Diff of the two buildlogs:

--
--- b1/build.log	2025-01-29 00:05:34.888123142 +0000
+++ b2/build.log	2025-01-29 00:12:54.640203063 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Tue Jan 28 11:59:49 -12 2025
-I: pbuilder-time-stamp: 1738108789
+I: Current time: Tue Mar  3 20:33:38 +14 2026
+I: pbuilder-time-stamp: 1772519618
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -22,52 +22,84 @@
 dpkg-source: info: unpacking libpdb-redo_3.2.1-1.debian.tar.xz
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/1400136/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/2326553/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos15-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Mar  3 06:33 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/2326553/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/2326553/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='amd64'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.2.37(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='4ea3f7a167d14faf804784ba741d35a3'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='1400136'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=361a7fb622734d7cbfc62004b6d48d8d
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=2326553
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ihGY6GiB/pbuilderrc_FgAi --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ihGY6GiB/b1 --logfile b1/build.log libpdb-redo_3.2.1-1.dsc'
-  SUDO_GID='111'
-  SUDO_UID='106'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://46.16.76.132:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ihGY6GiB/pbuilderrc_xzJj --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ihGY6GiB/b2 --logfile b2/build.log libpdb-redo_3.2.1-1.dsc'
+  SUDO_GID=111
+  SUDO_UID=106
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://213.165.73.152:3128
 I: uname -a
-  Linux ionos11-amd64 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/1400136/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/2326553/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -258,7 +290,7 @@
 Get: 129 http://deb.debian.org/debian unstable/main amd64 libgsl-dev amd64 2.8+dfsg-5 [1222 kB]
 Get: 130 http://deb.debian.org/debian unstable/main amd64 libnewuoa0 amd64 0.1.2-1 [18.6 kB]
 Get: 131 http://deb.debian.org/debian unstable/main amd64 libnewuoa-dev amd64 0.1.2-1 [7508 B]
-Fetched 136 MB in 7s (19.7 MB/s)
+Fetched 136 MB in 6s (22.1 MB/s)
 Preconfiguring packages ...
 Selecting previously unselected package libproc2-0:amd64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19843 files and directories currently installed.)
@@ -798,7 +830,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/libpdb-redo-3.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../libpdb-redo_3.2.1-1_source.changes
+I: user script /srv/workspace/pbuilder/2326553/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/2326553/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/libpdb-redo-3.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../libpdb-redo_3.2.1-1_source.changes
 dpkg-buildpackage: info: source package libpdb-redo
 dpkg-buildpackage: info: source version 3.2.1-1
 dpkg-buildpackage: info: source distribution unstable
@@ -853,8 +889,8 @@
 -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
 -- Performing Test COMPILER_HAS_DEPRECATED_ATTR
 -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
--- Configuring done (11.2s)
--- Generating done (0.2s)
+-- Configuring done (2.2s)
+-- Generating done (0.0s)
 CMake Warning:
   Manually-specified variables were not used by the project:
 
@@ -867,7 +903,7 @@
 -- Build files have been written to: /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu
 make[1]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1'
    dh_auto_build
-	cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1
+	cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1
 make[1]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
 /usr/bin/cmake -S/build/reproducible-path/libpdb-redo-3.2.1 -B/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks
@@ -879,29 +915,29 @@
 make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
 make  -f CMakeFiles/pdb-redo.dir/build.make CMakeFiles/pdb-redo.dir/build
 make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
-[  5%] Building CXX object CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o
-[ 11%] Building CXX object CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o
-/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -MF CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/AtomShape.cpp
-[ 17%] Building CXX object CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o
+[  5%] Building CXX object CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o
+[ 11%] Building CXX object CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o
+[ 17%] Building CXX object CMakeFiles/pdb-redo.dir/src/Compound.cpp.o
 /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/BondMap.cpp
-[ 23%] Building CXX object CMakeFiles/pdb-redo.dir/src/Compound.cpp.o
 /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -MF CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/ClipperWrapper.cpp
-[ 29%] Building CXX object CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o
-[ 35%] Building CXX object CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o
 /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Compound.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Compound.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Compound.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Compound.cpp
-/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/DistanceMap.cpp
+[ 35%] Building CXX object CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o
+[ 35%] Building CXX object CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o
+[ 41%] Building CXX object CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o
+[ 41%] Building CXX object CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o
+[ 47%] Building CXX object CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o
 /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -MF CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/MapMaker.cpp
-[ 41%] Building CXX object CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o
-[ 47%] Building CXX object CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o
+[ 52%] Building CXX object CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o
+[ 58%] Building CXX object CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o
+/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -MF CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/AtomShape.cpp
+[ 64%] Building CXX object CMakeFiles/pdb-redo.dir/src/TLS.cpp.o
+/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/DistanceMap.cpp
+[ 70%] Building CXX object CMakeFiles/pdb-redo.dir/src/Version.cpp.o
 /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Ramachandran.cpp
 /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o -MF CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/ResolutionCalculator.cpp
-[ 52%] Building CXX object CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o
 /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o -MF CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/SkipList.cpp
-[ 58%] Building CXX object CMakeFiles/pdb-redo.dir/src/TLS.cpp.o
-[ 64%] Building CXX object CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o
 /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Statistics.cpp
 /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/TLS.cpp.o -MF CMakeFiles/pdb-redo.dir/src/TLS.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/TLS.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/TLS.cpp
-[ 70%] Building CXX object CMakeFiles/pdb-redo.dir/src/Version.cpp.o
 /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Version.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Version.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Version.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Version.cpp
 [ 76%] Linking CXX shared library libpdb-redo.so
 /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb-redo.dir/link.txt --verbose=1
@@ -910,21 +946,21 @@
 make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
 [ 76%] Built target pdb-redo
 make  -f test/CMakeFiles/pdb-redo-unit-test.dir/build.make test/CMakeFiles/pdb-redo-unit-test.dir/depend
-make  -f test/CMakeFiles/restr2ccd-test.dir/build.make test/CMakeFiles/restr2ccd-test.dir/depend
 make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
 cd /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpdb-redo-3.2.1 /build/reproducible-path/libpdb-redo-3.2.1/test /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/test /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/test/CMakeFiles/pdb-redo-unit-test.dir/DependInfo.cmake "--color="
+make  -f test/CMakeFiles/restr2ccd-test.dir/build.make test/CMakeFiles/restr2ccd-test.dir/depend
 make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
 cd /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpdb-redo-3.2.1 /build/reproducible-path/libpdb-redo-3.2.1/test /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/test /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/test/CMakeFiles/restr2ccd-test.dir/DependInfo.cmake "--color="
 make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
 make  -f test/CMakeFiles/pdb-redo-unit-test.dir/build.make test/CMakeFiles/pdb-redo-unit-test.dir/build
-make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
 make  -f test/CMakeFiles/restr2ccd-test.dir/build.make test/CMakeFiles/restr2ccd-test.dir/build
 make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
-[ 82%] Building CXX object test/CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o
-cd /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libpdb-redo-3.2.1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o -MF CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o.d -o CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/test/pdb-redo-unit-test.cpp
-[ 88%] Building CXX object test/CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o
+make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
+[ 82%] Building CXX object test/CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o
 cd /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libpdb-redo-3.2.1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o -MF CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o.d -o CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/test/restr2ccd-test.cpp
+[ 88%] Building CXX object test/CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o
+cd /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libpdb-redo-3.2.1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o -MF CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o.d -o CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/test/pdb-redo-unit-test.cpp
 [ 94%] Linking CXX executable restr2ccd-test
 cd /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/restr2ccd-test.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/restr2ccd-test.dir/link.d "CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o" -o restr2ccd-test  -Wl,-rpath,/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu ../libpdb-redo.so.3.2.1 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libcifpp.so.7.0.9 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libnewuoa.so.0.1.2 /usr/lib/x86_64-linux-gnu/libclipper-ccp4.so /usr/lib/x86_64-linux-gnu/libclipper-contrib.so /usr/lib/x86_64-linux-gnu/libclipper-core.so /usr/lib/x86_64-linux-gnu/libccp4c.so
@@ -939,10 +975,10 @@
 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/CMakeFiles 0
 make[1]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
    dh_auto_test
-	cd obj-x86_64-linux-gnu && make -j20 test ARGS\+=--verbose ARGS\+=-j20
+	cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42
 make[1]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
 Running tests...
-/usr/bin/ctest --force-new-ctest-process --verbose -j20
+/usr/bin/ctest --force-new-ctest-process --verbose -j42
 UpdateCTestConfiguration  from :/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/DartConfiguration.tcl
 Parse Config file:/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/DartConfiguration.tcl
 UpdateCTestConfiguration  from :/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/DartConfiguration.tcl
@@ -968,7 +1004,7 @@
 2: Working Directory: /build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu/test
 2: Test timeout computed to be: 1500
 2: CCD components.cif resource was not found
-2: Randomness seeded to: 2563482714
+2: Randomness seeded to: 3780581503
 2: Could not load the mon_lib_list.cif file from CCP4, please make sure you have installed CCP4 and sourced the environment.
 2: 
 2: Configuration error:
@@ -1003,8 +1039,8 @@
 2: ===============================================================================
 2: All tests passed (12 assertions in 1 test case)
 2: 
-1/2 Test #2: restr2ccd-test ...................   Passed    0.06 sec
-1: Randomness seeded to: 4098579770
+1/2 Test #2: restr2ccd-test ...................   Passed    0.02 sec
+1: Randomness seeded to: 2981781245
 1: Reading map from "/build/reproducible-path/libpdb-redo-3.2.1/test/../examples/1cbs_map.mtz"
 1:   with labels: FB: FWT,PHWT
 1:   with labels: FD: DELFWT,PHDELWT
@@ -1149,16 +1185,16 @@
 1: ===============================================================================
 1: All tests passed (738136 assertions in 7 test cases)
 1: 
-2/2 Test #1: pdb-redo-unit-test ...............   Passed    5.93 sec
+2/2 Test #1: pdb-redo-unit-test ...............   Passed    3.24 sec
 
 100% tests passed, 0 tests failed out of 2
 
-Total Test time (real) =   5.94 sec
+Total Test time (real) =   3.25 sec
 make[1]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
    create-stamp debian/debhelper-build-stamp
    dh_prep
    dh_auto_install
-	cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/libpdb-redo-3.2.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+	cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libpdb-redo-3.2.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
 make[1]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu'
 /usr/bin/cmake -S/build/reproducible-path/libpdb-redo-3.2.1 -B/build/reproducible-path/libpdb-redo-3.2.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
 make  -f CMakeFiles/Makefile2 preinstall
@@ -1174,21 +1210,21 @@
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pdb-redo/pdb-redoTargets.cmake
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pdb-redo/pdb-redoTargets-none.cmake
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Restraints.hpp
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Version.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/SkipList.hpp
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/MapMaker.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/DistanceMap.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Compound.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Minimizer.hpp
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Statistics.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/DistanceMap.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Ramachandran.hpp
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/ClipperWrapper.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/exports.hpp
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/TLS.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/exports.hpp
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/ResolutionCalculator.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Ramachandran.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/BondMap.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Minimizer.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Compound.hpp
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/AtomShape.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Restraints.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/BondMap.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/SkipList.hpp
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pdb-redo/pdb-redoConfig.cmake
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pdb-redo/pdb-redoConfigVersion.cmake
 -- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libpdb-redo.pc
@@ -1212,8 +1248,8 @@
    dh_md5sums
    dh_builddeb
 dpkg-deb: building package 'libpdb-redo-dev' in '../libpdb-redo-dev_3.2.1-1_amd64.deb'.
-dpkg-deb: building package 'libpdb-redo3-dbgsym' in '../libpdb-redo3-dbgsym_3.2.1-1_amd64.deb'.
 dpkg-deb: building package 'libpdb-redo3' in '../libpdb-redo3_3.2.1-1_amd64.deb'.
+dpkg-deb: building package 'libpdb-redo3-dbgsym' in '../libpdb-redo3-dbgsym_3.2.1-1_amd64.deb'.
  dpkg-genbuildinfo --build=binary -O../libpdb-redo_3.2.1-1_amd64.buildinfo
  dpkg-genchanges --build=binary -O../libpdb-redo_3.2.1-1_amd64.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
@@ -1221,12 +1257,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/2326553/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/2326553/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/1400136 and its subdirectories
-I: Current time: Tue Jan 28 12:05:34 -12 2025
-I: pbuilder-time-stamp: 1738109134
+I: removing directory /srv/workspace/pbuilder/2326553 and its subdirectories
+I: Current time: Tue Mar  3 20:35:53 +14 2026
+I: pbuilder-time-stamp: 1772519753