Diff of the two buildlogs: -- --- b1/build.log 2024-12-27 00:52:06.473816011 +0000 +++ b2/build.log 2024-12-27 01:02:47.152735217 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 26 12:00:44 -12 2024 -I: pbuilder-time-stamp: 1735257644 +I: Current time: Thu Jan 29 21:15:16 +14 2026 +I: pbuilder-time-stamp: 1769670916 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying do-not-install-potentials.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/991632/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/584802/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 29 07:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/584802/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/584802/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='6c17afca5b5f4dc5a849074545c090e9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='991632' - PS1='# ' - PS2='> ' + INVOCATION_ID=0b84f2684a4c4c438466823c82777bf0 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=584802 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.t0hc8rdJ/pbuilderrc_ITMt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.t0hc8rdJ/b1 --logfile b1/build.log lammps_20240207+dfsg-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.t0hc8rdJ/pbuilderrc_LF0S --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.t0hc8rdJ/b2 --logfile b2/build.log lammps_20240207+dfsg-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/991632/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/584802/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -993,7 +1025,7 @@ Get: 802 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2024.20241115-1 [17.0 MB] Get: 803 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2024.20241115-1 [24.6 MB] Get: 804 http://deb.debian.org/debian unstable/main amd64 voro++-dev amd64 0.5+revert-to-0.4.6+dfsg1-1 [155 kB] -Fetched 779 MB in 34s (22.8 MB/s) +Fetched 779 MB in 10s (75.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19858 files and directories currently installed.) @@ -3555,8 +3587,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Dec 27 00:12:35 UTC 2024. -Universal Time is now: Fri Dec 27 00:12:35 UTC 2024. +Local time is now: Thu Jan 29 07:18:13 UTC 2026. +Universal Time is now: Thu Jan 29 07:18:13 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libcap2-bin (1:2.66-5+b1) ... @@ -4504,7 +4536,11 @@ fakeroot is already the newest version (1.36.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lammps-20240207+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lammps_20240207+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/584802/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/584802/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lammps-20240207+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lammps_20240207+dfsg-3_source.changes dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 20240207+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -4772,12 +4808,12 @@ -- Using double precision FFTs -- Using threaded FFTs -- Using builtin distributed FFT algorithms --- Configuring done (30.7s) --- Generating done (0.5s) +-- Configuring done (7.4s) +-- Generating done (0.3s) -- Build files have been written to: /build/reproducible-path/lammps-20240207+dfsg/debian/build make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_build -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build - cd debian/build && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd debian/build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -P /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/lammps-20240207+dfsg/cmake -B/build/reproducible-path/lammps-20240207+dfsg/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 @@ -4795,604 +4831,649 @@ make -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/depend make -f CMakeFiles/atom.h.dir/build.make CMakeFiles/atom.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build 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/build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/angle.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/citeme.h.dir/build.make CMakeFiles/citeme.h.dir/depend +make -f CMakeFiles/comm.h.dir/build.make CMakeFiles/comm.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/atom.h.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E 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CMakeFiles/bond.h.dir/build.make CMakeFiles/bond.h.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/atom.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/compute.h.dir/build.make CMakeFiles/compute.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake 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cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/command.h.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/dihedral.h.dir/build.make CMakeFiles/dihedral.h.dir/depend -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/dihedral.h.dir/DependInfo.cmake "--color=" -make -f 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-E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/dihedral.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/force.h.dir/build.make CMakeFiles/force.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/domain.h.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/fmt_format.h.dir/build.make CMakeFiles/fmt_format.h.dir/build -make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build -make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/error.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/group.h.dir/build.make CMakeFiles/group.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/build +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/exceptions.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/improper.h.dir/build.make CMakeFiles/improper.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/atom.h.dir/build.make CMakeFiles/atom.h.dir/build +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/fix.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/input.h.dir/build.make CMakeFiles/input.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -/usr/bin/cmake -DLAMMPS_DIR="/build/reproducible-path/lammps-20240207+dfsg" -DGIT_EXECUTABLE="/usr/bin/git" -DGIT_FOUND="TRUE" -DLAMMPS_STYLE_HEADERS_DIR="/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles" -P /build/reproducible-path/lammps-20240207+dfsg/cmake/Modules/generate_lmpgitversion.cmake +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build 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'/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/citeme.h.dir/build.make CMakeFiles/citeme.h.dir/build +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/kspace.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/lmppython.h.dir/build.make CMakeFiles/lmppython.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/lmptype.h.dir/build.make CMakeFiles/lmptype.h.dir/depend +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lammps.h.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/comm.h.dir/build.make CMakeFiles/comm.h.dir/build -[ 0%] Building CXX object CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o -[ 0%] Generating includes/lammps/angle.h -[ 0%] Generating includes/lammps/fmt/format.h -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 0%] Building C object CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o -MF CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o.d -o CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/angle.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/angle.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/fmt/format.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/fmt/format.h -[ 0%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build 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CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o -MF CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o.d -o CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 1%] Building CXX object CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o -[ 1%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build 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-/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o -MF CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o.d -o CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp -[ 1%] Generating includes/lammps/bond.h -[ 1%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body23joint.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o -MF CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o.d -o CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp -[ 1%] Generating includes/lammps/citeme.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/bond.h 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lmptype.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp -make -f CMakeFiles/domain.h.dir/build.make CMakeFiles/domain.h.dir/build -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/error.h.dir/build.make CMakeFiles/error.h.dir/build -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/memory.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 1%] Generating includes/lammps/comm.h +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build 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&& /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/region.h.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/timer.h.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/universe.h.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build 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Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lattice.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/error.h.dir/build.make CMakeFiles/error.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/lammps.h.dir/build.make CMakeFiles/lammps.h.dir/build +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/force.h.dir/build.make CMakeFiles/force.h.dir/build +make -f CMakeFiles/improper.h.dir/build.make 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/build/reproducible-path/lammps-20240207+dfsg/src/info.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/info.h -[ 3%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 3%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp -[ 3%] Generating includes/lammps/kspace.h -[ 3%] Generating includes/lammps/lattice.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/kspace.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/kspace.h -[ 3%] Generating includes/lammps/lammps.h -[ 3%] Built target info.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lammps.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lammps.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lattice.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lattice.h -make -f CMakeFiles/library.h.dir/build.make CMakeFiles/library.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/library.h.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/input.h.dir/build.make CMakeFiles/input.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/fix.h.dir/build.make CMakeFiles/fix.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 3%] Linking C static library liblammps_h5md.a -/usr/bin/cmake -P CMakeFiles/h5md.dir/cmake_clean_target.cmake -make -f CMakeFiles/library.h.dir/build.make CMakeFiles/library.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 3%] Built target lammps.h -make -f CMakeFiles/lmppython.h.dir/build.make CMakeFiles/lmppython.h.dir/depend -[ 3%] Built target kspace.h -make -f CMakeFiles/lmptype.h.dir/build.make CMakeFiles/lmptype.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build 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'/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/memory.h.dir/DependInfo.cmake "--color=" -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/library.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/library.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/lmppython.h.dir/build.make CMakeFiles/lmppython.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/info.h.dir/build.make CMakeFiles/info.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/kspace.h.dir/build.make CMakeFiles/kspace.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/memory.h.dir/build.make CMakeFiles/memory.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 3%] Generating includes/lammps/lmppython.h -/usr/bin/ar qc liblammps_h5md.a "CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o" -/usr/bin/ranlib liblammps_h5md.a -/usr/bin/cmake -E copy_if_different 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/build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lmptype.h +make -f CMakeFiles/lammps.h.dir/build.make CMakeFiles/lammps.h.dir/build +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/lattice.h.dir/build.make CMakeFiles/lattice.h.dir/build +make -f CMakeFiles/library.h.dir/build.make CMakeFiles/library.h.dir/build +make -f CMakeFiles/lmppython.h.dir/build.make CMakeFiles/lmppython.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/modify.h.dir/DependInfo.cmake "--color=" -[ 3%] Built target h5md -make -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/neighbor.h.dir/DependInfo.cmake "--color=" -[ 3%] Built target lmppython.h -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/build +make -f CMakeFiles/lmptype.h.dir/build.make 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-ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp -[ 3%] Built target memory.h -make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/depend -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/neigh_list.h.dir/DependInfo.cmake "--color=" -[ 3%] Generating includes/lammps/modify.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/modify.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/modify.h -[ 3%] Built target lmptype.h -make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/depend -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/output.h.dir/DependInfo.cmake "--color=" -[ 3%] Generating includes/lammps/neighbor.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neighbor.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neighbor.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 3%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp -[ 4%] Generating includes/lammps/neigh_list.h -[ 4%] Built target modify.h -/usr/bin/cmake -E copy_if_different 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neighbor.h -make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/depend make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/platform.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/memory.h.dir/build.make CMakeFiles/memory.h.dir/build +make -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/build +make -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 4%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp +make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/build +make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 4%] Generating includes/lammps/pair.h make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 4%] Built target neigh_list.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pair.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pair.h -make -f CMakeFiles/pointers.h.dir/build.make CMakeFiles/pointers.h.dir/depend -[ 4%] Built target output.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/pointers.h.dir/DependInfo.cmake "--color=" -[ 4%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/freebodyjoint.cpp.o -make -f CMakeFiles/region.h.dir/build.make CMakeFiles/region.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake 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-fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp +[ 0%] Generating includes/lammps/dihedral.h +[ 0%] Generating includes/lammps/error.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/angle.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/angle.h +[ 0%] Generating includes/lammps/group.h +[ 0%] Generating includes/lammps/force.h +[ 0%] Generating includes/lammps/input.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/error.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/error.h +[ 0%] Generating includes/lammps/fix.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Generating includes/lammps/universe.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/group.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/group.h +[ 0%] Generating includes/lammps/lammps.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/improper.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/improper.h +[ 1%] Generating includes/lammps/exceptions.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/input.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/input.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/fix.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/fix.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lammps.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lammps.h +[ 2%] Generating includes/lammps/info.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/force.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/force.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/domain.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/domain.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/dihedral.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/dihedral.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/exceptions.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/exceptions.h +[ 2%] Generating includes/lammps/kspace.h +[ 2%] Generating includes/lammps/library.h +[ 2%] Generating includes/lammps/lattice.h +[ 2%] Generating includes/lammps/lmptype.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/info.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/info.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lattice.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lattice.h +[ 2%] Generating includes/lammps/lmppython.h +[ 2%] Generating includes/lammps/modify.h +[ 2%] Generating includes/lammps/neighbor.h +[ 2%] Generating includes/lammps/memory.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/library.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/library.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lmptype.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lmptype.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/kspace.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/kspace.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/modify.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/modify.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lmppython.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lmppython.h +[ 2%] Generating includes/lammps/platform.h +[ 3%] Generating includes/lammps/neigh_list.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/memory.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/memory.h +[ 3%] Generating includes/lammps/pair.h +[ 3%] Generating includes/lammps/output.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neighbor.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neighbor.h +[ 3%] Generating includes/lammps/pointers.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pair.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pair.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neigh_list.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neigh_list.h +[ 3%] Generating includes/lammps/region.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/output.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/output.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/platform.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/platform.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pointers.h +[ 3%] Generating includes/lammps/universe.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/region.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/region.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/universe.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/universe.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Generating includes/lammps/timer.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Generating includes/lammps/update.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/timer.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/timer.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Generating includes/lammps/update.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/update.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/update.h -make -f CMakeFiles/utils.h.dir/build.make CMakeFiles/utils.h.dir/build -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Built target timer.h -[ 5%] Built target universe.h -make -f CMakeFiles/variable.h.dir/build.make CMakeFiles/variable.h.dir/depend make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/variable.h.dir/DependInfo.cmake "--color=" -[ 5%] Generating includes/lammps/utils.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Generating includes/lammps/utils.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/utils.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/utils.h -[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp -[ 5%] Built target update.h -make -f CMakeFiles/fmt_core.h.dir/build.make CMakeFiles/fmt_core.h.dir/depend make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Built target atom.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Built target compute.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Built target bond.h +[ 3%] Built target citeme.h +[ 3%] Built target force.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Built target fmt_format.h +[ 3%] Built target gitversion +[ 3%] Built target command.h +[ 3%] Built target comm.h +[ 3%] Built target angle.h +make -f CMakeFiles/variable.h.dir/build.make CMakeFiles/variable.h.dir/depend +[ 3%] Built target error.h +[ 3%] Built target dihedral.h +make -f CMakeFiles/fmt_core.h.dir/build.make CMakeFiles/fmt_core.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/fmt_core.h.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/variable.h.dir/build.make CMakeFiles/variable.h.dir/build +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/variable.h.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/fmt_core.h.dir/DependInfo.cmake "--color=" +[ 3%] Built target group.h +[ 3%] Built target fix.h +[ 3%] Built target input.h +[ 3%] Built target 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CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp -[ 8%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 8%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp -[ 9%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.h:4, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 9%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp -[ 9%] Building CXX 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/build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp:3: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp:3: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 10%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o +/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o -MF 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-I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem 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-I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/workspace.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/workspace.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/workspace.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/workspace.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp:3: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp:3: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o.d -o 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp +[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, @@ -5483,88 +5542,65 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp +[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp +[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp +[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.h:9, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp:1: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 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-DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG 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+/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.h:9, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp -[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.h:4, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp:1: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.h:4, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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- from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); @@ -5641,6 +5660,35 @@ /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp:1: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp:1: @@ -5649,8 +5697,11 @@ 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); @@ -5664,54 +5715,31 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -c 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.h:4, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.h:11, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, @@ -5723,26 +5751,34 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.h:4, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.h:11, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 14%] Linking CXX static library liblammps_awpmd.a +/usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake +/usr/bin/cmake -E cmake_link_script CMakeFiles/awpmd.dir/link.txt --verbose=1 +/usr/bin/ar qc liblammps_awpmd.a "CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o" "CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" "CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" +/usr/bin/ranlib liblammps_awpmd.a +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 14%] Built target awpmd [ 14%] Linking CXX static library liblammps_atc.a /usr/bin/cmake -P CMakeFiles/atc.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/atc.dir/link.txt --verbose=1 @@ -5756,105 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-I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/x86_64-linux-gnu/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPT/pair_morse_opt.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPT/pair_morse_opt.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPT/pair_morse_opt.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/OPT/pair_morse_opt.cpp [ 99%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPT/pair_ufm_opt.cpp.o @@ -8250,7 +8286,7 @@ -e 's,@LAMMPS_SOURCE_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../src,g' \ -e 's,@LAMMPS_PYTHON_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../python,g' \ -e 's,@LAMMPS_DOC_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc,g' /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py.in > /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py -WARNING: The directory '/nonexistent/first-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. +WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. Obtaining file:///build/reproducible-path/lammps-20240207%2Bdfsg/doc/utils/converters Installing build dependencies: started Installing build dependencies: finished with status 'error' @@ -8259,12 +8295,12 @@ × pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> [8 lines of output] - WARNING: The directory '/nonexistent/first-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. - WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. + WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ ERROR: Could not find a version that satisfies the requirement setuptools>=40.8.0 (from versions: none) ERROR: No matching distribution found for setuptools>=40.8.0 [end of output] @@ -8289,56 +8325,73 @@ writing output... building [html]: targets for 987 source files that are out of date updating environment: [new config] 987 added, 0 changed, 0 removed -reading sources... [ 2%] Bibliography .. Commands_compute -reading sources... [ 4%] Commands_dump .. Developer_par_part -reading sources... [ 7%] Developer_parallel .. Howto_barostat -reading sources... [ 9%] Howto_bioFF .. Howto_moltemplate -reading sources... [ 11%] Howto_multiple .. Howto_walls -reading sources... [ 13%] Howto_wsl .. Library_create -reading sources... [ 16%] Library_execute .. Modify_pair -reading sources... [ 18%] Modify_region .. Python_neighbor -reading sources... [ 20%] Python_objects .. Speed_tips -reading sources... [ 22%] Tools .. angle_mesocnt -reading sources... [ 24%] angle_mm3 .. atc_decomposition -reading sources... [ 27%] atc_electron_integration .. atc_material -reading sources... [ 29%] atc_mesh_add_to_nodeset .. atc_remove_source -reading sources... [ 31%] atc_remove_species .. bond_coeff -reading sources... [ 33%] bond_fene .. bond_zero -reading sources... [ 36%] bonds .. compute_chunk_spread_atom -reading sources... [ 38%] compute_cluster_atom .. compute_entropy_atom -reading sources... [ 40%] compute_erotate_asphere .. compute_ke_atom -reading sources... [ 42%] compute_ke_atom_eff .. compute_property_atom -reading sources... [ 44%] compute_property_chunk .. compute_smd_tlsph_dt -reading sources... [ 47%] compute_smd_tlsph_num_neighs .. compute_tally -reading sources... [ 49%] compute_tdpd_cc_atom .. compute_vacf -reading sources... [ 51%] compute_vcm_chunk .. dihedral_nharmonic -reading sources... [ 53%] dihedral_none .. dynamical_matrix -reading sources... [ 56%] echo .. fix_ave_spatial -reading sources... [ 58%] fix_ave_spatial_sphere .. fix_drude -reading sources... [ 60%] fix_drude_transform .. fix_halt -reading sources... [ 62%] fix_heat .. fix_mol_swap -reading sources... [ 64%] fix_momentum .. fix_nve_asphere -reading sources... [ 67%] fix_nve_asphere_noforce .. fix_oneway -reading sources... [ 69%] fix_orient .. fix_qeq_comb -reading sources... [ 71%] fix_qeq_reaxff .. fix_smd_setvel -reading sources... [ 73%] fix_smd_wall_surface .. fix_vector -reading sources... [ 76%] fix_viscosity .. improper_class2 -reading sources... [ 78%] improper_coeff .. kspace_style -reading sources... [ 80%] label .. pair_aip_water_2dm -reading sources... [ 82%] pair_airebo .. pair_cosine_squared -reading sources... [ 84%] pair_coul .. pair_gauss -reading sources... [ 87%] pair_gayberne .. pair_lj_cubic -reading sources... [ 89%] pair_lj_cut_coul .. pair_mliap -reading sources... [ 91%] pair_modify .. pair_sdpd_taitwater_isothermal -reading sources... [ 93%] pair_smatb .. pair_style -reading sources... [ 96%] pair_sw .. partition -reading sources... [ 98%] plugin .. tad -reading sources... [100%] temper .. write_restart +reading sources... [ 2%] Bibliography .. Classes_atom +reading sources... [ 3%] Classes_input .. Commands_structure +reading sources... [ 5%] Cplusplus .. Developer_parallel +reading sources... [ 6%] Developer_platform .. Errors_warnings +reading sources... [ 8%] Examples .. Howto_diffusion +reading sources... [ 9%] Howto_dispersion .. Howto_nemd +reading sources... [ 11%] Howto_output .. Howto_tip5p +reading sources... [ 12%] Howto_triclinic .. Intro_authors +reading sources... [ 14%] Intro_citing .. Library_objects +reading sources... [ 15%] Library_properties .. Modify_gran_sub_mod +reading sources... [ 17%] Modify_kspace .. Python_config +reading sources... [ 18%] Python_create .. Python_run +reading sources... [ 20%] Python_scatter .. Speed_omp +reading sources... [ 21%] Speed_opt .. angle_cosine_shift_exp +reading sources... [ 23%] angle_cosine_squared .. angle_style +reading sources... [ 24%] angle_table .. atc_control_momentum +reading sources... [ 26%] atc_control_thermal .. atc_hardy_on_the_fly +reading sources... [ 27%] atc_hardy_rates .. atc_mesh_create_nodeset +reading sources... [ 29%] atc_mesh_delete_elements .. atc_remove_molecule +reading sources... [ 30%] atc_remove_source .. atc_write_atom_weights +reading sources... [ 32%] atc_write_restart .. bond_harmonic_shift +reading sources... [ 33%] bond_harmonic_shift_cut .. bond_zero +reading sources... [ 35%] bonds .. compute_basal_atom +reading sources... [ 36%] compute_body_local .. compute_coord_atom +reading sources... [ 38%] compute_count_type .. compute_erotate_asphere +reading sources... [ 39%] compute_erotate_rigid .. compute_hexorder_atom +reading sources... [ 41%] compute_hma .. compute_msd_nongauss +reading sources... [ 42%] compute_nbond_atom .. compute_property_grid +reading sources... [ 44%] compute_property_local .. compute_smd_internal_energy +reading sources... [ 45%] compute_smd_plastic_strain .. compute_smd_ulsph_strain_rate +reading sources... [ 47%] compute_smd_ulsph_stress .. compute_temp_asphere +reading sources... [ 48%] compute_temp_body .. compute_temp_sphere +reading sources... [ 50%] compute_temp_uef .. dielectric +reading sources... [ 52%] dihedral_charmm .. dihedral_spherical +reading sources... [ 53%] dihedral_style .. dump_netcdf +reading sources... [ 55%] dump_vtk .. fix_amoeba_pitorsion +reading sources... [ 56%] fix_append_atoms .. fix_bocs +reading sources... [ 58%] fix_bond_break .. fix_dpd_source +reading sources... [ 59%] fix_drag .. fix_ffl +reading sources... [ 61%] fix_filter_corotate .. fix_indent +reading sources... [ 62%] fix_ipi .. fix_modify_atc_commands +reading sources... [ 64%] fix_mol_swap .. fix_nphug +reading sources... [ 65%] fix_npt_asphere .. fix_nve_eff +reading sources... [ 67%] fix_nve_limit .. fix_oneway +reading sources... [ 68%] fix_orient .. fix_print +reading sources... [ 70%] fix_propel_self .. fix_rhok +reading sources... [ 71%] fix_rigid .. fix_smd_wall_surface +reading sources... [ 73%] fix_sph .. fix_tgnh_drude +reading sources... [ 74%] fix_thermal_conductivity .. fix_wall_gran_region +reading sources... [ 76%] fix_wall_piston .. improper_cossq +reading sources... [ 77%] improper_cvff .. include +reading sources... [ 79%] info .. min_style +reading sources... [ 80%] minimize .. pair_atm +reading sources... [ 82%] pair_awpmd .. pair_class2 +reading sources... [ 83%] pair_coeff .. pair_dpd_fdt +reading sources... [ 85%] pair_drip .. pair_gromacs +reading sources... [ 86%] pair_gw .. pair_list +reading sources... [ 88%] pair_lj .. pair_lubricate +reading sources... [ 89%] pair_lubricateU .. pair_multi_lucy_rx +reading sources... [ 91%] pair_nb3b .. pair_resquared +reading sources... [ 92%] pair_saip_metal .. pair_sph_taitwater +reading sources... [ 94%] pair_sph_taitwater_morris .. pair_tersoff_mod +reading sources... [ 95%] pair_tersoff_zbl .. pairs +reading sources... [ 97%] partition .. reset_timestep +reading sources... [ 98%] restart .. third_order +reading sources... [100%] timer .. write_restart -WARNING: unknown directive or role name: f:func -/build/reproducible-path/lammps-20240207+dfsg/doc/src/Classes_lammps.rst:4: ERROR: Unknown interpreted text role "f:func". [docutils] -WARNING: unknown directive or role name: f:func -:4: ERROR: Unknown interpreted text role "f:func". [docutils] WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1: ERROR: Unknown interpreted text role "f:mod". [docutils] WARNING: unknown directive or role name: f:mod @@ -11198,6 +11251,10 @@ :o integer(c_int) status [optional]: 1 when all ranks had the error, 2 on a single-rank error. :to: :cpp:func:`lammps_get_last_error_message` [docutils] +WARNING: unknown directive or role name: f:func +/build/reproducible-path/lammps-20240207+dfsg/doc/src/Classes_lammps.rst:4: ERROR: Unknown interpreted text role "f:func". [docutils] +WARNING: unknown directive or role name: f:func +:4: ERROR: Unknown interpreted text role "f:func". [docutils] looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_coeff.rst: document is referenced in multiple toctrees: ['angles', 'commands_list'], selecting: commands_list <- angle_coeff @@ -11231,58 +11288,79 @@ preparing documents... done copying assets... copying static files... +Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/basic.css -Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js copying static files: done copying extra files... copying extra files: done copying assets: done -writing output... [ 2%] Build .. Commands_dump -writing output... [ 4%] Commands_fix .. Developer_parallel -writing output... [ 7%] Developer_platform .. Howto_bioFF -writing output... [ 9%] Howto_body .. Howto_multiple -writing output... [ 11%] Howto_nemd .. Howto_wsl -writing output... [ 13%] Install .. Library_execute -writing output... [ 16%] Library_neighbor .. Modify_region -writing output... [ 18%] Modify_requirements .. Python_objects -writing output... [ 20%] Python_overview .. Tools -writing output... [ 22%] accel_styles .. angle_mm3 -writing output... [ 24%] angle_none .. atc_electron_integration -writing output... [ 27%] atc_equilibrium_start .. atc_mesh_add_to_nodeset -writing output... [ 29%] atc_mesh_create .. atc_remove_species -writing output... [ 31%] atc_reset_atomic_reference .. bond_fene -writing output... [ 33%] bond_fene_expand .. bonds -writing output... [ 36%] boundary .. compute_cluster_atom -writing output... [ 38%] compute_cna_atom .. compute_erotate_asphere -writing output... [ 40%] compute_erotate_rigid .. compute_ke_atom_eff -writing output... [ 42%] compute_ke_eff .. compute_property_chunk -writing output... [ 44%] compute_property_grid .. compute_smd_tlsph_num_neighs -writing output... [ 47%] compute_smd_tlsph_shape .. compute_tdpd_cc_atom -writing output... [ 49%] compute_temp .. compute_vcm_chunk -writing output... [ 51%] compute_viscosity_cos .. dihedral_none -writing output... [ 53%] dihedral_opls .. echo -writing output... [ 56%] fitpod_command .. fix_ave_spatial_sphere -writing output... [ 58%] fix_ave_time .. fix_drude_transform -writing output... [ 60%] fix_dt_reset .. fix_heat -writing output... [ 62%] fix_heat_flow .. fix_momentum -writing output... [ 64%] fix_move .. fix_nve_asphere_noforce -writing output... [ 67%] fix_nve_awpmd .. fix_orient -writing output... [ 69%] fix_orient_eco .. fix_qeq_reaxff -writing output... [ 71%] fix_qmmm .. fix_smd_wall_surface -writing output... [ 73%] fix_sph .. fix_viscosity -writing output... [ 76%] fix_viscous .. improper_coeff -writing output... [ 78%] improper_cossq .. label -writing output... [ 80%] labelmap .. pair_airebo -writing output... [ 82%] pair_amoeba .. pair_coul -writing output... [ 84%] pair_coul_diel .. pair_gayberne -writing output... [ 87%] pair_gran .. pair_lj_cut_coul -writing output... [ 89%] pair_lj_cut_sphere .. pair_modify -writing output... [ 91%] pair_momb .. pair_smatb -writing output... [ 93%] pair_smd_hertz .. pair_sw -writing output... [ 96%] pair_sw_angle_table .. plugin -writing output... [ 98%] prd .. temper -writing output... [100%] temper_grem .. write_restart +writing output... [ 2%] Build .. Classes_input +writing output... [ 3%] Classes_lammps .. Cplusplus +writing output... [ 5%] Developer .. Developer_platform +writing output... [ 6%] Developer_plugins .. Examples +writing output... [ 8%] Fortran .. Howto_dispersion +writing output... [ 9%] Howto_drude .. Howto_output +writing output... [ 11%] Howto_peri .. Howto_triclinic +writing output... [ 12%] Howto_type_labels .. Intro_citing +writing output... [ 14%] Intro_features .. Library_properties +writing output... [ 15%] Library_scatter .. Modify_kspace +writing output... [ 17%] Modify_min .. Python_create +writing output... [ 18%] Python_error .. Python_scatter +writing output... [ 20%] Python_trouble .. Speed_opt +writing output... [ 21%] Speed_packages .. angle_cosine_squared +writing output... [ 23%] angle_cross .. angle_table +writing output... [ 24%] angle_write .. atc_control_thermal +writing output... [ 26%] atc_decomposition .. atc_hardy_rates +writing output... [ 27%] atc_initial .. atc_mesh_delete_elements +writing output... [ 29%] atc_mesh_nodeset_to_elementset .. atc_remove_source +writing output... [ 30%] atc_remove_species .. atc_write_restart +writing output... [ 32%] atom_modify .. bond_harmonic_shift_cut +writing output... [ 33%] bond_hybrid .. bonds +writing output... [ 35%] boundary .. compute_body_local +writing output... [ 36%] compute_bond .. compute_count_type +writing output... [ 38%] compute_damage_atom .. compute_erotate_rigid +writing output... [ 39%] compute_erotate_sphere .. compute_hma +writing output... [ 41%] compute_improper .. compute_nbond_atom +writing output... [ 42%] compute_omega_chunk .. compute_property_local +writing output... [ 44%] compute_ptm_atom .. compute_smd_plastic_strain +writing output... [ 45%] compute_smd_plastic_strain_rate .. compute_smd_ulsph_stress +writing output... [ 47%] compute_smd_vol .. compute_temp_body +writing output... [ 48%] compute_temp_chunk .. compute_temp_uef +writing output... [ 50%] compute_ti .. dihedral_charmm +writing output... [ 52%] dihedral_class2 .. dihedral_style +writing output... [ 53%] dihedral_table .. dump_vtk +writing output... [ 55%] dumps .. fix_append_atoms +writing output... [ 56%] fix_atc .. fix_bond_break +writing output... [ 58%] fix_bond_create .. fix_drag +writing output... [ 59%] fix_drude .. fix_filter_corotate +writing output... [ 61%] fix_flow_gauss .. fix_ipi +writing output... [ 62%] fix_langevin .. fix_mol_swap +writing output... [ 64%] fix_momentum .. fix_npt_asphere +writing output... [ 65%] fix_npt_body .. fix_nve_limit +writing output... [ 67%] fix_nve_line .. fix_orient +writing output... [ 68%] fix_orient_eco .. fix_propel_self +writing output... [ 70%] fix_property_atom .. fix_rigid +writing output... [ 71%] fix_rigid_meso .. fix_sph +writing output... [ 73%] fix_sph_stationary .. fix_thermal_conductivity +writing output... [ 74%] fix_ti_spring .. fix_wall_piston +writing output... [ 76%] fix_wall_reflect .. improper_cvff +writing output... [ 77%] improper_distance .. info +writing output... [ 79%] jump .. minimize +writing output... [ 80%] molecule .. pair_awpmd +writing output... [ 82%] pair_beck .. pair_coeff +writing output... [ 83%] pair_colloid .. pair_drip +writing output... [ 85%] pair_dsmc .. pair_gw +writing output... [ 86%] pair_harmonic_cut .. pair_lj +writing output... [ 88%] pair_lj96 .. pair_lubricateU +writing output... [ 89%] pair_mdf .. pair_nb3b +writing output... [ 91%] pair_nm .. pair_saip_metal +writing output... [ 92%] pair_sdpd_taitwater_isothermal .. pair_sph_taitwater_morris +writing output... [ 94%] pair_spica .. pair_tersoff_zbl +writing output... [ 95%] pair_thole .. partition +writing output... [ 97%] plugin .. restart +writing output... [ 98%] run .. timer +writing output... [100%] timestep .. write_restart generating indices... genindex py-modindex done writing additional pages... search done @@ -14333,9 +14411,9 @@ preparing documents... done copying assets... copying static files... +Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/basic.css -Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js copying static files: done copying extra files... copying extra files: done @@ -14381,7 +14459,7 @@ 1 by 1 by 1 MPI processor grid Created 8141 atoms using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) - create_atoms CPU = 0.003 seconds + create_atoms CPU = 0.002 seconds 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary @@ -14442,20 +14520,20 @@ 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 -Loop time of 12.0727 on 1 procs for 5000 steps with 8141 atoms +Loop time of 4.87262 on 1 procs for 5000 steps with 8141 atoms -Performance: 107349.311 tau/day, 414.156 timesteps/s, 3.372 Matom-step/s -90.4% CPU use with 1 MPI tasks x 1 OpenMP threads +Performance: 265975.863 tau/day, 1026.141 timesteps/s, 8.354 Matom-step/s +100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 10.102 | 10.102 | 10.102 | 0.0 | 83.68 -Neigh | 0.59823 | 0.59823 | 0.59823 | 0.0 | 4.96 -Comm | 0.014106 | 0.014106 | 0.014106 | 0.0 | 0.12 -Output | 0.0028735 | 0.0028735 | 0.0028735 | 0.0 | 0.02 -Modify | 1.0774 | 1.0774 | 1.0774 | 0.0 | 8.92 -Other | | 0.2782 | | | 2.30 +Pair | 4.0644 | 4.0644 | 4.0644 | 0.0 | 83.41 +Neigh | 0.23728 | 0.23728 | 0.23728 | 0.0 | 4.87 +Comm | 0.0039721 | 0.0039721 | 0.0039721 | 0.0 | 0.08 +Output | 0.0011555 | 0.0011555 | 0.0011555 | 0.0 | 0.02 +Modify | 0.41378 | 0.41378 | 0.41378 | 0.0 | 8.49 +Other | | 0.152 | | | 3.12 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -14468,7 +14546,7 @@ Ave neighs/atom = 8.7690701 Neighbor list builds = 100 Dangerous builds = 0 -Total wall time: 0:00:12 +Total wall time: 0:00:04 rm -rf test mkdir test; cp examples/crack/* test/ cd test; mpirun -np 2 --allow-run-as-root /build/reproducible-path/lammps-20240207+dfsg/debian/build/lmp < in.crack @@ -14481,7 +14559,7 @@ 2 by 1 by 1 MPI processor grid Created 8141 atoms using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) - create_atoms CPU = 0.002 seconds + create_atoms CPU = 0.001 seconds 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary @@ -14542,20 +14620,20 @@ 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 -Loop time of 9.92429 on 2 procs for 5000 steps with 8141 atoms +Loop time of 2.598 on 2 procs for 5000 steps with 8141 atoms -Performance: 130588.744 tau/day, 503.815 timesteps/s, 4.102 Matom-step/s -73.3% CPU use with 2 MPI tasks x 1 OpenMP threads +Performance: 498845.988 tau/day, 1924.560 timesteps/s, 15.668 Matom-step/s +98.8% CPU use with 2 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 5.2908 | 6.0946 | 6.8984 | 32.6 | 61.41 -Neigh | 0.36705 | 0.41821 | 0.46937 | 7.9 | 4.21 -Comm | 1.4805 | 2.344 | 3.2075 | 56.4 | 23.62 -Output | 0.0013655 | 0.0033162 | 0.005267 | 3.4 | 0.03 -Modify | 0.51027 | 0.5524 | 0.59452 | 5.7 | 5.57 -Other | | 0.5118 | | | 5.16 +Pair | 2.0292 | 2.034 | 2.0388 | 0.3 | 78.29 +Neigh | 0.13172 | 0.14063 | 0.14953 | 2.4 | 5.41 +Comm | 0.1087 | 0.12462 | 0.14053 | 4.5 | 4.80 +Output | 0.00066234 | 0.00083035 | 0.00099835 | 0.0 | 0.03 +Modify | 0.20989 | 0.21012 | 0.21036 | 0.1 | 8.09 +Other | | 0.0878 | | | 3.38 Nlocal: 4070.5 ave 4085 max 4056 min Histogram: 1 0 0 0 0 0 0 0 0 1 @@ -14568,7 +14646,7 @@ Ave neighs/atom = 8.7704213 Neighbor list builds = 106 Dangerous builds = 0 -Total wall time: 0:00:09 +Total wall time: 0:00:02 rm -rf test make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_test -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps -Nliblammps-dev -Nliblammps0t64 -Npython3-lammps @@ -14578,7 +14656,7 @@ dh_testroot -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_prep -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_auto_install -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps-doc -Nlammps-data -Nlammps-examples - cd debian/build && make -j20 install DESTDIR=/build/reproducible-path/lammps-20240207\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd debian/build && make -j42 install DESTDIR=/build/reproducible-path/lammps-20240207\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -P /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/lammps-20240207+dfsg/cmake -B/build/reproducible-path/lammps-20240207+dfsg/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 @@ -14658,37 +14736,37 @@ running build running build_py creating build/lib/lammps +copying lammps/data.py -> build/lib/lammps +copying lammps/core.py -> build/lib/lammps +copying lammps/pylammps.py -> build/lib/lammps copying lammps/__init__.py -> build/lib/lammps copying lammps/constants.py -> build/lib/lammps -copying lammps/pylammps.py -> build/lib/lammps -copying lammps/formats.py -> build/lib/lammps copying lammps/numpy_wrapper.py -> build/lib/lammps -copying lammps/core.py -> build/lib/lammps -copying lammps/data.py -> build/lib/lammps +copying lammps/formats.py -> build/lib/lammps creating build/lib/lammps/mliap -copying lammps/mliap/__init__.py -> build/lib/lammps/mliap -copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap -copying lammps/mliap/loader.py -> build/lib/lammps/mliap copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap +copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap +copying lammps/mliap/__init__.py -> build/lib/lammps/mliap copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap +copying lammps/mliap/loader.py -> build/lib/lammps/mliap installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/lammps -copying build/lib/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/constants.py -> build/bdist.linux-x86_64/wheel/./lammps creating build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap -copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap -copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/data.py -> build/bdist.linux-x86_64/wheel/./lammps +copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/pylammps.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/formats.py -> build/bdist.linux-x86_64/wheel/./lammps +copying build/lib/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps +copying build/lib/lammps/constants.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/data.py -> build/bdist.linux-x86_64/wheel/./lammps +copying build/lib/lammps/formats.py -> build/bdist.linux-x86_64/wheel/./lammps running install_egg_info running egg_info creating lammps.egg-info @@ -14701,7 +14779,7 @@ Copying lammps.egg-info to build/bdist.linux-x86_64/wheel/./lammps-2024.2.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/lammps-2024.2.7.dist-info/WHEEL -creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.13_lammps/.tmp-m7_7r5px/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.13_lammps/.tmp-42gzcflf/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'lammps/__init__.py' adding 'lammps/constants.py' adding 'lammps/core.py' @@ -14740,37 +14818,37 @@ running build running build_py creating build/lib/lammps +copying lammps/data.py -> build/lib/lammps +copying lammps/core.py -> build/lib/lammps +copying lammps/pylammps.py -> build/lib/lammps copying lammps/__init__.py -> build/lib/lammps copying lammps/constants.py -> build/lib/lammps -copying lammps/pylammps.py -> build/lib/lammps -copying lammps/formats.py -> build/lib/lammps copying lammps/numpy_wrapper.py -> build/lib/lammps -copying lammps/core.py -> build/lib/lammps -copying lammps/data.py -> build/lib/lammps +copying lammps/formats.py -> build/lib/lammps creating build/lib/lammps/mliap -copying lammps/mliap/__init__.py -> build/lib/lammps/mliap -copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap -copying lammps/mliap/loader.py -> build/lib/lammps/mliap copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap +copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap +copying lammps/mliap/__init__.py -> build/lib/lammps/mliap copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap +copying lammps/mliap/loader.py -> build/lib/lammps/mliap installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/lammps -copying build/lib/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/constants.py -> build/bdist.linux-x86_64/wheel/./lammps creating build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap -copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap -copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/data.py -> build/bdist.linux-x86_64/wheel/./lammps +copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/pylammps.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/formats.py -> build/bdist.linux-x86_64/wheel/./lammps +copying build/lib/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps +copying build/lib/lammps/constants.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/data.py -> build/bdist.linux-x86_64/wheel/./lammps +copying build/lib/lammps/formats.py -> build/bdist.linux-x86_64/wheel/./lammps running install_egg_info running egg_info creating lammps.egg-info @@ -14783,7 +14861,7 @@ Copying lammps.egg-info to build/bdist.linux-x86_64/wheel/./lammps-2024.2.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/lammps-2024.2.7.dist-info/WHEEL -creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/.tmp-mmbaiani/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/.tmp-_y8jrgvs/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'lammps/__init__.py' adding 'lammps/constants.py' adding 'lammps/core.py' @@ -14857,7 +14935,7 @@ 1 by 1 by 1 MPI processor grid Created 4000 atoms using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) - create_atoms CPU = 0.002 seconds + create_atoms CPU = 0.001 seconds Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 20 steps, delay = 0 steps, check = no @@ -14879,20 +14957,20 @@ Step Temp E_pair E_mol TotEng Press 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 100 0.75715334 -5.7581426 0 -4.6226965 0.20850222 -Loop time of 1.08666 on 1 procs for 100 steps with 4000 atoms +Loop time of 0.240153 on 1 procs for 100 steps with 4000 atoms -Performance: 39754.692 tau/day, 92.025 timesteps/s, 368.099 katom-step/s -49.9% CPU use with 1 MPI tasks x 1 OpenMP threads +Performance: 179885.690 tau/day, 416.402 timesteps/s, 1.666 Matom-step/s +100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 0.9362 | 0.9362 | 0.9362 | 0.0 | 86.15 -Neigh | 0.11641 | 0.11641 | 0.11641 | 0.0 | 10.71 -Comm | 0.017838 | 0.017838 | 0.017838 | 0.0 | 1.64 -Output | 7.9611e-05 | 7.9611e-05 | 7.9611e-05 | 0.0 | 0.01 -Modify | 0.009696 | 0.009696 | 0.009696 | 0.0 | 0.89 -Other | | 0.006447 | | | 0.59 +Pair | 0.1982 | 0.1982 | 0.1982 | 0.0 | 82.53 +Neigh | 0.032405 | 0.032405 | 0.032405 | 0.0 | 13.49 +Comm | 0.004629 | 0.004629 | 0.004629 | 0.0 | 1.93 +Output | 2.151e-05 | 2.151e-05 | 2.151e-05 | 0.0 | 0.01 +Modify | 0.0037322 | 0.0037322 | 0.0037322 | 0.0 | 1.55 +Other | | 0.001162 | | | 0.48 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -14905,7 +14983,7 @@ Ave neighs/atom = 37.5905 Neighbor list builds = 5 Dangerous builds not checked -Total wall time: 0:00:01 +Total wall time: 0:00:00 make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_python3 -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_installsystemduser -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build @@ -14921,3197 +14999,3197 @@ debian/rules execute_after_dh_fixperms-indep make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' find /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ -type f -a -not -name *.sh -print -exec chmod 644 {} \; -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/DIFFUSE/in.msd.2d -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/DIFFUSE/log.3Aug18.msd.2d.g++.8 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/DIFFUSE/log.3Aug18.vacf.2d.g++.8 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/DIFFUSE/in.vacf.2d -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/DIFFUSE/README -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peri/log.27Nov18.peri.ves.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peri/in.peri-pmb -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peri/in.peri.lps -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peri/in.peri.eps -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peri/in.peri.ves -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peri/in.peri.pmb -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peri/log.27Nov18.peri.ves.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peri/log.27Nov18.peri.pmb.g++.4 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+/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/LAMMPSInterfaceCXX.cmake +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/bond_zero2.h +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/Makefile +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_morse2.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_morse2_omp.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/nve2plugin.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/improper_zero2.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/fix_nve2.h +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_morse2_omp.h +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/dihedral_zero2.h +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/fix_nve2.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/angle_zero2.h +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_zero2.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/bond_zero2.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/improper_zero2.h +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_morse2.h +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/zero2plugin.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/angle_zero2.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/Makefile.common +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/morse2plugin.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/helloplugin.cpp make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_missing -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules override_dh_dwz @@ -18124,20 +18202,20 @@ dh_installdeb -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_gencontrol -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dpkg-gencontrol: warning: Depends field of package lammps-doc: substitution variable ${sphinxdoc:Depends} used, but is not defined -dpkg-gencontrol: warning: Depends field of package liblammps-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-lammps: substitution variable ${shlibs:Depends} used, but is not defined +dpkg-gencontrol: warning: Depends field of package liblammps-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package lammps-examples: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_builddeb -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_20240207+dfsg-3_amd64.deb'. dpkg-deb: building package 'liblammps-dev' in '../liblammps-dev_20240207+dfsg-3_amd64.deb'. -dpkg-deb: building package 'lammps-data' in '../lammps-data_20240207+dfsg-3_all.deb'. -dpkg-deb: building package 'lammps-doc' in '../lammps-doc_20240207+dfsg-3_all.deb'. +dpkg-deb: building package 'lammps' in '../lammps_20240207+dfsg-3_amd64.deb'. dpkg-deb: building package 'liblammps0t64' in '../liblammps0t64_20240207+dfsg-3_amd64.deb'. dpkg-deb: building package 'liblammps0t64-dbgsym' in '../liblammps0t64-dbgsym_20240207+dfsg-3_amd64.deb'. -dpkg-deb: building package 'lammps-examples' in '../lammps-examples_20240207+dfsg-3_all.deb'. -dpkg-deb: building package 'lammps' in '../lammps_20240207+dfsg-3_amd64.deb'. dpkg-deb: building package 'python3-lammps' in '../python3-lammps_20240207+dfsg-3_amd64.deb'. +dpkg-deb: building package 'lammps-doc' in '../lammps-doc_20240207+dfsg-3_all.deb'. +dpkg-deb: building package 'lammps-data' in '../lammps-data_20240207+dfsg-3_all.deb'. +dpkg-deb: building package 'lammps-examples' in '../lammps-examples_20240207+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary -O../lammps_20240207+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../lammps_20240207+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -18145,12 +18223,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/584802/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/584802/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/991632 and its subdirectories -I: Current time: Thu Dec 26 12:52:05 -12 2024 -I: pbuilder-time-stamp: 1735260725 +I: removing directory /srv/workspace/pbuilder/584802 and its subdirectories +I: Current time: Thu Jan 29 21:25:45 +14 2026 +I: pbuilder-time-stamp: 1769671545