Diff of the two buildlogs: -- --- b1/build.log 2024-11-13 00:02:37.238410772 +0000 +++ b2/build.log 2024-11-13 00:05:28.900310847 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Nov 12 11:47:38 -12 2024 -I: pbuilder-time-stamp: 1731455258 +I: Current time: Tue Dec 16 20:25:39 +14 2025 +I: pbuilder-time-stamp: 1765866339 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4126096/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1501125/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 16 06:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1501125/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1501125/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='979015e4dc104229b35603df76774d73' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4126096' - PS1='# ' - PS2='> ' + INVOCATION_ID=f1d7a660f92c4ab3a0e998fbbcbf2479 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1501125 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8eXB2Tiy/pbuilderrc_isMF --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8eXB2Tiy/b1 --logfile b1/build.log libstatgen_1.0.15-8.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8eXB2Tiy/pbuilderrc_588V --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8eXB2Tiy/b2 --logfile b2/build.log libstatgen_1.0.15-8.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4126096/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1501125/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -157,7 +189,7 @@ Get: 37 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2+b3 [5011 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-2 [2742 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 84.1 MB in 8s (10.0 MB/s) +Fetched 84.1 MB in 2s (55.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -328,7 +360,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libstatgen-1.0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libstatgen_1.0.15-8_source.changes +I: user script /srv/workspace/pbuilder/1501125/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1501125/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libstatgen-1.0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libstatgen_1.0.15-8_source.changes dpkg-buildpackage: info: source package libstatgen dpkg-buildpackage: info: source version 1.0.15-8 dpkg-buildpackage: info: source distribution unstable @@ -1383,13 +1419,6 @@ /usr/include/c++/14/new:133:26: note: in a call to allocation function 'operator new []' declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ -general/MathMatrix.cpp: In member function 'Dimension': -general/MathMatrix.cpp:67:61: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] - 67 | ColumnExtras * newExtras = new ColumnExtras [newSize]; - | ^ -/usr/include/c++/14/new:133:26: note: in a call to allocation function 'operator new []' declared here - 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) - | ^ general/PedigreePerson.cpp: In member function '__ct_base ': general/PedigreePerson.cpp:37:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 37 | strings = new String [stringCount]; @@ -1397,6 +1426,13 @@ /usr/include/c++/14/new:133:26: note: in a call to allocation function 'operator new []' declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ +general/MathMatrix.cpp: In member function 'Dimension': +general/MathMatrix.cpp:67:61: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + 67 | ColumnExtras * newExtras = new ColumnExtras [newSize]; + | ^ +/usr/include/c++/14/new:133:26: note: in a call to allocation function 'operator new []' declared here + 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) + | ^ general/PedigreeLoader.cpp: In member function 'Prepare': general/PedigreeLoader.cpp:552:61: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 552 | multiPd = new PedigreeDescription[filenames.Length()]; @@ -1452,49 +1488,49 @@ Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/include Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/copyrights Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/dox -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/dox/man Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/dox/html +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/dox/man Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/obj -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/test -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/test/testFiles -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/test/expected -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/test/expected/noZlib -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/test/results Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/examples Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/examples/printRefPositions Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/examples/printRefPositions/expected Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/examples/pileup +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/test +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/test/testFiles +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/test/results +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/test/expected +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/test/expected/noZlib +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/bam/obj Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/fastq -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/fastq/obj Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/fastq/test Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/fastq/test/expectedResults +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/fastq/obj Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/obj Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/nonOverlapRegions +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/nonOverlapRegions/results Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/reusableVector -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/string -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/string/testFiles +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/memoryMapArrayTest +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/dbsnp +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/dbsnp/testFiles +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/dbsnp/expected Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/inputFileTest Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/inputFileTest/expected Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/inputFileTest/data +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/string +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/string/testFiles +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/referenceSequenceTest Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/packedVectorTest -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/trimSequence -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/memoryMapArrayTest -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/nonOverlapRegions -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/nonOverlapRegions/results Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/cigar +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/trimSequence Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/baseUtilitiesTest -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/referenceSequenceTest -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/dbsnp -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/dbsnp/testFiles -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/test/dbsnp/expected +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/general/obj Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/glf -Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/glf/obj Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/glf/test Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/glf/test/testFiles Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/glf/test/results +Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/glf/obj Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/samtools Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/samtools/obj Searching for files in directory /build/reproducible-path/libstatgen-1.0.15/Makefiles @@ -2148,6 +2184,11 @@ Generating code for file bam/BamInterface.h... Generating code for file bam/CigarHelper.cpp... Generating code for file bam/CigarHelper.h... +Generating code for file bam/examples/pileup/Main.cpp... +Generating code for file bam/examples/printRefPositions/Main.cpp... +Generating code for file bam/test/Main.cpp... +Generating code for file general/test/dbsnp/Main.cpp... +Generating code for file glf/test/Main.cpp... Generating code for file bam/examples/printRefPositions/PrintRefPositions.cpp... Generating code for file bam/examples/printRefPositions/PrintRefPositions.h... Generating code for file bam/GenericSamInterface.cpp... @@ -2202,11 +2243,6 @@ Generating code for file bam/SamValidation.h... Generating code for file bam/test/BamIndexTest.cpp... Generating code for file bam/test/BamIndexTest.h... -Generating code for file bam/examples/pileup/Main.cpp... -Generating code for file bam/examples/printRefPositions/Main.cpp... -Generating code for file bam/test/Main.cpp... -Generating code for file general/test/dbsnp/Main.cpp... -Generating code for file glf/test/Main.cpp... Generating code for file bam/test/Modify.cpp... Generating code for file bam/test/Modify.h... Generating code for file bam/test/ModifyVar.cpp... @@ -2579,84 +2615,135 @@ Generating docs for compound SamStatistics... Generating docs for compound SamTags... Generating docs for compound SamValidationError... -Generating docs for compound Samsh: 1: sh: 1: dot: not found -dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found +Generating docs for compound Samsh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found ValidationErrors... Generating docs for compound SamValidator... Generating docs for compound SetParameter... @@ -2735,7 +2822,7 @@ writing tag file... Running plantuml with JAVA... Running dot... -Generating dot graphs using 21 parallel threads... +Generating dot graphs using 43 parallel threads... Running dot for graph 1/301 Running dot for graph 2/301 Running dot for graph 3/301 @@ -2755,147 +2842,75 @@ Running dot for graph 17/301 Running dot for graph 18/301 Running dot for graph 19/301 -Running dot for grsh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: sh: 1: dot: not found -dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: sh: 1: dot: not found -dot: not found -sh: 1: sh: 1: dot: not found -dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found +Running dot for grsh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found aph 20/301 Running dot for graph 21/301 Running dot for graph 22/301 @@ -3035,84 +3050,105 @@ Running dot for graph 156/301 Running dot for graph 157/301 Running dot for graph 158/301 -Running dot for graph 15sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: sh: 1: dot: not found -dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: sh: 1: dot: not found -dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: sh: 1: dot: not found -dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: sh: 1: dot: not found -dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found +Running dot for graph 15sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found 9/301 Running dot for graph 160/301 Running dot for graph 161/301 @@ -3250,10 +3286,10 @@ Running dot for graph 293/301 Running dot for graph 294/301 Running dot for graph 295/301 -Running dosh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found -sh: 1: dot: not found +Running dosh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found +sh: line 1: dot: command not found t for graph 296/301 Running dot for graph 297/301 Running dot for graph 298/301 @@ -3373,7 +3409,7 @@ Patching output file 111/113 Patching output file 112/113 Patching output file 113/113 -type lookup cache used 20325/65536 hits=184978 misses=20873 +type lookup cache used 20326/65536 hits=184977 misses=20874 symbol lookup cache used 17817/65536 hits=234471 misses=17817 finished... make[1]: Leaving directory '/build/reproducible-path/libstatgen-1.0.15' @@ -3420,7 +3456,7 @@ dh_makeshlibs -a -O--no-parallel dpkg-gensymbols: warning: debian/libstatgen1/DEBIAN/symbols doesn't match completely debian/libstatgen1.symbols --- debian/libstatgen1.symbols (libstatgen1_1.0.15-8_amd64) -+++ dpkg-gensymbolsnugdGh 2024-11-13 00:01:39.338375240 +0000 ++++ dpkg-gensymbolsYWn2Dm 2025-12-16 06:28:18.568143139 +0000 @@ -41,11 +41,11 @@ _Z8ifprintfP9InputFilePKcz@Base 1.0.14 _Z8numerrorPKcz@Base 1.0.14 @@ -4044,25 +4080,25 @@ _ZTV22SamQuerySeqWithRefIter@Base 1.0.14 _ZTV5Tabix@Base 1.0.14 dh_shlibdeps -a -O--no-parallel -dpkg-shlibdeps: warning: symbol gzwrite used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol gzdopen used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol crc32 used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateInit2_ used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflate used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol gzrewind used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol gzread used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol gzdopen used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol deflateEnd used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol deflate used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries dpkg-shlibdeps: warning: symbol gztell64 used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol crc32 used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol gzseek64 used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol gzwrite used by debian/libstatgen1/usr/lib/x86_64-linux-gnu/libStatGen.so.1 found in none of the libraries dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'libstatgen1' in '../libstatgen1_1.0.15-8_amd64.deb'. +dpkg-deb: building package 'libstatgen1-dbgsym' in '../libstatgen1-dbgsym_1.0.15-8_amd64.deb'. dpkg-deb: building package 'libstatgen-dev' in '../libstatgen-dev_1.0.15-8_amd64.deb'. dpkg-deb: building package 'libstatgen-doc' in '../libstatgen-doc_1.0.15-8_all.deb'. -dpkg-deb: building package 'libstatgen1-dbgsym' in '../libstatgen1-dbgsym_1.0.15-8_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libstatgen_1.0.15-8_amd64.buildinfo dpkg-genchanges --build=binary -O../libstatgen_1.0.15-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4070,12 +4106,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1501125/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1501125/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4126096 and its subdirectories -I: Current time: Tue Nov 12 12:02:36 -12 2024 -I: pbuilder-time-stamp: 1731456156 +I: removing directory /srv/workspace/pbuilder/1501125 and its subdirectories +I: Current time: Tue Dec 16 20:28:28 +14 2025 +I: pbuilder-time-stamp: 1765866508