infom02-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Dec 17 13:51 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/3430164/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/3430164/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.2.32(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
   DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='amd64'
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='9874de840db343979d0aeef748361cec'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='1873671'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=deb824c2919e483f94ccb8587fbb1952
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=3430164
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R4UFKVFz/pbuilderrc_WdK4 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R4UFKVFz/b1 --logfile b1/build.log mirtop_0.4.28-1.dsc'
-  SUDO_GID='109'
-  SUDO_UID='104'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R4UFKVFz/pbuilderrc_NVQb --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R4UFKVFz/b2 --logfile b2/build.log mirtop_0.4.28-1.dsc'
+  SUDO_GID=109
+  SUDO_UID=104
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
 I: uname -a
-  Linux infom01-amd64 6.1.0-27-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Aug  4 21:30 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/1873671/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Aug  4  2024 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/3430164/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -299,7 +331,7 @@
 Get: 168 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 7.4.7-4 [588 kB]
 Get: 169 http://deb.debian.org/debian unstable/main amd64 python3-recommonmark all 0.7.1+ds-5 [17.3 kB]
 Get: 170 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-7 [16.4 kB]
-Fetched 103 MB in 4s (24.7 MB/s)
+Fetched 103 MB in 2s (47.0 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package libpython3.12-minimal:amd64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19969 files and directories currently installed.)
@@ -864,8 +896,8 @@
 Setting up tzdata (2024b-3) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Thu Nov 14 07:26:19 UTC 2024.
-Universal Time is now:  Thu Nov 14 07:26:19 UTC 2024.
+Local time is now:      Wed Dec 17 13:52:52 UTC 2025.
+Universal Time is now:  Wed Dec 17 13:52:52 UTC 2025.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up libpython3.13-minimal:amd64 (3.13.0-2) ...
@@ -1027,7 +1059,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/mirtop-0.4.28/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../mirtop_0.4.28-1_source.changes
+I: user script /srv/workspace/pbuilder/3430164/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/3430164/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/mirtop-0.4.28/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../mirtop_0.4.28-1_source.changes
 dpkg-buildpackage: info: source package mirtop
 dpkg-buildpackage: info: source version 0.4.28-1
 dpkg-buildpackage: info: source distribution unstable
@@ -1094,66 +1130,66 @@
 running build_py
 creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
 copying mirtop/command_line.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
-copying mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
 copying mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
 copying mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
+copying mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
 creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql
 copying mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql
 copying mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql
-creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
-copying mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
-copying mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
-copying mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
-copying mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
-copying mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
 creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
 copying mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
 copying mirtop/gff/query.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
 copying mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
 copying mirtop/gff/convert.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
 copying mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
+copying mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
+copying mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
+copying mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
+copying mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
+copying mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
+copying mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
+copying mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
+copying mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
 creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
 copying mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
 copying mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
 copying mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
 copying mirtop/libs/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
 copying mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
-copying mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
-copying mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
-copying mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
+copying mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
 creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
 copying mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
 copying mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
 copying mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
 running egg_info
 creating mirtop.egg-info
 writing mirtop.egg-info/PKG-INFO
@@ -1172,66 +1208,66 @@
 running build_py
 creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
 copying mirtop/command_line.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
-copying mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
 copying mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
 copying mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
+copying mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
 creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql
 copying mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql
 copying mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql
-creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
-copying mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
-copying mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
-copying mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
-copying mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
-copying mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
 creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
 copying mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
 copying mirtop/gff/query.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
 copying mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
 copying mirtop/gff/convert.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
 copying mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
+copying mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
+copying mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
+copying mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
+copying mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
+copying mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
+copying mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
+copying mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
+copying mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
 creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
 copying mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
 copying mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
 copying mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
 copying mirtop/libs/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
 copying mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
-copying mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
-copying mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
-copying mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
+copying mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
 creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
 copying mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
 copying mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
 copying mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
 running egg_info
 writing mirtop.egg-info/PKG-INFO
 writing dependency_links to mirtop.egg-info/dependency_links.txt
@@ -1417,118 +1453,118 @@
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/command_line.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
 creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/query.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/convert.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
 creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
 creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql/sql.py to sql.cpython-313.pyc
 /usr/lib/python3.13/dist-packages/mirtop/sql/sql.py:478: SyntaxWarning: invalid escape sequence '\('
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql/__init__.py to __init__.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/command_line.py to command_line.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/version.py to version.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/manatee.py to manatee.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/seqbuster.py to seqbuster.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/srnabench.py to srnabench.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/optimir.py to optimir.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/isomirsea.py to isomirsea.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/prost.py to prost.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/seqbuster.py to seqbuster.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/fasta.py to fasta.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/isomirs.py to isomirs.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/vcf.py to vcf.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/check.py to check.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/validator.py to validator.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/classgff.py to classgff.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/gff_versions.py to gff_versions.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/header.py to header.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/compare.py to compare.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/update.py to update.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/body.py to body.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/validator.py to validator.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/query.py to query.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/gff_versions.py to gff_versions.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/merge.py to merge.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/stats.py to stats.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/classgff.py to classgff.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/check.py to check.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/body.py to body.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/convert.py to convert.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/merge.py to merge.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/header.py to header.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/read.py to read.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/update.py to update.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/install.py to install.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/filter.py to filter.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/bam.py to bam.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/vcf.py to vcf.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/isomirs.py to isomirs.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/seqbuster.py to seqbuster.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/fasta.py to fasta.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/isomirsea.py to isomirsea.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/srnabench.py to srnabench.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/prost.py to prost.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/optimir.py to optimir.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/manatee.py to manatee.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/seqbuster.py to seqbuster.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/utils.py to utils.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/parse.py to parse.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/config.py to config.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/sql.py to sql.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/parse.py to parse.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/spikeins.py to spikeins.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/fastq.py to fastq.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/do.py to do.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/simulator.py to simulator.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/utils.py to utils.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/logger.py to logger.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/do.py to do.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/fastq.py to fastq.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/read.py to read.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/filter.py to filter.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/bam.py to bam.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/mintplates.py to mintplates.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/annotate.py to annotate.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/fasta.py to fasta.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/logger.py to logger.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/simulator.py to simulator.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/realign.py to realign.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/keys.py to keys.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/__init__.py to __init__.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/mapper.py to mapper.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/keys.py to keys.cpython-313.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/snps.py to snps.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/install.py to install.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/annotate.py to annotate.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/fasta.py to fasta.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/mintplates.py to mintplates.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/version.py to version.cpython-313.pyc
 running install_egg_info
 Copying mirtop.egg-info to /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop-0.4.28.egg-info
 Skipping SOURCES.txt
@@ -1570,118 +1606,118 @@
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/command_line.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
 creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/query.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/convert.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
 creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
 creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
 copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql/sql.py to sql.cpython-312.pyc
 /usr/lib/python3.12/dist-packages/mirtop/sql/sql.py:478: SyntaxWarning: invalid escape sequence '\('
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql/__init__.py to __init__.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/command_line.py to command_line.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/version.py to version.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/manatee.py to manatee.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/seqbuster.py to seqbuster.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/srnabench.py to srnabench.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/optimir.py to optimir.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/isomirsea.py to isomirsea.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/prost.py to prost.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/seqbuster.py to seqbuster.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/fasta.py to fasta.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/isomirs.py to isomirs.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/vcf.py to vcf.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/check.py to check.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/validator.py to validator.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/classgff.py to classgff.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/gff_versions.py to gff_versions.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/header.py to header.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/compare.py to compare.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/update.py to update.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/body.py to body.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/validator.py to validator.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/query.py to query.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/gff_versions.py to gff_versions.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/merge.py to merge.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/stats.py to stats.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/classgff.py to classgff.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/check.py to check.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/body.py to body.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/convert.py to convert.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/merge.py to merge.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/header.py to header.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/read.py to read.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/update.py to update.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/install.py to install.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/filter.py to filter.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/bam.py to bam.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/vcf.py to vcf.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/isomirs.py to isomirs.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/seqbuster.py to seqbuster.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/fasta.py to fasta.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/isomirsea.py to isomirsea.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/srnabench.py to srnabench.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/prost.py to prost.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/optimir.py to optimir.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/manatee.py to manatee.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/seqbuster.py to seqbuster.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/utils.py to utils.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/parse.py to parse.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/config.py to config.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/sql.py to sql.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/parse.py to parse.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/spikeins.py to spikeins.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/fastq.py to fastq.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/do.py to do.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/simulator.py to simulator.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/utils.py to utils.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/logger.py to logger.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/do.py to do.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/fastq.py to fastq.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/read.py to read.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/filter.py to filter.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/bam.py to bam.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/mintplates.py to mintplates.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/annotate.py to annotate.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/fasta.py to fasta.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/logger.py to logger.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/simulator.py to simulator.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/realign.py to realign.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/keys.py to keys.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/__init__.py to __init__.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/mapper.py to mapper.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/keys.py to keys.cpython-312.pyc
 byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/snps.py to snps.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/install.py to install.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/annotate.py to annotate.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/fasta.py to fasta.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/mintplates.py to mintplates.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/version.py to version.cpython-312.pyc
 running install_egg_info
 Copying mirtop.egg-info to /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop-0.4.28.egg-info
 Skipping SOURCES.txt
@@ -1742,8 +1778,8 @@
    dh_compress -O--buildsystem=pybuild
 	cd debian/python3-mirtop
 	cd debian/mirtop
-	chmod a-x usr/share/doc/python3-mirtop/changelog usr/share/doc/python3-mirtop/changelog.Debian
 	chmod a-x usr/share/doc/mirtop/changelog usr/share/doc/mirtop/changelog.Debian usr/share/man/man1/mirtop.1
+	chmod a-x usr/share/doc/python3-mirtop/changelog usr/share/doc/python3-mirtop/changelog.Debian
 	gzip -9nf usr/share/doc/mirtop/changelog usr/share/doc/mirtop/changelog.Debian usr/share/man/man1/mirtop.1
 	gzip -9nf usr/share/doc/python3-mirtop/changelog usr/share/doc/python3-mirtop/changelog.Debian
 	cd '/build/reproducible-path/mirtop-0.4.28'
@@ -1753,12 +1789,12 @@
 	find debian/mirtop ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
 	find debian/mirtop/usr/share/doc -type f -a -true -a ! -regex 'debian/mirtop/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
 	find debian/python3-mirtop/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-mirtop/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
-	find debian/python3-mirtop/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
 	find debian/mirtop/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
-	find debian/python3-mirtop -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+	find debian/python3-mirtop/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
 	find debian/mirtop/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
-	find debian/python3-mirtop/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
+	find debian/python3-mirtop -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
 	find debian/mirtop -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+	find debian/python3-mirtop/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
 	find debian/mirtop/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
    dh_missing -O--buildsystem=pybuild
    dh_installdeb -O--buildsystem=pybuild
@@ -1771,29 +1807,29 @@
 	chmod 0755 -- debian/python3-mirtop/DEBIAN/prerm
 	install -m0755 -d debian/mirtop/DEBIAN
    dh_gencontrol -O--buildsystem=pybuild
-	install -m0755 -d debian/mirtop/DEBIAN
-	echo misc:Depends= >> debian/mirtop.substvars
-	echo misc:Pre-Depends= >> debian/mirtop.substvars
-	dpkg-gencontrol -pmirtop -ldebian/changelog -Tdebian/mirtop.substvars -cdebian/control -Pdebian/mirtop
 	install -m0755 -d debian/python3-mirtop/DEBIAN
 	echo misc:Depends= >> debian/python3-mirtop.substvars
 	echo misc:Pre-Depends= >> debian/python3-mirtop.substvars
 	dpkg-gencontrol -ppython3-mirtop -ldebian/changelog -Tdebian/python3-mirtop.substvars -cdebian/control -Pdebian/python3-mirtop
-	chmod 0644 -- debian/mirtop/DEBIAN/control
+	install -m0755 -d debian/mirtop/DEBIAN
+	echo misc:Depends= >> debian/mirtop.substvars
+	echo misc:Pre-Depends= >> debian/mirtop.substvars
+	dpkg-gencontrol -pmirtop -ldebian/changelog -Tdebian/mirtop.substvars -cdebian/control -Pdebian/mirtop
 dpkg-gencontrol: warning: Depends field of package python3-mirtop: substitution variable ${sphinxdoc:Depends} used, but is not defined
 	chmod 0644 -- debian/python3-mirtop/DEBIAN/control
+	chmod 0644 -- debian/mirtop/DEBIAN/control
    dh_md5sums -O--buildsystem=pybuild
 	install -m0755 -d debian/mirtop/DEBIAN
 	install -m0755 -d debian/python3-mirtop/DEBIAN
-	cd debian/mirtop >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
 	cd debian/python3-mirtop >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
+	cd debian/mirtop >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
 	chmod 0644 -- debian/mirtop/DEBIAN/md5sums
 	chmod 0644 -- debian/python3-mirtop/DEBIAN/md5sums
    dh_builddeb -O--buildsystem=pybuild
 	dpkg-deb --root-owner-group --build debian/python3-mirtop ..
 	dpkg-deb --root-owner-group --build debian/mirtop ..
-dpkg-deb: building package 'python3-mirtop' in '../python3-mirtop_0.4.28-1_all.deb'.
 dpkg-deb: building package 'mirtop' in '../mirtop_0.4.28-1_all.deb'.
+dpkg-deb: building package 'python3-mirtop' in '../python3-mirtop_0.4.28-1_all.deb'.
  dpkg-genbuildinfo --build=binary -O../mirtop_0.4.28-1_amd64.buildinfo
  dpkg-genchanges --build=binary -O../mirtop_0.4.28-1_amd64.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
@@ -1802,12 +1838,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/3430164/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/3430164/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/1873671 and its subdirectories
-I: Current time: Wed Nov 13 19:27:51 -12 2024
-I: pbuilder-time-stamp: 1731569271
+I: removing directory /srv/workspace/pbuilder/3430164 and its subdirectories
+I: Current time: Thu Dec 18 03:54:57 +14 2025
+I: pbuilder-time-stamp: 1765979697