Diff of the two buildlogs: -- --- b1/build.log 2025-11-24 07:48:18.234577564 +0000 +++ b2/build.log 2025-11-24 07:52:00.830817899 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 23 19:45:31 -12 2025 -I: pbuilder-time-stamp: 1763970331 +I: Current time: Mon Dec 28 04:11:18 +14 2026 +I: pbuilder-time-stamp: 1798380678 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,53 +28,85 @@ dpkg-source: info: applying unshuffle-makefile.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2277927/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/709575/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 27 14:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/709575/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/709575/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='c3c36d4e0fed4c39b1c3304d12f720de' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2277927' - PS1='# ' - PS2='> ' + INVOCATION_ID=0ab596895e624f88a7455445e1ecad06 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=709575 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JR9UN8zC/pbuilderrc_TP8z --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JR9UN8zC/b1 --logfile b1/build.log libslow5lib_1.3.1+dfsg-1.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JR9UN8zC/pbuilderrc_rtZF --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JR9UN8zC/b2 --logfile b2/build.log libslow5lib_1.3.1+dfsg-1.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2277927/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/709575/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -242,7 +274,7 @@ Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] -Fetched 60.8 MB in 3s (19.3 MB/s) +Fetched 60.8 MB in 5s (13.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) @@ -603,8 +635,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Nov 24 07:46:46 UTC 2025. -Universal Time is now: Mon Nov 24 07:46:46 UTC 2025. +Local time is now: Sun Dec 27 14:13:23 UTC 2026. +Universal Time is now: Sun Dec 27 14:13:23 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -709,7 +741,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/libslow5lib-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libslow5lib_1.3.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/709575/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/709575/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libslow5lib-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libslow5lib_1.3.1+dfsg-1_source.changes dpkg-buildpackage: info: source package libslow5lib dpkg-buildpackage: info: source version 1.3.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -729,7 +765,7 @@ make[1]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg' dh_auto_configure -- \ -DSLOW5_USE_ZSTD="ON" - cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSLOW5_USE_ZSTD=ON .. + cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DSLOW5_USE_ZSTD=ON .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. @@ -751,11 +787,12 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (2.7s) +-- Configuring done (5.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY @@ -768,7 +805,7 @@ -- Build files have been written to: /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu dh_auto_configure --buildsystem=pybuild I: pybuild base:311: dh_auto_configure --buildsystem=cmake --builddirectory=/build/reproducible-path/libslow5lib-1.3.1+dfsg/.pybuild/cpython3_3.13_slow5/build -- -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.13 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.13/config-3.13-x86_64-linux-gnu/libpython3.13.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.13 -DPython_EXECUTABLE=/usr/bin/python3.13 -DPython_LIBRARY=/usr/lib/python3.13/config-3.13-x86_64-linux-gnu/libpython3.13.so -DPython_INCLUDE_DIR=/usr/include/python3.13 -DPython3_EXECUTABLE=/usr/bin/python3.13 -DPython3_LIBRARY=/usr/lib/python3.13/config-3.13-x86_64-linux-gnu/libpython3.13.so -DPython3_INCLUDE_DIR=/usr/include/python3.13 - cd .pybuild/cpython3_3.13_slow5/build && PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.13 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.13/config-3.13-x86_64-linux-gnu/libpython3.13.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.13 -DPython_EXECUTABLE=/usr/bin/python3.13 -DPython_LIBRARY=/usr/lib/python3.13/config-3.13-x86_64-linux-gnu/libpython3.13.so -DPython_INCLUDE_DIR=/usr/include/python3.13 -DPython3_EXECUTABLE=/usr/bin/python3.13 -DPython3_LIBRARY=/usr/lib/python3.13/config-3.13-x86_64-linux-gnu/libpython3.13.so -DPython3_INCLUDE_DIR=/usr/include/python3.13 ../../.. + cd .pybuild/cpython3_3.13_slow5/build && PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.13 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.13/config-3.13-x86_64-linux-gnu/libpython3.13.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.13 -DPython_EXECUTABLE=/usr/bin/python3.13 -DPython_LIBRARY=/usr/lib/python3.13/config-3.13-x86_64-linux-gnu/libpython3.13.so -DPython_INCLUDE_DIR=/usr/include/python3.13 -DPython3_EXECUTABLE=/usr/bin/python3.13 -DPython3_LIBRARY=/usr/lib/python3.13/config-3.13-x86_64-linux-gnu/libpython3.13.so -DPython3_INCLUDE_DIR=/usr/include/python3.13 ../../.. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. @@ -790,11 +827,12 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (0.6s) +-- Configuring done (2.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY @@ -818,16 +856,16 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg' dh_auto_build - cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libslow5lib-1.3.1+dfsg -B/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/depend +make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/depend make[4]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-1.3.1+dfsg /build/reproducible-path/libslow5lib-1.3.1+dfsg /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles/slow5_static.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/depend make[4]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-1.3.1+dfsg /build/reproducible-path/libslow5lib-1.3.1+dfsg /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles/slow5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' @@ -836,34 +874,34 @@ make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/build make[4]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' -[ 20%] Building C object CMakeFiles/slow5_static.dir/src/slow5_press.c.o -[ 20%] Building C object CMakeFiles/slow5_static.dir/src/slow5.c.o -[ 30%] Building C object CMakeFiles/slow5_static.dir/src/slow5_idx.c.o +[ 80%] Building C object CMakeFiles/slow5.dir/src/slow5_misc.c.o [ 40%] Building C object CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -[ 60%] Building C object CMakeFiles/slow5.dir/src/slow5_idx.c.o -[ 60%] Building C object CMakeFiles/slow5.dir/src/slow5.c.o +[ 80%] Building C object CMakeFiles/slow5_static.dir/src/slow5.c.o +[ 80%] Building C object CMakeFiles/slow5_static.dir/src/slow5_idx.c.o +[ 80%] Building C object CMakeFiles/slow5.dir/src/slow5_press.c.o +[ 80%] Building C object CMakeFiles/slow5.dir/src/slow5_idx.c.o +[ 80%] Building C object CMakeFiles/slow5.dir/src/slow5.c.o +[ 80%] Building C object CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5.c.o -MF CMakeFiles/slow5_static.dir/src/slow5.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5.c -[ 70%] Building C object CMakeFiles/slow5.dir/src/slow5_misc.c.o -/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5_idx.c -/usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5_idx.c +/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5_misc.c /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5_misc.c -/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5.c.o -MF CMakeFiles/slow5.dir/src/slow5.c.o.d -o CMakeFiles/slow5.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5.c -[ 80%] Building C object CMakeFiles/slow5.dir/src/slow5_press.c.o +/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5_idx.c /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_press.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5_press.c -/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5_misc.c +/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5.c.o -MF CMakeFiles/slow5.dir/src/slow5.c.o.d -o CMakeFiles/slow5.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5.c /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_press.c.o -MF CMakeFiles/slow5.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5_press.c -[ 90%] Linking C static library libslow5_static.a -/usr/bin/cmake -P CMakeFiles/slow5_static.dir/cmake_clean_target.cmake -/usr/bin/cmake -E cmake_link_script CMakeFiles/slow5_static.dir/link.txt --verbose=1 -/usr/bin/ar qc libslow5_static.a CMakeFiles/slow5_static.dir/src/slow5.c.o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o CMakeFiles/slow5_static.dir/src/slow5_press.c.o -/usr/bin/ranlib libslow5_static.a -make[4]: Leaving directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Built target slow5_static +/usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-1.3.1+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-1.3.1+dfsg/src/slow5_idx.c +[100%] Linking C static library libslow5_static.a [100%] Linking C shared library libslow5.so +/usr/bin/cmake -P CMakeFiles/slow5_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5.dir/link.txt --verbose=1 +/usr/bin/cmake -E cmake_link_script CMakeFiles/slow5_static.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/slow5.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libslow5.so.0 -o libslow5.so.0 CMakeFiles/slow5.dir/src/slow5.c.o CMakeFiles/slow5.dir/src/slow5_idx.c.o CMakeFiles/slow5.dir/src/slow5_misc.c.o CMakeFiles/slow5.dir/src/slow5_press.c.o -lzstd /usr/bin/cmake -E cmake_symlink_library libslow5.so.0 libslow5.so.0 libslow5.so make[4]: Leaving directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/ar qc libslow5_static.a CMakeFiles/slow5_static.dir/src/slow5.c.o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o CMakeFiles/slow5_static.dir/src/slow5_press.c.o +/usr/bin/ranlib libslow5_static.a +make[4]: Leaving directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' +[100%] Built target slow5_static [100%] Built target slow5 make[3]: Leaving directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 @@ -910,120 +948,12 @@ creating build/lib.linux-x86_64-cpython-313 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/python/pyslow5.o build/temp.linux-x86_64-cpython-313/src/slow5.o build/temp.linux-x86_64-cpython-313/src/slow5_idx.o build/temp.linux-x86_64-cpython-313/src/slow5_misc.o build/temp.linux-x86_64-cpython-313/src/slow5_mt.o build/temp.linux-x86_64-cpython-313/src/slow5_press.o -L. -L/usr/lib/x86_64-linux-gnu -lm -lz -lstreamvbyte -o build/lib.linux-x86_64-cpython-313/pyslow5.cpython-313-x86_64-linux-gnu.so make[1]: Leaving directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg' - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg' -mkdir -p lib -cp -a obj-x86_64-linux-gnu/libslow5_static.a lib/libslow5.a -/usr/bin/make -C test zstd=1 -make[2]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/test' -mkdir bin -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ endian_test.c -o bin/endian_test -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_helpers.c -o bin/unit_test_helpers -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_press.c -o bin/unit_test_press -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_ascii.c -o bin/unit_test_ascii -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_binary.c -o bin/unit_test_binary -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ convert_slow5_test.c -o bin/convert_slow5_test -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_two_rg.c -o bin/unit_test_two_rg -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_lossless.c -o bin/unit_test_lossless -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_empty.c -o bin/unit_test_empty -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_enum.c -o bin/unit_test_enum -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd -make[2]: Leaving directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/test' -for pys in `py3versions -s`; do \ - echo $pys; \ - pydir=`$pys debian/get-pyver-dir.py`; \ - echo $pydir; X=0; \ - PYTHONPATH=`pwd`/build/$pydir $pys -m unittest -v python/test.py || X=$?; \ - if [ "" != 0 ]; then exit $X; fi; \ - done -python3.13 -lib.linux-x86_64-cpython-313 -test_nonExistant_aux (python.test.TestAUX.test_nonExistant_aux) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example2.slow5.idx'. -23-Nov-25 19:48:03 - pyslow5 - [WARNING]: get_read unknown aux name: noExistTest -ok -test_read_id (python.test.TestAUX.test_read_id) ... 23-Nov-25 19:48:03 - pyslow5 - [WARNING]: get_read unknown aux name: noExistTest -23-Nov-25 19:48:03 - pyslow5 - [WARNING]: get_read unknown aux name: noExistTest -ok -test_read_number (python.test.TestAUX.test_read_number) ... 23-Nov-25 19:48:03 - pyslow5 - [WARNING]: get_read unknown aux name: noExistTest -23-Nov-25 19:48:03 - pyslow5 - [WARNING]: get_read unknown aux name: noExistTest -23-Nov-25 19:48:03 - pyslow5 - [WARNING]: get_read unknown aux name: noExistTest -ok -test_start_mux (python.test.TestAUX.test_start_mux) ... 23-Nov-25 19:48:03 - pyslow5 - [WARNING]: get_read unknown aux name: noExistTest -23-Nov-25 19:48:03 - pyslow5 - [WARNING]: get_read unknown aux name: noExistTest -23-Nov-25 19:48:03 - pyslow5 - [WARNING]: get_read unknown aux name: noExistTest -23-Nov-25 19:48:03 - pyslow5 - [WARNING]: get_read unknown aux name: noExistTest -ok -test_get_aux_names (python.test.TestAuxAll.test_get_aux_names) ... ok -test_get_aux_types (python.test.TestAuxAll.test_get_aux_types) ... ok -test_get_read_all_aux (python.test.TestAuxAll.test_get_read_all_aux) ... ok -test_seq_reads_pA_aux_all (python.test.TestAuxAll.test_seq_reads_pA_aux_all) ... ok -test_class_methods (python.test.TestBase.test_class_methods) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example.slow5.idx'. -ok -test_digitisation (python.test.TestBase.test_digitisation) ... ok -test_len_raw_signal (python.test.TestBase.test_len_raw_signal) ... ok -test_offset (python.test.TestBase.test_offset) ... ok -test_pylen_signal (python.test.TestBase.test_pylen_signal) ... ok -test_range (python.test.TestBase.test_range) ... ok -test_read_group (python.test.TestBase.test_read_group) ... ok -test_read_id (python.test.TestBase.test_read_id) ... ok -test_read_type (python.test.TestBase.test_read_type) ... ok -test_sampling_rate (python.test.TestBase.test_sampling_rate) ... ok -test_signal (python.test.TestBase.test_signal) ... ok -test_end_reason_mismatch (python.test.TestEndReason.test_end_reason_mismatch) ... ok -test_write_records_aux_ex_zd (python.test.TestExZd.test_write_records_aux_ex_zd) ... [slow5_encode_signal_press::WARNING] Signal compression method ex-zd is new. While it is stable, just keep an eye. At src/slow5_press.c:116 -ok -test_seq_reads_ex_zd (python.test.TestExZdRead.test_seq_reads_ex_zd) ... ok -test_get_all_headers (python.test.TestHeaders.test_get_all_headers) ... ok -test_get_header_names (python.test.TestHeaders.test_get_header_names) ... ok -test_digitisation (python.test.TestRandomAccess.test_digitisation) ... ok -test_len_raw_signal (python.test.TestRandomAccess.test_len_raw_signal) ... ok -test_offset (python.test.TestRandomAccess.test_offset) ... ok -test_pylen_signal (python.test.TestRandomAccess.test_pylen_signal) ... ok -test_range (python.test.TestRandomAccess.test_range) ... ok -test_read_group (python.test.TestRandomAccess.test_read_group) ... ok -test_read_id (python.test.TestRandomAccess.test_read_id) ... ok -test_sampling_rate (python.test.TestRandomAccess.test_sampling_rate) ... ok -test_signal (python.test.TestRandomAccess.test_signal) ... ok -test_seq_reads (python.test.TestSequentialRead.test_seq_reads) ... ok -test_get_empty_header (python.test.TestWrite.test_get_empty_header) ... ok -test_get_empty_record (python.test.TestWrite.test_get_empty_record) ... ok -test_write_header (python.test.TestWrite.test_write_header) ... ok -test_write_records (python.test.TestWrite.test_write_records) ... ok -test_get_empty_aux (python.test.TestWriteAux.test_get_empty_aux) ... ok -test_write_records_aux (python.test.TestWriteAux.test_write_records_aux) ... ok -test_write_matches_read (python.test.TestWriteData.test_write_matches_read) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example_write.slow5.idx'. -ok -test_base_reads (python.test.TestYieldRead.test_base_reads) ... ok -test_reads_with_no_exist (python.test.TestYieldRead.test_reads_with_no_exist) ... [slow5_idx_get::ERROR] Read ID 'null_read' was not found. At src/slow5_idx.c:539 -ok -test_seq_reads_multi (python.test.testMultiThreading.test_seq_reads_multi) ... ok -test_get_reads_multi (python.test.testMultiThreadingRandom.test_get_reads_multi) ... ok - ----------------------------------------------------------------------- -Ran 45 tests in 0.354s - -OK -r0 -r1 -r2 -r3 -r4 -r5 -0a238451-b9ed-446d-a152-badd074006c4 -0d624d4b-671f-40b8-9798-84f2ccc4d7fc -r0 -r1 -r2 -r3 -r4 -r5 -0a238451-b9ed-446d-a152-badd074006c4 -0d624d4b-671f-40b8-9798-84f2ccc4d7fc -make[1]: Leaving directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg' +dh: command-omitted: The call to "debian/rules override_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/libslow5lib-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libslow5lib-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libslow5lib-1.3.1+dfsg -B/build/reproducible-path/libslow5lib-1.3.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1108,16 +1038,16 @@ diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged -dpkg-shlibdeps: warning: symbol deflate used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflateReset used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol streamvbyte_decode used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol streamvbyte_encode used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol deflateReset used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol zigzag_delta_decode used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateInit2_ used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol deflateReset used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol streamvbyte_decode used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateReset used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol streamvbyte_encode used by debian/libslow5-0t64/usr/lib/x86_64-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake @@ -1125,11 +1055,11 @@ dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'libslow5-dev' in '../libslow5-dev_1.3.1+dfsg-1_amd64.deb'. -dpkg-deb: building package 'libslow5-0t64-dbgsym' in '../libslow5-0t64-dbgsym_1.3.1+dfsg-1_amd64.deb'. -dpkg-deb: building package 'python3-slow5-dbgsym' in '../python3-slow5-dbgsym_1.3.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'libslow5-0t64' in '../libslow5-0t64_1.3.1+dfsg-1_amd64.deb'. +dpkg-deb: building package 'libslow5-0t64-dbgsym' in '../libslow5-0t64-dbgsym_1.3.1+dfsg-1_amd64.deb'. +dpkg-deb: building package 'libslow5-dev' in '../libslow5-dev_1.3.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'python3-slow5' in '../python3-slow5_1.3.1+dfsg-1_amd64.deb'. +dpkg-deb: building package 'python3-slow5-dbgsym' in '../python3-slow5-dbgsym_1.3.1+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libslow5lib_1.3.1+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../libslow5lib_1.3.1+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1137,12 +1067,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/709575/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/709575/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2277927 and its subdirectories -I: Current time: Sun Nov 23 19:48:17 -12 2025 -I: pbuilder-time-stamp: 1763970497 +I: removing directory /srv/workspace/pbuilder/709575 and its subdirectories +I: Current time: Mon Dec 28 04:14:59 +14 2026 +I: pbuilder-time-stamp: 1798380899