Diff of the two buildlogs: -- --- b1/build.log 2025-10-28 08:11:53.010693763 +0000 +++ b2/build.log 2025-10-28 08:19:55.407277680 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Nov 30 02:20:55 -12 2026 -I: pbuilder-time-stamp: 1796048455 +I: Current time: Tue Oct 28 22:11:55 +14 2025 +I: pbuilder-time-stamp: 1761639115 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -32,53 +32,85 @@ dpkg-source: info: applying openmm_version_skip.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3464875/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2697903/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 28 08:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2697903/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2697903/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='5b7c8af9704f440ea790b73f320db0e7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3464875' - PS1='# ' - PS2='> ' + INVOCATION_ID=46aa6579abb4426c83c1ad94ae5fa2e8 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2697903 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LheJeCiB/pbuilderrc_FJOI --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LheJeCiB/b1 --logfile b1/build.log mdtraj_1.11.0-2.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LheJeCiB/pbuilderrc_u5tJ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LheJeCiB/b2 --logfile b2/build.log mdtraj_1.11.0-2.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3464875/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2697903/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -484,7 +516,7 @@ Get: 308 http://deb.debian.org/debian unstable/main amd64 python3-tables-lib amd64 3.10.2-3 [503 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 python3-tables all 3.10.2-3 [354 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 python3-versioneer all 0.29-1 [43.0 kB] -Fetched 232 MB in 3s (90.2 MB/s) +Fetched 232 MB in 4s (53.0 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -1482,8 +1514,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Nov 30 14:22:00 UTC 2026. -Universal Time is now: Mon Nov 30 14:22:00 UTC 2026. +Local time is now: Tue Oct 28 08:13:10 UTC 2025. +Universal Time is now: Tue Oct 28 08:13:10 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... @@ -1769,7 +1801,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mdtraj-1.11.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mdtraj_1.11.0-2_source.changes +I: user script /srv/workspace/pbuilder/2697903/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2697903/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mdtraj-1.11.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mdtraj_1.11.0-2_source.changes dpkg-buildpackage: info: source package mdtraj dpkg-buildpackage: info: source version 1.11.0-2 dpkg-buildpackage: info: source distribution unstable @@ -1888,107 +1924,107 @@ running build running build_py creating build/lib.linux-x86_64-cpython-313/mdtraj -copying mdtraj/io.py -> build/lib.linux-x86_64-cpython-313/mdtraj -copying mdtraj/_version.py -> build/lib.linux-x86_64-cpython-313/mdtraj copying mdtraj/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj -creating build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/lammpstrj.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/hoomdxml.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/openmmxml.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/mol2.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/psf.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/gsd.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/arc.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/registry.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/xyzfile.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/amberrst.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/prmtop.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/netcdf.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/gro.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/lh5.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/mdcrd.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -copying mdtraj/formats/hdf5.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats -creating build/lib.linux-x86_64-cpython-313/mdtraj/utils -copying mdtraj/utils/unitcell.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils -copying mdtraj/utils/rotation.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils -copying mdtraj/utils/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils -copying mdtraj/utils/delay_import.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils -copying mdtraj/utils/singleton.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils -copying mdtraj/utils/zipped.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils -copying mdtraj/utils/validation.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils -copying mdtraj/utils/contextmanagers.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils -creating build/lib.linux-x86_64-cpython-313/mdtraj/nmr -copying mdtraj/nmr/scalar_couplings.py -> build/lib.linux-x86_64-cpython-313/mdtraj/nmr -copying mdtraj/nmr/shift_wrappers.py -> build/lib.linux-x86_64-cpython-313/mdtraj/nmr -copying mdtraj/nmr/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/nmr +copying mdtraj/_version.py -> build/lib.linux-x86_64-cpython-313/mdtraj +copying mdtraj/io.py -> build/lib.linux-x86_64-cpython-313/mdtraj +creating build/lib.linux-x86_64-cpython-313/mdtraj/core +copying mdtraj/core/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core +copying mdtraj/core/trajectory.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core +copying mdtraj/core/topology.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core +copying mdtraj/core/selection.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core +copying mdtraj/core/element.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core +copying mdtraj/core/residue_names.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core creating build/lib.linux-x86_64-cpython-313/mdtraj/geometry -copying mdtraj/geometry/contact.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry -copying mdtraj/geometry/rdf.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry +copying mdtraj/geometry/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry +copying mdtraj/geometry/hbond.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry +copying mdtraj/geometry/pi_stacking.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry +copying mdtraj/geometry/order.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry copying mdtraj/geometry/thermodynamic_properties.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry +copying mdtraj/geometry/dssp.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry copying mdtraj/geometry/shape.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry -copying mdtraj/geometry/pi_stacking.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry -copying mdtraj/geometry/hbond.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry +copying mdtraj/geometry/distance.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry +copying mdtraj/geometry/rg.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry copying mdtraj/geometry/dihedral.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry -copying mdtraj/geometry/dssp.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry -copying mdtraj/geometry/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry -copying mdtraj/geometry/sasa.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry copying mdtraj/geometry/internal.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry -copying mdtraj/geometry/rg.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry +copying mdtraj/geometry/sasa.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry copying mdtraj/geometry/angle.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry +copying mdtraj/geometry/rdf.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry +copying mdtraj/geometry/contact.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry copying mdtraj/geometry/alignment.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry -copying mdtraj/geometry/distance.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry -copying mdtraj/geometry/order.py -> build/lib.linux-x86_64-cpython-313/mdtraj/geometry -creating build/lib.linux-x86_64-cpython-313/mdtraj/core -copying mdtraj/core/element.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core -copying mdtraj/core/trajectory.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core -copying mdtraj/core/topology.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core -copying mdtraj/core/residue_names.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core -copying mdtraj/core/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core -copying mdtraj/core/selection.py -> build/lib.linux-x86_64-cpython-313/mdtraj/core creating build/lib.linux-x86_64-cpython-313/mdtraj/scripts -copying mdtraj/scripts/mdinspect.py -> build/lib.linux-x86_64-cpython-313/mdtraj/scripts copying mdtraj/scripts/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/scripts copying mdtraj/scripts/mdconvert.py -> build/lib.linux-x86_64-cpython-313/mdtraj/scripts +copying mdtraj/scripts/mdinspect.py -> build/lib.linux-x86_64-cpython-313/mdtraj/scripts +creating build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/netcdf.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/registry.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/lh5.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/openmmxml.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/psf.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/arc.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/lammpstrj.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/hdf5.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/prmtop.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/xyzfile.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/mol2.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/gro.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/hoomdxml.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/mdcrd.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/amberrst.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats +copying mdtraj/formats/gsd.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats creating build/lib.linux-x86_64-cpython-313/mdtraj/reporters -copying mdtraj/reporters/netcdfreporter.py -> build/lib.linux-x86_64-cpython-313/mdtraj/reporters -copying mdtraj/reporters/dcdreporter.py -> build/lib.linux-x86_64-cpython-313/mdtraj/reporters copying mdtraj/reporters/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/reporters -copying mdtraj/reporters/basereporter.py -> build/lib.linux-x86_64-cpython-313/mdtraj/reporters copying mdtraj/reporters/xtcreporter.py -> build/lib.linux-x86_64-cpython-313/mdtraj/reporters +copying mdtraj/reporters/dcdreporter.py -> build/lib.linux-x86_64-cpython-313/mdtraj/reporters +copying mdtraj/reporters/netcdfreporter.py -> build/lib.linux-x86_64-cpython-313/mdtraj/reporters +copying mdtraj/reporters/basereporter.py -> build/lib.linux-x86_64-cpython-313/mdtraj/reporters copying mdtraj/reporters/hdf5reporter.py -> build/lib.linux-x86_64-cpython-313/mdtraj/reporters +creating build/lib.linux-x86_64-cpython-313/mdtraj/nmr +copying mdtraj/nmr/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/nmr +copying mdtraj/nmr/scalar_couplings.py -> build/lib.linux-x86_64-cpython-313/mdtraj/nmr +copying mdtraj/nmr/shift_wrappers.py -> build/lib.linux-x86_64-cpython-313/mdtraj/nmr +creating build/lib.linux-x86_64-cpython-313/mdtraj/utils +copying mdtraj/utils/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils +copying mdtraj/utils/delay_import.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils +copying mdtraj/utils/singleton.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils +copying mdtraj/utils/validation.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils +copying mdtraj/utils/zipped.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils +copying mdtraj/utils/unitcell.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils +copying mdtraj/utils/contextmanagers.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils +copying mdtraj/utils/rotation.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils creating build/lib.linux-x86_64-cpython-313/mdtraj/testing -copying mdtraj/testing/docstrings.py -> build/lib.linux-x86_64-cpython-313/mdtraj/testing +copying mdtraj/testing/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/testing copying mdtraj/testing/docscrape.py -> build/lib.linux-x86_64-cpython-313/mdtraj/testing copying mdtraj/testing/testing.py -> build/lib.linux-x86_64-cpython-313/mdtraj/testing -copying mdtraj/testing/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/testing +copying mdtraj/testing/docstrings.py -> build/lib.linux-x86_64-cpython-313/mdtraj/testing creating build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx -copying mdtraj/formats/pdbx/pdbxfile.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx -copying mdtraj/formats/pdbx/PdbxReader.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx -copying mdtraj/formats/pdbx/pdbx.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/PdbxContainers.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx +copying mdtraj/formats/pdbx/PdbxReader.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx +copying mdtraj/formats/pdbx/pdbxfile.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx +copying mdtraj/formats/pdbx/pdbx.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx creating build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb -copying mdtraj/formats/pdb/pdbstructure.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb copying mdtraj/formats/pdb/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb copying mdtraj/formats/pdb/pdbfile.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb +copying mdtraj/formats/pdb/pdbstructure.py -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb creating build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit -copying mdtraj/utils/unit/basedimension.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit -copying mdtraj/utils/unit/unit_math.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit -copying mdtraj/utils/unit/mymatrix.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit -copying mdtraj/utils/unit/unit_definitions.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit -copying mdtraj/utils/unit/prefix.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit -copying mdtraj/utils/unit/baseunit.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit -copying mdtraj/utils/unit/unit.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit copying mdtraj/utils/unit/__init__.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit +copying mdtraj/utils/unit/unit.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit copying mdtraj/utils/unit/constants.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit +copying mdtraj/utils/unit/doctests.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit copying mdtraj/utils/unit/unit_operators.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit copying mdtraj/utils/unit/quantity.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit -copying mdtraj/utils/unit/doctests.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit copying mdtraj/utils/unit/standard_dimensions.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit +copying mdtraj/utils/unit/basedimension.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit +copying mdtraj/utils/unit/mymatrix.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit +copying mdtraj/utils/unit/unit_definitions.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit +copying mdtraj/utils/unit/unit_math.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit +copying mdtraj/utils/unit/prefix.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit +copying mdtraj/utils/unit/baseunit.py -> build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit creating build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/data -copying mdtraj/formats/pdb/data/residues.xml -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/pdbNames.xml -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/data +copying mdtraj/formats/pdb/data/residues.xml -> build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/data UPDATING build/lib.linux-x86_64-cpython-313/mdtraj/_version.py set build/lib.linux-x86_64-cpython-313/mdtraj/_version.py to '1.11.0' running build_ext @@ -2153,121 +2189,121 @@ running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/mdtraj -copying build/lib.linux-x86_64-cpython-313/mdtraj/io.py -> build/bdist.linux-x86_64/wheel/./mdtraj +copying build/lib.linux-x86_64-cpython-313/mdtraj/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj +creating build/bdist.linux-x86_64/wheel/mdtraj/core +copying build/lib.linux-x86_64-cpython-313/mdtraj/core/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core +copying build/lib.linux-x86_64-cpython-313/mdtraj/core/trajectory.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core +copying build/lib.linux-x86_64-cpython-313/mdtraj/core/topology.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core +creating build/bdist.linux-x86_64/wheel/mdtraj/core/lib +copying build/lib.linux-x86_64-cpython-313/mdtraj/core/lib/center.h -> build/bdist.linux-x86_64/wheel/./mdtraj/core/lib +copying build/lib.linux-x86_64-cpython-313/mdtraj/core/lib/theobald_rmsd.h -> build/bdist.linux-x86_64/wheel/./mdtraj/core/lib +copying build/lib.linux-x86_64-cpython-313/mdtraj/core/lib/libtheobald.a -> build/bdist.linux-x86_64/wheel/./mdtraj/core/lib +copying build/lib.linux-x86_64-cpython-313/mdtraj/core/selection.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core +copying build/lib.linux-x86_64-cpython-313/mdtraj/core/element.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core +copying build/lib.linux-x86_64-cpython-313/mdtraj/core/residue_names.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core +creating build/bdist.linux-x86_64/wheel/mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/drid.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/neighborlist.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/hbond.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/pi_stacking.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/order.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/thermodynamic_properties.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/dssp.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/shape.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/distance.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/rg.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/dihedral.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/internal.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/sasa.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/angle.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/rdf.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/contact.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/alignment.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry +creating build/bdist.linux-x86_64/wheel/mdtraj/scripts +copying build/lib.linux-x86_64-cpython-313/mdtraj/scripts/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/scripts +copying build/lib.linux-x86_64-cpython-313/mdtraj/scripts/mdconvert.py -> build/bdist.linux-x86_64/wheel/./mdtraj/scripts +copying build/lib.linux-x86_64-cpython-313/mdtraj/scripts/mdinspect.py -> build/bdist.linux-x86_64/wheel/./mdtraj/scripts creating build/bdist.linux-x86_64/wheel/mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/netcdf.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/registry.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/lh5.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/openmmxml.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/psf.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/arc.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/lammpstrj.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/hdf5.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats creating build/bdist.linux-x86_64/wheel/mdtraj/formats/pdbx -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx/pdbxfile.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx/PdbxReader.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx/pdbx.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx/PdbxContainers.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/hoomdxml.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/openmmxml.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/mol2.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/psf.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/gsd.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/arc.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/registry.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/xyzfile.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/amberrst.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx/PdbxReader.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx/pdbxfile.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdbx/pdbx.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdbx copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/prmtop.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/netcdf.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/gro.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/lh5.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/xyzfile.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/mol2.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats creating build/bdist.linux-x86_64/wheel/mdtraj/formats/pdb -creating build/bdist.linux-x86_64/wheel/mdtraj/formats/pdb/data -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/data/residues.xml -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb/data -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/data/pdbNames.xml -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb/data -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/pdbstructure.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/pdbfile.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/pdbstructure.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb +creating build/bdist.linux-x86_64/wheel/mdtraj/formats/pdb/data +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/data/pdbNames.xml -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb/data +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/pdb/data/residues.xml -> build/bdist.linux-x86_64/wheel/./mdtraj/formats/pdb/data +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/gro.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/hoomdxml.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/mdcrd.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/formats -copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/hdf5.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/amberrst.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/formats/gsd.py -> build/bdist.linux-x86_64/wheel/./mdtraj/formats +copying build/lib.linux-x86_64-cpython-313/mdtraj/_version.py -> build/bdist.linux-x86_64/wheel/./mdtraj +copying build/lib.linux-x86_64-cpython-313/mdtraj/io.py -> build/bdist.linux-x86_64/wheel/./mdtraj +copying build/lib.linux-x86_64-cpython-313/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj +creating build/bdist.linux-x86_64/wheel/mdtraj/reporters +copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters +copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/xtcreporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters +copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/dcdreporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters +copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/netcdfreporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters +copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/basereporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters +copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/hdf5reporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters +creating build/bdist.linux-x86_64/wheel/mdtraj/nmr +copying build/lib.linux-x86_64-cpython-313/mdtraj/nmr/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/nmr +copying build/lib.linux-x86_64-cpython-313/mdtraj/nmr/scalar_couplings.py -> build/bdist.linux-x86_64/wheel/./mdtraj/nmr +copying build/lib.linux-x86_64-cpython-313/mdtraj/nmr/shift_wrappers.py -> build/bdist.linux-x86_64/wheel/./mdtraj/nmr creating build/bdist.linux-x86_64/wheel/mdtraj/utils -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unitcell.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/rotation.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/delay_import.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils creating build/bdist.linux-x86_64/wheel/mdtraj/utils/unit -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/basedimension.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/unit_math.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/mymatrix.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/unit_definitions.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/prefix.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/baseunit.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/unit.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/unit.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/constants.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/doctests.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/unit_operators.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/quantity.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/doctests.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/standard_dimensions.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/delay_import.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/basedimension.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/mymatrix.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/unit_definitions.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/unit_math.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/prefix.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unit/baseunit.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils/unit copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/singleton.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils -copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/zipped.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/validation.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/zipped.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/unitcell.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/contextmanagers.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils -creating build/bdist.linux-x86_64/wheel/mdtraj/nmr -copying build/lib.linux-x86_64-cpython-313/mdtraj/nmr/scalar_couplings.py -> build/bdist.linux-x86_64/wheel/./mdtraj/nmr -copying build/lib.linux-x86_64-cpython-313/mdtraj/nmr/shift_wrappers.py -> build/bdist.linux-x86_64/wheel/./mdtraj/nmr -copying build/lib.linux-x86_64-cpython-313/mdtraj/nmr/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/nmr -creating build/bdist.linux-x86_64/wheel/mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/contact.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/rdf.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/thermodynamic_properties.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/shape.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/pi_stacking.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/drid.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/hbond.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/dihedral.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/dssp.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/neighborlist.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/sasa.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/internal.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/rg.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/angle.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/alignment.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/distance.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -copying build/lib.linux-x86_64-cpython-313/mdtraj/geometry/order.py -> build/bdist.linux-x86_64/wheel/./mdtraj/geometry -creating build/bdist.linux-x86_64/wheel/mdtraj/core -copying build/lib.linux-x86_64-cpython-313/mdtraj/core/element.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core -copying build/lib.linux-x86_64-cpython-313/mdtraj/core/trajectory.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core -copying build/lib.linux-x86_64-cpython-313/mdtraj/core/topology.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core -copying build/lib.linux-x86_64-cpython-313/mdtraj/core/residue_names.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core -copying build/lib.linux-x86_64-cpython-313/mdtraj/core/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core -creating build/bdist.linux-x86_64/wheel/mdtraj/core/lib -copying build/lib.linux-x86_64-cpython-313/mdtraj/core/lib/libtheobald.a -> build/bdist.linux-x86_64/wheel/./mdtraj/core/lib -copying build/lib.linux-x86_64-cpython-313/mdtraj/core/lib/theobald_rmsd.h -> build/bdist.linux-x86_64/wheel/./mdtraj/core/lib -copying build/lib.linux-x86_64-cpython-313/mdtraj/core/lib/center.h -> build/bdist.linux-x86_64/wheel/./mdtraj/core/lib -copying build/lib.linux-x86_64-cpython-313/mdtraj/core/selection.py -> build/bdist.linux-x86_64/wheel/./mdtraj/core -creating build/bdist.linux-x86_64/wheel/mdtraj/scripts -copying build/lib.linux-x86_64-cpython-313/mdtraj/scripts/mdinspect.py -> build/bdist.linux-x86_64/wheel/./mdtraj/scripts -copying build/lib.linux-x86_64-cpython-313/mdtraj/scripts/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/scripts -copying build/lib.linux-x86_64-cpython-313/mdtraj/scripts/mdconvert.py -> build/bdist.linux-x86_64/wheel/./mdtraj/scripts -creating build/bdist.linux-x86_64/wheel/mdtraj/reporters -copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/netcdfreporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters -copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/dcdreporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters -copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters -copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/basereporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters -copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/xtcreporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters -copying build/lib.linux-x86_64-cpython-313/mdtraj/reporters/hdf5reporter.py -> build/bdist.linux-x86_64/wheel/./mdtraj/reporters -copying build/lib.linux-x86_64-cpython-313/mdtraj/_version.py -> build/bdist.linux-x86_64/wheel/./mdtraj +copying build/lib.linux-x86_64-cpython-313/mdtraj/utils/rotation.py -> build/bdist.linux-x86_64/wheel/./mdtraj/utils creating build/bdist.linux-x86_64/wheel/mdtraj/testing -copying build/lib.linux-x86_64-cpython-313/mdtraj/testing/docstrings.py -> build/bdist.linux-x86_64/wheel/./mdtraj/testing +copying build/lib.linux-x86_64-cpython-313/mdtraj/testing/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/testing copying build/lib.linux-x86_64-cpython-313/mdtraj/testing/docscrape.py -> build/bdist.linux-x86_64/wheel/./mdtraj/testing copying build/lib.linux-x86_64-cpython-313/mdtraj/testing/testing.py -> build/bdist.linux-x86_64/wheel/./mdtraj/testing -copying build/lib.linux-x86_64-cpython-313/mdtraj/testing/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj/testing +copying build/lib.linux-x86_64-cpython-313/mdtraj/testing/docstrings.py -> build/bdist.linux-x86_64/wheel/./mdtraj/testing copying build/lib.linux-x86_64-cpython-313/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj -copying build/lib.linux-x86_64-cpython-313/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mdtraj -copying build/lib.linux-x86_64-cpython-313/mdtraj/__init__.py -> build/bdist.linux-x86_64/wheel/./mdtraj running install_egg_info running egg_info creating mdtraj.egg-info @@ -2321,7 +2357,7 @@ Copying mdtraj.egg-info to build/bdist.linux-x86_64/wheel/./mdtraj-1.11.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/mdtraj-1.11.0.dist-info/WHEEL -creating '/build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/.tmp-7ro8ajzz/mdtraj-1.11.0-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/.tmp-fal6zpln/mdtraj-1.11.0-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'mdtraj/__init__.py' adding 'mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so' adding 'mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so' @@ -3694,7 +3730,7 @@ XFAIL tests/test_trajectory.py::test_unitcell[lammpstrj] - lammpstrj seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[ncrst] - ncrst seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[rst7] - rst7 seems to need unit vectors -= 975 passed, 103 skipped, 22 deselected, 61 xfailed, 1 warning in 491.45s (0:08:11) = += 975 passed, 103 skipped, 22 deselected, 61 xfailed, 1 warning in 163.71s (0:02:43) = lugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness @@ -3713,7 +3749,7 @@ dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) - rm -fr -- /tmp/dh-xdg-rundir-yv1butzP + rm -fr -- /tmp/dh-xdg-rundir-jeyeWKCv create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -4013,9 +4049,9 @@ preparing documents... done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/mdtraj-1.11.0/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/mdtraj-1.11.0/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/mdtraj-1.11.0/build/html/_static/basic.css +Writing evaluated template result to /build/reproducible-path/mdtraj-1.11.0/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/mdtraj-1.11.0/build/html/_static/js/versions.js copying static files: done copying extra files... @@ -4240,29 +4276,29 @@ debian/rules override_dh_sphinxdoc-indep make[1]: Entering directory '/build/reproducible-path/mdtraj-1.11.0' dh_sphinxdoc -i - ln -sf ../../../../../sphinx_rtd_theme/static/css/badge_only.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css - ln -sf ../../../../../sphinx_rtd_theme/static/css/theme.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css ln -sf ../../../../../sphinx_rtd_theme/static/js/theme.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/js/theme.js - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.ttf - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.svg + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.ttf ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.ttf + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.ttf - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.woff2 - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff2 - ln -sf ../../../../javascript/jquery/jquery.min.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/jquery.js + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/css/badge_only.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css + ln -sf ../../../../../sphinx_rtd_theme/static/css/theme.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js + ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/searchtools.js + ln -sf ../../../../javascript/jquery/jquery.min.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/jquery.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/language_data.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/doctools.js - ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/searchtools.js rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/.buildinfo mv debian/python-mdtraj-doc.substvars.new debian/python-mdtraj-doc.substvars mv debian/python-mdtraj-doc.substvars.new debian/python-mdtraj-doc.substvars @@ -4276,10 +4312,10 @@ dh_sphinxdoc -O--buildsystem=pybuild -Npython-mdtraj-doc dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -O--buildsystem=pybuild - install -m0755 -d debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc - install -p -m0644 debian/.debhelper/generated/python-mdtraj-doc/dh_installchangelogs.dch.trimmed debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/changelog.Debian install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj install -p -m0644 debian/.debhelper/generated/python3-mdtraj/dh_installchangelogs.dch.trimmed debian/python3-mdtraj/usr/share/doc/python3-mdtraj/changelog.Debian + install -m0755 -d debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc + install -p -m0644 debian/.debhelper/generated/python-mdtraj-doc/dh_installchangelogs.dch.trimmed debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/changelog.Debian dh_installexamples -O--buildsystem=pybuild dh_installexamples: warning: Cannot auto-detect main package for python-mdtraj-doc. If the default is wrong, please use --doc-main-package or the X-Doc-Main-Package field install -m0755 -d debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/examples @@ -4309,10 +4345,10 @@ install -p -m0644 ./debian/mdinspect.1 debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 - mv debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 - chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 mv debian/python3-mdtraj/usr/share/man/man1/mdinspect.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 + mv debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 + chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] @@ -4325,8 +4361,8 @@ D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:179: Writing INSTALLER in debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.0.dist-info D: dh_python3 fs:190: Deleting RECORD in debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.0.dist-info -I: dh_python3 tools:114: replacing shebang in debian/python3-mdtraj/usr/bin/mdinspect I: dh_python3 tools:114: replacing shebang in debian/python3-mdtraj/usr/bin/mdconvert-mdtraj +I: dh_python3 tools:114: replacing shebang in debian/python3-mdtraj/usr/bin/mdinspect D: dh_python3 fs:338: package python3-mdtraj details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.0.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-mdtraj D: dh_python3 pydist:175: trying to find dependency for numpy<3,>=1.25.0 (python=None) @@ -4341,7 +4377,7 @@ D: dh_python3 pydist:175: trying to find dependency for packaging (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3-numpy (>= 2.0.0~)', 'python3:any', 'python3-packaging', 'python3-pyparsing', 'python3 (>= 3.13~)', 'python3 (<< 3.14)', 'python3-scipy'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3:any', 'python3 (<< 3.14)', 'python3 (>= 3.13~)', 'python3-packaging', 'python3-scipy', 'python3-pyparsing', 'python3-numpy (>= 2.0.0~)'}; R=[]; S=[]; E=[], B=[]; RT=[] rm -f debian/python-mdtraj-doc.debhelper.log debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/mdtraj-1.11.0' @@ -4351,69 +4387,69 @@ # So clean up manually (assume the binary difference is not an issue) rm -f debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib/libtheobald.a for d in debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib; do if [-d $d]; then rmdir -p --ignore-fail-on-non-empty $d; fi; done -/bin/sh: 1: [-d: not found +/bin/sh: line 1: [-d: command not found make[1]: Leaving directory '/build/reproducible-path/mdtraj-1.11.0' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css + ln -s ../../../../../sphinx_rtd_theme/static/css/theme.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css + ln -s ../../../../../sphinx_rtd_theme/static/css/badge_only.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 + ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot + ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff2 ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff2 - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff - ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf - ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.woff2 ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.woff2 - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 - ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 + ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.ttf ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.ttf + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf + ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.woff2 ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.woff2 + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff + ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.ttf ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.ttf - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.svg - ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.svg - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 - ln -s ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 - ln -s ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 - ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf - ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot - ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.ttf ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.ttf + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 + ln -s ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 + ln -s ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf + ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.svg + ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.svg rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/js/theme.js ln -s ../../../../../sphinx_rtd_theme/static/js/theme.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/js/theme.js - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css - ln -s ../../../../../sphinx_rtd_theme/static/css/theme.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css - ln -s ../../../../../sphinx_rtd_theme/static/css/badge_only.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/doctools.js - ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/doctools.js - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js - ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/searchtools.js + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js + ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/doctools.js + ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/doctools.js rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/language_data.js rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/jquery.js ln -s ../../../../javascript/jquery/jquery.min.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/jquery.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1761565261 as canonical time - Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/file.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/mdtraj_logo-small.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/mdtraj_logo-small.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-mdtraj cd debian/python-mdtraj-doc chmod a-x usr/share/doc/python3-mdtraj/changelog.Debian usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 - gzip -9nf usr/share/doc/python3-mdtraj/changelog.Debian usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 chmod a-x usr/share/doc/python-mdtraj-doc/changelog.Debian usr/share/doc/python-mdtraj-doc/html/_static/example-trajectoryview-data.json usr/share/doc/python-mdtraj-doc/html/_static/mdtraj_logo.xcf + gzip -9nf usr/share/doc/python3-mdtraj/changelog.Debian usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 gzip -9nf usr/share/doc/python-mdtraj-doc/changelog.Debian usr/share/doc/python-mdtraj-doc/html/_static/example-trajectoryview-data.json usr/share/doc/python-mdtraj-doc/html/_static/mdtraj_logo.xcf cd '/build/reproducible-path/mdtraj-1.11.0' cd '/build/reproducible-path/mdtraj-1.11.0' @@ -4436,41 +4472,16 @@ objcopy --compress-debug-sections debian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-mdtraj.debug chmod 0644 -- debian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-mdtraj.debug dh_strip -a -O--buildsystem=pybuild - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65 - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65/8f5767837a54f068adb1ea41d054fe7757eb65.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65/8f5767837a54f068adb1ea41d054fe7757eb65.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65/8f5767837a54f068adb1ea41d054fe7757eb65.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/bc/672ff6e9ee7f3854b1e0d16c104fe83221f42d.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/bc/672ff6e9ee7f3854b1e0d16c104fe83221f42d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/bc/672ff6e9ee7f3854b1e0d16c104fe83221f42d.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/3e - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/3e/62b9c4b856611efc929b97143c3ee327b84405.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/3e/62b9c4b856611efc929b97143c3ee327b84405.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/3e/62b9c4b856611efc929b97143c3ee327b84405.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7e - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7e/5c4d8b08caf07e912a0f924a8eeea86fe83574.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7e/5c4d8b08caf07e912a0f924a8eeea86fe83574.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7e/5c4d8b08caf07e912a0f924a8eeea86fe83574.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/86 - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/86/7c69bcf3f0c256b98dea8a7a4829431fbe969e.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/86/7c69bcf3f0c256b98dea8a7a4829431fbe969e.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/86/7c69bcf3f0c256b98dea8a7a4829431fbe969e.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/11 - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/11/8ffb951fdd99a4d2efb6725230ecea5e3f1205.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/11/8ffb951fdd99a4d2efb6725230ecea5e3f1205.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/11/8ffb951fdd99a4d2efb6725230ecea5e3f1205.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/07 - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/07/83fc3df705c923bcd9cdee2c434f1f74aa4314.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/07/83fc3df705c923bcd9cdee2c434f1f74aa4314.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/07/83fc3df705c923bcd9cdee2c434f1f74aa4314.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65 + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65/8f5767837a54f068adb1ea41d054fe7757eb65.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65/8f5767837a54f068adb1ea41d054fe7757eb65.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/65/8f5767837a54f068adb1ea41d054fe7757eb65.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7f objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7f/aa6b0137bea7a0c841e3a6735b0b5644fa48e5.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7f/aa6b0137bea7a0c841e3a6735b0b5644fa48e5.debug @@ -4486,6 +4497,31 @@ chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/84/d527067414b2ac8e9cd8f31c6bf73a659d0f73.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/84/d527067414b2ac8e9cd8f31c6bf73a659d0f73.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/07 + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/07/83fc3df705c923bcd9cdee2c434f1f74aa4314.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/07/83fc3df705c923bcd9cdee2c434f1f74aa4314.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/07/83fc3df705c923bcd9cdee2c434f1f74aa4314.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/de + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/de/0896aa12ba251e41c21044b1b1d6eec2f05eec.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/de/0896aa12ba251e41c21044b1b1d6eec2f05eec.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/de/0896aa12ba251e41c21044b1b1d6eec2f05eec.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/86 + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/86/7c69bcf3f0c256b98dea8a7a4829431fbe969e.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/86/7c69bcf3f0c256b98dea8a7a4829431fbe969e.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/86/7c69bcf3f0c256b98dea8a7a4829431fbe969e.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/11 + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/11/8ffb951fdd99a4d2efb6725230ecea5e3f1205.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/11/8ffb951fdd99a4d2efb6725230ecea5e3f1205.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/11/8ffb951fdd99a4d2efb6725230ecea5e3f1205.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7e + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7e/5c4d8b08caf07e912a0f924a8eeea86fe83574.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7e/5c4d8b08caf07e912a0f924a8eeea86fe83574.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/7e/5c4d8b08caf07e912a0f924a8eeea86fe83574.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/core/lib/libtheobald.a install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz @@ -4498,7 +4534,7 @@ rm -f debian/python3-mdtraj/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN - dpkg-shlibdeps -Tdebian/python3-mdtraj.substvars debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so + dpkg-shlibdeps -Tdebian/python3-mdtraj.substvars debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-mdtraj/DEBIAN/postinst @@ -4511,23 +4547,23 @@ dh_numpy3 -O--buildsystem=pybuild mv debian/python3-mdtraj.substvars.new debian/python3-mdtraj.substvars dh_gencontrol -O--buildsystem=pybuild - install -m0755 -d debian/python3-mdtraj/DEBIAN - echo misc:Depends= >> debian/python3-mdtraj.substvars - echo misc:Pre-Depends= >> debian/python3-mdtraj.substvars - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN - dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/.debhelper/python3-mdtraj/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-mdtraj-dbgsym -DDepends="python3-mdtraj (= \${binary:Version})" -DDescription="debug symbols for python3-mdtraj" -DBuild-Ids="0783fc3df705c923bcd9cdee2c434f1f74aa4314 118ffb951fdd99a4d2efb6725230ecea5e3f1205 2beb68d56d9614560d84fa2c8d1d287b6959e3c1 3e62b9c4b856611efc929b97143c3ee327b84405 658f5767837a54f068adb1ea41d054fe7757eb65 7e5c4d8b08caf07e912a0f924a8eeea86fe83574 7faa6b0137bea7a0c841e3a6735b0b5644fa48e5 84d527067414b2ac8e9cd8f31c6bf73a659d0f73 867c69bcf3f0c256b98dea8a7a4829431fbe969e bc672ff6e9ee7f3854b1e0d16c104fe83221f42d" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/python-mdtraj-doc/DEBIAN echo misc:Depends= >> debian/python-mdtraj-doc.substvars echo misc:Pre-Depends= >> debian/python-mdtraj-doc.substvars dpkg-gencontrol -ppython-mdtraj-doc -ldebian/changelog -Tdebian/python-mdtraj-doc.substvars -cdebian/control -Pdebian/python-mdtraj-doc -dpkg-gencontrol: warning: package python-mdtraj-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined - chmod 0644 -- debian/python-mdtraj-doc/DEBIAN/control + install -m0755 -d debian/python3-mdtraj/DEBIAN + echo misc:Depends= >> debian/python3-mdtraj.substvars + echo misc:Pre-Depends= >> debian/python3-mdtraj.substvars + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN + dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/.debhelper/python3-mdtraj/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-mdtraj-dbgsym -DDepends="python3-mdtraj (= \${binary:Version})" -DDescription="debug symbols for python3-mdtraj" -DBuild-Ids="0783fc3df705c923bcd9cdee2c434f1f74aa4314 118ffb951fdd99a4d2efb6725230ecea5e3f1205 2beb68d56d9614560d84fa2c8d1d287b6959e3c1 658f5767837a54f068adb1ea41d054fe7757eb65 7e5c4d8b08caf07e912a0f924a8eeea86fe83574 7faa6b0137bea7a0c841e3a6735b0b5644fa48e5 84d527067414b2ac8e9cd8f31c6bf73a659d0f73 867c69bcf3f0c256b98dea8a7a4829431fbe969e bc672ff6e9ee7f3854b1e0d16c104fe83221f42d de0896aa12ba251e41c21044b1b1d6eec2f05eec" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/python3-mdtraj +dpkg-gencontrol: warning: package python-mdtraj-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined + chmod 0644 -- debian/python-mdtraj-doc/DEBIAN/control chmod 0644 -- debian/python3-mdtraj/DEBIAN/control dh_md5sums -O--buildsystem=pybuild - install -m0755 -d debian/python-mdtraj-doc/DEBIAN install -m0755 -d debian/python3-mdtraj/DEBIAN + install -m0755 -d debian/python-mdtraj-doc/DEBIAN cd debian/python3-mdtraj >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-mdtraj-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-mdtraj/DEBIAN/md5sums @@ -4539,9 +4575,9 @@ dpkg-deb --root-owner-group --build debian/python3-mdtraj .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-mdtraj/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python-mdtraj-doc .. -dpkg-deb: building package 'python-mdtraj-doc' in '../python-mdtraj-doc_1.11.0-2_all.deb'. dpkg-deb: building package 'python3-mdtraj' in '../python3-mdtraj_1.11.0-2_amd64.deb'. dpkg-deb: building package 'python3-mdtraj-dbgsym' in '../python3-mdtraj-dbgsym_1.11.0-2_amd64.deb'. +dpkg-deb: building package 'python-mdtraj-doc' in '../python-mdtraj-doc_1.11.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../mdtraj_1.11.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../mdtraj_1.11.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4550,12 +4586,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2697903/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2697903/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3464875 and its subdirectories -I: Current time: Mon Nov 30 02:34:51 -12 2026 -I: pbuilder-time-stamp: 1796049291 +I: removing directory /srv/workspace/pbuilder/2697903 and its subdirectories +I: Current time: Tue Oct 28 22:19:54 +14 2025 +I: pbuilder-time-stamp: 1761639594