Diff of the two buildlogs: -- --- b1/build.log 2024-11-05 21:29:39.233072931 +0000 +++ b2/build.log 2024-11-05 21:32:59.853945264 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Nov 5 09:22:41 -12 2024 -I: pbuilder-time-stamp: 1730841761 +I: Current time: Tue Dec 9 17:52:38 +14 2025 +I: pbuilder-time-stamp: 1765252358 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking libcifpp_7.0.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3608220/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/895752/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 9 03:52 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/895752/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/895752/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='11fb8c939c014a9c836f0f77b3756fd0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3608220' - PS1='# ' - PS2='> ' + INVOCATION_ID=277640233644426fb43c51682e64c3fa + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=895752 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TK0G5mIH/pbuilderrc_YMib --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TK0G5mIH/b1 --logfile b1/build.log libcifpp_7.0.7-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TK0G5mIH/pbuilderrc_XfRb --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TK0G5mIH/b2 --logfile b2/build.log libcifpp_7.0.7-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3608220/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/895752/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -341,7 +373,7 @@ Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [29.5 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 168 MB in 9s (18.9 MB/s) +Fetched 168 MB in 3s (63.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) @@ -1039,8 +1071,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Nov 5 21:24:54 UTC 2024. -Universal Time is now: Tue Nov 5 21:24:54 UTC 2024. +Local time is now: Tue Dec 9 03:53:38 UTC 2025. +Universal Time is now: Tue Dec 9 03:53:38 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -1232,7 +1264,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libcifpp-7.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libcifpp_7.0.7-3_source.changes +I: user script /srv/workspace/pbuilder/895752/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/895752/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libcifpp-7.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libcifpp_7.0.7-3_source.changes dpkg-buildpackage: info: source package libcifpp dpkg-buildpackage: info: source version 7.0.7-3 dpkg-buildpackage: info: source distribution unstable @@ -1297,7 +1333,7 @@ -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Found Sphinx: /usr/bin/sphinx-build --- Configuring done (13.5s) +-- Configuring done (7.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1315,7 +1351,7 @@ export http_proxy=127.0.0.1:9 export https_proxy=127.0.0.1:9 dh_auto_build - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libcifpp-7.0.7 -B/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1325,64 +1361,70 @@ make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/depend make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/CMakeFiles/Doxygen-libcifpp.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/CMakeFiles/cifpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/CMakeFiles/Doxygen-libcifpp.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/CMakeFiles/Sphinx-libcifpp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/build -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/build make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/build +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' [ 2%] Generating xml -[ 6%] Generating xml -[ 6%] Building CXX object CMakeFiles/cifpp.dir/src/category.cpp.o -[ 9%] Building CXX object CMakeFiles/cifpp.dir/src/file.cpp.o -[ 13%] Building CXX object CMakeFiles/cifpp.dir/src/datablock.cpp.o -[ 13%] Building CXX object CMakeFiles/cifpp.dir/src/row.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/xml -[ 15%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o +[ 4%] Building CXX object CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/xml -[ 20%] Building CXX object CMakeFiles/cifpp.dir/src/item.cpp.o -[ 22%] Building CXX object CMakeFiles/cifpp.dir/src/validate.cpp.o -[ 22%] Building CXX object CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -[ 25%] Building CXX object CMakeFiles/cifpp.dir/src/condition.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/category.cpp -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/condition.cpp.o -MF CMakeFiles/cifpp.dir/src/condition.cpp.o.d -o CMakeFiles/cifpp.dir/src/condition.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/condition.cpp -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/datablock.cpp.o -MF CMakeFiles/cifpp.dir/src/datablock.cpp.o.d -o CMakeFiles/cifpp.dir/src/datablock.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/datablock.cpp +[ 9%] Building CXX object CMakeFiles/cifpp.dir/src/item.cpp.o +[ 9%] Generating xml +[ 11%] Building CXX object CMakeFiles/cifpp.dir/src/file.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -MF CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/dictionary_parser.cpp -[ 27%] Building CXX object CMakeFiles/cifpp.dir/src/text.cpp.o +[ 15%] Building CXX object CMakeFiles/cifpp.dir/src/validate.cpp.o +[ 13%] Building CXX object CMakeFiles/cifpp.dir/src/category.cpp.o +[ 18%] Building CXX object CMakeFiles/cifpp.dir/src/text.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/file.cpp.o -MF CMakeFiles/cifpp.dir/src/file.cpp.o.d -o CMakeFiles/cifpp.dir/src/file.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/file.cpp +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/xml /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/item.cpp.o -MF CMakeFiles/cifpp.dir/src/item.cpp.o.d -o CMakeFiles/cifpp.dir/src/item.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/item.cpp -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/parser.cpp.o -MF CMakeFiles/cifpp.dir/src/parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/parser.cpp -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra 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CXX object CMakeFiles/cifpp.dir/src/symmetry.cpp.o +[ 38%] Building CXX object CMakeFiles/cifpp.dir/src/row.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/point.cpp.o -MF CMakeFiles/cifpp.dir/src/point.cpp.o.d -o CMakeFiles/cifpp.dir/src/point.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/point.cpp +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include 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-I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif.cpp +[ 52%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/validate-pdbx.cpp +[ 54%] Generating docs +[ 56%] Generating docs +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/Doxyfile +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/Doxyfile Doxygen version used: 1.9.8 Searching for include files... Searching for example files... @@ -1693,23 +1735,34 @@ /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. if++/point.hpp... Generating code for file cif++/row.hpp... Generating code for file cif++/symmetry.hpp... @@ -1796,24 +1849,7 @@ Generating docs for compound cif::parser... Generating docs for compound cif::point_type... Generating docs for compound cif::progress_bar... -G/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. -if++/point.hpp... +Gif++/point.hpp... Generating code for file cif++/row.hpp... Generating code for file cif++/symmetry.hpp... Generating code for file cif++/text.hpp... @@ -1899,7 +1935,19 @@ Generating docs for compound cif::parser... Generating docs for compound cif::point_type... Generating docs for compound cif::progress_bar... -Generating docs for compound cif::quaternion_type... +G/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. +enerating docs for compound cif::quaternion_type... Generating docs for compound cif::row... Generating docs for compound cif::row_handle... Generating docs for compound cif::row_initializer... @@ -1978,25 +2026,7 @@ Generating XML output for class cif::item_value Generating XML output for class cif::iterator_impl Generating XML output for class cif::iterator_impl< Category > -Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: - parameter 'pdbx_file' -enerating docs for compound cif::quaternion_type... +Generating XML output for class cif::iterator_impl< Caenerating docs for compound cif::quaternion_type... Generating docs for compound cif::row... Generating docs for compound cif::row_handle... Generating docs for compound cif::row_initializer... @@ -2075,7 +2105,31 @@ Generating XML output for class cif::item_value Generating XML output for class cif::iterator_impl Generating XML output for class cif::iterator_impl< Category > -Generating XML output for class cif::iterator_impl< Category, T > +Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: + parameter 'pdbx_file' +tegory, T > Generating XML output for class cif::iterator_proxy Generating XML output for class cif::key Generating XML output for class cif::category::link @@ -2167,20 +2221,6 @@ type lookup cache used 4688/65536 hits=49233 misses=4934 symbol lookup cache used 5033/65536 hits=61776 misses=5033 finished... -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: - parameter 'pdbx_file' -[ 52%] Generating documentation with Sphinx -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/sphinx-build -b html -Dbreathe_projects.libcifpp=/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/xml /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/sphinx tegory, T > Generating XML output for class cif::iterator_proxy Generating XML output for class cif::key @@ -2273,24 +2313,20 @@ type lookup cache used 4688/65536 hits=49233 misses=4934 symbol lookup cache used 5033/65536 hits=61776 misses=5033 finished... +[ 59%] Generating documentation with Sphinx +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/sphinx-build -b html -Dbreathe_projects.libcifpp=/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/xml /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/sphinx make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 52%] Built target Doxygen-libcifpp -[ 54%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif_remark_3.cpp +[ 59%] Built target Doxygen-libcifpp Running Sphinx v7.4.7 loading translations [en]... done -[ 56%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp /usr/lib/python3/dist-packages/breathe/project.py:116: RemovedInSphinx80Warning: Sphinx 8 will drop support for representing paths as strings. Use "pathlib.Path" or "os.fspath" instead. self._default_build_dir = os.path.dirname(app.doctreedir.rstrip(os.sep)) making output directory... done -[ 59%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/validate-pdbx.cpp (!) Unabridged API: unexpected kind 'concept' (IGNORED) [~] Exhale: parsing Doxygen XML. -[+] Exhale: finished parsing Doxygen XML in 14.83 seconds. +[+] Exhale: finished parsing Doxygen XML in 3.54 seconds. [~] Exhale: generating reStructuredText documents. -[+] Exhale: generated reStructuredText documents in 5.34 seconds. +[+] Exhale: generated reStructuredText documents in 2.4 seconds. myst v4.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'colon_fence'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... @@ -2298,7 +2334,6 @@ updating environment: [new config] 332 added, 0 changed, 0 removed reading sources... [ 0%] api/classcif_1_1atom__type__traits reading sources... [ 1%] api/classcif_1_1category -reading sources... [ 1%] api/classcif_1_1cell In file included from /usr/include/c++/14/string:42, from /usr/include/c++/14/stdexcept:39, from /usr/include/c++/14/system_error:43, @@ -2318,6 +2353,7 @@ /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp:780:30: note: ‘letter_can’ was declared here 780 | char letter_can; | ^~~~~~~~~~ +reading sources... [ 1%] api/classcif_1_1cell reading sources... [ 1%] api/classcif_1_1compound reading sources... [ 2%] api/classcif_1_1compound__factory reading sources... [ 2%] api/classcif_1_1compound__source @@ -2436,6 +2472,34 @@ reading sources... [ 36%] api/function_namespacecif_1a0cf4d792e3cf8fb29aa18b8c585b1426 reading sources... [ 36%] api/function_namespacecif_1a0e173ffb184bab07d483866b6f2f7274 reading sources... [ 36%] api/function_namespacecif_1a0f6dd8dc18df398b116c0c2343c2cfee +In file included from /usr/include/eigen3/Eigen/Core:341, + from /usr/include/eigen3/Eigen/Eigenvalues:11, + from /build/reproducible-path/libcifpp-7.0.7/src/symmetry.cpp:35: +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]’: +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] + 327 | internal::triangular_matrix_vector_product + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 328 | + | ~~~~~~~~~ + 332 | ::run(actualLhs.rows(),actualLhs.cols(), + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 333 | actualLhs.data(),actualLhs.outerStride(), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 334 | actualRhsPtr,1, + | ~~~~~~~~~~~~~~~ + 335 | dest.data(),dest.innerStride(), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 336 | actualAlpha); + | ~~~~~~~~~~~~ +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const float*’ to ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]’ declared here + 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reading sources... [ 37%] api/function_namespacecif_1a1020ee51b50043210b5e9c8eaecd4c28 reading sources... [ 37%] api/function_namespacecif_1a10ff1c475902516ebcd1cf4059ac513b reading sources... [ 37%] api/function_namespacecif_1a1425b605f99bf04eeb638f55c0d91566 @@ -2478,34 +2542,6 @@ reading sources... [ 48%] api/function_namespacecif_1a65ac1856b4a8a6675e6a0f0d9b5edfaa reading sources... [ 49%] api/function_namespacecif_1a674345a2d0fb9af13bea9c833076cec0 reading sources... [ 49%] api/function_namespacecif_1a7555a1d6c76bc1cef206fab9a8d67fad -In file included from /usr/include/eigen3/Eigen/Core:341, - from /usr/include/eigen3/Eigen/Eigenvalues:11, - from /build/reproducible-path/libcifpp-7.0.7/src/symmetry.cpp:35: -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]’: -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] - 327 | internal::triangular_matrix_vector_product - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 328 | - | ~~~~~~~~~ - 332 | ::run(actualLhs.rows(),actualLhs.cols(), - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 333 | actualLhs.data(),actualLhs.outerStride(), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 334 | actualRhsPtr,1, - | ~~~~~~~~~~~~~~~ - 335 | dest.data(),dest.innerStride(), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 336 | actualAlpha); - | ~~~~~~~~~~~~ -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const float*’ to ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]’ declared here - 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reading sources... [ 49%] api/function_namespacecif_1a75df878566a514b909141bad937280f4 reading sources... [ 50%] api/function_namespacecif_1a7b0b6dec945a1157aa9d455fd35494df reading sources... [ 50%] api/function_namespacecif_1a7da448991e41eef2fa6dbf113827f958 @@ -3003,10 +3039,7 @@ writing output... [ 75%] api/program_listing_file_cif++_atom_type.hpp writing output... [ 75%] api/program_listing_file_cif++_category.hpp writing output... [ 76%] api/program_listing_file_cif++_compound.hpp -[ 61%] Linking CXX shared library libcifpp.so -/usr/bin/cmake -E cmake_link_script CMakeFiles/cifpp.dir/link.txt --verbose=1 writing output... [ 76%] api/program_listing_file_cif++_condition.hpp -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcifpp.so.7.0 -o libcifpp.so.7.0.7 CMakeFiles/cifpp.dir/src/category.cpp.o CMakeFiles/cifpp.dir/src/condition.cpp.o CMakeFiles/cifpp.dir/src/datablock.cpp.o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o CMakeFiles/cifpp.dir/src/file.cpp.o CMakeFiles/cifpp.dir/src/item.cpp.o CMakeFiles/cifpp.dir/src/parser.cpp.o CMakeFiles/cifpp.dir/src/row.cpp.o CMakeFiles/cifpp.dir/src/validate.cpp.o CMakeFiles/cifpp.dir/src/text.cpp.o CMakeFiles/cifpp.dir/src/utilities.cpp.o CMakeFiles/cifpp.dir/src/atom_type.cpp.o CMakeFiles/cifpp.dir/src/compound.cpp.o CMakeFiles/cifpp.dir/src/point.cpp.o CMakeFiles/cifpp.dir/src/symmetry.cpp.o CMakeFiles/cifpp.dir/src/model.cpp.o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o "CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o" /usr/lib/x86_64-linux-gnu/libz.so writing output... [ 76%] api/program_listing_file_cif++_datablock.hpp writing output... [ 77%] api/program_listing_file_cif++_dictionary_parser.hpp writing output... [ 77%] api/program_listing_file_cif++_exports.hpp @@ -3035,19 +3068,8 @@ writing output... [ 84%] api/structcif_1_1category_1_1item__entry writing output... [ 84%] api/structcif_1_1category_1_1link writing output... [ 84%] api/structcif_1_1category__validator -/usr/bin/cmake -E cmake_symlink_library libcifpp.so.7.0.7 libcifpp.so.7.0 libcifpp.so writing output... [ 85%] api/structcif_1_1colour_1_1detail_1_1coloured__string__t -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 61%] Built target cifpp -make -f test/CMakeFiles/test-main.dir/build.make test/CMakeFiles/test-main.dir/depend -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/test-main.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/test-main.dir/build.make test/CMakeFiles/test-main.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' writing output... [ 85%] api/structcif_1_1compound__atom -[ 63%] Building CXX object test/CMakeFiles/test-main.dir/test-main.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/test-main.dir/test-main.cpp.o -MF CMakeFiles/test-main.dir/test-main.cpp.o.d -o CMakeFiles/test-main.dir/test-main.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/test-main.cpp writing output... [ 85%] api/structcif_1_1compound__bond writing output... [ 86%] api/structcif_1_1empty__type writing output... [ 86%] api/structcif_1_1iless @@ -3073,6 +3095,9 @@ writing output... [ 92%] api/typedef_namespacecif_1a74bfe90596358d194adfab0eb0054b79 writing output... [ 92%] api/typedef_namespacecif_1a88b677fc53a3f1e8e0f15cdb6dc52cb7 writing output... [ 92%] api/typedef_namespacecif_1a8dcfa853b7f2c8b6dcc921d0c646ab46 +[ 61%] Linking CXX shared library libcifpp.so +/usr/bin/cmake -E cmake_link_script CMakeFiles/cifpp.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcifpp.so.7.0 -o libcifpp.so.7.0.7 CMakeFiles/cifpp.dir/src/category.cpp.o CMakeFiles/cifpp.dir/src/condition.cpp.o CMakeFiles/cifpp.dir/src/datablock.cpp.o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o CMakeFiles/cifpp.dir/src/file.cpp.o CMakeFiles/cifpp.dir/src/item.cpp.o CMakeFiles/cifpp.dir/src/parser.cpp.o CMakeFiles/cifpp.dir/src/row.cpp.o CMakeFiles/cifpp.dir/src/validate.cpp.o CMakeFiles/cifpp.dir/src/text.cpp.o CMakeFiles/cifpp.dir/src/utilities.cpp.o CMakeFiles/cifpp.dir/src/atom_type.cpp.o CMakeFiles/cifpp.dir/src/compound.cpp.o CMakeFiles/cifpp.dir/src/point.cpp.o CMakeFiles/cifpp.dir/src/symmetry.cpp.o CMakeFiles/cifpp.dir/src/model.cpp.o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o "CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o" /usr/lib/x86_64-linux-gnu/libz.so writing output... [ 93%] api/typedef_namespacecif_1aaca06426423d3d411d330b53965e1b2d writing output... [ 93%] api/typedef_namespacecif_1ab059fcaf3572f71d81e93484789bc0e0 writing output... [ 93%] api/typedef_namespacecif_1ae5965db5577f7f70118a5d976232d966 @@ -3088,13 +3113,24 @@ writing output... [ 96%] api/variable_namespacecif_1a6dacacf91cee6e2c246a2334f0fbd607 writing output... [ 97%] api/variable_namespacecif_1a9347107ebb4ef72dca122c3285453c4f writing output... [ 97%] api/variable_namespacecif_1a9ebb6f223c638daee2bc1bf285be72c8 +/usr/bin/cmake -E cmake_symlink_library libcifpp.so.7.0.7 libcifpp.so.7.0 libcifpp.so writing output... [ 97%] api/variable_namespacecif_1ac0cd49271cfb2fd68933871ab34217d6 +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' writing output... [ 98%] api/variable_namespacecif_1aee0d4f8adeaf464b4201156efbb97f73 writing output... [ 98%] basics writing output... [ 98%] bitsandpieces writing output... [ 98%] compound writing output... [ 99%] genindex writing output... [ 99%] index +[ 61%] Built target cifpp +make -f test/CMakeFiles/test-main.dir/build.make test/CMakeFiles/test-main.dir/depend +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/test-main.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make -f test/CMakeFiles/test-main.dir/build.make test/CMakeFiles/test-main.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +[ 63%] Building CXX object test/CMakeFiles/test-main.dir/test-main.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/test-main.dir/test-main.cpp.o -MF CMakeFiles/test-main.dir/test-main.cpp.o.d -o CMakeFiles/test-main.dir/test-main.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/test-main.cpp writing output... [ 99%] model writing output... [100%] resources writing output... [100%] symmetry @@ -3118,26 +3154,28 @@ The HTML pages are in sphinx. make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +[ 63%] Built target Sphinx-libcifpp +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' [ 63%] Built target test-main make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/depend make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/depend make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/depend make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/depend make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/depend -make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/unit-v2-test.dir/DependInfo.cmake "--color=" +make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/unit-3d-test.dir/DependInfo.cmake "--color=" make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/depend -make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/format-test.dir/DependInfo.cmake "--color=" +make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/unit-3d-test.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/model-test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/rename-compound-test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/model-test.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/sugar-test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/spinner-test.dir/DependInfo.cmake "--color=" @@ -3146,14 +3184,16 @@ make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/build make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/build +make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/build +make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/build +make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/build make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/build -make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/build +make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/build +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/build make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/build @@ -3164,51 +3204,47 @@ make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 65%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -[ 68%] Building CXX object test/CMakeFiles/format-test.dir/format-test.cpp.o -[ 72%] Building CXX object test/CMakeFiles/model-test.dir/model-test.cpp.o -[ 72%] Building CXX object test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -MF CMakeFiles/sugar-test.dir/sugar-test.cpp.o.d -o CMakeFiles/sugar-test.dir/sugar-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/sugar-test.cpp -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/format-test.dir/format-test.cpp.o -MF CMakeFiles/format-test.dir/format-test.cpp.o.d -o CMakeFiles/format-test.dir/format-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/format-test.cpp +[ 75%] Building CXX object test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o [ 75%] Building CXX object test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -[ 77%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o +[ 75%] Building CXX object test/CMakeFiles/model-test.dir/model-test.cpp.o +[ 75%] Building CXX object test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o +[ 75%] Building CXX object test/CMakeFiles/format-test.dir/format-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -MF CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o.d -o CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/unit-v2-test.cpp cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/model-test.dir/model-test.cpp.o -MF CMakeFiles/model-test.dir/model-test.cpp.o.d -o CMakeFiles/model-test.dir/model-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/model-test.cpp -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra 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CMakeFiles/format-test.dir/format-test.cpp.o.d -o CMakeFiles/format-test.dir/format-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/format-test.cpp cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -MF CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o.d -o CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/rename-compound-test.cpp -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -MF CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o.d -o CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/unit-v2-test.cpp -[ 79%] Building CXX object test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -MF CMakeFiles/spinner-test.dir/spinner-test.cpp.o.d -o CMakeFiles/spinner-test.dir/spinner-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/spinner-test.cpp -[ 81%] Building CXX object test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -MF CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o.d -o CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/unit-3d-test.cpp -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 81%] Built target Sphinx-libcifpp +[ 79%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o +[ 81%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -MF CMakeFiles/spinner-test.dir/spinner-test.cpp.o.d -o CMakeFiles/spinner-test.dir/spinner-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/spinner-test.cpp +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -MF CMakeFiles/sugar-test.dir/sugar-test.cpp.o.d -o CMakeFiles/sugar-test.dir/sugar-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/sugar-test.cpp +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -MF CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o.d -o CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/validate-pdbx-test.cpp [ 84%] Linking CXX executable spinner-test cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/spinner-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/spinner-test.dir/spinner-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o spinner-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' [ 84%] Built target spinner-test -[ 86%] Linking CXX executable sugar-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/sugar-test.dir/sugar-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o sugar-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so -[ 88%] Linking CXX executable format-test +[ 86%] Linking CXX executable format-test cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/format-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/format-test.dir/format-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o format-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 88%] Built target sugar-test -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 88%] Built target format-test -[ 90%] Linking CXX executable rename-compound-test +[ 86%] Built target format-test +[ 88%] Linking CXX executable rename-compound-test cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/rename-compound-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o rename-compound-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 90%] Built target rename-compound-test +[ 88%] Built target rename-compound-test +[ 90%] Linking CXX executable sugar-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/sugar-test.dir/sugar-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o sugar-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so [ 93%] Linking CXX executable validate-pdbx-test cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/validate-pdbx-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o validate-pdbx-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +[ 93%] Built target sugar-test +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' [ 93%] Built target validate-pdbx-test [ 95%] Linking CXX executable model-test cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/model-test.dir/link.txt --verbose=1 @@ -3258,10 +3294,10 @@ make[2]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7' dh_auto_test - cd obj-x86_64-linux-gnu && make -j20 test ARGS\+=--verbose ARGS\+=-j20 + cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j20 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/DartConfiguration.tcl @@ -3321,7 +3357,7 @@ 8: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/validate-pdbx-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" 8: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test 8: Test timeout computed to be: 1500 -3: Randomness seeded to: 1086759817 +3: Randomness seeded to: 3449144544 3: Hello, world! 3: Hello, world! 3: Hello, world! @@ -3332,69 +3368,23 @@ 3: =============================================================================== 3: All tests passed (2 assertions in 2 test cases) 3: -1/8 Test #3: format-test ...................... Passed 0.09 sec -1: Randomness seeded to: 1538184066 +1/8 Test #3: format-test ...................... Passed 0.01 sec +5: Randomness seeded to: 1396369219 +5: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary +5: choosing N +1: Randomness seeded to: 622439885 1: warning: no child to parent links were found for child cat_1 and parent cat_3 1: Error parsing mmCIF: This file does not seem to be an mmCIF file -5: Randomness seeded to: 421856515 -5: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary +5: inconsistent mandatory value for _diffrn_refln.frame_id in dictionary 5: choosing N -4: Randomness seeded to: 1378873078 +4: Randomness seeded to: 2348978510 4: Warning: no atoms loaded 4: Warning: no atoms loaded -1: Adding mandatory item conn_type_id to category struct_conn -1: Adding mandatory item ptnr1_label_asym_id to category struct_conn -1: Adding mandatory item ptnr1_label_comp_id to category struct_conn -1: Adding mandatory item ptnr1_label_seq_id to category struct_conn -1: Adding mandatory item ptnr2_label_asym_id to category struct_conn -1: Adding mandatory item ptnr2_label_comp_id to category struct_conn -1: Adding mandatory item ptnr2_label_seq_id to category struct_conn -1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme -1: -1: Configuration error: -1: -1: The attempt to retrieve compound information for "&&&" failed. -1: -1: This information is searched for in a CCD file called components.cif or -1: components.cif.gz which should be located in one of the following directories: -1: -1: -1: (Note that you can add a directory to the search paths by setting the -1: LIBCIFPP_DATA_DIR environmental variable) -1: -1: On Linux an optional cron script might have been installed that automatically updates -1: components.cif and mmCIF dictionary files. This script only works when the file -1: libcifpp.conf contains an uncommented line with the text: -1: -1: update=true -1: -1: If you do not have a working cron script, you can manually update the files -1: in /var/cache/libcifpp using the following commands: -1: -1: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif -1: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic -1: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic -1: -1: The current order of compound factory objects is: -1: -1: CCD components file: "/build/reproducible-path/libcifpp-7.0.7/test/REA_v2.cif" -1: CCD components file: "/build/reproducible-path/libcifpp-7.0.7/test/HEM.cif" -1: CCD components.cif resource -1: -1: The following named resources were loaded: -1: components.cif -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/ccd-subset.cif" -1: mmcif_pdbx.dic -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/mmcif_pdbx.dic" -5: inconsistent mandatory value for _diffrn_refln.frame_id in dictionary -5: choosing N -4: =============================================================================== -4: All tests passed (8500 assertions in 6 test cases) -4: -2/8 Test #4: model-test ....................... Passed 0.37 sec -8: Randomness seeded to: 388185794 +8: Randomness seeded to: 3188509355 8: =============================================================================== 8: All tests passed (15 assertions in 1 test case) 8: -3/8 Test #8: validate-pdbx-test ............... Passed 0.34 sec +2/8 Test #8: validate-pdbx-test ............... Passed 0.12 sec 5: Creating component index ... done 5: Loading component RXA... done 5: Will not rename in child category since there are already rows that link to the parent @@ -5714,7 +5704,6 @@ 5: _pdbx_struct_sheet_hbond.range_2_auth_seq_id 5: A 1 2 O PHE A 65 ? O PHE A 65 N PHE A 50 ? N PHE A 50 5: A 2 3 N SER A 55 ? N SER A 55 O ALA A 40 ? O ALA A 40 -1: Choosing X-PLOR version '' as refinement program. Score = 1 5: A 3 4 N ILE A 43 ? N ILE A 43 O GLY A 5 ? O GLY A 5 5: A 4 5 N GLU A 13 ? N GLU A 13 O THR A 131 ? O THR A 131 5: A 5 6 N TYR A 134 ? N TYR A 134 O LEU A 119 ? O LEU A 119 @@ -5724,7 +5713,6 @@ 5: A 9 10 N SER A 83 ? N SER A 83 O PHE A 71 ? O PHE A 71 5: # 5: Skipping validation of empty category pdbx_branch_scheme -1: Adding mandatory item value to category pdbx_struct_assembly_prop 1: Adding mandatory item conn_type_id to category struct_conn 1: Adding mandatory item ptnr1_label_asym_id to category struct_conn 1: Adding mandatory item ptnr1_label_comp_id to category struct_conn @@ -5732,6 +5720,45 @@ 1: Adding mandatory item ptnr2_label_asym_id to category struct_conn 1: Adding mandatory item ptnr2_label_comp_id to category struct_conn 1: Adding mandatory item ptnr2_label_seq_id to category struct_conn +1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme +1: +1: Configuration error: +1: +1: The attempt to retrieve compound information for "&&&" failed. +1: +1: This information is searched for in a CCD file called components.cif or +1: components.cif.gz which should be located in one of the following directories: +1: +1: +1: (Note that you can add a directory to the search paths by setting the +1: LIBCIFPP_DATA_DIR environmental variable) +1: +1: On Linux an optional cron script might have been installed that automatically updates +1: components.cif and mmCIF dictionary files. This script only works when the file +1: libcifpp.conf contains an uncommented line with the text: +1: +1: update=true +1: +1: If you do not have a working cron script, you can manually update the files +1: in /var/cache/libcifpp using the following commands: +1: +1: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif +1: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic +1: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic +1: +1: The current order of compound factory objects is: +1: +1: CCD components file: "/build/reproducible-path/libcifpp-7.0.7/test/REA_v2.cif" +1: CCD components file: "/build/reproducible-path/libcifpp-7.0.7/test/HEM.cif" +1: CCD components.cif resource +1: +1: The following named resources were loaded: +1: components.cif -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/ccd-subset.cif" +1: mmcif_pdbx.dic -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/mmcif_pdbx.dic" +4: =============================================================================== +4: All tests passed (8500 assertions in 6 test cases) +4: +3/8 Test #4: model-test ....................... Passed 0.18 sec 5: data_1CBS 5: # 5: _entry.id 1CBS @@ -8065,35 +8092,44 @@ 5: test cases: 1 | 1 passed 5: assertions: - none - 5: +4/8 Test #5: rename-compound-test ............. Passed 0.21 sec +1: Choosing X-PLOR version '' as refinement program. Score = 1 +1: Adding mandatory item value to category pdbx_struct_assembly_prop +1: Adding mandatory item conn_type_id to category struct_conn +1: Adding mandatory item ptnr1_label_asym_id to category struct_conn +1: Adding mandatory item ptnr1_label_comp_id to category struct_conn +1: Adding mandatory item ptnr1_label_seq_id to category struct_conn +1: Adding mandatory item ptnr2_label_asym_id to category struct_conn +1: Adding mandatory item ptnr2_label_comp_id to category struct_conn +1: Adding mandatory item ptnr2_label_seq_id to category struct_conn 1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme 1: =============================================================================== 1: All tests passed (100465 assertions in 51 test cases) 1: -4/8 Test #1: unit-v2-test ..................... Passed 0.68 sec -5/8 Test #5: rename-compound-test ............. Passed 0.63 sec -2: Randomness seeded to: 3622387852 +5/8 Test #1: unit-v2-test ..................... Passed 0.33 sec +2: Randomness seeded to: 2438204730 2: (1.70711,1.70711,0) 2: =============================================================================== 2: All tests passed (5099624 assertions in 15 test cases) 2: -6/8 Test #2: unit-3d-test ..................... Passed 2.95 sec -7: Randomness seeded to: 2725702991 +6/8 Test #2: unit-3d-test ..................... Passed 1.50 sec +6: Randomness seeded to: 578664377 +6: =============================================================================== +6: All tests passed (10 assertions in 2 test cases) +6: +7/8 Test #6: sugar-test ....................... Passed 2.61 sec +7: Randomness seeded to: 503982257 7: =============================================================================== 7: test cases: 3 | 3 passed 7: assertions: - none - 7: -7/8 Test #7: spinner-test ..................... Passed 4.78 sec -6: Randomness seeded to: 2176656523 -6: =============================================================================== -6: All tests passed (10 assertions in 2 test cases) -6: -8/8 Test #6: sugar-test ....................... Passed 5.62 sec +8/8 Test #7: spinner-test ..................... Passed 4.72 sec 100% tests passed, 0 tests failed out of 8 -Total Test time (real) = 5.70 sec +Total Test time (real) = 4.73 sec make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' - rm -fr -- /tmp/dh-xdg-rundir-TtEs45b8 + rm -fr -- /tmp/dh-xdg-rundir-Cg1BDp3X create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/libcifpp-dev.substvars debian/libcifpp-doc.substvars debian/libcifpp7.substvars debian/libcifpp-data.substvars @@ -8102,7 +8138,7 @@ install -m0755 -d debian/libcifpp-data/etc/libcifpp/cache-update.d dh_auto_install install -m0755 -d /build/reproducible-path/libcifpp-7.0.7/debian/tmp - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/libcifpp-7.0.7/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libcifpp-7.0.7/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libcifpp-7.0.7 -B/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -8155,710 +8191,710 @@ A configuration file has been written to /etc/libcifpp.conf, please edit this file to enable automatic updates -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/etc/libcifpp/cache-update.d -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/compound.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/search.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/genindex.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/searchindex.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/index.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/bitsandpieces.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/model.rst.txt -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/compound.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/basics.rst.txt -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/symmetry.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/index.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/genindex.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/bitsandpieces.rst.txt -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/resources.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/basics.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/model.rst.txt -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1validation__exception.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++.hpp.rst.txt --- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a4f2dd5c988ef77316bb4fdda57146fd5.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_pdb_8hpp_1aa4bb7030a077b462d75b328a2d6ef70d.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/enum_namespacecif_1a636b6271c6af17a0d73dbe4557061c03.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1iterator__impl_3_01Category_00_01T_01_4.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++_gzio.hpp.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/structcif_1_1compound__bond.rst.txt +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a91dadafdbe6019e5215f9992dc67ca4c.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/file_cif++_exports.hpp.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++.hpp.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/enum_namespacecif_1a701ee5c69b8bf4a14c0807d32581e87d.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++_pdb.hpp.rst.txt -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/enum_namespacecif_1a9579bd6dc036aa07dcb73e9724cd4f54.rst.txt --- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1gzio_1_1basic__istream.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ac0f43cdcc8b1ba95aae5fa92f623993d.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a4da118af7b65801fd61c48356e67e4a1.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_pdb_8hpp_1a0cdfe208e415aa2b34e1277e5de112cb.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/file_cif++_validate.hpp.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++_pdb_cif2pdb.hpp.rst.txt -- Installing: 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+-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_condition_8hpp_1ae3fb5e492867225091edeba773f91d39.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a1020ee51b50043210b5e9c8eaecd4c28.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/structcif_1_1category_1_1item__entry.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/structcif_1_1symop__datablock.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ac3d9a984c107208b0abbabe5f9e05289.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/variable_namespacecif_1a4d1e6f19e4404091efa6d14e14654e63.rst.txt +-- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a04692e2c6a26c3dd823891c93aa68c46.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_model_8hpp_1aa8d7a4613d7166fe2e43c36894cbd1e7.rst.txt -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1condition.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++_model.hpp.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a3fa150213a7a95d9d013b5faeae2d5f2.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1spacegroup.rst.txt --- Installing: 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--- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/dir_cif++.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a18461202bb0b0d4d134bc3eb46455776.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_model_8hpp_1a6085af7e2c3294d3d5520e387757e8dd.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8250f4461c4b297082270bc37e532b88.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4f2dd5c988ef77316bb4fdda57146fd5.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1category_1_1item__entry.html +-- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1compound__source.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/dir_cif++.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a1c4c3a9495336c603c5f3d7f77f4dc64.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8c495f22c9ff90161b1ae539552e02aa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1item__value.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_cif2pdb.hpp.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_cif2pdb.hpp.html --- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a6e1d07f3689961d3ec0d1e7cbfeefc6f.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_file.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_condition_8hpp_1ae3fb5e492867225091edeba773f91d39.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_tls.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1polymer.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aa0722da1df2e70c4c68cb1e512978cae.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__colour__detail.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_gzio.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a5c256bdffd9190e69c087e64b69d786d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1multiple__results__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_gzio.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1ac681cb3a6237bc71dcba0e88fb1c0832.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_utilities_8hpp_1a2dfb81ba6ea862bc2483f1fed3477dcf.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_compound.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a52c1d908e7a659686a16cbde3684f7a1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aa697ec53ac311721d137e96508fe6268.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1key.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a07568e2424a8b9f3d87c0e7b506f01c8.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1fill__out__streambuf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1my__charconv.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a22f8e0bb538e176ebddfe89c7ef03a6d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__pdb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a643804a021f65a34aa75f121f3023104.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1iterator__impl_3_01Category_00_01T_01_4.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1af93831e3c71f1f7a80712cd6b3812992.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_pdb2cif.hpp.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_utilities_8hpp_1ae2fe1725bb5e9823d089c46b9ed5266e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a8442a8beb3ec3862b1223091ba279b3f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a636b6271c6af17a0d73dbe4557061c03.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_file.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a7b0b6dec945a1157aa9d455fd35494df.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acde0f42396a36ed1d56f59e8754968b9.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_model_8hpp_1a04742ae1684db656d2534463f850eb37.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1branch.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1aee0d4f8adeaf464b4201156efbb97f73.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a444f4493c315230d1137f13d0e28920c.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_gzio_8hpp_1a584b8865c9038c4eeba40de7d4a9f1aa.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__streambuf.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_datablock.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1atom__type__traits.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1atom.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a631597613cf60653370f704184d3b9d7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__scalar__multiplication.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_model_8hpp_1a9bb5822efb054c2979a666d9bfc0913d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9ef12a84362871f9b37c36d526dcdc87.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1spherical__dots.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_model_8hpp_1a6085af7e2c3294d3d5520e387757e8dd.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a561da00d019d125f7356b8717771b6b6.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a35974aa02359ef095b68335a05849c53.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1item__handle.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1duplicate__key__error.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_condition.hpp.html --- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a5ae3b948c3296e47bf3ae734cfdca029.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a3fa150213a7a95d9d013b5faeae2d5f2.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1aee0d4f8adeaf464b4201156efbb97f73.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a9579bd6dc036aa07dcb73e9724cd4f54.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1abbc95fb717f14cca92d73ff5ed83c685.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1category__validator.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1item__alias.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_parser.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_text.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a15ce5665ae421c0a3db9fac68c149836.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_compound.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/search.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/index.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acc0e956a0d6382e85c6ecb631e2edd21.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1sugar.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_datablock.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2190ac2315339dabb5be80f2a8634e29.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1file.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1a34c1ecdfe0e74030d387cc4e3db0f20d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1row__handle.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1aa4bb7030a077b462d75b328a2d6ef70d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4da118af7b65801fd61c48356e67e4a1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a9347107ebb4ef72dca122c3285453c4f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a28d3d6db55465d265cb5b6a7a7d93a6b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_format.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a57a7530364c9dfa84f8607824e6d70e3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1afdee9d0ba328b6dc1219e83b128b003b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/unabridged_orphan.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1point__type.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_model_8hpp_1aa8d7a4613d7166fe2e43c36894cbd1e7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1aeffd144259eee54425fd70df1a4c119a.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_validate.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a2ac4506e2b83a34ec6cc15a024f9b677.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1missing__key__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1sym__op.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1aab9ff10a498bf7bb72ce703e00c6551c.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a429736e305a06f11b86700d76f8b1ac3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_utilities.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1compound.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_forward_decl.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2e9af2d268ca7932d3b5df430dfabfe7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1atom__type__info.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a89a5f58c129d13c01bd68e91d4a0c7a1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1row__initializer.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1cb6fb0735b49d0e7796d223763718e4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a674345a2d0fb9af13bea9c833076cec0.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_matrix.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a18461202bb0b0d4d134bc3eb46455776.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1ae5e65dddeeceb84cd55b772eaca216c7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1symop__datablock.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab9c1b63f260c9ccc3740971d6ca755c7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a016b23e15d2a1d5f8121a697d7bec68e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9dbdac69f3a21d391ece6cc214da3075.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1type__validator.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1parse__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_format.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1space__group.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/page_deprecated.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__streambuf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae338b65793c18872e8bcdfe6a534c83b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8250f4461c4b297082270bc37e532b88.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1abce4bb85397326d1c0a079f43048fa18.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_dictionary_parser.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_gzio_8hpp_1a584b8865c9038c4eeba40de7d4a9f1aa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1validation__exception.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1iterator__impl_3_01Category_01_4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/bitsandpieces.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/objects.inv +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/basics.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/symmetry.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/pygments.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/plus.png +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css/badge_only.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css/theme.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/js/theme.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/basic.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/jquery.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/documentation_options.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/language_data.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Bold.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/RobotoSlab-Bold.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/RobotoSlab-Regular.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.svg +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Regular.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Italic.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.woff +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/file.png +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/searchtools.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/sphinx_highlight.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/minus.png +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/doctools.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/_sphinx_javascript_frameworks_compat.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/resources.html make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' dh_install install -m0755 -d debian/libcifpp-dev//usr @@ -8890,18 +8926,18 @@ install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data install -p -m0644 debian/copyright debian/libcifpp-data/usr/share/doc/libcifpp-data/copyright dh_installchangelogs - install -m0755 -d debian/libcifpp7/usr/share/doc/libcifpp7 - install -p -m0644 debian/.debhelper/generated/libcifpp7/dh_installchangelogs.dch.trimmed debian/libcifpp7/usr/share/doc/libcifpp7/changelog.Debian - install -p -m0644 ./changelog debian/libcifpp7/usr/share/doc/libcifpp7/changelog - install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data - install -p -m0644 debian/.debhelper/generated/libcifpp-data/dh_installchangelogs.dch.trimmed debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog.Debian - install -p -m0644 ./changelog debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev install -p -m0644 debian/.debhelper/generated/libcifpp-dev/dh_installchangelogs.dch.trimmed debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog.Debian install -p -m0644 ./changelog debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog + install -m0755 -d debian/libcifpp7/usr/share/doc/libcifpp7 + install -p -m0644 debian/.debhelper/generated/libcifpp7/dh_installchangelogs.dch.trimmed debian/libcifpp7/usr/share/doc/libcifpp7/changelog.Debian + install -p -m0644 ./changelog debian/libcifpp7/usr/share/doc/libcifpp7/changelog install -m0755 -d debian/libcifpp-doc/usr/share/doc/libcifpp-doc install -p -m0644 debian/.debhelper/generated/libcifpp-doc/dh_installchangelogs.dch.trimmed debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog.Debian install -p -m0644 ./changelog debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog + install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data + install -p -m0644 debian/.debhelper/generated/libcifpp-data/dh_installchangelogs.dch.trimmed debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog.Debian + install -p -m0644 ./changelog debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog dh_installexamples install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples cp --reflink=auto -a ./examples/1cbs.cif.gz debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples @@ -8936,18 +8972,18 @@ cd debian/libcifpp-doc cd debian/libcifpp7 cd debian/libcifpp-data - chmod a-x usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian - chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian chmod a-x usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian - gzip -9nf usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian + chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian + chmod a-x usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian + gzip -9nf usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian gzip -9nf usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian + gzip -9nf usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian chmod a-x usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf cd '/build/reproducible-path/libcifpp-7.0.7' - gzip -9nf usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian - cd '/build/reproducible-path/libcifpp-7.0.7' gzip -9nf usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf cd '/build/reproducible-path/libcifpp-7.0.7' cd '/build/reproducible-path/libcifpp-7.0.7' + cd '/build/reproducible-path/libcifpp-7.0.7' dh_fixperms find debian/libcifpp-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcifpp-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s @@ -8956,17 +8992,17 @@ find debian/libcifpp-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp7/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-data/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp7/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libcifpp-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp7/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libcifpp-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/libcifpp-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing dh_dwz -a @@ -9010,14 +9046,14 @@ ' | LC_ALL=C sort >> debian/libcifpp-data/DEBIAN/conffiles chmod 0644 -- debian/libcifpp-data/DEBIAN/conffiles dh_gencontrol - install -m0755 -d debian/libcifpp-doc/DEBIAN - echo misc:Depends= >> debian/libcifpp-doc.substvars - echo misc:Pre-Depends= >> debian/libcifpp-doc.substvars - dpkg-gencontrol -plibcifpp-doc -ldebian/changelog -Tdebian/libcifpp-doc.substvars -cdebian/control -Pdebian/libcifpp-doc install -m0755 -d debian/libcifpp-dev/DEBIAN echo misc:Depends= >> debian/libcifpp-dev.substvars echo misc:Pre-Depends= >> debian/libcifpp-dev.substvars dpkg-gencontrol -plibcifpp-dev -ldebian/changelog -Tdebian/libcifpp-dev.substvars -cdebian/control -Pdebian/libcifpp-dev + install -m0755 -d debian/libcifpp-doc/DEBIAN + echo misc:Depends= >> debian/libcifpp-doc.substvars + echo misc:Pre-Depends= >> debian/libcifpp-doc.substvars + dpkg-gencontrol -plibcifpp-doc -ldebian/changelog -Tdebian/libcifpp-doc.substvars -cdebian/control -Pdebian/libcifpp-doc install -m0755 -d debian/libcifpp-data/DEBIAN echo misc:Pre-Depends= >> debian/libcifpp-data.substvars dpkg-gencontrol -plibcifpp-data -ldebian/changelog -Tdebian/libcifpp-data.substvars -cdebian/control -Pdebian/libcifpp-data @@ -9028,19 +9064,19 @@ dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/.debhelper/libcifpp7/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcifpp7-dbgsym "-DDepends=libcifpp7 (= \${binary:Version})" "-DDescription=debug symbols for libcifpp7" -DBuild-Ids=c99c8ffa9fe0d3807e1e7be7213228967349c52a -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/libcifpp7 + chmod 0644 -- debian/libcifpp-dev/DEBIAN/control chmod 0644 -- debian/libcifpp-data/DEBIAN/control chmod 0644 -- debian/libcifpp-doc/DEBIAN/control - chmod 0644 -- debian/libcifpp-dev/DEBIAN/control chmod 0644 -- debian/libcifpp7/DEBIAN/control dh_md5sums - install -m0755 -d debian/libcifpp-doc/DEBIAN install -m0755 -d debian/libcifpp-dev/DEBIAN - install -m0755 -d debian/libcifpp-data/DEBIAN install -m0755 -d debian/libcifpp7/DEBIAN - cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + install -m0755 -d debian/libcifpp-data/DEBIAN + install -m0755 -d debian/libcifpp-doc/DEBIAN cd debian/libcifpp-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcifpp7 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcifpp-dev/DEBIAN/md5sums chmod 0644 -- debian/libcifpp7/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN @@ -9051,14 +9087,14 @@ dh_builddeb dpkg-deb --root-owner-group --build debian/libcifpp-dev .. dpkg-deb --root-owner-group --build debian/libcifpp-doc .. - dpkg-deb --root-owner-group --build debian/libcifpp-data .. - dpkg-deb --root-owner-group --build debian/.debhelper/libcifpp7/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libcifpp7 .. + dpkg-deb --root-owner-group --build debian/.debhelper/libcifpp7/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/libcifpp-data .. dpkg-deb: building package 'libcifpp-dev' in '../libcifpp-dev_7.0.7-3_amd64.deb'. dpkg-deb: building package 'libcifpp-doc' in '../libcifpp-doc_7.0.7-3_all.deb'. +dpkg-deb: building package 'libcifpp7' in '../libcifpp7_7.0.7-3_amd64.deb'. dpkg-deb: building package 'libcifpp7-dbgsym' in '../libcifpp7-dbgsym_7.0.7-3_amd64.deb'. dpkg-deb: building package 'libcifpp-data' in '../libcifpp-data_7.0.7-3_all.deb'. -dpkg-deb: building package 'libcifpp7' in '../libcifpp7_7.0.7-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libcifpp_7.0.7-3_amd64.buildinfo dpkg-genchanges --build=binary -O../libcifpp_7.0.7-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -9066,12 +9102,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/895752/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/895752/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3608220 and its subdirectories -I: Current time: Tue Nov 5 09:29:38 -12 2024 -I: pbuilder-time-stamp: 1730842178 +I: removing directory /srv/workspace/pbuilder/895752 and its subdirectories +I: Current time: Tue Dec 9 17:55:55 +14 2025 +I: pbuilder-time-stamp: 1765252555